Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 423 of 770
Found at i:130588490 original size:15 final size:14
Alignment explanation
Indices: 130588460--130588495 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
130588450 AATATTATTA
*
130588460 ATATATTTTAATTT
1 ATATATTTTAAATT
130588474 ATATATATTTAAATT
1 ATATAT-TTTAAATT
130588489 ATATATT
1 ATATATT
130588496 GAAATGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATATATTTTAAATT
Found at i:130588707 original size:21 final size:21
Alignment explanation
Indices: 130588667--130588705 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
130588657 AAATCATGGA
130588667 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
130588688 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
130588706 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:130591247 original size:12 final size:12
Alignment explanation
Indices: 130591230--130591254 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
130591220 ATTTTATAAC
130591230 ATAAATATTGTT
1 ATAAATATTGTT
130591242 ATAAATATTGTT
1 ATAAATATTGTT
130591254 A
1 A
130591255 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:130603014 original size:13 final size:15
Alignment explanation
Indices: 130602988--130603027 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
130602978 CCTTAATTTA
130602988 TTAATATTTATTAAT
1 TTAATATTTATTAAT
130603003 TTAAT-TTT-TTAAT
1 TTAATATTTATTAAT
130603016 TTAATATTTATT
1 TTAATATTTATT
130603028 TAATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATATTTATTAAT
Found at i:130605814 original size:14 final size:14
Alignment explanation
Indices: 130605795--130605823 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
130605785 ACAGATGGAT
130605795 TCGTATAATTCTTA
1 TCGTATAATTCTTA
130605809 TCGTATAATTCTTA
1 TCGTATAATTCTTA
130605823 T
1 T
130605824 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:130610056 original size:20 final size:21
Alignment explanation
Indices: 130609990--130610058 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
130609980 TCACTTCGTT
130609990 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
130610011 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
130610032 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
130610053 -CTTTTT
1 TCTTTTT
130610059 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:130612457 original size:18 final size:18
Alignment explanation
Indices: 130612424--130612517 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
130612414 AAGGTTTTCT
130612424 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
130612439 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
130612457 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
130612475 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
130612493 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
130612511 TATTGAT
1 TATTGAT
130612518 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:130620050 original size:40 final size:39
Alignment explanation
Indices: 130619885--130620068 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
130619875 AAATTGAATG
* * *
130619885 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
130619925 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
130619965 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
130620005 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
130620044 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
130620069 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:130620093 original size:80 final size:81
Alignment explanation
Indices: 130619925--130620113 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
130619915 GCTGGAAATT
* * * *
130619925 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
130619990 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
130620006 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
130620069 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
130620085 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
130620114 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:130628167 original size:40 final size:39
Alignment explanation
Indices: 130628002--130628185 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
130627992 AAATTGAATG
* * *
130628002 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
130628042 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
130628082 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
130628122 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
130628161 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
130628186 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:130628210 original size:80 final size:81
Alignment explanation
Indices: 130628042--130628230 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
130628032 GCTGGAAATT
* * * *
130628042 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
130628107 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
130628123 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
130628186 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
130628202 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
130628231 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:130639294 original size:2 final size:2
Alignment explanation
Indices: 130639289--130639343 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
130639279 AACTAATGGC
