Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 417 of 770
Found at i:128411738 original size:49 final size:49
Alignment explanation
Indices: 128411684--128412064 Score: 603
Period size: 49 Copynumber: 7.9 Consensus size: 49
128411674 CACACATATG
128411684 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
128411733 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
128411780 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
128411829 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
128411876 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* *
128411925 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
* * *
128411974 CTTCACATTCATCACATCGGCCATCAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
128412021 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
128412065 CATCTCCTAC
Statistics
Matches: 306, Mismatches: 20, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
47 130 0.42
49 176 0.58
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:128411802 original size:96 final size:96
Alignment explanation
Indices: 128411684--128412065 Score: 633
Period size: 96 Copynumber: 4.0 Consensus size: 96
128411674 CACACATATG
128411684 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
128411749 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
*
128411780 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
128411845 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
* * *
128411876 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
128411941 TTGGCCATTAGGCCTTATCACATGTATATACAC
66 TCGGCCATTAGGCCTTATCACA--TATATACTC
* * * *
128411974 CTTCACATTCATCACATCGGCCATCAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
128412037 TTGGCCATTAGGCCTTATCACATATATAC
66 TCGGCCATTAGGCCTTATCACATATATAC
128412066 ATCTCCTACA
Statistics
Matches: 274, Mismatches: 10, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
94 7 0.03
96 225 0.82
98 42 0.15
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTC
Found at i:128411856 original size:145 final size:143
Alignment explanation
Indices: 128411685--128412066 Score: 674
Period size: 145 Copynumber: 2.6 Consensus size: 143
128411675 ACACATATGT
* *
128411685 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACAT
* *
128411750 CGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATC
64 TGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
128411815 ACATATATATACACC
129 ACATATATATACACC
128411830 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
128411895 GCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
66 GCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
*
128411960 ACATGTATATACACC
129 ACATATATATACACC
*
128411975 TTCACATTCATCACATCGGCCATCAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
128412040 GCCATTAGGCCTTATCACATATATACA
66 GCCATTAGGCCTTATCACATATATACA
128412067 TCTCCTACAT
Statistics
Matches: 229, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
143 53 0.23
145 176 0.77
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
ATATATATACACC
Found at i:128417645 original size:39 final size:39
Alignment explanation
Indices: 128417598--128417780 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
128417588 AATGTTCGAG
128417598 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
128417637 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
128417676 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
128417715 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
128417755 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
128417781 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:128425151 original size:37 final size:39
Alignment explanation
Indices: 128425032--128425212 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 39
128425022 AATGTTCGAG
128425032 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
128425071 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
128425110 TGATA-CCGGGCTAAG-CCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
128425147 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
128425187 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
128425213 GTTTGAACGA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
37 23 0.19
38 19 0.16
39 43 0.35
40 37 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:128428750 original size:46 final size:46
Alignment explanation
Indices: 128428695--128428863 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
128428685 GGTTGAGCAT
128428695 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGC
** * *
128428741 CCGAACTCGTTGAGTTGAGTTTGAGTT---C-GTGAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--GC
* * * **
128428786 ATTCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACAC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGC
* *
128428834 CCGAGCTCGTTGAGTTGAGTCCAAGTTCAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC
128428864 TTAGGGGCGG
Statistics
Matches: 95, Mismatches: 17, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 51 0.54
47 23 0.24
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGC
Found at i:128428861 original size:93 final size:93
Alignment explanation
Indices: 128428691--128428861 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
128428681 GGATGGTTGA
* **
128428691 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
***
128428756 TGAGTTTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * *
128428784 GCATTCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
128428849 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
128428862 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:128437502 original size:54 final size:53
Alignment explanation
Indices: 128437420--128437525 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 53
128437410 AAGCGTCCTG
*
128437420 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTTCTA
* * *
128437474 GTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTTCT
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTTCT
128437526 GGCAGCCATG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 10 0.21
54 38 0.79
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.38
Consensus pattern (53 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTTCTA
Found at i:128437524 original size:26 final size:26
Alignment explanation
Indices: 128437417--128437527 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
128437407 AGGAAGCGTC
* *
128437417 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
128437444 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
128437471 CTAGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
128437498 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
128437524 CTGG
1 CTGG
128437528 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 16 0.21
27 58 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:128440332 original size:40 final size:40
Alignment explanation
Indices: 128440205--128440334 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
128440195 ATGCTGGAAA
* *
128440205 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
128440245 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
128440285 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
128440325 TTATATCCGG
1 TTATATCCGG
128440335 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:128448343 original size:39 final size:40
Alignment explanation
Indices: 128448217--128448345 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
128448207 ATGCTGGAAA
* *
128448217 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
128448257 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
128448297 TTCTATCCGGGCTAAGA-CCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
128448336 TTATATCCGG
1 TTATATCCGG
128448346 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 30 0.40
40 44 0.59
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:128450820 original size:46 final size:46
Alignment explanation
Indices: 128450697--128450923 Score: 318
Period size: 46 Copynumber: 5.0 Consensus size: 46
128450687 TTAGGATTTT
** * *
128450697 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAA-GCCGAATGGCCA
* *
128450744 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAA-GCCGAATGGCCA
128450791 ATGTGA-GAATGTGAACATGCATATATGTGATAAG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCA
* *
128450835 ATGTGATGAATGTGAACATGCATATATGTGGTAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCA
*
128450881 ATGTGATGAATGTGAA-ATGCAT-TATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGAT-AAGCCGAATGGC
128450924 TAGTGTGAAA
Statistics
Matches: 167, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
44 24 0.14
45 46 0.28
46 50 0.30
47 47 0.28
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (46 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGCCGAATGGCCA
Found at i:128450931 original size:91 final size:94
Alignment explanation
Indices: 128450697--128450923 Score: 322
Period size: 91 Copynumber: 2.5 Consensus size: 94
128450687 TTAGGATTTT
** * * * *
128450697 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACA
*
128450762 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
128450791 ATGTGA-GAATGTGAACATGCATATATGTGAT-AAG-CGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACA
* *
128450853 TGCATATATGTGGTAA-GCCGAATGGCTA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
128450881 ATGTGATGAATGTGAA-ATGCAT-TATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGC
128450924 TAGTGTGAAA
Statistics
Matches: 120, Mismatches: 10, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
89 7 0.06
90 26 0.22
91 58 0.48
92 2 0.02
93 21 0.17
94 6 0.05
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:128451220 original size:37 final size:37
Alignment explanation
Indices: 128451091--128451219 Score: 194
Period size: 37 Copynumber: 3.6 Consensus size: 37
128451081 TTCCGGGTAA
*
128451091 CCGATGACTACGTATGGAGATTATGT--GGGTAAGA-
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
128451125 CCGATGACTACGTGTGGAGA-TATGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
*
128451161 CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
* *
128451198 CCGATAACTTCGTGTGGAGATT
1 CCGATGACTACGTGTGGAGATT
128451220 TCGTCTGAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
33 5 0.06
