Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 419 of 770
Found at i:129004158 original size:29 final size:29
Alignment explanation
Indices: 129004097--129004195 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
129004087 GCTGATTTTG
129004097 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
129004125 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
129004154 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
129004182 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
129004196 GACTTACTGT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:129005998 original size:28 final size:28
Alignment explanation
Indices: 129005929--129006029 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
129005919 GACAAGATTG
* * * *
129005929 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
129005959 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
129005987 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
129006016 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
129006030 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:129013911 original size:28 final size:28
Alignment explanation
Indices: 129013842--129013942 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
129013832 GACAAGATTG
* * * *
129013842 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
129013872 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
129013900 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
129013929 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
129013943 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:129020042 original size:49 final size:48
Alignment explanation
Indices: 129019897--129020156 Score: 391
Period size: 49 Copynumber: 5.4 Consensus size: 48
129019887 TACATATATG
* * * *
129019897 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA-TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
* *
129019944 TGTGATAAGG-CTGTATGGCCAATGTGATGAATGTGAAAGTGTA-TATA
1 TGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATTATA
129019991 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129020040 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129020089 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
129020138 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
129020157 TAATGTAAAA
Statistics
Matches: 201, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 79 0.39
48 2 0.01
49 119 0.59
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
Found at i:129020308 original size:37 final size:37
Alignment explanation
Indices: 129020258--129020342 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
129020248 GGAAAATGTT
*
129020258 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
129020295 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
129020332 CCGGGTAAGAC
1 CCGGGTAAGAC
129020343 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:129023099 original size:40 final size:40
Alignment explanation
Indices: 129023053--129023260 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
129023043 TGAATAATAC
* * *
129023053 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
129023093 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
129023133 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * * ** *
129023173 CTGGGCTAAGACTCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
129023213 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
129023253 CC-GGCTAA
1 CCGGGCTAA
129023261 ATTCCGAAGA
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.04
40 133 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:129035586 original size:45 final size:46
Alignment explanation
Indices: 129035510--129035637 Score: 213
Period size: 45 Copynumber: 2.8 Consensus size: 46
129035500 TATTTGGGCA
*
129035510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
129035556 TCCGAACTCGTTG-GTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
129035601 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
129035638 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 41 0.53
46 36 0.47
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:129042510 original size:49 final size:48
Alignment explanation
Indices: 129042365--129042624 Score: 400
Period size: 49 Copynumber: 5.4 Consensus size: 48
129042355 TACATATATG
* * * *
129042365 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA-TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
*
129042412 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA-TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
129042459 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129042508 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129042557 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
129042606 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
129042625 TAATGTAAAA
Statistics
Matches: 203, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 83 0.41
49 119 0.59
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
Found at i:129042775 original size:37 final size:37
Alignment explanation
Indices: 129042725--129042809 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
129042715 TGGAAATGTT
*
129042725 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
129042762 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
129042799 CCGGGTAAGAC
1 CCGGGTAAGAC
129042810 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:129044930 original size:29 final size:29
Alignment explanation
Indices: 129044898--129045000 Score: 197
Period size: 29 Copynumber: 3.6 Consensus size: 29
129044888 CGTTAACCGA
129044898 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
129044927 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
129044956 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATTGAG
*
129044985 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
129045001 TTTTTCAACA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATTGAG
Found at i:129044937 original size:58 final size:58
Alignment explanation
Indices: 129044866--129044999 Score: 191
Period size: 58 Copynumber: 2.3 Consensus size: 58
129044856 CGAATGATTA
*
129044866 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATT
* * **
129044924 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATT
129044982 GAGGCACTGTGTGTGCGA
1 GAGGCACTGTGTGTGCGA
129045000 GTTTTTCAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 5 0.07
58 61 0.90
59 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATT
Found at i:129048693 original size:49 final size:48
Alignment explanation
Indices: 129048548--129048807 Score: 400
Period size: 49 Copynumber: 5.4 Consensus size: 48
129048538 TACATATATG
* * * *
129048548 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA-TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
*
129048595 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA-TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
129048642 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129048691 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
129048740 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
129048789 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
129048808 TAATGTAAAA
Statistics
Matches: 203, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 83 0.41
49 119 0.59
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
Found at i:129048958 original size:37 final size:37
Alignment explanation
Indices: 129048908--129048992 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
129048898 TGGAAATGTT
*
129048908 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
129048945 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
129048982 CCGGGTAAGAC
1 CCGGGTAAGAC
129048993 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:129051905 original size:40 final size:39
Alignment explanation
Indices: 129051703--129051910 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 39
129051693 TGAATAATAC
* * *
129051703 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
* *
129051743 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
* *
129051783 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * * * *
129051823 CTGGGCTAAGACTCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGT--TATAT
* * *
129051863 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTAGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
129051903 CC-GGCTAA
1 CCGGGCTAA
129051911 ATTTCGAAGA
Statistics
Matches: 143, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 133 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:129059509 original size:28 final size:29
Alignment explanation
Indices: 129059469--129059567 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
129059459 GTAATAAGCC
*
129059469 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
129059497 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
129059525 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
129059554 CGCACACTTAGTGC
1 CGCACACTTAGTGC
129059568 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:129067165 original size:28 final size:29
Alignment explanation
Indices: 129067125--129067223 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
129067115 GTAATAAGCC