* * *
130639289 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
130639328 AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
130639344 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:130639321 original size:22 final size:23
Alignment explanation
Indices: 130639289--130639340 Score: 88
Period size: 22 Copynumber: 2.3 Consensus size: 23
130639279 AACTAATGGC
*
130639289 ATATATACATAATATATATATAT
1 ATATACACATAATATATATATAT
130639312 A-ATACACATAATATATATATAT
1 ATATACACATAATATATATATAT
130639334 ATATACA
1 ATATACA
130639341 TATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATACACATAATATATATATAT
Found at i:130639878 original size:11 final size:12
Alignment explanation
Indices: 130639862--130639898 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
130639852 AGAAAAAAAA
130639862 GGAAGAGAG-AG
1 GGAAGAGAGAAG
130639873 GGAAGAGAGAAG
1 GGAAGAGAGAAG
130639885 GG-AGAGAGAAG
1 GGAAGAGAGAAG
130639896 GGA
1 GGA
130639899 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:130639899 original size:11 final size:11
Alignment explanation
Indices: 130639860--130639909 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
130639850 AAAGAAAAAA
*
130639860 AAGGAAGAGAG
1 AAGGGAGAGAG
130639871 -AGGGAAGAGAG
1 AAGGG-AGAGAG
130639882 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
130639893 AAGGGAGGGGG
1 AAGGGAGAGAG
130639904 AAGGGA
1 AAGGGA
130639910 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:130640204 original size:14 final size:15
Alignment explanation
Indices: 130640169--130640204 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
130640159 TTTTTTGGTT
130640169 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
130640184 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
130640198 TTTTTTT
1 TTTTTTT
130640205 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:130640204 original size:33 final size:30
Alignment explanation
Indices: 130640167--130640242 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 30
130640157 TTTTTTTTGG
*
130640167 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATT
*
130640200 TTTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTT-TTGCTGGAATTTTTTGCTGGATT
130640231 TTTTTTTTTGCT
1 TTTTTTTTTGCT
130640243 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 10 0.26
33 19 0.49
34 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.18, T:0.63
Consensus pattern (30 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATT
Found at i:130640205 original size:15 final size:16
Alignment explanation
Indices: 130640168--130640205 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
130640158 TTTTTTTGGT
130640168 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
130640184 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
130640198 TTTTTTTT
1 TTTTTTTT
130640206 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:130640234 original size:14 final size:15
Alignment explanation
Indices: 130640168--130640236 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
130640158 TTTTTTTGGT
130640168 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
130640183 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
130640198 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
130640217 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
130640229 TTTTTTTT
1 TTTTTTTT
130640237 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:130640683 original size:35 final size:35
Alignment explanation
Indices: 130640643--130640748 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
130640633 GGGGTGTGTG
*
130640643 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
130640678 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
130640713 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
130640748 A
1 A
130640749 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:130641150 original size:22 final size:22
Alignment explanation
Indices: 130641116--130641161 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
130641106 AATTTTGGCT
* * *
130641116 CCTTTATATTAAACTCCAAAAC
1 CCTTCATACTAAACCCCAAAAC
130641138 CCTTCATACTAAACCCCAAAAC
1 CCTTCATACTAAACCCCAAAAC
130641160 CC
1 CC
130641162 AATACATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (22 bp):
CCTTCATACTAAACCCCAAAAC
Found at i:130641178 original size:20 final size:20
Alignment explanation
Indices: 130641155--130641193 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
130641145 ACTAAACCCC
* *
130641155 AAAACCCAATACATTAAACT
1 AAAACCCAACAAATTAAACT
*
130641175 AAAATCCAACAAATTAAAC
1 AAAACCCAACAAATTAAAC
130641194 CCAATTTCAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAACCCAACAAATTAAACT
Found at i:130641755 original size:25 final size:25
Alignment explanation
Indices: 130641726--130641832 Score: 178
Period size: 25 Copynumber: 4.2 Consensus size: 25
130641716 TGATACAAAT
130641726 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
130641751 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
*
130641777 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
130641802 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
130641827 TGATAA
1 TGATAA
130641833 GAATTTCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 54 0.69
26 24 0.31
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:130641781 original size:51 final size:50
Alignment explanation