34 19 0.22
35 8 0.09
36 20 0.23
37 35 0.40
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (37 bp):
CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
Found at i:128452542 original size:39 final size:40
Alignment explanation
Indices: 128452487--128452829 Score: 587
Period size: 39 Copynumber: 8.8 Consensus size: 40
128452477 GAGAATTGAG
128452487 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452527 AGTGAT-TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128452566 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452605 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452645 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452684 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452723 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128452762 AGTGATATATCC-GGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
128452800 GGTG-T-TATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
128452830 ATCATGCTGG
Statistics
Matches: 291, Mismatches: 5, Indels: 16
0.93 0.02 0.05
Matches are distributed among these distances:
36 5 0.02
37 6 0.02
38 46 0.16
39 167 0.57
40 67 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:128452695 original size:118 final size:118
Alignment explanation
Indices: 128452487--128452829 Score: 581
Period size: 118 Copynumber: 2.9 Consensus size: 118
128452477 GAGAATTGAG
128452487 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCG
128452551 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
65 AAGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128452605 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
128452670 AGAGCATTCGTGCTAGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
128452723 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCC-GGCTAAACCCGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
* *
128452786 AGAGCATTCGTGCTGGTG-TTATCCGGGCTAGGTCCCGAAGAGCA
66 AGAGCATTCGTGCTAGTGATTATCCGGGCTAAGTCCCGAAGAGCA
128452830 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 5, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
114 5 0.02
115 19 0.09
116 27 0.12
117 38 0.18
118 114 0.53
119 14 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
AGAGCATTCGTGCTAGTGATTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:128457150 original size:25 final size:25
Alignment explanation
Indices: 128457075--128457150 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
128457065 GTGTATATAT
128457075 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
128457100 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
128457122 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
128457147 GTGA
1 GTGA
128457151 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:128457225 original size:93 final size:94
Alignment explanation
Indices: 128457048--128457279 Score: 358
Period size: 93 Copynumber: 2.5 Consensus size: 94
128457038 TTAGGATTTT
* ** * *
128457048 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
128457113 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* *
128457142 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCC-TTGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
128457206 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * *
128457235 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGC
1 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
128457280 TAGTGTGAAG
Statistics
Matches: 126, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
93 85 0.67
94 41 0.33
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:128457287 original size:47 final size:47
Alignment explanation
Indices: 128457048--128457279 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
128457038 TTAGGATTTT
** *
128457048 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
128457095 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
128457142 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
128457188 TTGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
128457235 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
128457280 TAGTGTGAAG
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 43 0.25
47 126 0.75
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:128457586 original size:37 final size:37
Alignment explanation
Indices: 128457442--128457585 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
128457432 GGAAATATAT
*
128457442 TCCGGGTGAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
128457478 TCCGGGTAAGACTCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
128457515 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
128457552 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
128457586 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 10 0.10
37 89 0.90
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:128459062 original size:119 final size:120
Alignment explanation
Indices: 128458851--128459315 Score: 746
Period size: 119 Copynumber: 3.9 Consensus size: 120
128458841 GAGAATTGAG
128458851 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
128458916 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCC-AAGAGCATTTGTGCT
66 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128458970 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
128459035 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCATGCT
66 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128459090 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATATCC-GGCTAAGTCCC-
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
** * *
128459153 AA-AGCA-TTCAGCTAGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
66 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
128459206 AGTGATATATCCGGGCTAAGTCCCGAAGAG-ATTCGTGCTAGTGATATATCCGGGCTAA-ACCCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
* * * * *
128459269 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
66 AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCA
128459316 ATCATGCTGG
Statistics
Matches: 322, Mismatches: 19, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
115 23 0.07
116 80 0.25
117 8 0.02
118 34 0.11
119 114 0.35
120 63 0.20
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTTGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:128459327 original size:40 final size:40
Alignment explanation
Indices: 128458851--128459315 Score: 746
Period size: 40 Copynumber: 11.8 Consensus size: 40
128458841 GAGAATTGAG
128458851 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128458891 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
128458931 AGTGATATATCCAGGCTAAGTCCC-AAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128458970 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128459010 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
128459050 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128459090 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128459130 AGTGATATATCC-GGCTAAGTCCC-AA-AGCATTC-AGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
128459166 AGTGATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
128459206 AGTGATATATCCGGGCTAAGTCCCGAAGAG-ATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
128459245 AGTGATATATCCGGGCTAA-ACCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
128459284 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
128459316 ATCATGCTGG
Statistics
Matches: 395, Mismatches: 23, Indels: 14
0.91 0.05 0.03
Matches are distributed among these distances:
36 15 0.04
37 16 0.04
38 12 0.03
39 110 0.28
40 242 0.61
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:128459537 original size:25 final size:25
Alignment explanation
Indices: 128459491--128459541 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
128459481 GTGTAATAAC
128459491 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
128459516 GAATG-ATTAGAGCAGCTGTGTGTGT
1 GAATGAATAAGAGCA-CTATGTGTGT
128459541 G
1 G
128459542 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:128463633 original size:25 final size:25
Alignment explanation
Indices: 128463558--128463633 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
128463548 GTGTATATAT
128463558 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
128463583 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
128463605 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
128463630 GTGA
1 GTGA
128463634 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:128463771 original size:47 final size:47
Alignment explanation
Indices: 128463531--128463763 Score: 349
Period size: 47 Copynumber: 5.0 Consensus size: 47
128463521 TTAGGATTTT
** *
128463531 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
128463578 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
128463625 ATGTGGTGAATATGAACATGCATATATGTGGTATGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
128463672 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
128463719 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
128463764 TAGTGTGAAG
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 166 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:128464071 original size:37 final size:37
Alignment explanation
Indices: 128463926--128464070 Score: 209
Period size: 37 Copynumber: 3.9 Consensus size: 37
128463916 GGAAATATAT
* *
128463926 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
* ** *
128463963 TCCGGGAAAGAATTGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
*
128464000 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
* *
128464037 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCTGATGACTACGTGTGGAGATT
128464071 TCGTCTAAGC
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
Found at i:128467764 original size:28 final size:28
Alignment explanation
Indices: 128467695--128467795 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
128467685 GACAAGATTG
* * * *
128467695 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
128467725 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
128467753 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
128467782 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
128467796 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:128475727 original size:28 final size:28
Alignment explanation