*
129067125 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
129067153 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
129067181 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
129067210 CGCACACTTAGTGC
1 CGCACACTTAGTGC
129067224 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:129071540 original size:6 final size:6
Alignment explanation
Indices: 129071531--129071606 Score: 61
Period size: 6 Copynumber: 13.0 Consensus size: 6
129071521 GATATGTCTT
** * * *
129071531 TAAAAA T-AAAA TAATAAAA TTGAAA TGAAAA T-AAAA TCAAAA GAAAAA
1 TAAAAA TAAAAA T-A-AAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
129071579 TAAAAA T--AAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
129071607 AATAAATAGG
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
4 4 0.07
5 10 0.18
6 38 0.67
8 5 0.09
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:129071565 original size:17 final size:15
Alignment explanation
Indices: 129071543--129071612 Score: 54
Period size: 16 Copynumber: 4.4 Consensus size: 15
129071533 AAAATAAAAT
129071543 AATAAAATTGAAATGAA
1 AATAAAA-T-AAATGAA
*
129071560 AATAAAATCAAAAGAAA
1 AATAAAAT-AAATG-AA
*
129071577 AATAAAAATAAATAAA
1 AAT-AAAATAAATGAA
129071593 AATAAAAATAAA--AA
1 AAT-AAAATAAATGAA
129071607 AATAAA
1 AATAAA
129071613 TAGGAGGAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
13 3 0.06
14 5 0.11
16 19 0.40
17 15 0.32
18 5 0.11
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (15 bp):
AATAAAATAAATGAA
Found at i:129071589 original size:22 final size:23
Alignment explanation
Indices: 129071531--129071606 Score: 75
Period size: 22 Copynumber: 3.3 Consensus size: 23
129071521 GATATGTCTT
*
129071531 TAAAAATAAAATAATAAA-ATTGAAA
1 TAAAAATAAAATAA-AAAGA--AAAA
* *
129071556 TGAAAATAAAATCAAAAGAAAAA
1 TAAAAATAAAATAAAAAGAAAAA
*
129071579 TAAAAAT-AAATAAAAATAAAAA
1 TAAAAATAAAATAAAAAGAAAAA
129071601 TAAAAA
1 TAAAAA
129071607 AATAAATAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
22 19 0.43
23 9 0.20
24 3 0.07
25 13 0.30
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (23 bp):
TAAAAATAAAATAAAAAGAAAAA
Found at i:129071613 original size:12 final size:12
Alignment explanation
Indices: 129071580--129071614 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
129071570 AAAGAAAAAT
129071580 AAAAATAAATAA
1 AAAAATAAATAA
129071592 AAATAA-AAATAA
1 AAA-AATAAATAA
129071604 AAAAATAAATA
1 AAAAATAAATA
129071615 GGAGGAGTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAATAAATAA
Found at i:129076679 original size:13 final size:13
Alignment explanation
Indices: 129076657--129076689 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
129076647 AAGGGTTTGT
129076657 TTAT-TAAACTAA
1 TTATCTAAACTAA
129076669 TTATCTAAACTAA
1 TTATCTAAACTAA
*
129076682 TTAACTAA
1 TTATCTAA
129076690 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:129079986 original size:66 final size:68
Alignment explanation
Indices: 129079908--129080094 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
129079898 TAGTACCACT
*
129079908 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
129079970 CACG
65 CACG
129079974 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
129080039 ATCACG
63 ATCACG
129080045 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
129080095 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:129080019 original size:71 final size:71
Alignment explanation
Indices: 129079931--129080094 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
129079921 CGATTTGTCT
129079931 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
129079996 CTTTCA
66 CTTTCA
129080002 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
129080067 CTTTCA
66 CTTTCA
129080073 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
129080095 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:129080132 original size:71 final size:70
Alignment explanation
Indices: 129079931--129080128 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
129079921 CGATTTGTCT
* * * *
129079931 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
129079996 CTTTCA
65 CTTTCA
* * * *
129080002 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
129080067 CTTTCA
65 CTTTCA
* *
129080073 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
129080129 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:129087550 original size:71 final size:71
Alignment explanation
Indices: 129087466--129087629 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
129087456 CGATTTGTCT
129087466 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
129087531 CTTTCA
66 CTTTCA
* *
129087537 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
129087602 CTTTCA
66 CTTTCA
129087608 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
129087630 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:129087667 original size:71 final size:70
Alignment explanation
Indices: 129087466--129087663 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
129087456 CGATTTGTCT
* * * * *
129087466 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
129087531 CTTTCA
65 CTTTCA
* * * *
129087537 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
129087602 CTTTCA
65 CTTTCA
* *
129087608 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
129087664 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:129097362 original size:40 final size:40
Alignment explanation
Indices: 129097297--129097504 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
129097287 TCTTCGGAAT
* ** *
129097297 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
129097336 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
129097376 TTAGCCCGGATATAACAACTCGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
129097416 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
129097456 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGAGG-C
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCG-GGTC
129097496 TTAGCCCGG
1 TTAGCCCGG
129097505 GTATCATTCA
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 145 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:129102799 original size:25 final size:25
Alignment explanation
Indices: 129102756--129102819 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
129102746 TATCAGAACT
* * * * *
129102756 AGAATAAAAATGAGAATCAGGTGAC
1 AGAATCAAAATCAGTATCAAGTAAC
*
129102781 AGAATCAGAATCAGTATCAAGTAAC
1 AGAATCAAAATCAGTATCAAGTAAC
129102806 AGAATCAAAATCAG
1 AGAATCAAAATCAG
129102820 AATGTGAATG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (25 bp):
AGAATCAAAATCAGTATCAAGTAAC
Found at i:129103010 original size:27 final size:27
Alignment explanation
Indices: 129102940--129103020 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
129102930 AACATGGCTG
* * *
129102940 CCAGAA-CAGATATTATGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
129102966 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATTGTGGCAGAGCCA
* *
129102993 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
129103020 C
1 C
129103021 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 40 0.85
28 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:129103092 original size:20 final size:20
Alignment explanation
Indices: 129103064--129103104 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
129103054 CGGGTCTATA
*
129103064 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
129103084 ATCGATACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
129103104 A
1 A
129103105 ACGGTACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.29, G:0.17, T:0.15
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:129103140 original size:22 final size:21
Alignment explanation
Indices: 129103114--129103167 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
129103104 AACGGTACAC
129103114 AACCATAATCAGGTTGGCACAA
1 AACCATAATCAGG-TGGCACAA
**
129103136 AACCATATAT-AGGTGGCGTAA
1 AACCATA-ATCAGGTGGCACAA
*
129103157 AGCCATAATCA
1 AACCATAATCA
129103168 AAATAATTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 2 0.07
21 13 0.48
22 10 0.37
23 2 0.07
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (21 bp):
AACCATAATCAGGTGGCACAA
Found at i:129103714 original size:27 final size:27
Alignment explanation
Indices: 129103684--129103823 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 27
129103674 GGAAAAATGG
* * * *
129103684 TAATTTTACCCCATAGGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
129103711 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
129103738 TATTTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
129103765 TAATTCTACCCTACAGGGGTATTT-TA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
129103791 GTAATTCTACCCTGCAGGGGTATTTCAA
1 -TAATTCTACCCTACAGGGGTATTTCGA
129103819 TAATT
1 TAATT
129103824 TTGTAAATCG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:129104890 original size:48 final size:48
Alignment explanation
Indices: 129104788--129105210 Score: 369
Period size: 48 Copynumber: 8.8 Consensus size: 48
129104778 CACGGTGTGA
* * * *
129104788 GAGCTAATGTAAAACCATGTTTGGAACATGGCATC-G--TTGATGTTGT
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAT-ATGT
*
129104834 GAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCAGCATTGATATGT
1 --GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGT
* * *
129104884 GCGCTAGTGTAAGACCATGTCT-AAGACATGGCATTGGCATTGATATGT
1 GAGCTAGTGTAAGACCATGTCTGGA-ACATGGCATCGGCATTGATATGT
* * * * * *
129104932 GCGCTAGTATAAGACCATGTCTGGGACATGGCATCGTCCACCT--TATGA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCG-GCA-TTGATATGT
* * * * * *
129104980 GAGCCAGTGTAAAACCATGTCTAGAACATGGCATTGTCATTAATATGT
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGT
* * * *
129105028 GCGCTAGTGTAAGACCATGTCTAGG-ACATAGCATCGGCCACCT--TATGA
1 GAGCTAGTGTAAGACCATGTCT-GGAACATGGCATCGG-CA-TTGATATGT
* * * * * *
129105076 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTAATGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGT
* * * * *
129105124 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGT
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGT
* *
129105172 GAGCTAGTGTAAGGCCATGTTTGGAACATGGCATCGGCA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
129105211 ATCCACCCTC
Statistics
Matches: 307, Mismatches: 53, Indels: 30
0.79 0.14 0.08
Matches are distributed among these distances:
46 2 0.01
47 6 0.02
48 283 0.92
49 6 0.02
50 5 0.02
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGATATGT
Found at i:129105206 original size:144 final size:144
Alignment explanation
Indices: 129104785--129105209 Score: 450
Period size: 144 Copynumber: 3.0 Consensus size: 144
129104775 GACCACGGTG
* * * * * *
129104785 TGAGAGCTAATGTAAAACCATGTTTGGAACATGGCATCGTTGATGTTG-TGAGAGCTAGTGTAAG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAATG-TGATGAGAGCTAGTGTAAG
* *
129104849 ACCATGTCTGGAACATGGCATCAGCATTGATATGTGCGCTAGTGTAAGACCATGTCT-AAGACAT
65 ACCATGTCTGGAACATGGCATCAGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGGA-ACAT
* *
129104913 GGCATTGG-CATTGATA
129 GGCATCGGCCACT-ATA
* * * * ** * * *
129104929 TGTGCGCTAGTATAAGACCATGTCTGGGACATGGCATC-GTCCACCTTATGAGAGCCAGTGTAAA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGT-AATGTGATGAGAGCTAGTGTAAG
* * * *
129104993 ACCATGTCTAGAACATGGCAT-TGTCATTAATATGTGCGCTAGTGTAAGACCATGTCTAGG-ACA
65 ACCATGTCTGGAACATGGCATCAG-CATTGATATGTGCGCTAGTGTAAGACCATGT-TTGGAACA
*
129105056 TAGCATCGGCCACCT-TA
128 TGGCATCGGCCA-CTATA
* *
129105073 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTAATGAGATGAGAGCTAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAATGTGATGAGAGCTAGTGTAAGA
* * * * * *
129105138 CCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCTAGTGTAAGGCCATGTTTGGAACATGG
66 CCATGTCTGGAACATGGCATCAGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGGAACATGG
129105203 CATCGGC
131 CATCGGC
129105210 AATCCACCCT
Statistics
Matches: 226, Mismatches: 45, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
143 6 0.03
144 214 0.95
145 5 0.02
146 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (144 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAATGTGATGAGAGCTAGTGTAAGA
CCATGTCTGGAACATGGCATCAGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGGAACATGG
CATCGGCCACTATA
Found at i:129109752 original size:24 final size:23
Alignment explanation
Indices: 129109725--129109785 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
129109715 TAATAAACAA
129109725 TAAGCTCTATTGAGCTGAAAACGG
1 TAAGCTCTATTGAGCT-AAAACGG
* * * *
129109749 TAAGTTGTATTCAGCTAAAATGG
1 TAAGCTCTATTGAGCTAAAACGG
*
129109772 TAAGCTTTATTGAG
1 TAAGCTCTATTGAG
129109786 TCGAACAGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTAAAACGG
Found at i:129111886 original size:27 final size:27
Alignment explanation
Indices: 129111851--129111934 Score: 168
Period size: 27 Copynumber: 3.1 Consensus size: 27
129111841 GAGCATGTAA
129111851 ATATGTTAAATTGAATGTTGTGTTTGT
1 ATATGTTAAATTGAATGTTGTGTTTGT
129111878 ATATGTTAAATTGAATGTTGTGTTTGT
1 ATATGTTAAATTGAATGTTGTGTTTGT
129111905 ATATGTTAAATTGAATGTTGTGTTTGT
1 ATATGTTAAATTGAATGTTGTGTTTGT
129111932 ATA
1 ATA
129111935 GAATGTGATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.51
Consensus pattern (27 bp):
ATATGTTAAATTGAATGTTGTGTTTGT
Found at i:129113869 original size:40 final size:40
Alignment explanation
Indices: 129113832--129114077 Score: 361
Period size: 40 Copynumber: 6.2 Consensus size: 40
129113822 GGACTAAGAT
* *
129113832 CCGAAGGCATGTGTGCTAGTTACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
129113872 CCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
129113912 CCGAAGGCATTTGTGCTAGTTGCTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
*
129113952 CTGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
129113992 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
129114032 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
129114071 CCAAAGG
1 CCGAAGG
129114078 TACTTGGGTT
Statistics
Matches: 186, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 171 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:129114034 original size:120 final size:120
Alignment explanation
Indices: 129113816--129114071 Score: 426
Period size: 120 Copynumber: 2.1 Consensus size: 120
129113806 TATTCGGATG
* *
129113816 ATAATCGGACTAAGATCCGAAGGCATGTGTGCTAGTTACTATATTCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATGTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
129113881 TTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
66 TTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
129113936 ATAACCGGACTAAGATCTGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATGTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
129114001 TTTGTGCTAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
*
129114056 ATATCCGG-CTAA-ATCC
1 ATAACCGGACTAAGATCC
129114072 CAAAGGTACT
Statistics
Matches: 127, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
118 3 0.02
119 4 0.03
120 120 0.94
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (120 bp):
ATAACCGGACTAAGATCCGAAGGCATGTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:129131557 original size:28 final size:28
Alignment explanation
Indices: 129131488--129131588 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
129131478 GACAAGATTG
* * * *
129131488 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
129131518 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
129131546 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
129131575 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
129131589 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:129139508 original size:28 final size:28
Alignment explanation
Indices: 129139439--129139539 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
129139429 GACAAGATTG
* * * *
129139439 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
129139469 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
129139497 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
129139526 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
129139540 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:129142222 original size:39 final size:39
Alignment explanation
Indices: 129142168--129142311 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
129142158 GAATGTTCGA
129142168 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
129142207 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
129142246 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
129142285 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
129142312 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:129142258 original size:78 final size:79
Alignment explanation
Indices: 129142169--129142351 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
129142159 AATGTTCGAG
129142169 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
129142233 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
129142247 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
129142312 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
129142326 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
129142352 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:129150186 original size:39 final size:39
Alignment explanation
Indices: 129150132--129150275 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
129150122 GAATGTTCGA
129150132 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
129150171 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
129150210 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
129150249 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
129150276 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:129150222 original size:78 final size:79
Alignment explanation
Indices: 129150133--129150315 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
129150123 AATGTTCGAG
129150133 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
129150197 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
129150211 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
129150276 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
129150290 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
129150316 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:129152662 original size:86 final size:86
Alignment explanation
Indices: 129151714--129152650 Score: 1653
Period size: 86 Copynumber: 10.9 Consensus size: 86
129151704 GGGGTGTTAC
*
129151714 ATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAGACGAAGAACCTTAAA-CCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