Indices: 130641726--130641832 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 50
130641716 TGATACAAAT
130641726 TGATAATGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGG-TTAGGTAAATATTCCA
* * *
130641777 TGATAATGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
130641827 TGATAA
1 TGATAA
130641833 GAATTTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 20 0.38
51 33 0.62
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (50 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
Found at i:130643344 original size:25 final size:26
Alignment explanation
Indices: 130643316--130643367 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
130643306 TTTACAGTTT
130643316 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
130643341 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
130643367 T
1 T
130643368 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:130643859 original size:136 final size:136
Alignment explanation
Indices: 130643614--130644035 Score: 790
Period size: 136 Copynumber: 3.1 Consensus size: 136
130643604 GAGTAGTCTC
*
130643614 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
130643679 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
130643744 ACTGTTA
130 ACTGTTA
130643751 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
130643816 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
130643881 CTGTTA
131 CTGTTA
130643887 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
* *
130643952 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
130644017 CTGTTA
131 CTGTTA
**
130644023 CCTGAATGGGCTT
1 CCCAAATGGGCTT
130644036 AGGCCCAATA
Statistics
Matches: 280, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 260 0.93
137 20 0.07
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:130645763 original size:17 final size:18
Alignment explanation
Indices: 130645733--130645855 Score: 64
Period size: 17 Copynumber: 7.1 Consensus size: 18
130645723 TAGATTAAGT
*
130645733 TTTTATTATATATTGCTA
1 TTTTATTATATATTACTA
*
130645751 TTTT-TTATTTATTACTA
1 TTTTATTATATATTACTA
* *
130645768 --TTATCAT-TATTATTA
1 TTTTATTATATATTACTA
*
130645783 TTTTA-TAT-TATTATTA
1 TTTTATTATATATTACTA
* * *
130645799 TTATGTTATAT-TTAGTA
1 TTTTATTATATATTACTA
* *
130645816 TTATTTTTA-ATATTACATT
1 TT-TTATTATATATTAC-TA
*
130645835 TTTTACTATTATATTACTA
1 TTTTATTA-TATATTACTA
130645854 TT
1 TT
130645856 ATCTTTGTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
15 9 0.11
16 16 0.20
17 26 0.32
18 16 0.20
19 6 0.08
20 7 0.09
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTATTATATATTACTA
Found at i:130645781 original size:3 final size:3
Alignment explanation
Indices: 130645759--130645994 Score: 145
Period size: 3 Copynumber: 80.3 Consensus size: 3
130645749 TATTTTTTAT
* * *
130645759 TTA TTA CTA TTA TCA TTA TTA TTA TT- TTA -TA TTA TTA TTA TTA -TG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
130645804 TTA -TA TTTA GTA TTA TTT TTA ATA TTA -CA TT- TT- TTA CTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
130645846 -TA TTA CTA TTA TCT- TTG TTA TT- TTC TCTA TTA ATA TTTA TTA CTCTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA -TTA TTA -T-TA
* ** * *
130645893 TTT TTA ACA TTA TTA TTA -TA TTA -TA TTA TTT TTA TATC TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
130645937 TTA TTG CTA GTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
130645985 TTA TTA TTA T
1 TTA TTA TTA T
130645995 ATACAATATT
Statistics
Matches: 178, Mismatches: 37, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
2 21 0.12
3 144 0.81
4 11 0.06
5 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:130647174 original size:2 final size:2
Alignment explanation
Indices: 130647167--130647205 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
130647157 ATCACTATTC
130647167 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130647206 TACGTACATA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:130649144 original size:21 final size:23
Alignment explanation
Indices: 130649097--130649150 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
130649087 CATTCAAGAT
**
130649097 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
130649120 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
130649141 AAAAT-ATATA
1 AAAATAATATA
130649151 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:130649188 original size:25 final size:23
Alignment explanation
Indices: 130649160--130649221 Score: 54
Period size: 25 Copynumber: 2.5 Consensus size: 23
130649150 AATGTGTAAA
*
130649160 AAAAGTTTGAAATATATAATCTAT
1 AAAA-TTTGAAATAAATAATCTAT
*
130649184 GAAAATATT-AAAGTAAATAATGTAT
1 -AAAAT-TTGAAA-TAAATAATCTAT
130649209 AAAAATTTGAAAT
1 -AAAATTTGAAAT
130649222 GAGCATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 7 0.23
25 24 0.77
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.34
Consensus pattern (23 bp):
AAAATTTGAAATAAATAATCTAT
Found at i:130649385 original size:15 final size:15
Alignment explanation
Indices: 130649361--130649409 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
130649351 ATATAAATAG
*
130649361 AAATAAAAATAAAAT
1 AAATAGAAATAAAAT
*
130649376 AAATAGAAATATAAT
1 AAATAGAAATAAAAT
130649391 AATAGTAGAAATATAAAT
1 AA-A-TAGAAATA-AAAT
130649409 A
1 A
130649410 GATAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 15 0.54
16 1 0.04
17 8 0.29
18 4 0.14
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (15 bp):