Indices: 128475658--128475758 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
128475648 GACAAGATTG
* * * *
128475658 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
128475688 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
128475716 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
128475745 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
128475759 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:128479849 original size:46 final size:46
Alignment explanation
Indices: 128479781--128479917 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
128479771 TATATATACA
* * * *
128479781 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
128479827 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
128479873 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
128479918 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:128479952 original size:47 final size:47
Alignment explanation
Indices: 128479891--128480226 Score: 501
Period size: 47 Copynumber: 7.1 Consensus size: 47
128479881 ACACATTTCG
* * * **
128479891 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
128479938 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
128479985 CACTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128480032 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** *
128480079 CATTGGCCATTCGGCTTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
128480130 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128480177 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128480224 CAT
1 CAT
128480227 AAAATCCTAA
Statistics
Matches: 264, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 221 0.84
49 2 0.01
51 41 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:128480162 original size:145 final size:141
Alignment explanation
Indices: 128479891--128480226 Score: 537
Period size: 145 Copynumber: 2.4 Consensus size: 141
128479881 ACACATTTCG
* * * **
128479891 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
128479956 ATCTCATATATGCATGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
66 ATCGCATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
128480021 CACATTCATCA
131 CACATTCATCA
*
128480032 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCTTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
128480097 ATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 AT--CGC--ATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCA
128480162 TGTTCACATTCATCA
127 TGTTCACATTCATCA
128480177 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
128480227 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 61 0.34
143 2 0.01
145 117 0.65
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (141 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCGCATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
CACATTCATCA
Found at i:128480227 original size:23 final size:23
Alignment explanation
Indices: 128480152--128480227 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
128480142 GGCCTTATCA
128480152 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
128480175 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
128480197 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
128480222 CACATA
1 CACATA
128480228 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:128484511 original size:40 final size:39
Alignment explanation
Indices: 128484468--128484901 Score: 501
Period size: 40 Copynumber: 10.9 Consensus size: 39
128484458 CACATCACTG
* * * *
128484468 GCACGAATACCCTTCGGGACTTAGCCCGGATATAACATCG
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
* * * * *
128484508 GCACGAATACCCTTCGGGATTTAGCCCGGATATAACACCG
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
* * * *
128484548 GCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACCG
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
*
128484588 GCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-A
* * * *
128484628 GCACGAATGCTCTTTGGAACTTAGCCCGAATATATCATTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
*
128484668 GCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-A
* * *
128484708 GCACGAATGCTCTTCGGAACTTAGCCCGGATATATGATTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
* * *
128484748 GCACGAATGCTCTTC-GAACTTAGCCCAGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-A
*
128484787 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA-CA
* *
128484827 GCACGAATGCTCTTCGGGACATAGCCCGGATACATCACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCAC-A
* *
128484867 GCACGAATGCTCTTCGGGACTTATCCCGAATATAT
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
128484902 ATAACTCTCA
Statistics
Matches: 351, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.10
40 316 0.90
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACA
Found at i:128484603 original size:80 final size:80
Alignment explanation
Indices: 128484459--128484901 Score: 600
Period size: 80 Copynumber: 5.5 Consensus size: 80
128484449 GCCCGAATAC
* * * * ** * *
128484459 ACATCACTGGCACGAATACCCTTCGGGACTTAGCCCGGATATAACATCGGCACGAATACCCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
*
128484524 GGATTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* * ** * * * ***
128484539 ATAACACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACCGGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
*
128484604 GAACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* * * *
128484619 ATATCACTAGCACGAATGCTCTTTGGAACTTAGCCCGAATATATCATTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
128484684 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
128484699 ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATGATTAGCACGAATGCTCTTC-
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
* *
128484763 GAACTTAGCCCAGAT
66 GGACTTAGCCCGGAT
128484778 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
*
128484843 GGACATAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
128484858 ACATCACTAGCACGAATGCTCTTCGGGACTTATCCCGAATATAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
128484902 ATAACTCTCA
Statistics
Matches: 326, Mismatches: 36, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
79 75 0.23
80 251 0.77
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCATTAGCACGAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:128484683 original size:120 final size:120
Alignment explanation
Indices: 128484461--128484901 Score: 564
Period size: 120 Copynumber: 3.7 Consensus size: 120
128484451 CCGAATACAC
* * * * * * * *
128484461 ATCACTGGCACGAATACCCTTCGGGACTTAGCCCGGATATAACA-TCGGCACGAATACCCTTCGG
1 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACT-AGCACGAATGCTCTTCGG
* * * * ** * *
128484525 GATTTAGCCCGGATATAACACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATAT
65 AACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* ** *
128484581 AACACCGGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGA
1 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
* *
128484646 ACTTAGCCCGAATATATCATTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
66 ACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
128484701 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATGATTAGCACGAATGCTCTTC-GA
1 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
*
128484765 ACTTAGCCC-AGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
66 ACTTAGCCCGA-ATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * * *
128484820 ATCATTAGCACGAATGCTCTTCGGGACATAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
1 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
*
128484885 ACTTATCCCGAATATAT
66 ACTTAGCCCGAATATAT
128484902 ATAACTCTCA
Statistics
Matches: 279, Mismatches: 38, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
118 1 0.00
119 108 0.39
120 168 0.60
121 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
ACTTAGCCCGAATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:128486474 original size:46 final size:46
Alignment explanation
Indices: 128486421--128486557 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
128486411 TATATATACA
* * * *
128486421 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
128486467 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
128486513 TATCTCATAAACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
128486558 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:128486593 original size:47 final size:47
Alignment explanation
Indices: 128486531--128486866 Score: 492
Period size: 47 Copynumber: 7.1 Consensus size: 47
128486521 AAACATTTCG
* * * **
128486531 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
128486578 CATTGTCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
128486625 CACTGGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128486672 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** *
128486719 CATTGGCCATTCGGCTTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
128486770 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128486817 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
128486864 CAT
1 CAT
128486867 AAAATCCTAA
Statistics
Matches: 262, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 219 0.84
49 2 0.01
51 41 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:128486801 original size:145 final size:141
Alignment explanation
Indices: 128486531--128486866 Score: 528
Period size: 145 Copynumber: 2.4 Consensus size: 141
128486521 AAACATTTCG
* * * ** *
128486531 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGTCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
128486596 ATCTCATATATGCATGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
66 ATCGCATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
128486661 CACATTCATCA
131 CACATTCATCA
*
128486672 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCTTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
128486737 ATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 AT--CGC--ATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCA
128486802 TGTTCACATTCATCA
127 TGTTCACATTCATCA
128486817 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
128486867 AAAATCCTAA
Statistics
Matches: 179, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 60 0.34
143 2 0.01
145 117 0.65