129151778 GGGTAACAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
*
129151799 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
*
129151864 GGGTAATAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
*
129151885 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
* *
129151950 GGGTAACAGGTTGAAATACAG
66 GGGTAACAGGTTGAATTGCAG
* *
129151971 ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGTAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
*
129152036 CGGTAACAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
* *
129152057 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGAAGAATCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
* *
129152122 GGATAACAGGTTGAATTTCAG
66 GGGTAACAGGTTGAATTGCAG
*
129152143 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
* * *
129152208 GGGTAACAGGCTAAATTCCAG
66 GGGTAACAGGTTGAATTGCAG
129152229 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
*
129152294 GGGTAACAGGTTGAATTTCAG
66 GGGTAACAGGTTGAATTGCAG
*
129152315 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
129152380 GGGTAACAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
*
129152401 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
129152466 GGGTAACAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
129152487 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
**
129152552 GAATAACAGGTTGAATTGCAG
66 GGGTAACAGGTTGAATTGCAG
*
129152573 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACCGAAGACGAAGAACCTTAAA-CCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
129152637 GGGTAACAGGTTGA
66 GGGTAACAGGTTGA
129152651 GTTTACAGAT
Statistics
Matches: 813, Mismatches: 38, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
85 74 0.09
86 739 0.91
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (86 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCCTAAGCAGTA
GGGTAACAGGTTGAATTGCAG
Found at i:129155349 original size:2 final size:2
Alignment explanation
Indices: 129155290--129155332 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
129155280 GTGCTATTAT
* * *
129155290 TA TA TA TA CA TA TA TA TA CA TA TA TA TC TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129155332 T
1 T
129155333 TTTTTTCCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:129156957 original size:14 final size:13
Alignment explanation
Indices: 129156934--129156963 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
129156924 AACAGAAGGC
129156934 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
129156947 AAAAGACAAGAAAG
1 AAAAGA-AAGAAAG
129156961 AAA
1 AAA
129156964 CATAACGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAAG
Found at i:129157405 original size:25 final size:25
Alignment explanation
Indices: 129157354--129157410 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
129157344 TTTTTAAAGC
*
129157354 TTTTTTAATGTTTATAATTAATAAA
1 TTTTTTAATGTTTATAATCAATAAA
* * *
129157379 TTTTTTAAGTTTTTCTAATCAATAAT
1 TTTTTTAA-TGTTTATAATCAATAAA
129157405 TTTTTT
1 TTTTTT
129157411 TGCTTATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTTTTAATGTTTATAATCAATAAA
Found at i:129182323 original size:29 final size:29
Alignment explanation
Indices: 129182290--129182348 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
129182280 ATGGTTTAAC
* * *
129182290 GTGCAATTGTGTACATGAACTTTTGTTTT
1 GTGCAATTGTATACATGAAATTTTGATTT
*
129182319 GTGCAATTTTATACATGAAATTTTGATTT
1 GTGCAATTGTATACATGAAATTTTGATTT
129182348 G
1 G
129182349 ATTCAATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.47
Consensus pattern (29 bp):
GTGCAATTGTATACATGAAATTTTGATTT
Found at i:129186240 original size:20 final size:20
Alignment explanation
Indices: 129186211--129186251 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
129186201 TTACATTCTC
* * *
129186211 TTCTCTTTCTCTATTTGTTT
1 TTCTCCTTCTCCATTTCTTT
129186231 TTCTCCTTCTCCATTTCTTT
1 TTCTCCTTCTCCATTTCTTT
129186251 T
1 T
129186252 GACGTAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.27, G:0.02, T:0.66
Consensus pattern (20 bp):
TTCTCCTTCTCCATTTCTTT
Found at i:129186381 original size:29 final size:28
Alignment explanation
Indices: 129186337--129186391 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
129186327 CTTTTTATTT
* *
129186337 CTTTATTTATTTTTCTTTTCTTCTTCCC
1 CTTTATTTATTTTTCTTATATTCTTCCC
129186365 CTTTATTT-TTCTCTTCTTATATTCTTC
1 CTTTATTTATT-T-TTCTTATATTCTTC
129186392 ACAGCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 9 0.39
29 12 0.52
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (28 bp):
CTTTATTTATTTTTCTTATATTCTTCCC
Found at i:129187186 original size:2 final size:2
Alignment explanation
Indices: 129187179--129187212 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
129187169 AAAAGCAATA
129187179 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129187213 TAATTTTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:129189450 original size:31 final size:33
Alignment explanation
Indices: 129189412--129189486 Score: 95
Period size: 31 Copynumber: 2.4 Consensus size: 33
129189402 TTCATAAAAA
129189412 TGGGCCCACATGCCC-G-TGTGG-TTTGCTCATG
1 TGGGCCCACATGCCCAGAT-TGGCTTTGCTCATG
* *
129189443 TGGGCCCATACGCCCAGATTGGCTTTGCTCATG
1 TGGGCCCACATGCCCAGATTGGCTTTGCTCATG
129189476 T-GGCCCACATG
1 TGGGCCCACATG
129189487 ATCTGGCCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
31 13 0.35
32 12 0.32
33 12 0.32
ACGTcount: A:0.13, C:0.31, G:0.29, T:0.27
Consensus pattern (33 bp):
TGGGCCCACATGCCCAGATTGGCTTTGCTCATG
Found at i:129194703 original size:14 final size:14
Alignment explanation
Indices: 129194686--129194718 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
129194676 AACCTAACCC
129194686 AAAAAAA-AACAAAG
1 AAAAAAAGAA-AAAG
129194700 AAAAAAAGAAAAAG
1 AAAAAAAGAAAAAG
129194714 AAAAA
1 AAAAA
129194719 CTTACCCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:129194743 original size:18 final size:19
Alignment explanation
Indices: 129194708--129194755 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
129194698 AGAAAAAAAG
*
129194708 AAAAAGAAAAACTTA-CCCC
1 AAAAA-AAAAACTAACCCCC
*
129194727 AAAAAAAAACCTAACCCCCC
1 AAAAAAAAAACTAA-CCCCC
129194747 AAAAAAAAA
1 AAAAAAAAA
129194756 GAAGAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 5 0.20
20 13 0.52
ACGTcount: A:0.65, C:0.27, G:0.02, T:0.06
Consensus pattern (19 bp):
AAAAAAAAAACTAACCCCC
Found at i:129211870 original size:29 final size:29
Alignment explanation
Indices: 129211837--129211968 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
129211827 GTGACGAGAT
*
129211837 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
129211866 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
129211895 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
129211924 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
129211953 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
129211969 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:129214876 original size:51 final size:51
Alignment explanation
Indices: 129214711--129214887 Score: 241
Period size: 51 Copynumber: 3.5 Consensus size: 51
129214701 ACTAGTAACT
* * *
129214711 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGCTTAGTC-A
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
* * **
129214760 CAAGTGTGGTACTTTGTGAAGGCCACTTTTTGAAGAAAGATAGCTTTGGTTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGACTA
*
129214812 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
* *
129214863 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
129214888 TCTGGTATCC
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 32 0.29
51 46 0.41
52 34 0.30
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
Found at i:129215487 original size:28 final size:28
Alignment explanation
Indices: 129215445--129215514 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
129215435 AATTATTTTG
*
129215445 TAGTG-AAGAGGGGTCGAAACAATTAAA
1 TAGTGAAATAGGGGTCGAAACAATTAAA
*
129215472 TAGTGAAATAGGGGTCGAAACAGTTAAA
1 TAGTGAAATAGGGGTCGAAACAATTAAA
129215500 TAGTGAAATAGGGGT
1 TAGTGAAATAGGGGT
129215515 GACTTTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 5 0.12
28 35 0.88
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.21
Consensus pattern (28 bp):
TAGTGAAATAGGGGTCGAAACAATTAAA
Found at i:129224049 original size:15 final size:15
Alignment explanation
Indices: 129223997--129224050 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
129223987 TAAAGATAAT
*
129223997 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
129224011 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
129224026 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
129224041 AAGAAACCCA
1 AAGAAACCCA
129224051 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:129226942 original size:14 final size:14
Alignment explanation
Indices: 129226923--129226953 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
129226913 ATATCACAAC
129226923 TCGCACAATTGCCT
1 TCGCACAATTGCCT
129226937 TCGCACAATTGCCT
1 TCGCACAATTGCCT
129226951 TCG
1 TCG
129226954 GGCTTAGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.35, G:0.16, T:0.29
Consensus pattern (14 bp):
TCGCACAATTGCCT
Found at i:129226980 original size:53 final size:54
Alignment explanation