AAATAGAAATAAAAT
Found at i:130649435 original size:29 final size:28
Alignment explanation
Indices: 130649371--130649426 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
130649361 AAATAAAAAT
*
130649371 AAAATAAATAGA-AATATAATAATAGTAG
1 AAAATAAATAGATAA-ATAAAAATAGTAG
130649399 AAATATAAATAGATAAATAAAAATAGTA
1 AAA-ATAAATAGATAAATAAAAATAGTA
130649427 TTAGAATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 3 0.12
29 20 0.80
30 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (28 bp):
AAAATAAATAGATAAATAAAAATAGTAG
Found at i:130651662 original size:35 final size:32
Alignment explanation
Indices: 130651606--130651670 Score: 103
Period size: 35 Copynumber: 1.9 Consensus size: 32
130651596 AAATTGAAAT
130651606 GAAATGGAAAAGAAAATAATTCAATTCCAATA
1 GAAATGGAAAAGAAAATAATTCAATTCCAATA
130651638 GAAATAGGAAAAGAGAGAATAATTCAATTCCAA
1 GAAAT-GGAAAAGA-A-AATAATTCAATTCCAA
130651671 ATTGAAGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 5 0.17
33 8 0.27
34 1 0.03
35 16 0.53
ACGTcount: A:0.55, C:0.09, G:0.15, T:0.20
Consensus pattern (32 bp):
GAAATGGAAAAGAAAATAATTCAATTCCAATA
Found at i:130655224 original size:6 final size:6
Alignment explanation
Indices: 130655213--130655237 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
130655203 GCGTGCGGTG
130655213 GCCGGC GCCGGC GCCGGC GCCGGC G
1 GCCGGC GCCGGC GCCGGC GCCGGC G
130655238 AGCCTCCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.48, G:0.52, T:0.00
Consensus pattern (6 bp):
GCCGGC
Found at i:130655341 original size:21 final size:22
Alignment explanation
Indices: 130655290--130655346 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
130655280 GAAAATCCCC
130655290 TCTCTCCTTTCTCCTCTCCCTTT
1 TCTCT-CTTTCTCCTCTCCCTTT
*
130655313 TCTCTC-TTCTCCTCTCCTTTT
1 TCTCTCTTTCTCCTCTCCCTTT
* *
130655334 TTTTTCTTTCTCC
1 TCTCTCTTTCTCC
130655347 CCTTCCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.60
22 7 0.23
23 5 0.17
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (22 bp):
TCTCTCTTTCTCCTCTCCCTTT
Found at i:130655809 original size:3 final size:3
Alignment explanation
Indices: 130655801--130655864 Score: 103
Period size: 3 Copynumber: 21.0 Consensus size: 3
130655791 TGTATTTTTA
130655801 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
130655847 TAT TAT ATAT T-T TAT TAT
1 TAT TAT -TAT TAT TAT TAT
130655865 ATGCATATAC
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.03
3 50 0.86
4 6 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:130655865 original size:12 final size:13
Alignment explanation
Indices: 130655793--130655866 Score: 93
Period size: 12 Copynumber: 5.8 Consensus size: 13
130655783 AATTTTCTTG
*
130655793 TATTTTTATATTAT
1 TATTATTATA-TAT
130655807 TATTATTAT-TAT
1 TATTATTATATAT
130655819 TATTATTAT-TAT
1 TATTATTATATAT
130655831 TATTATTAT-TAT
1 TATTATTATATAT
130655843 ATATTATTATATAT
1 -TATTATTATATAT
130655857 T-TTATTATAT
1 TATTATTATAT
130655867 GCATATACAT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
12 36 0.63
13 10 0.18
14 11 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTATTATATAT
Found at i:130659125 original size:54 final size:54
Alignment explanation
Indices: 130659043--130659152 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
130659033 GGCTCGAACC
130659043 AACTTCTTATGGTTATGGAAAATATTCGTGTACATATGACTTAAATATTCTTAA
1 AACTTCTTATGGTTATGGAAAATATTCGTGTACATATGACTTAAATATTCTTAA
*
130659097 AACTTTTTATGGTTATGGAAAATATTCGTGTACATATGACTTAAATATTCTTAA
1 AACTTCTTATGGTTATGGAAAATATTCGTGTACATATGACTTAAATATTCTTAA
130659151 AA
1 AA
130659153 TAATTAGAGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (54 bp):
AACTTCTTATGGTTATGGAAAATATTCGTGTACATATGACTTAAATATTCTTAA
Found at i:130662274 original size:26 final size:26
Alignment explanation
Indices: 130662237--130662372 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
130662227 TGATACAAAT
* *
130662237 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
130662263 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
130662289 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
130662315 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
130662341 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
130662367 TGATAA
1 TGATAA
130662373 GAATATCATG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:130664753 original size:135 final size:135
Alignment explanation
Indices: 130664510--130664792 Score: 532
Period size: 135 Copynumber: 2.1 Consensus size: 135
130664500 TATTGGGCCT
**
130664510 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
130664575 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA-
130664640 ATATGC
130 ATATGC
130664646 AAGCCCATTTGGGTAACAGTGGTACTGGG-CAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
130664710 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
130664775 TATGC
131 TATGC
130664780 AAGCCCATTTGGG
1 AAGCCCATTTGGG
130664793 GAGACTACTC
Statistics
Matches: 145, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
134 19 0.13
135 99 0.68
136 27 0.19
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
TATGC
Found at i:130665076 original size:25 final size:26
Alignment explanation
Indices: 130665039--130665091 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
130665029 TCAAACATGC
130665039 ATTTAGGTCAATTTA-ACCCTAGGGGT
1 ATTTAGGTCAATTTACA-CCTAGGGGT
* *
130665065 ATTTCGGT-AATTTTCACCTAGGGGT
1 ATTTAGGTCAATTTACACCTAGGGGT