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (141 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCGCATATATACAGGTTCACATTCATCACACTGGCCATTCAGCCTTATCACACATACGCATGTT
CACATTCATCA
Found at i:128486867 original size:23 final size:23
Alignment explanation
Indices: 128486792--128486867 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
128486782 GGCCTTATCA
128486792 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
128486815 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
128486837 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
128486862 CACATA
1 CACATA
128486868 AAATCCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 5 0.13
23 17 0.45
24 11 0.29
25 5 0.13
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:128491467 original size:24 final size:23
Alignment explanation
Indices: 128491435--128491591 Score: 206
Period size: 24 Copynumber: 6.6 Consensus size: 23
128491425 ACCAAACGTT
* **
128491435 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
128491459 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
128491483 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
128491507 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
128491531 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
128491555 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
128491579 GCACACATAGTGC
1 GCACACATAGTGC
128491592 ATTTGAGATT
Statistics
Matches: 120, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
23 3 0.03
24 110 0.92
25 7 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:128491509 original size:48 final size:48
Alignment explanation
Indices: 128491435--128491591 Score: 271
Period size: 48 Copynumber: 3.3 Consensus size: 48
128491425 ACCAAACGTT
* **
128491435 GCACACATAGTGCT-TATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
128491483 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
128491531 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
128491579 GCACACATAGTGC
1 GCACACATAGTGC
128491592 ATTTGAGATT
Statistics
Matches: 105, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
48 101 0.96
49 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (48 bp):
GCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATC
Found at i:128491552 original size:72 final size:72
Alignment explanation
Indices: 128491457--128491591 Score: 252
Period size: 72 Copynumber: 1.9 Consensus size: 72
128491447 CTTATTATGT
*
128491457 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCA
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
128491522 TAGTAAA
66 TAGTAAA
*
128491529 TCGCACACATAGTGCTATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
128491592 ATTTGAGATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (72 bp):
TCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCA
TAGTAAA
Found at i:128501317 original size:40 final size:40
Alignment explanation
Indices: 128501262--128501489 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
128501252 GATGATAACG
*
128501262 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
128501302 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
128501342 GGGCT--GTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
128501380 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCC
*
128501420 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCC
*
128501460 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
128501490 AGCTATATCG
Statistics
Matches: 179, Mismatches: 5, Indels: 9
0.93 0.03 0.05
Matches are distributed among these distances:
38 36 0.20
39 4 0.02
40 137 0.77
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:128501398 original size:78 final size:79
Alignment explanation
Indices: 128501262--128501498 Score: 338
Period size: 78 Copynumber: 3.0 Consensus size: 79
128501252 GATGATAACG
* *
128501262 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
128501327 CTAGTGACTA-ATTCC
65 CGAGTGACTATA-TCC
128501342 GGGCT-GTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
128501406 GAGTTACTATATCC
66 GAGTGACTATATCC
** *
128501420 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
128501484 GCGAGT-AGCTATATC
64 GCGAGTGA-CTATATC
128501499 GGTTAAATCC
Statistics
Matches: 145, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
78 72 0.50
79 4 0.03
80 69 0.48
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (79 bp):
GGGCTAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTGACTATATCC
Found at i:128501514 original size:118 final size:118
Alignment explanation
Indices: 128501262--128501489 Score: 327
Period size: 118 Copynumber: 1.9 Consensus size: 118
128501252 GATGATAACG
* *
128501262 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
128501327 CTAGTGACTAATTCCGGGCTGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
66 CAACTGACTAATTCCGGGCTGTCCCGAAGGCATTTGAGCGAGTTACTAATTCC
* *
128501380 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
128501444 GCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
65 GC-AACTGACTAAT-TCCGGGCT--GTCCCGAAGGCATTTGAGCGAGT
128501490 AGCTATATCG
Statistics
Matches: 100, Mismatches: 5, Indels: 8
0.88 0.04 0.07
Matches are distributed among these distances:
117 4 0.04
118 72 0.72
119 2 0.02
120 22 0.22
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (118 bp):
GGGCTAAATCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CAACTGACTAATTCCGGGCTGTCCCGAAGGCATTTGAGCGAGTTACTAATTCC
Found at i:128504903 original size:24 final size:24
Alignment explanation
Indices: 128504871--128504957 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
128504861 AATCTCAAAT
128504871 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
128504895 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
128504919 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
128504943 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
128504958 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:128504923 original size:48 final size:48
Alignment explanation
Indices: 128504871--128504979 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
128504861 AATCTCAAAT
** *
128504871 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
128504919 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
128504967 GCACTATGTGTGC
1 GCACTATGTGTGC
128504980 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:128504970 original size:24 final size:24
Alignment explanation
Indices: 128504871--128504979 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
128504861 AATCTCAAAT
*
128504871 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
128504895 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
128504919 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
128504943 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
128504967 GCACTATGTGTGC
1 GCACTATGTGTGC
128504980 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:128520325 original size:71 final size:69
Alignment explanation
Indices: 128520227--128520401 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
128520217 CTTTTCAAGG
* *
128520227 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
128520291 GTTTT
65 GTTTT
** * *
128520296 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
128520361 TGTTTT
64 TGTTTT
** * *
128520367 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
128520402 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:128520521 original size:71 final size:71
Alignment explanation
Indices: 128520401--128520565 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
128520391 GAGTTAAGCC
** * *
128520401 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
128520465 TGA-GTA
65 TGAGGTA
*
128520471 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
128520536 TGAGGTA
65 TGAGGTA
* *
128520543 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
128520566 ACGTTGTTCA
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
70 4 0.05
71 61 0.72
72 20 0.24
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:128520663 original size:140 final size:140
Alignment explanation
Indices: 128520498--128521124 Score: 1159
Period size: 140 Copynumber: 4.5 Consensus size: 140
128520488 TTAATTTCAA
128520498 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520563 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
128520628 TCAAAATCTG
131 TCAAAATCAG
128520638 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520703 TTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
128520768 TCAAAATCAG
131 TCAAAATCAG
128520778 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520842 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
128520907 TCAAAATCAG
131 TCAAAATCAG
128520917 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520982 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
128521047 TCAAAATCAG
131 TCAAAATCAG
128521057 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
128521121 TCAA
62 TCAA
128521125 AAAAAAAATT
Statistics
Matches: 475, Mismatches: 7, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
139 139 0.29
140 307 0.65
142 23 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:128520843 original size:279 final size:280
Alignment explanation
Indices: 128520498--128521124 Score: 1159
Period size: 279 Copynumber: 2.2 Consensus size: 280
128520488 TTAATTTCAA
128520498 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520563 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
*
128520628 TCAAAATCTGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
128520693 CTGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
128520758 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
128520778 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
128520842 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
128520907 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
**
128520972 CTGTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
128521037 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
128521057 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
128521121 TCAA
62 TCAA
128521125 AAAAAAAATT
Statistics
Matches: 337, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
278 2 0.01
279 268 0.80
280 39 0.12
281 3 0.01
282 19 0.06
283 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (280 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
CTGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