Indices: 129226884--129226992 Score: 175
Period size: 53 Copynumber: 2.0 Consensus size: 54
129226874 TATGGTAACC
129226884 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTT
1 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTT
** * *
129226938 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTT
1 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTT
129226991 CG
1 CG
129226993 GGCTTAGCCC
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 35 0.69
54 16 0.31
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (54 bp):
CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTT
Found at i:129226990 original size:39 final size:39
Alignment explanation
Indices: 129226936--129227021 Score: 172
Period size: 39 Copynumber: 2.2 Consensus size: 39
129226926 CACAATTGCC
129226936 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
129226975 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
129227014 TTCGCACA
1 TTCGCACA
129227022 TTCATTCACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (39 bp):
TTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:129234919 original size:39 final size:39
Alignment explanation
Indices: 129234838--129234961 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
129234828 TATGGTAACC
** *
129234838 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
129234878 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
129234917 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
129234956 CGCACA
1 CGCACA
129234962 TTCATTCACA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 60 0.79
40 16 0.21
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:129238403 original size:50 final size:49
Alignment explanation
Indices: 129238290--129238465 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
129238280 CTGGTACGCA
* * * * **
129238290 TAGTAGCCTGCACTTACTACTACACATGCGACCAATAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
129238339 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
129238389 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
129238440 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
129238466 TGCGACCTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 28 0.26
50 41 0.38
51 35 0.33
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:129238459 original size:101 final size:99
Alignment explanation
Indices: 129238290--129238476 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 99
129238280 CTGGTACGCA
* * *
129238290 TAGTAGCCTGCACTTACTACTACACATGCGACCAATAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTACTACTACACACGCGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
*
129238355 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * ** *
129238389 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTACTACTACACACGCGA-C-CAATAGTCGGGTACACATAGTAGCCTGCACT
*
129238454 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
129238477 AATAGATCAT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 28 0.37
100 1 0.01
101 46 0.61
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTACTACTACACACGCGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:129249219 original size:28 final size:28
Alignment explanation
Indices: 129249153--129249254 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 28
129249143 ATATAGTGAA
*
129249153 TCGCACACTTAGTGCTATATGTATTC-AAC
1 TCGCACACTTAGTGCTATA--TAATCAAAC
129249182 TCGCACACTTAGTGCTATATAATCAAAC
1 TCGCACACTTAGTGCTATATAATCAAAC
* * *
129249210 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 TCGCACACTTAGTGCTATATAA--TCAAAC
*
129249240 CCGCACACTTAGTGC
1 TCGCACACTTAGTGC
129249255 CATACCCTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.35
29 19 0.29
30 19 0.29
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATATAATCAAAC
Found at i:129249298 original size:29 final size:29
Alignment explanation
Indices: 129249279--129249372 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
129249269 TCGCACACCC
* *
129249279 AGTGCCGTATATTTCCAGCTTGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
129249308 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
129249337 AGTGCCATATATTTTCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
129249366 AGTGCCA
1 AGTGCCA
129249373 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.32
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:129249304 original size:58 final size:58
Alignment explanation
Indices: 129249242--129249372 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
129249232 TTTTAAACCC
* * * *
129249242 GCACACTTAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCTT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * ** *
129249300 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
129249358 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
129249373 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:129257113 original size:28 final size:28
Alignment explanation
Indices: 129257048--129257148 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
129257038 ATAGTGAATC
*
129257048 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
129257077 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
129257105 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
129257135 CGCACACTTAGTGC
1 CGCACACTTAGTGC
129257149 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:129257192 original size:29 final size:29
Alignment explanation
Indices: 129257173--129257265 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
129257163 TCGCACACCC
*
129257173 AGTGCCGTATATTTCCAGC-TGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
129257201 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
129257230 AGTGCCATATATTTTCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
129257259 AGTGCCA
1 AGTGCCA
129257266 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 18 0.29
29 44 0.71
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:129257206 original size:57 final size:58
Alignment explanation
Indices: 129257136--129257265 Score: 165
Period size: 57 Copynumber: 2.3 Consensus size: 58
129257126 TTTTAAACCC
* * *
129257136 GCACACTTAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGC-T
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * ** *
129257193 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
129257251 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
129257266 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 46 0.73
58 17 0.27
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:129259553 original size:27 final size:28
Alignment explanation
Indices: 129259523--129259592 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
129259513 ATAATAAGTC
*
129259523 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
129259550 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
129259578 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
129259593 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:129270089 original size:28 final size:28
Alignment explanation
Indices: 129270057--129270155 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
129270047 GCAATAAGCC
*
129270057 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
129270085 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
129270113 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
129270142 CGCACACTTAGTGC
1 CGCACACTTAGTGC
129270156 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:129277769 original size:28 final size:28
Alignment explanation
Indices: 129277737--129277835 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
129277727 GCAATAAGCC
*
129277737 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
129277765 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
129277793 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
129277822 CGCACACTTAGTGC
1 CGCACACTTAGTGC
129277836 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:129279356 original size:28 final size:28
Alignment explanation
Indices: 129279303--129279358 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
129279293 TACAGGGGTT
*
129279303 TTCACACGGCCTGACACATGCCCGTGTCC
1 TTCACACAGCCTGACACA-GCCCGTGTCC
129279332 TTCACACAGCCATGACAC-GCCCGTGTC
1 TTCACACAGCC-TGACACAGCCCGTGTC
129279359 TTAGCCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 9 0.36
29 10 0.40
30 6 0.24
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (28 bp):
TTCACACAGCCTGACACAGCCCGTGTCC
Found at i:129281683 original size:16 final size:16
Alignment explanation
Indices: 129281664--129281694 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
129281654 CTTCTTCACT
129281664 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
129281680 TACTTACTTACTTAA
1 TACTCACTTACTTAA
129281695 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:129281700 original size:20 final size:20
Alignment explanation
Indices: 129281661--129281700 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
129281651 AAACTTCTTC
* *
129281661 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
129281681 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
129281701 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:129282077 original size:108 final size:110
Alignment explanation