130665090 AT
1 AT
130665092 AACAGTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTACACCTAGGGGT
Found at i:130665099 original size:25 final size:25
Alignment explanation
Indices: 130665056--130665104 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
130665046 TCAATTTAAC
** *
130665056 CCTAGGGGTATTTCGGTAATTTTCA
1 CCTAGGGGTATAACAGTAATTTTCA
130665081 CCTAGGGGTATAACAGTAATTTTC
1 CCTAGGGGTATAACAGTAATTTTC
130665105 TATACATAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (25 bp):
CCTAGGGGTATAACAGTAATTTTCA
Found at i:130666607 original size:26 final size:26
Alignment explanation
Indices: 130666571--130666705 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
130666561 ACATGATATT
130666571 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
130666597 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
130666623 TTATCATGGAACATTTA-CTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
130666648 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
130666674 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
130666700 TTATCA
1 TTATCA
130666706 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 23 0.23
26 79 0.77
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:130666657 original size:51 final size:52
Alignment explanation
Indices: 130666571--130666705 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
130666561 ACATGATATT
* *
130666571 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
130666623 TTATCATGGAACATTTA-CTAACCTATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
130666674 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
130666706 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
51 50 0.62
52 30 0.38
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:130670651 original size:134 final size:136
Alignment explanation
Indices: 130670409--130670691 Score: 525
Period size: 134 Copynumber: 2.1 Consensus size: 136
130670399 TATTGGGCCT
**
130670409 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
130670474 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
130670539 ATATGC
131 ATATGC
130670545 AAGCCCATTTGGGTAACAGTGGTACT-GG-CAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
130670608 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAT
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
130670673 ATATGC
131 ATATGC
130670679 AAGCCCATTTGGG
1 AAGCCCATTTGGG
130670692 GAGACTACTC
Statistics
Matches: 144, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
134 118 0.82
135 2 0.01
136 24 0.17
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:130670976 original size:25 final size:27
Alignment explanation
Indices: 130670939--130670992 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
130670929 TCAAACATGC
130670939 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
130670965 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
130670991 AT
1 AT
130670993 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:130672507 original size:26 final size:26
Alignment explanation
Indices: 130672471--130672606 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
130672461 CATGATATTT
130672471 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
130672497 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
130672523 TTATCATGGAACATTTACTTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
130672549 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
130672575 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
130672601 TTATCA
1 TTATCA
130672607 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:130673020 original size:33 final size:31
Alignment explanation
Indices: 130672983--130673045 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 31
130672973 AAAAAAAATA
*
130672983 TATATATAAATAATAGTATTAGAAATCATATAG
1 TATATATAAATAATAATATTA-AAAT-ATATAG
* *
130673016 TATATATAACTGATAATATTAAAATATATA
1 TATATATAAATAATAATATTAAAATATATA
130673046 CATAATATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 5 0.19
32 4 0.15
33 18 0.67
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.38
Consensus pattern (31 bp):
TATATATAAATAATAATATTAAAATATATAG
Found at i:130673220 original size:14 final size:16
Alignment explanation
Indices: 130673191--130673222 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
130673181 AGGTAAATAT
130673191 AATAAAATGATATTAA
1 AATAAAATGATATTAA
130673207 AATAAAA-G-TATTAA
1 AATAAAATGATATTAA
130673221 AA
1 AA
130673223 ACAGTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGATATTAA
Found at i:130673268 original size:3 final size:3
Alignment explanation
Indices: 130673260--130673313 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
130673250 ACAAGGATAT
130673260 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
130673308 ATA ATA
1 ATA ATA
130673314 TTGAAACACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:130673431 original size:3 final size:3
Alignment explanation
Indices: 130673417--130673461 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
130673407 AATGTATTTC
*
130673417 AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
130673462 TGTTAGAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:130677670 original size:11 final size:12
Alignment explanation
Indices: 130677654--130677689 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
130677644 AGGAAAAAAA
130677654 GAAGAGAG-AGG
1 GAAGAGAGAAGG