TTCTACTTTTTCAAAATCAG
Found at i:128520980 original size:13 final size:13
Alignment explanation
Indices: 128520962--128520995 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
128520952 CGCTGAGGTA
*
128520962 TTTTCAATTTCTG
1 TTTTCAATTTATG
128520975 TTTTCAATTTATG
1 TTTTCAATTTATG
128520988 TTGTTCAA
1 TT-TTCAA
128520996 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:128521242 original size:72 final size:72
Alignment explanation
Indices: 128521044--128521269 Score: 276
Period size: 72 Copynumber: 3.0 Consensus size: 72
128521034 AATTTCTACT
* ** * * * *
128521044 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
128521107 TCAATTTCTG
63 TCAATTTCTG
128521117 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
128521182 AATTTCAATTTCTG
59 AATTTCAATTTCTG
*
128521196 TTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
128521261 ATTTCTG
66 ATTTCTG
128521268 TT
1 TT
128521270 CAAAATGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 24 0.18
80 4 0.03
81 30 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:128521280 original size:49 final size:49
Alignment explanation
Indices: 128521223--128521318 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
128521213 ATATTGTGAG
128521223 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
128521272 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
128521319 TTCAAAATTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
Found at i:128521365 original size:121 final size:121
Alignment explanation
Indices: 128521151--128521390 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
128521141 ATATTGCGAG
128521151 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
128521216 TTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
128521272 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
128521337 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
128521391 TTTCAAAAAA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:128521523 original size:75 final size:75
Alignment explanation
Indices: 128521272--128521624 Score: 455
Period size: 77 Copynumber: 4.7 Consensus size: 75
128521262 TTTCTGTTCA
* * *
128521272 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
128521334 ATATTGCGAG
66 ATATTGCGAG
* *
128521344 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAATCAAC
*
128521409 TCATATTGTGAG
64 TCATATTGCGAG
*
128521421 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
128521486 ATATTGCGAG
66 ATATTGCGAG
** * * *
128521496 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
128521560 GTATTGTGAG
66 ATATTGCGAG
*** * *
128521570 AGGCGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCT-GAGGTATTTTCAATTTCTGTTTTTCAA
128521625 TTTCTGCCTT
Statistics
Matches: 252, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 41 0.16
73 5 0.02
74 44 0.17
75 64 0.25
76 22 0.09
77 76 0.30
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:128521745 original size:76 final size:77
Alignment explanation
Indices: 128521618--128522208 Score: 349
Period size: 88 Copynumber: 7.2 Consensus size: 77
128521608 CAATTTCCGT
**
128521618 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
128521682 CACGCGCT-AGCTA
64 CACACGCTGAGCTA
* * *
128521695 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
128521759 ACACACTGAGGTA
65 ACACGCTGAGCTA
* * * * * *
128521772 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGA-ATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
128521836 CACATG-TCGAGGTA
64 CACACGCT-GAGCTA
** *
128521850 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
128521915 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACACGCTGAGCTA
*
128521938 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG----TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---C
** * * *
128522003 TAATTTCTGCAGA-GTTGAGTTGA
58 T--TGGCT-CACACGCTGAGCT-A
* * * * **
128522026 GTCTTTTAATTTCTATTTTT--TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
** *
128522088 TCACA-TATCGAGGTA
63 TCACACGCT-GAGCTA
*
128522103 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
128522167 AGCCTTGGCTCACGCGCTGAGCTA
54 AGCCTTGGCTCACACGCTGAGCTA
*
128522191 TTTTCAATTTCTATTTTT
1 TTTTCAATTTCTGTTTTT
128522209 AATGTCTGTT
Statistics
Matches: 402, Mismatches: 62, Indels: 101
0.71 0.11 0.18
Matches are distributed among these distances:
75 19 0.05
76 50 0.12
77 31 0.08
78 28 0.07
79 42 0.10
80 5 0.01
81 5 0.01
82 29 0.07
83 33 0.08
84 7 0.02
85 1 0.00
86 7 0.02
87 33 0.08
88 91 0.23
89 3 0.01
90 10 0.02
91 1 0.00
92 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:128521772 original size:168 final size:165
Alignment explanation
Indices: 128521453--128521775 Score: 438
Period size: 168 Copynumber: 1.9 Consensus size: 165
128521443 TGCTGAGGTA
**
128521453 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
128521518 CGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGC
66 CGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
* *
128521583 CTCAGGTCACACGTCGAGGTATTTTCAATTTCCGT
131 CTCAGATCACACCTCGAGGTATTTTCAATTTCCGT
*
128521618 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
* * * *
128521681 TCACGC-GCTAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
63 ACACGCTG--AGCTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAG
*
128521745 TTGAGCTTCAGATCACACACT-GAGGTATTTT
125 TTGAGCCTCAGATCACAC-CTCGAGGTATTTT
128521776 TTCAATTTAT
Statistics
Matches: 138, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
165 20 0.14
166 30 0.22
167 30 0.22
168 57 0.41
169 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (165 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGCTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
CTCAGATCACACCTCGAGGTATTTTCAATTTCCGT
Found at i:128521849 original size:78 final size:77
Alignment explanation
Indices: 128521639--128521853 Score: 233
Period size: 79 Copynumber: 2.8 Consensus size: 77
128521629 TGCCTTTCAA
* * *
128521639 AAAAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC-GCGCTAGCTA--TTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAGCG--AGGTATTTTTTC
* *
128521700 AATTTCTGTCTTTC
64 AATTTATATCTTTC
* * *
128521714 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA-GC-GAGGTATTTTTTC
*
128521779 AATTTATATTTTTC
64 AATTTATATCTTTC
* * *
128521793 AAAAAAATCAACTCACATTGCGA-ATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA-G-CGAGGTATTTT
128521854 CAAAATCTGT
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
75 13 0.11
76 29 0.25
77 4 0.03
78 31 0.26
79 40 0.34
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACAGCGAGGTATTTTTTCAA
TTTATATCTTTC
Found at i:128522026 original size:29 final size:29
Alignment explanation
Indices: 128521984--128522039 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
128521974 TCATATTGCG
128521984 AGAGGTGAGTTGAG-CTTTTTAATTTCTGC
1 AGAGGTGAGTTGAGTC-TTTTAATTTCTGC
*
128522013 AGAGTTGAGTTGAGTCTTTTAATTTCT
1 AGAGGTGAGTTGAGTCTTTTAATTTCT
128522040 ATTTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.25, T:0.45
Consensus pattern (29 bp):
AGAGGTGAGTTGAGTCTTTTAATTTCTGC
Found at i:128522111 original size:253 final size:247
Alignment explanation
Indices: 128521444--128522208 Score: 879
Period size: 253 Copynumber: 3.1 Consensus size: 247
128521434 CTCAAGACAT
*
128521444 GCTGAGGTATTTTCAATTTCTG---TT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 GCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * * * * *
128521505 GAGCCTCAG--GACACGCTGAGGTA--ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTG
66 GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAAATCAACTCATATTG
* * * ** * *
128521566 TGAGAGGCGAGTTGAGCCT-CAGGTCACACGTCGAGGTATTTTCAATTTCCGTTTTTCAATTTCT
131 CGAGAGGTGAGTTGAGCCTCCA-GTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCT
128521630 GCCTTTCAAAAAAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
195 G--TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
128521687 GCT-AGCTATTTTCAATTTCTG----TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 GCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
128521747 GAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATT
66 GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTT-AAAAAAATCAACTCATATT
* **
128521812 GCGA-ATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTC
130 GCGAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTC
* *
128521875 TGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
194 TG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
128521929 GCTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
1 GCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGT
* * * * * * *
128521994 TGAGCTTTTTA-ATTTCTGCAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTT-TAAAAATCAA
65 TGAGC--TTCAGA--TC-ACACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTAAAAAAATCAA
* * *
128522056 CTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTT
122 CTCATATTGCGAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTT
**
128522121 CAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
187 CAAGTTCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
128522182 GCTGAGCTATTTTCAATTTCTATTTTT
1 GCTGAGCTATTTTCAATTTCTGTTTTT
128522209 AATGTCTGTT
Statistics
Matches: 451, Mismatches: 45, Indels: 42
0.84 0.08 0.08
Matches are distributed among these distances:
241 12 0.03
242 98 0.22
243 21 0.05
244 12 0.03
245 5 0.01
246 62 0.14
247 32 0.07
248 30 0.07
249 1 0.00
250 3 0.01
251 2 0.00
252 27 0.06
253 126 0.28
254 15 0.03
255 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (247 bp):
GCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAAATCAACTCATATTG
CGAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
Found at i:128522907 original size:22 final size:22
Alignment explanation
Indices: 128522855--128522914 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
128522845 GCCCATTAAG
128522855 CCCCCC-AAAAAAAAAACCTAA
1 CCCCCCAAAAAAAAAAACCTAA
****
128522876 CCAAAAAAAAAAAAAAACCTAA
1 CCCCCCAAAAAAAAAAACCTAA
128522898 CCCCCCAAAAAAAAAAA
1 CCCCCCAAAAAAAAAAA
128522915 GAAACCCTAG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.67, C:0.30, G:0.00, T:0.03
Consensus pattern (22 bp):
CCCCCCAAAAAAAAAAACCTAA
Found at i:128526523 original size:17 final size:19
Alignment explanation
Indices: 128526489--128526531 Score: 63