Indices: 129281933--129282133 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
129281923 ATCCTTTTGA
* * **
129281933 AACTTACCATTGCCATGTCTTCACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTCACATGGTCTTACATGATATCCTTGCCTTACAAACCTCACCAAT
129281996 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
129282041 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTACAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTCACATGGTCTTACATGATATCCTTGCCTTACAAACCTCACCAAT
*
129282106 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
129282134 TTTCCTTAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 48 0.59
109 7 0.09
110 27 0.33
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTCACATGGTCTTACATGATATCCTTGCCTTACAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:129282138 original size:55 final size:54
Alignment explanation
Indices: 129281886--129282140 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 54
129281876 ACACGGGTAC
* * * *
129281886 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * *
129281935 CTTACC-ATTGCCATGTCTTCACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * *
129281988 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA--AA
* * * * *
129282043 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTACAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * *
129282096 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTTTCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
129282141 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 44 0.26
54 8 0.05
55 73 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
Found at i:129300846 original size:44 final size:47
Alignment explanation
Indices: 129300684--129300850 Score: 141
Period size: 46 Copynumber: 3.6 Consensus size: 47
129300674 CAGATAAGGC
* * * * *
129300684 CTAGTGTAAGACATGTCTGGGACATGCTTCAGCCAT-ATTA-TGA-GTG
1 CTAGTGTAAAACATGTCTGGGACATGCATCGGCC-TCA-CAGAGATGTG
* * *
129300730 CTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT-AG
1 CTAGTGTAAAACATGTCTGGGACATGCATCGGCCTC-ACAGAGATGTG
* * * * *
129300777 CCAGTGTAAAACGTGTTTGGCACATGCATCGG-CT-A-AGAGTTGTG
1 CTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCACAGAGATGTG
129300821 CTAGTGTAAAACATGTCTGGGACATGCATC
1 CTAGTGTAAAACATGTCTGGGACATGCATC
129300851 AGCACGCATA
Statistics
Matches: 98, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
43 5 0.05
44 28 0.29
45 1 0.01
46 34 0.35
47 30 0.31
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (47 bp):
CTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCACAGAGATGTG
Found at i:129303747 original size:27 final size:27
Alignment explanation
Indices: 129303709--129303862 Score: 166
Period size: 27 Copynumber: 5.5 Consensus size: 27
129303699 ATAGTGAATC
129303709 CGCACACTTAGTGCTATGA-AATCAGCT
1 CGCACACTTAGTGCTAT-ATAATCAGCT
* **
129303736 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AGCT
*
129303764 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATATAATCAGCT
* *
129303791 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATATAA--TCAGCT
* *
129303820 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATATA-AT-CAGCT
*
129303849 TGCACACTTAGTGC
1 CGCACACTTAGTGC
129303863 CATTCTCGTC
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 41 0.39
28 24 0.23
29 40 0.38
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAGCT
Found at i:129303780 original size:55 final size:55
Alignment explanation
Indices: 129303709--129303812 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
129303699 ATAGTGAATC
*
129303709 CGCACACTTAGTGCTATGAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
129303764 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
129303813 TTGAGCTCGC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:129303811 original size:29 final size:28
Alignment explanation
Indices: 129303709--129303862 Score: 136
Period size: 29 Copynumber: 5.5 Consensus size: 28
129303699 ATAGTGAATC
*
129303709 CGCACACTTAGTGC-TATGAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
129303736 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
129303764 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
129303791 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
129303820 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
129303849 TGCACACTTAGTGC
1 CGCACACTTAGTGC
129303863 CATTCTCGTC
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
27 35 0.33
28 28 0.26
29 42 0.40
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:129311614 original size:28 final size:28
Alignment explanation
Indices: 129311568--129311720 Score: 161
Period size: 29 Copynumber: 5.5 Consensus size: 28
129311558 ATAGTGAATC
129311568 CGCACACTTAGTGC--TATAAATCAGCT
1 CGCACACTTAGTGCTATATAAATCAGCT
* **
129311594 CGCACACATAGTGCTATAT-AATCAAATT
1 CGCACACTTAGTGCTATATAAATC-AGCT
129311622 CGCACACTTAGTGCTATA-AAATCAGCT
1 CGCACACTTAGTGCTATATAAATCAGCT
* * *
129311649 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATATAA-ATCAGCT
* **
129311678 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATATAAAT-CAGCT
*
129311707 TGCACACTTAGTGC
1 CGCACACTTAGTGC
129311721 CATTCTCGTC
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
26 13 0.12
27 23 0.22
28 30 0.28
29 40 0.38
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAAATCAGCT
Found at i:129312366 original size:2 final size:2
Alignment explanation
Indices: 129312354--129312385 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
129312344 TGATGGTCGA
*
129312354 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129312386 CAACTATGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:129313845 original size:42 final size:40
Alignment explanation
Indices: 129313773--129313902 Score: 170
Period size: 42 Copynumber: 3.2 Consensus size: 40
129313763 GATATCTTGT
129313773 ACACTAAGTGTCATACATAGCCGAAGCTATCTCAAATCGC
1 ACACTAAGTGTCATACATAGCCGAAGCTATCTCAAATCGC
* * *
129313813 ACACTAAGTGTCATATATATAGCCGAAGCTATCTCAATCTCCC
1 ACACTAAGTGTC--ATACATAGCCGAAGCTATCTCAA-ATCGC
* * *
129313856 ACACTAAGTGCCATACGTAGCCGAAGCTATGTCAAATCGC
1 ACACTAAGTGTCATACATAGCCGAAGCTATCTCAAATCGC
*
129313896 ATACTAA
1 ACACTAA
129313903 ATGCCACATA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 21 0.27
41 20 0.26
42 22 0.29
43 14 0.18
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.24
Consensus pattern (40 bp):
ACACTAAGTGTCATACATAGCCGAAGCTATCTCAAATCGC
Found at i:129318955 original size:26 final size:26
Alignment explanation
Indices: 129318904--129318958 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
129318894 ATAAGTATGA
*
129318904 ATATATAACAAATTTTCTTTAAAAAT
1 ATATATAACAAATTTTCTATAAAAAT
*
129318930 ATATATAACAAA-TTTGTATAATAAAT
1 ATATATAACAAATTTTCTATAA-AAAT
129318956 ATA
1 ATA
129318959 CTTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (26 bp):
ATATATAACAAATTTTCTATAAAAAT
Found at i:129320118 original size:15 final size:15
Alignment explanation
Indices: 129320094--129320123 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
129320084 TTTTAAACCT
129320094 AAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAC
129320109 AAAAACAAAAAAAAA
1 AAAAA-AAAAAAAAA
129320124 AACACTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:129323214 original size:40 final size:40
Alignment explanation
Indices: 129323153--129323356 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
129323143 CGGAATTTAG
* ** *
129323153 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
129323193 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
129323233 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
129323273 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * * * *
129323313 CCAGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
129323353 CCGG
1 CCGG
129323357 GTATCATTCA
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 146 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:129330072 original size:29 final size:29
Alignment explanation
Indices: 129330015--129330105 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 29
129330005 TGACGAGATT
129330015 GCACTAAGTGTGCGTGC--GAAATA-AT-
1 GCACTAAGTGTGCGTGCTGGAAATATATG
129330040 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
129330069 GCACTAAGTGTGCGTGCTGG-AA-ATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
129330096 GCACTAAGTG
1 GCACTAAGTG
129330106 CAAGCTGGGA
Statistics
Matches: 62, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
25 17 0.27
27 21 0.34
28 4 0.06
29 20 0.32
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGTGCTGGAAATATATG
Found at i:129330102 original size:27 final size:27
Alignment explanation
Indices: 129330015--129330105 Score: 134
Period size: 29 Copynumber: 3.4 Consensus size: 27
129330005 TGACGAGATT
129330015 GCACTAAGTGTGCGTGC--GAAATAAT-
1 GCACTAAGTGTGCGTGCTGGAAAT-ATG
129330040 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGG-AA-ATATG
129330069 GCACTAAGTGTGCGTGCTGGAAATATG
1 GCACTAAGTGTGCGTGCTGGAAATATG
129330096 GCACTAAGTG
1 GCACTAAGTG
129330106 CAAGCTGGGA
Statistics
Matches: 61, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
25 17 0.28
27 16 0.26
28 6 0.10
29 22 0.36
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (27 bp):
GCACTAAGTGTGCGTGCTGGAAATATG
Found at i:129330127 original size:54 final size:53