130677665 GAAGAGAGAAGG
1 GAAGAGAGAAGG
130677677 G-AGAGAGAAGG
1 GAAGAGAGAAGG
130677688 GA
1 GA
130677690 GGGGAATCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:130677805 original size:12 final size:12
Alignment explanation
Indices: 130677788--130677831 Score: 79
Period size: 12 Copynumber: 3.6 Consensus size: 12
130677778 GTAAATTTTT
130677788 TTTTTTTGTATA
1 TTTTTTTGTATA
130677800 TTTTTTTTGTATA
1 -TTTTTTTGTATA
130677813 TTTTTTTGTATA
1 TTTTTTTGTATA
130677825 TTTTTTT
1 TTTTTTT
130677832 ATGTTTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.80
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:130677805 original size:13 final size:13
Alignment explanation
Indices: 130677787--130677831 Score: 83
Period size: 13 Copynumber: 3.5 Consensus size: 13
130677777 GGTAAATTTT
130677787 TTTTTTTTGTATA
1 TTTTTTTTGTATA
130677800 TTTTTTTTGTATA
1 TTTTTTTTGTATA
130677813 -TTTTTTTGTATA
1 TTTTTTTTGTATA
130677825 TTTTTTT
1 TTTTTTT
130677832 ATGTTTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.39
13 19 0.61
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (13 bp):
TTTTTTTTGTATA
Found at i:130678252 original size:35 final size:35
Alignment explanation
Indices: 130678212--130678282 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
130678202 GGAGTGTGTG
*
130678212 ATGGTGTTGGTGGCAGACAGCATGGGAGAATGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
*
130678247 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
130678282 A
1 A
130678283 GAGGCAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.10, G:0.46, T:0.18
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
Found at i:130679227 original size:72 final size:72
Alignment explanation
Indices: 130679085--130679356 Score: 438
Period size: 72 Copynumber: 3.8 Consensus size: 72
130679075 CATGTGAACC
* * * *
130679085 GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAATAGAAATTGAAAATACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAA
*
130679150 TGTGTCTT
65 CGTGTCTT
**
130679158 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
130679223 GTGTCTT
66 GTGTCTT
*
130679230 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
130679295 GTGTCTT
66 GTGTCTT
*
130679302 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGACGAACAGAAATTGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA-AAACAGAAATTGAAA
130679357 AACAGAAATT
Statistics
Matches: 186, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
71 6 0.03
72 150 0.81
73 30 0.16
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (72 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
GTGTCTT
Found at i:130679360 original size:14 final size:14
Alignment explanation
Indices: 130679343--130679371 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
130679333 GATTTTGACG
130679343 AACAGAAATTGAAA
1 AACAGAAATTGAAA
130679357 AACAGAAATTGAAA
1 AACAGAAATTGAAA
130679371 A
1 A
130679372 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:130692557 original size:47 final size:49
Alignment explanation
Indices: 130692331--130692596 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
130692321 AGTCTGTACA
*
130692331 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
130692380 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130692429 TGAAAGTGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130692478 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
130692527 TG-AAG-GTGTATATATGTGATAAGGCTTAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130692574 TGAAA--GTGTATAAATGTGATAAG
1 TGAAAGTGTGTATATATGTGATAAG
130692597 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 58 0.28
48 5 0.02
49 145 0.70
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:130693258 original size:2 final size:2
Alignment explanation
Indices: 130693251--130693280 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
130693241 TATTCGAAGG
130693251 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130693281 AGACAGCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:130694658 original size:43 final size:43
Alignment explanation
Indices: 130694609--130694906 Score: 553
Period size: 43 Copynumber: 7.0 Consensus size: 43
130694599 AGAGCAGTTA
130694609 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
130694652 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130694695 TGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
130694738 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130694781 TGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130694824 TGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130694867 T-CCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTT
130694907 AATGCCGATG
Statistics
Matches: 250, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
42 37 0.15
43 213 0.85
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
Found at i:130695008 original size:29 final size:29
Alignment explanation
Indices: 130694966--130695098 Score: 101
Period size: 29 Copynumber: 4.7 Consensus size: 29
130694956 CTTTAACCGA
*
130694966 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAAATGAG
* ** **
130694995 GCACTGTGTGTGCGA-ATTCCTTAACCGA-
1 GCACTATGTGTGCGAGA-TCAGTAAATGAG
* *
130695023 GCACTATGTGAGCGAGATCGGTAAATGAG
1 GCACTATGTGTGCGAGATCAGTAAATGAG
* * *** **
130695052 GCACTGTGTGTGCGAGTTCTCCAACCGA-
1 GCACTATGTGTGCGAGATCAGTAAATGAG
130695080 GCACTATGTGTGCGAGATC