Period size: 17 Copynumber: 2.3 Consensus size: 19
128526479 GCTCGGTCGA
128526489 AATAGAAACCAAATAAAAAT
1 AATA-AAACCAAATAAAAAT
128526509 AATAAAACC-AA-AAAAAT
1 AATAAAACCAAATAAAAAT
128526526 AATAAA
1 AATAAA
128526532 TCAAAAGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.52
18 2 0.09
19 5 0.22
20 4 0.17
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.14
Consensus pattern (19 bp):
AATAAAACCAAATAAAAAT
Found at i:128526529 original size:20 final size:20
Alignment explanation
Indices: 128526489--128526530 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
128526479 GCTCGGTCGA
*
128526489 AATAGAAACCAAATAAAAAT
1 AATAGAAACCAAAAAAAAAT
128526509 AATA-AAACCAAAAAAATAAT
1 AATAGAAACCAAAAAAA-AAT
128526529 AA
1 AA
128526531 ATCAAAAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.74, C:0.10, G:0.02, T:0.14
Consensus pattern (20 bp):
AATAGAAACCAAAAAAAAAT
Found at i:128526594 original size:18 final size:18
Alignment explanation
Indices: 128526571--128526605 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
128526561 CCAATTTTAC
*
128526571 AAATTACAAAACCCTAAA
1 AAATTAAAAAACCCTAAA
*
128526589 AAATTAAAAAATCCTAA
1 AAATTAAAAAACCCTAA
128526606 TGGCCCAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.17, G:0.00, T:0.20
Consensus pattern (18 bp):
AAATTAAAAAACCCTAAA
Found at i:128530631 original size:25 final size:24
Alignment explanation
Indices: 128530593--128530640 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
128530583 ATTTAATTTT
* * *
128530593 TTTTCTTTTTCTTTCTTTATTTTCC
1 TTTTCTTCTCCTTTATTT-TTTTCC
128530618 TTTTCTTCTCCTTTATTTTTTTC
1 TTTTCTTCTCCTTTATTTTTTTC
128530641 TCTTCTCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTCTTCTCCTTTATTTTTTTCC
Found at i:128530646 original size:20 final size:20
Alignment explanation
Indices: 128530593--128530647 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
128530583 ATTTAATTTT
128530593 TTTTCTTTTTCTT-T-CTTTA
1 TTTTC-TTTTCTTCTCCTTTA
128530612 TTTTCCTTTTCTTCTCCTTTA
1 TTTT-CTTTTCTTCTCCTTTA
128530633 TTTT-TTTCTCTTCTC
1 TTTTCTTT-TCTTCTC
128530648 ATATTCTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 14 0.44
20 9 0.28
21 9 0.28
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTCTTCTCCTTTA
Found at i:128531560 original size:44 final size:44
Alignment explanation
Indices: 128531507--128531595 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
128531497 GTAAGAAGAC
*
128531507 ATAAGGGGAAGCAGAAGAGAATGAAAAATAAAGAAAGAAAAAAA
1 ATAAGGGGAAGCAAAAGAGAATGAAAAATAAAGAAAGAAAAAAA
128531551 ATAAGGGGAAGCAAAAGAGAATGAAAAATAAAGAAAGAAAAAAA
1 ATAAGGGGAAGCAAAAGAGAATGAAAAATAAAGAAAGAAAAAAA
128531595 A
1 A
128531596 GGTAAGTTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (44 bp):
ATAAGGGGAAGCAAAAGAGAATGAAAAATAAAGAAAGAAAAAAA
Found at i:128534641 original size:7 final size:7
Alignment explanation
Indices: 128534629--128534653 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
128534619 CCATCATTCC
128534629 AAAATAA
1 AAAATAA
128534636 AAAATAA
1 AAAATAA
128534643 AAAATAA
1 AAAATAA
128534650 AAAA
1 AAAA
128534654 AAATCCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:128539764 original size:5 final size:5
Alignment explanation
Indices: 128539754--128539779 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
128539744 ATTCCAACAC
128539754 TTTCT TTTCT TTTCT TTTCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT T
128539780 GAGAGTTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:128540140 original size:30 final size:31
Alignment explanation
Indices: 128540092--128540151 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
128540082 TAAAATTTTT
* *
128540092 TATATACCTTAAATTTTAATTGTGATTTAAA
1 TATATACCTTAAAATTTAATTGTAATTTAAA
*
128540123 TATATA-CTTAAAATTTAATTTTAATTTAA
1 TATATACCTTAAAATTTAATTGTAATTTAA
128540152 TCATACATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (31 bp):
TATATACCTTAAAATTTAATTGTAATTTAAA
Found at i:128540336 original size:43 final size:43
Alignment explanation
Indices: 128540288--128540375 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
128540278 AATAGATCAA
128540288 ATCAAAATTTCATGTATAAAATTACACAAAATTAAAATTACAC
1 ATCAAAATTTCATGTATAAAATTACACAAAATTAAAATTACAC
*
128540331 ATCAAAATTTCATGTATAAAATTACATAAAATTAAAATTACAC
1 ATCAAAATTTCATGTATAAAATTACACAAAATTAAAATTACAC
128540374 AT
1 AT
128540376 TAAACCATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.32
Consensus pattern (43 bp):
ATCAAAATTTCATGTATAAAATTACACAAAATTAAAATTACAC
Found at i:128540700 original size:2 final size:2
Alignment explanation
Indices: 128540693--128540722 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
128540683 CAAGAGACAA
128540693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128540723 TAGTAACTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128541903 original size:31 final size:32
Alignment explanation
Indices: 128541853--128541912 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 32
128541843 CCGAGGCCCA
* *
128541853 GCCTATTTTTTTGCCCAAA-CTCATATTTCGG
1 GCCTATATTTTTACCCAAACCTCATATTTCGG
* *
128541884 GCCTATATTTTTACTCAAACCTCCTATTT
1 GCCTATATTTTTACCCAAACCTCATATTT
128541913 TTCGGGCGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 16 0.67
32 8 0.33
ACGTcount: A:0.22, C:0.27, G:0.08, T:0.43
Consensus pattern (32 bp):
GCCTATATTTTTACCCAAACCTCATATTTCGG
Found at i:128542445 original size:3 final size:3
Alignment explanation
Indices: 128542437--128542493 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
128542427 ATTGTTATGA
128542437 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
128542485 AAT AAT AAT
1 AAT AAT AAT
128542494 GTAAACAACA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:128545221 original size:27 final size:26
Alignment explanation
Indices: 128545169--128545228 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
128545159 ATATATATAT
*
128545169 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
128545195 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
128545222 ATATCTG
1 ATATCTG
128545229 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:128552602 original size:2 final size:2
Alignment explanation
Indices: 128552595--128552628 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
128552585 TGGCTTCGCC
128552595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128552629 GTATCTGTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128552670 original size:27 final size:26
Alignment explanation
Indices: 128552630--128552688 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
128552620 TATATATATG
*
128552630 TATCTGTTCTGGTGGCCTAGCCACAA
1 TATCTGTTCTGGTGACCTAGCCACAA
* * *
128552656 TATCTGTATCTGGTGACTTCGTCACAA
1 TATCTGT-TCTGGTGACCTAGCCACAA
128552683 TATCTG
1 TATCTG
128552689 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
TATCTGTTCTGGTGACCTAGCCACAA
Found at i:128558046 original size:40 final size:40
Alignment explanation
Indices: 128558001--128558130 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
128557991 CGGAATATAA
* *
128558001 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAAC
* ** * *
128558041 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
128558081 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
128558121 CCGGATATAA
1 CCGGATATAA
128558131 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 72 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:128558145 original size:40 final size:40
Alignment explanation
Indices: 128558017--128558168 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
128558007 ATAACCATGT
* * * *
128558017 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATCAC-CA
* ** *
128558057 GCACGAA-TGCCTTCGGGTCTTAACCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATCACCA
**
128558097 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATCACCA
* * * *
128558137 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
128558169 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAATCACCA
Found at i:128560514 original size:2 final size:2
Alignment explanation
Indices: 128560507--128560547 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
128560497 TCGATCGGAG
128560507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
128560548 GAGTACGCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:128560672 original size:29 final size:29
Alignment explanation
Indices: 128560640--128560770 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
128560630 CTTCGAGCTC
128560640 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
128560669 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
128560698 GCACACTCAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
128560727 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
128560756 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
128560771 ATCTCGTCAC
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:128560673 original size:58 final size:58
Alignment explanation
Indices: 128560582--128560770 Score: 238
Period size: 58 Copynumber: 3.3 Consensus size: 58
128560572 ACTCAATTTC
* * ** * *** *
128560582 GCACACTTAGTGCCATGAGATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
*
128560639 CGCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
* *
128560698 GCACACTCAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
128560756 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
128560771 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
57 5 0.04
58 110 0.95
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
Found at i:128560702 original size:87 final size:87
Alignment explanation
Indices: 128560611--128560770 Score: 250
Period size: 87 Copynumber: 1.8 Consensus size: 87
128560601 ATTTAAGCCC
* *
128560611 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCATGCACAC
128560675 TCAGTGCCATATTTTTCCAGCAT
65 TCAGTGCCATATTTTTCCAGCAT
* * *
128560698 GCACACTCAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
*
128560763 TAGTGCCA
66 CAGTGCCA
128560771 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
87 65 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (87 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
CAGTGCCATATTTTTCCAGCAT
Found at i:128563206 original size:13 final size:13
Alignment explanation
Indices: 128563188--128563248 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