Alignment explanation
Indices: 129330015--129330127 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 53
129330005 TGACGAGATT
** * *
129330015 GCACTAAGTGTGCGTGCGAAATAATGCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCGAAATAATGCACTAAG-GTGCAAGCTGGAAAAATATC
129330069 GCACTAAGTGTGCGTGCTGGAAAT-ATGGCACTAA-GTGCAAGCTGGGAAAAATA-C
1 GCACTAAGTGTGCGTGC--GAAATAAT-GCACTAAGGTGCAAGCT-GGAAAAATATC
129330123 GCACT
1 GCACT
129330128 GGGTGTGCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
54 29 0.57
55 10 0.20
56 12 0.24
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (53 bp):
GCACTAAGTGTGCGTGCGAAATAATGCACTAAGGTGCAAGCTGGAAAAATATC
Found at i:129337960 original size:27 final size:29
Alignment explanation
Indices: 129337867--129337966 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
129337857 GTGACGAGAT
129337867 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
129337896 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
129337925 TGGCACTAAGTGTGCGTGCTGG-AA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
129337952 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
129337967 AAGCTAAAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
27 18 0.25
28 2 0.03
29 51 0.72
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:129337997 original size:26 final size:26
Alignment explanation
Indices: 129337868--129337984 Score: 81
Period size: 29 Copynumber: 4.2 Consensus size: 26
129337858 TGACGAGATT
** *
129337868 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCAAGCT--AAA-ATAC
** *
129337897 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCAAGCT--AAA-ATAC
** * *
129337926 GGCACTAAGTGTGCGTGCTGGAAATAT
1 GGCACTAAGTGTGCAAGCT-AAAATAC
129337953 GGCACTAAGTGTGCAAGCTAAAATAC
1 GGCACTAAGTGTGCAAGCTAAAATAC
129337979 GGCACT
1 GGCACT
129337985 GGGTGTGCGA
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
26 11 0.13
27 21 0.25
28 3 0.04
29 48 0.58
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (26 bp):
GGCACTAAGTGTGCAAGCTAAAATAC
Found at i:129340243 original size:40 final size:40
Alignment explanation
Indices: 129340199--129340384 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
129340189 GCTACTCGTT
* *
129340199 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
129340239 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
129340279 CCAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
129340319 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
129340360 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
129340385 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 13 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:129340311 original size:80 final size:79
Alignment explanation
Indices: 129340176--129340383 Score: 203
Period size: 80 Copynumber: 2.6 Consensus size: 79
129340166 CCTTCGGAGT
* *
129340176 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCGCACA
1 TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
129340241 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * * *
129340255 TTAACCCGGATTTAG-TAACTCGTACCAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCG
1 TTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCG
129340317 CACAAATGCCTTC-GGATC
62 CACAAATGCCTTCGGGA-C
* * * * *
129340335 TTAGTCCGGATATAG-TCACTTAGCACAAA-GCCTTTGGGACTTAGCCCGG
1 TTA-ACCGGATATAGCT-AC-TCGTACAAATGCCTTCGGGACATAGCCCGG
129340384 ACATCATTCG
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
79 11 0.10
80 85 0.79
81 11 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:129344863 original size:37 final size:39
Alignment explanation
Indices: 129344784--129345074 Score: 359
Period size: 37 Copynumber: 7.6 Consensus size: 39
129344774 TATTCGGATG
129344784 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTATGCTAGTGACT
**
129344824 ATATCCGGGCTAAGTCTAGAAGGC-TT-TGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTATGCTAGTGACT
*
129344861 ATATCCGGGCTAAGTCCCGAAGGCATTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTATGCTAGTGACT
* **
129344900 ATAT-C-GGCTAAGTCCCGAAGGCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTATGCTAGTGACT
129344937 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTATGCTAGTGACT
*
129344977 ATATCCGGGCTAAGT-CC-AAGGCATTTGTGCTAGTGAC-
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTATGCTAGTGACT
* * * *
129345014 -TATCCGGGCTAAGACGCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTATGCTAG-TGACT
*
129345053 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
129345075 TACTTGGGTT
Statistics
Matches: 224, Mismatches: 17, Indels: 21
0.85 0.06 0.08
Matches are distributed among these distances:
36 13 0.06
37 67 0.30
38 41 0.18
39 49 0.22
40 54 0.24
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTATGCTAGTGACT
Found at i:129344938 original size:76 final size:78
Alignment explanation
Indices: 129344784--129345074 Score: 413
Period size: 76 Copynumber: 3.8 Consensus size: 78
129344774 TATTCGGATG
**
129344784 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCTAGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
129344849 TT-GCTAGTGACT
66 TTGGCTAGTGACT
129344861 ATATCCGGGCTAAGTCCCGAAGGCATTT-TGCTAGTGACTATAT-C-GGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
129344923 TTGCGCTAGTGACT
66 TTG-GCTAGTGACT
129344937 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGT-CC-AAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC-
129345000 TTTGTGCTAGTGAC-
65 TTTG-GCTAGTGACT
* * * * *
129345014 -TATCCGGGCTAAGACGCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
129345075 TACTTGGGTT
Statistics
Matches: 197, Mismatches: 8, Indels: 18
0.88 0.04 0.08
Matches are distributed among these distances:
74 18 0.09
75 8 0.04
76 93 0.47
77 54 0.27
78 16 0.08
79 8 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCT
TTGGCTAGTGACT
Found at i:129352590 original size:40 final size:40
Alignment explanation
Indices: 129352223--129352572 Score: 574
Period size: 40 Copynumber: 8.8 Consensus size: 40
129352213 TACTCGGATG
*
129352223 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
129352263 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
129352303 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
129352343 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
129352383 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
129352423 GTATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
129352463 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
129352503 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
129352543 ATATCCGGGCTAAGACCCGAAGGCATTTGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT
129352573 ACGAGTTGCT
Statistics
Matches: 285, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 285 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:129352590 original size:80 final size:80
Alignment explanation
Indices: 129352223--129352570 Score: 642
Period size: 80 Copynumber: 4.3 Consensus size: 80
129352213 TACTCGGATG
129352223 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
129352288 TTTGCGCTAGTGACT
66 TTTGCGCTAGTGACT
129352303 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
129352368 TTTGCGCTAGTGACT
66 TTTGCGCTAGTGACT
*
129352383 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTGTATCCGGGCTAAGTCCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
*
129352448 TTTGCGCTAGTGACA
66 TTTGCGCTAGTGACT
*
129352463 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
**
129352528 TTTGTTCTAGTGACT
66 TTTGCGCTAGTGACT
*
129352543 ATATCCGGGCTAAGACCCGAAGGCATTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTT
129352571 GTACGAGTTG
Statistics
Matches: 260, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 260 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCC
TTTGCGCTAGTGACT
Found at i:129354931 original size:26 final size:25
Alignment explanation
Indices: 129354888--129354950 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
129354878 ATAGAACCTA
129354888 AAATTAAAATAATATTAAAGGAAAAT
1 AAATTAAAATAATATTAAA-GAAAAT
* *
129354914 AAATTAAAA-AGTACTTAAAGAACAT
1 AAATTAAAATAATA-TTAAAGAAAAT
129354939 AAA-TAAAGATAA
1 AAATTAAA-ATAA
129354951 AAGTGGAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.13
25 12 0.39
26 15 0.48
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (25 bp):
AAATTAAAATAATATTAAAGAAAAT
Found at i:129362784 original size:2 final size:2
Alignment explanation
Indices: 129362777--129362810 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
129362767 TTGGCTGTCT
129362777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129362811 CCTTCGAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:129363592 original size:49 final size:49
Alignment explanation
Indices: 129363465--129363730 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
129363455 CCCTTCGGGA
* *
129363465 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129363512 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129363559 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129363608 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129363657 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129363706 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