1 GCACTATGTGTGCGAGATC
130695099 GGTCAGTGGG
Statistics
Matches: 80, Mismatches: 21, Indels: 7
0.74 0.19 0.06
Matches are distributed among these distances:
28 38 0.47
29 42 0.52
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAAATGAG
Found at i:130695032 original size:28 final size:28
Alignment explanation
Indices: 130694950--130695094 Score: 98
Period size: 29 Copynumber: 5.1 Consensus size: 28
130694940 ATTACCGTAT
130694950 GAATTCCTTTAACCGAGCACTATGTGTGC
1 GAATTCC-TTAACCGAGCACTATGTGTGC
** ** *
130694979 GAGA-TCAGTAATTGAGGCACTGTGTGTGC
1 GA-ATTCCTTAACCGA-GCACTATGTGTGC
*
130695008 GAATTCCTTAACCGAGCACTATGTGAGC
1 GAATTCCTTAACCGAGCACTATGTGTGC
** ** *
130695036 GAGA-TCGGTAAATGAGGCACTGTGTGTGC
1 GA-ATTCCTTAACCGA-GCACTATGTGTGC
* *
130695065 GAGTT-CTCCAACCGAGCACTATGTGTGC
1 GAATTCCT-TAACCGAGCACTATGTGTGC
130695093 GA
1 GA
130695095 GATCGGTCAG
Statistics
Matches: 85, Mismatches: 24, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
28 40 0.47
29 44 0.52
30 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (28 bp):
GAATTCCTTAACCGAGCACTATGTGTGC
Found at i:130695039 original size:57 final size:57
Alignment explanation
Indices: 130694950--130695098 Score: 228
Period size: 57 Copynumber: 2.6 Consensus size: 57
130694940 ATTACCGTAT
*
130694950 GAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGC
1 GAATTCC-TTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
* *
130695008 GAATTCCTTAACCGAGCACTATGTGAGCGAGATCGGTAAATGAGGCACTGTGTGTGC
1 GAATTCCTTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
* *
130695065 GAGTT-CTCCAACCGAGCACTATGTGTGCGAGATC
1 GAATTCCT-TAACCGAGCACTATGTGTGCGAGATC
130695099 GGTCAGTGGG
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
56 2 0.02
57 75 0.89
58 7 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (57 bp):
GAATTCCTTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
Found at i:130695095 original size:28 final size:27
Alignment explanation
Indices: 130694959--130695098 Score: 111
Period size: 28 Copynumber: 5.0 Consensus size: 27
130694949 TGAATTCCTT
*
130694959 TAACCGAGCACTATGTGTGCGAGATCAG
1 TAACCGAGCACTATGTGTGCGAGATC-C
** *
130694987 TAATTGAGGCACTGTGTGTGCGA-ATTCC
1 TAACCGA-GCACTATGTGTGCGAGA-TCC
* *
130695015 TTAACCGAGCACTATGTGAGCGAGATCGG
1 -TAACCGAGCACTATGTGTGCGAGATC-C
** * *
130695044 TAAATGAGGCACTGTGTGTGCGAGTTCTC
1 TAACCGA-GCACTATGTGTGCGAGATC-C
*
130695073 CAACCGAGCACTATGTGTGCGAGATC
1 TAACCGAGCACTATGTGTGCGAGATC
130695099 GGTCAGTGGG
Statistics
Matches: 85, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
28 43 0.51
29 42 0.49
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (27 bp):
TAACCGAGCACTATGTGTGCGAGATCC
Found at i:130695111 original size:28 final size:28
Alignment explanation
Indices: 130694966--130695119 Score: 84
Period size: 28 Copynumber: 5.4 Consensus size: 28
130694956 CTTTAACCGA
*
130694966 GCACTATGTGTGCGAGATCAGT-AATTGAG
1 GCACTATGTGTGCGAGATCGGTCAA-TG-G
* * * * *
130694995 GCACTGTGTGTGCGA-ATTC-CTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAA-TGG
* *
130695023 GCACTATGTGAGCGAGATCGGTAAATGAG
1 GCACTATGTGTGCGAGATCGGTCAATG-G
* * * *
130695052 GCACTGTGTGTGCGAGTTC--TCCAACCGA
1 GCACTATGTGTGCGAGATCGGT-CAA-TGG
*
130695080 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAATGG
*
130695108 GCACTAAGTGTG
1 GCACTATGTGTG
130695120 TGAAATGAGA
Statistics
Matches: 93, Mismatches: 23, Indels: 19
0.69 0.17 0.14
Matches are distributed among these distances:
27 1 0.01
28 49 0.53
29 42 0.45
30 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATGG
Found at i:130696577 original size:2 final size:2
Alignment explanation
Indices: 130696536--130696565 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
130696526 TGTTTTAGTC
130696536 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130696566 TGCCGAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130697136 original size:2 final size:2
Alignment explanation
Indices: 130697131--130697155 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
130697121 CATATATAGG
130697131 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
130697156 GTATGCCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130698640 original size:47 final size:49
Alignment explanation
Indices: 130698414--130698679 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
130698404 AGTCTGTACA
*
130698414 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
130698463 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130698512 TGAAAGTGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130698561 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
130698610 TG-AAG-GTGTATATATGTGATAAGGCTTAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130698657 TGAAA--GTGTATAAATGTGATAAG
1 TGAAAGTGTGTATATATGTGATAAG
130698680 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 58 0.28
48 5 0.02
49 145 0.70
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:130699341 original size:2 final size:2
Alignment explanation
Indices: 130699334--130699367 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
130699324 TATTCGAAGG
130699334 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130699368 GACAGCCAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:130700957 original size:43 final size:43
Alignment explanation
Indices: 130700695--130700950 Score: 485
Period size: 43 Copynumber: 6.0 Consensus size: 43
130700685 AGAGCAGTTA