128563178 ACATATCTAC
128563188 TTTCATATAACCA
1 TTTCATATAACCA
* *
128563201 TTTCATATATCTA
1 TTTCATATAACCA
* *
128563214 TTTCCGTATAATC-
1 TTT-CATATAACCA
*
128563227 TATTCATATAAGCA
1 T-TTCATATAACCA
128563241 TTTCATAT
1 TTTCATAT
128563249 CTATCAAGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
13 29 0.78
14 8 0.22
ACGTcount: A:0.33, C:0.18, G:0.03, T:0.46
Consensus pattern (13 bp):
TTTCATATAACCA
Found at i:128563562 original size:26 final size:26
Alignment explanation
Indices: 128563528--128563587 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
128563518 CAAAGTCTGC
*
128563528 TAAAAATACACCAGCACAAAACTTGA
1 TAAATATACACCAGCACAAAACTTGA
* ** * *
128563554 TAAGTATACACTGGCACGAAGCTTGA
1 TAAATATACACCAGCACAAAACTTGA
128563580 TAAATATA
1 TAAATATA
128563588 AAATCCATAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.22
Consensus pattern (26 bp):
TAAATATACACCAGCACAAAACTTGA
Found at i:128565403 original size:30 final size:30
Alignment explanation
Indices: 128565367--128565467 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
128565357 GACAAGATTG
* * *
128565367 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128565397 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128565425 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
128565454 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
128565468 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:128565479 original size:29 final size:28
Alignment explanation
Indices: 128565396--128565471 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
128565386 AAAATTGTAC
* *
128565396 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
128565424 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
128565453 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
128565472 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:128573294 original size:30 final size:30
Alignment explanation
Indices: 128573258--128573358 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
128573248 GACAAGATTG
* * *
128573258 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128573288 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
128573316 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
128573345 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
128573359 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:128573370 original size:29 final size:28
Alignment explanation
Indices: 128573287--128573362 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
128573277 AAAATTGTAC
* *
128573287 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
128573315 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
128573344 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
128573363 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:128577338 original size:30 final size:30
Alignment explanation
Indices: 128577304--128577364 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
128577294 TCCTTAACTC
128577304 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
128577334 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
128577364 A
1 A
128577365 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:128581777 original size:30 final size:30
Alignment explanation
Indices: 128581743--128581803 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
128581733 TCCTTAACTC
128581743 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
128581773 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
128581803 A
1 A
128581804 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:128586225 original size:30 final size:30
Alignment explanation
Indices: 128586191--128586251 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
128586181 TCCTTAACTC
128586191 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
128586221 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
128586251 A
1 A
128586252 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:128590676 original size:30 final size:30
Alignment explanation
Indices: 128590642--128590702 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
128590632 TCCTTAACTC
128590642 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
128590672 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
128590702 A
1 A
128590703 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:128599354 original size:29 final size:29
Alignment explanation
Indices: 128599321--128599509 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
128599311 GTGACGAGAT
128599321 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
128599350 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
128599379 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
128599408 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
128599437 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
128599466 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
128599495 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
128599510 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:128601997 original size:39 final size:39
Alignment explanation
Indices: 128601942--128602120 Score: 286
Period size: 39 Copynumber: 4.6 Consensus size: 39
128601932 TTCCAACCCA
* *
128601942 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
128601981 AATGCCTTTGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
128602020 AATGCCTTCGGGACATAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
128602059 AATGCCTTCGGAACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
128602098 AATGCCTTCGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
128602121 TTAAAATCCT
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 127 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:128610012 original size:39 final size:39
Alignment explanation
Indices: 128609957--128610174 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 39
128609947 TTCCAACCCA
* * *
128609957 AATGCCTTCGGAACTTAGCCCGGATGTAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
128609996 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
128610035 AATGCCTTTGGGACTTAGCTCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
** *
128610074 AATGCCTTTAGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
128610113 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
128610152 AATGCCTTCGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
128610175 TTAAAATCCT
Statistics
Matches: 164, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 164 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:128615186 original size:40 final size:40
Alignment explanation
Indices: 128615078--128615187 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
128615068 ATTGAATGAT
* * * * *
128615078 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
128615118 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
128615158 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
128615188 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:128615202 original size:40 final size:39
Alignment explanation
Indices: 128615078--128615227 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
128615068 ATTGAATGAT
* * * * * * *
128615078 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
128615118 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
128615158 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
128615198 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
128615228 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:128623216 original size:40 final size:40
Alignment explanation
Indices: 128623108--128623217 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
128623098 ATTGAATGAT
* * * * *
128623108 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
128623148 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
128623188 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
128623218 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:128623232 original size:40 final size:39
Alignment explanation
Indices: 128623108--128623257 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
128623098 ATTGAATGAT
* * * * * * *
128623108 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
128623148 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
128623188 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
128623228 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
128623258 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:128632811 original size:39 final size:39
Alignment explanation
Indices: 128632690--128632880 Score: 165
Period size: 40 Copynumber: 4.8 Consensus size: 39
128632680 GGATATAACG
* *
128632690 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGTT-TAGTA
*
128632730 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCC-GGTTTAGTA
* *
128632770 ACTCGCACAAATGCCTTCGGG-CTTACCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGG-TTTAGTA
* * ** * *
128632809 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGG-TTTAGTA
** *
128632849 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGG
128632881 ACATCATTCA
Statistics
Matches: 127, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.03
39 29 0.23
40 79 0.62
41 15 0.12
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTAGTA
Found at i:128640400 original size:29 final size:28
Alignment explanation
Indices: 128640354--128640433 Score: 121
Period size: 27 Copynumber: 2.9 Consensus size: 28
128640344 ACTGTGTGCA
128640354 CTGGAAAATATGGCACTAAGTGTGCGTG
1 CTGGAAAATATGGCACTAAGTGTGCGTG
*
128640382 CTGGAAATATATGGCACTAA--GTGCATG
1 CTGGAAA-ATATGGCACTAAGTGTGCGTG
128640409 CTGG-AAATATGGCACTAAGTGTGCG
1 CTGGAAAATATGGCACTAAGTGTGCG
128640434 AGCTCGAAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.26
26 2 0.04
27 14 0.30
28 7 0.15
29 12 0.26
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (28 bp):
CTGGAAAATATGGCACTAAGTGTGCGTG
Found at i:128640405 original size:27 final size:26
Alignment explanation
Indices: 128640354--128640429 Score: 109
Period size: 25 Copynumber: 2.8 Consensus size: 26
128640344 ACTGTGTGCA
*
128640354 CTGGAAAATATGGCACTAAGTGTGCGTG
1 CTGGAAAATATGGCACTAA--GTGCATG
128640382 CTGGAAATATATGGCACTAAGTGCATG
1 CTGGAAA-ATATGGCACTAAGTGCATG
128640409 CTGG-AAATATGGCACTAAGTG
1 CTGGAAAATATGGCACTAAGTG
128640430 TGCGAGCTCG
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 15 0.33