129363731 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:129365026 original size:2 final size:2
Alignment explanation
Indices: 129364989--129365017 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
129364979 TAAGGCATAC
129364989 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
129365018 CCTATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:129365582 original size:2 final size:2
Alignment explanation
Indices: 129365577--129365602 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
129365567 ATATTCGGCA
129365577 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
129365603 GACTAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:129367112 original size:29 final size:29
Alignment explanation
Indices: 129367074--129367176 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
129367064 GGTTGGAGAA
129367074 CTCGCACACACAGTGCCTCATTTACCGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
* * * * **
129367103 CTCGCTCACATAGTG-CTCGGTTAAGGGAAT
1 CTCGCACACACAGTGCCTC-ATTTACCG-AT
* *
129367133 -TCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
*
129367161 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
129367177 TCGGTTAAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
28 5 0.09
29 46 0.82
30 5 0.09
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCATTTACCGAT
Found at i:129367164 original size:58 final size:58
Alignment explanation
Indices: 129367040--129367192 Score: 238
Period size: 58 Copynumber: 2.7 Consensus size: 58
129367030 GTGCCCACTG
* *
129367040 ACCGATCTCGCACACATAGTGCTCGGTT--GGAGAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGG-GAATTCGCACACACAGTGCCTCAATT
*
129367097 ACCGATCTCGCTCACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
* *
129367155 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTC
129367193 ATACGGTAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 27 0.31
58 59 0.67
59 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAGGGAATTCGCACACACAGTGCCTCAATT
Found at i:129367290 original size:43 final size:43
Alignment explanation
Indices: 129367236--129367491 Score: 476
Period size: 43 Copynumber: 6.0 Consensus size: 43
129367226 CATCGGCATT
*
129367236 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
129367279 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
129367322 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
129367365 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
129367408 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
129367451 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
129367492 TAACTGCTCT
Statistics
Matches: 208, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 208 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:129367577 original size:40 final size:42
Alignment explanation
Indices: 129367470--129367643 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 42
129367460 AGGCACGAAG
* * * * * *
129367470 GCCCGAATACATATCACCGGCA-TAACTGCTCTTCGGGACCTG
1 GCCCGGATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * *
129367512 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
129367552 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
129367592 ACCTGGATATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGG--ATATATATCACCAGCACGAATGCTCTTCGGGACTTA
129367636 GCCCGGAT
1 GCCCGGAT
129367644 CATCGTCGAG
Statistics
Matches: 100, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
40 54 0.54
41 3 0.03
42 12 0.12
43 1 0.01
44 30 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:129368827 original size:2 final size:2
Alignment explanation
Indices: 129368820--129368851 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
129368810 TTGGCTGTCT
129368820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129368852 CCTTCGAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:129369633 original size:49 final size:49
Alignment explanation
Indices: 129369506--129369771 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
129369496 CCCTTCGGGA
* *
129369506 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129369553 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129369600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129369649 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
129369698 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129369747 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
129369772 TGTACAGACT
Statistics
Matches: 207, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 157 0.76
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:129371066 original size:2 final size:2
Alignment explanation
Indices: 129371031--129371057 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
129371021 TAAGGCATAC
129371031 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
129371058 CCTATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:129377386 original size:55 final size:55
Alignment explanation
Indices: 129377290--129377393 Score: 127
Period size: 55 Copynumber: 1.9 Consensus size: 55
129377280 ACGATTGCTT
** * * * *
129377290 GGCACGGGCGTGTTGCATGCCTGTGTTAATTTGACATGTTCGGCCATGGTTTCAA
1 GGCACGGGCGTGTCACATGCCCGAGTTAATTTGACAGGTTCGCCCATGGTTTCAA
** *
129377345 GGCACGGGCGTGTCACATGCCCGAGTTGTTTTGGCAGGTTCGCCCATGG
1 GGCACGGGCGTGTCACATGCCCGAGTTAATTTGACAGGTTCGCCCATGG
129377394 CGATTTATCG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 40 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (55 bp):
GGCACGGGCGTGTCACATGCCCGAGTTAATTTGACAGGTTCGCCCATGGTTTCAA
Found at i:129389335 original size:40 final size:39
Alignment explanation
Indices: 129389244--129389345 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 39
129389234 ATCACGATTT
*
129389244 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
129389284 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
129389324 GCACAATTGCCTTCGGGTCTTA
1 GCACAA-TGCCTTCGGGTCTTA
129389346 ACCGGTTATA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 51 0.91
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:129401537 original size:33 final size:33
Alignment explanation
Indices: 129401471--129401540 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
129401461 ACAAGTCATG
* * ** *
129401471 CATGAATCCTTCTAAGCTTTGAACCTGGTCGTA
1 CATGAATCCTCCTAAGCATTGAACCAAGCCGTA
129401504 CATGAATCCTCCTAAGCATTGAACCAAGCCGTA
1 CATGAATCCTCCTAAGCATTGAACCAAGCCGTA
129401537 CATG
1 CATG
129401541 CATCTAGCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (33 bp):
CATGAATCCTCCTAAGCATTGAACCAAGCCGTA
Found at i:129403074 original size:20 final size:18
Alignment explanation
Indices: 129403019--129403077 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
129403009 AACAACTCAA
*
129403019 TTTCATTTCTCTCTTTTT
1 TTTCATTTTTCTCTTTTT
*
129403037 TCTTC-TTTTTCTTTTTTT
1 T-TTCATTTTTCTCTTTTT
*
129403055 TTTCATTTTTACTCTCTTT
1 TTTCATTTTT-CTCTTTTT
129403074 TTTC
1 TTTC
129403078 CTCTCTCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
17 3 0.09
18 18 0.53
19 13 0.38
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTCATTTTTCTCTTTTT
Found at i:129406527 original size:40 final size:40
Alignment explanation
Indices: 129406472--129406627 Score: 276
Period size: 40 Copynumber: 3.9 Consensus size: 40
129406462 AGATATAGCT
*
129406472 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
129406512 ACTCGCACAATTGCCTTCAGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
129406552 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
129406592 ACTCGCGCAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
129406628 CATCCGAATA
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:129413976 original size:33 final size:32
Alignment explanation
Indices: 129413904--129413981 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
129413894 ATGCATGTAA
* ** *
129413904 CAAGTCATGCATGAATCCTTTCAGCCTTGAAC
1 CAAGTCGTGCATGAATCCTCCCAGCATTGAAC
** *
129413936 CTGGTCGTACATGAATCCTCCCAAGCATTGAAC
1 CAAGTCGTGCATGAATCCTCCC-AGCATTGAAC
129413969 CAAGTCGTGCATG
1 CAAGTCGTGCATG
129413982 CATCTAGCTT
Statistics
Matches: 35, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
32 16 0.46
33 19 0.54
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (32 bp):
CAAGTCGTGCATGAATCCTCCCAGCATTGAAC
Found at i:129421864 original size:38 final size:39
Alignment explanation
Indices: 129421786--129421874 Score: 112
Period size: 38 Copynumber: 2.3 Consensus size: 39
129421776 ATTTTAAGTC
* *
129421786 TTTAATTATGTCATAATTTGAACATCATTAATATGAG-T
1 TTTAATTATGTCATAATCTGAACATCATTAATAAGAGTT
*
129421824 TTTAATTATGTCATAATCTGAACAT-TTTCAATAA-AGGTT
1 TTTAATTATGTCATAATCTGAACATCATT-AATAAGA-GTT
129421863 TTTAATTATGTC
1 TTTAATTATGTC
129421875 GCAGTTTAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
37 3 0.07
38 29 0.64
39 13 0.29
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.46
Consensus pattern (39 bp):
TTTAATTATGTCATAATCTGAACATCATTAATAAGAGTT
Found at i:129430917 original size:21 final size:21
Alignment explanation
Indices: 129430887--129430926 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
129430877 TCGATTTGAG
*
129430887 AAAATCATTAAAAATTTTATA
1 AAAATAATTAAAAATTTTATA
**
129430908 AAAATAATTACGAATTTTA
1 AAAATAATTAAAAATTTTA
129430927 ATTTATATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (21 bp):
AAAATAATTAAAAATTTTATA
Done.