26 2 0.04
27 10 0.22
28 7 0.15
29 12 0.26
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (26 bp):
CTGGAAAATATGGCACTAAGTGCATG
Found at i:128640450 original size:29 final size:29
Alignment explanation
Indices: 128640417--128640492 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
128640407 TGCTGGAAAT
* *
128640417 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
128640446 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
128640475 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
128640493 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:128648290 original size:29 final size:29
Alignment explanation
Indices: 128648248--128648362 Score: 221
Period size: 29 Copynumber: 4.0 Consensus size: 29
128648238 TGGCACTAAG
128648248 TGCTGGAAATATATGGCACTAAGTGTGCA
1 TGCTGGAAATATATGGCACTAAGTGTGCA
*
128648277 TGCTGGAAATATATGGCACTAAGTGTGCG
1 TGCTGGAAATATATGGCACTAAGTGTGCA
128648306 TGCTGGAAATATATGGCACTAAGTGTGCA
1 TGCTGGAAATATATGGCACTAAGTGTGCA
128648335 TGCTGGAAATATATGGCACTAAGTGTGC
1 TGCTGGAAATATATGGCACTAAGTGTGC
128648363 GAGCTCGAAG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (29 bp):
TGCTGGAAATATATGGCACTAAGTGTGCA
Found at i:128648379 original size:29 final size:29
Alignment explanation
Indices: 128648249--128648422 Score: 183
Period size: 29 Copynumber: 6.0 Consensus size: 29
128648239 GGCACTAAGT
*
128648249 GCTGGAAATATATGGCACTAAGTGTGC-A
1 GCTGGAAATACATGGCACTAAGTGTGCGA
* *
128648277 TGCTGGAAATATATGGCACTAAGTGTGCGT
1 -GCTGGAAATACATGGCACTAAGTGTGCGA
*
128648307 GCTGGAAATATATGGCACTAAGTGTGC-A
1 GCTGGAAATACATGGCACTAAGTGTGCGA
*
128648335 TGCTGGAAATATATGGCACTAAGTGTGCGA
1 -GCTGGAAATACATGGCACTAAGTGTGCGA
* *** * *
128648365 GCTCGAAGGGCATGGCACTATGTGTGCGG
1 GCTGGAAATACATGGCACTAAGTGTGCGA
* *
128648394 GCT-TAAATCGCATGGCACTAAGTGTGCGA
1 GCTGGAAAT-ACATGGCACTAAGTGTGCGA
128648423 AATCGAGTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
28 2 0.02
29 124 0.98
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
GCTGGAAATACATGGCACTAAGTGTGCGA
Found at i:128648380 original size:58 final size:58
Alignment explanation
Indices: 128648260--128648422 Score: 202
Period size: 58 Copynumber: 2.8 Consensus size: 58
128648250 CTGGAAATAT
* * * *
128648260 ATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAAGAC
* *
128648318 ATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAAGAC
* ** * **
128648376 ATGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
128648423 AATCGAGTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
57 4 0.04
58 88 0.96
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (58 bp):
ATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAAGAC
Found at i:128648380 original size:87 final size:87
Alignment explanation
Indices: 128648248--128648420 Score: 224
Period size: 87 Copynumber: 2.0 Consensus size: 87
128648238 TGGCACTAAG
* * * *
128648248 TGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGA
1 TGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGACATGGCACTAAGTGTGCGGGCT-GA
*
128648313 AAT-ATATGGCACTAAGTGTGCA
65 AATCACATGGCACTAAGTGTGCA
* * * *
128648335 TGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGCATGGCACTATGTGTGCGGGCTTA
1 TGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGACATGGCACTAAGTGTGCGGGCTGA
*
128648399 AATCGCATGGCACTAAGTGTGC
65 AATCACATGGCACTAAGTGTGC
128648421 GAAATCGAGT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
86 4 0.05
87 69 0.93
88 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (87 bp):
TGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGACATGGCACTAAGTGTGCGGGCTGAA
ATCACATGGCACTAAGTGTGCA
Found at i:128653526 original size:40 final size:39
Alignment explanation
Indices: 128653443--128653634 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
128653433 TTGAATGATG
* * * * *
128653443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
128653483 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
128653523 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
128653562 CCCGGGTTAAGTCGCGAAGGCATTCGAGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTCGTGCGAGTTAATA-AA
** * *
128653603 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
128653635 CGTTATATCC
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 34 0.27
40 83 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:128653593 original size:79 final size:81
Alignment explanation
Indices: 128653443--128653634 Score: 223
Period size: 79 Copynumber: 2.4 Consensus size: 81
128653433 TTGAATGATG
* * * *
128653443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
128653507 CGTGCGAGTTAATA-AA
65 CGAGCGAGTTAATATAA
* **
128653523 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCGCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATC-CGAAGGCATT
*
128653586 CGAGCGAGTTACTATAA
65 CGAGCGAGTTAATATAA
** *
128653603 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
128653635 CGTTATATCC
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 54 0.56
80 40 0.42
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GAGCGAGTTAATATAA
Found at i:128653649 original size:79 final size:78
Alignment explanation
Indices: 128653443--128653659 Score: 199
Period size: 79 Copynumber: 2.7 Consensus size: 78
128653433 TTGAATGATG
* * * * *
128653443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAGATCCGAAGGCATT
*
128653507 CGTGCGAGTTAATAAA
63 CGAGCGAGTTAATAAA
* * * *
128653523 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCGCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGATC-CGAAGGCATTC
*
128653587 GAGCGAGTTACTATAA
64 GAGCGAGTTAATA-AA
** **
128653603 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAA-ATTCCGAAG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGA-TCCGAAG
128653660 ATACGTGATT
Statistics
Matches: 114, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
78 2 0.02
79 63 0.55
80 49 0.43
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGATCCGAAGGCATTCGA
GCGAGTTAATAAA
Found at i:128660463 original size:78 final size:80
Alignment explanation
Indices: 128660329--128660511 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 80
128660319 TCGAATGATG
* *
128660329 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
128660393 GTGCGAGTTACTA-A
66 ATGCGAGTTACTATA
* * **
128660407 TCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
128660470 TATGCGAGTTACTATA
65 TATGCGAGTTACTATA
* *
128660486 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
128660512 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 60 0.65
79 17 0.18
80 14 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATA
Found at i:128660476 original size:40 final size:40
Alignment explanation
Indices: 128660329--128660511 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
128660319 TCGAATGATG
* * *
128660329 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
128660368 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
128660407 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
128660446 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
128660487 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
128660512 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.19
39 33 0.26
40 62 0.48
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:128665214 original size:20 final size:20
Alignment explanation
Indices: 128665191--128665228 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
128665181 CACATCCAAA
*
128665191 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
128665211 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
128665229 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:128669659 original size:40 final size:40
Alignment explanation
Indices: 128669551--128669720 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
128669541 CGGGATTTAA
* * * * *
128669551 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
128669591 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
128669631 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
128669671 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
128669711 CCGGATATAT
1 CCGGATATAT
128669721 TTTCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:128676451 original size:20 final size:20
Alignment explanation
Indices: 128676428--128676465 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
128676418 CACATCCAAA
*
128676428 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
128676448 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
128676466 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:128677115 original size:40 final size:39
Alignment explanation
Indices: 128677070--128677253 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
128677060 GCTACTCATT
*
128677070 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
* * *
128677110 TAAATGCCTTCGAGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCC-GGTTATAGTAACTCGCA
* * * *
128677150 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTAAATCACA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * *
128677189 CAAATGCCTTCGGATCTTAGTCCGAATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
128677230 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
128677254 ACATCATTCG
Statistics
Matches: 115, Mismatches: 21, Indels: 16
0.76 0.14 0.11
Matches are distributed among these distances:
38 1 0.01
39 32 0.28
40 68 0.59
41 14 0.12
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:128677171 original size:79 final size:80
Alignment explanation
Indices: 128677070--128677254 Score: 191
Period size: 79 Copynumber: 2.3 Consensus size: 80
128677060 GCTACTCATT
* * * * * *
128677070 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAAT-TAGTAAATCACACAAATGCCTTCG-GATCTTAACCC
* *
128677133 -AGATTTAGTAAC-TCGCA
63 GA-ATATAGTAACTTAGCA
**
128677150 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAATCACACAAATGCCTTCGGATCTTAGTCCGAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAATCACACAAATGCCTTCGGATCTTAACCCGAA
*
128677215 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
128677230 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
128677255 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.62
80 32 0.36
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAATCACACAAATGCCTTCGGATCTTAACCCGAA
TATAGTAACTTAGCA
Done.