130700695 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
130700738 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130700781 TGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
130700824 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130700867 TGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
*
130700910 TGCCGGTGATATGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTT
130700951 AATGCCGATG
Statistics
Matches: 208, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 208 1.00
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
TGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTG
Found at i:130701052 original size:29 final size:29
Alignment explanation
Indices: 130701010--130701143 Score: 94
Period size: 29 Copynumber: 4.7 Consensus size: 29
130701000 CTTTAACCGA
*
130701010 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAAATGAG
* ** *
130701039 GCACTGTGTGTGCGA-ATTCCCTTAACTGA-
1 GCACTATGTGTGCGAGA-T-CAGTAAATGAG
* * *
130701068 GTACTATGTGAGCGAGATCGGTAAATGAG
1 GCACTATGTGTGCGAGATCAGTAAATGAG
* * *** **
130701097 GCACTGTGTGTGCGAGTTCTCCAACCGA-
1 GCACTATGTGTGCGAGATCAGTAAATGAG
130701125 GCACTATGTGTGCGAGATC
1 GCACTATGTGTGCGAGATC
130701144 GGTCAGTGGG
Statistics
Matches: 80, Mismatches: 21, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
28 25 0.31
29 47 0.59
30 8 0.10
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAAATGAG
Found at i:130701084 original size:58 final size:58
Alignment explanation
Indices: 130700994--130701143 Score: 214
Period size: 58 Copynumber: 2.6 Consensus size: 58
130700984 ATTACCGTAT
* *
130700994 GAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGC
1 GAATTCCCTTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
* * * *
130701052 GAATTCCCTTAACTGAGTACTATGTGAGCGAGATCGGTAAATGAGGCACTGTGTGTGC
1 GAATTCCCTTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
*
130701110 GAGTTCTCC--AACCGAGCACTATGTGTGCGAGATC
1 GAATTC-CCTTAACCGAGCACTATGTGTGCGAGATC
130701144 GGTCAGTGGG
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
57 22 0.27
58 57 0.70
59 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (58 bp):
GAATTCCCTTAACCGAGCACTATGTGTGCGAGATCAGTAAATGAGGCACTGTGTGTGC
Found at i:130702619 original size:2 final size:2
Alignment explanation
Indices: 130702584--130702608 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
130702574 TTTTAGTCAT
130702584 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
130702609 GCCGAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130704675 original size:47 final size:49
Alignment explanation
Indices: 130704449--130704714 Score: 450
Period size: 49 Copynumber: 5.5 Consensus size: 49
130704439 AGTCTGTACA
*
130704449 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
130704498 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130704547 TGAAAGTGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130704596 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
130704645 TG-AAG-GTGTATATATGTGATAAGGCTTAATGGCCAATGTGATGAATG
1 TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
130704692 TGAAA--GTGTATAAATGTGATAAG
1 TGAAAGTGTGTATATATGTGATAAG
130704715 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
47 58 0.28
48 5 0.02
49 145 0.70
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (49 bp):
TGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:130705375 original size:2 final size:2
Alignment explanation
Indices: 130705368--130705405 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
130705358 TATTCGAAGG
130705368 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130705406 AGACAGCCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:130710908 original size:39 final size:40
Alignment explanation
Indices: 130710692--130710898 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
130710682 GGATTGATAC
* *
130710692 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
130710732 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
130710771 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
130710811 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
130710851 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
130710891 CC-GGCTAA
1 CCGGGCTAA
130710899 ACTCCGAAGG
Statistics
Matches: 156, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 43 0.28
40 113 0.72
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:130716462 original size:43 final size:42
Alignment explanation
Indices: 130716314--130716535 Score: 277
Period size: 42 Copynumber: 5.2 Consensus size: 42
130716304 TTTTTAAAAA
130716314 GTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAG
* * * * *
130716357 GT-TTGTTCTATAGTGGCATTTGTGGCAAAAGCGCCACTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAG
*
130716399 GT-ATGTTCTTTAGCGGCGTTTGTAGGAAAAGCACCGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAG
* *
130716441 GTCATGTTCTTTAGCGGCGTTTATGGGAAAAGTGCCGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAG
* * ***
130716484 GTCATGTTCTATAGCGGCGTTTGTGGTAAAGCATTGCTAAAG
1 GTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAG
130716526 GTCATGTTCT
1 GTCATGTTCT
130716536 GTAACACCCC
Statistics
Matches: 154, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 91 0.59
43 62 0.40
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
GTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAG
Found at i:130716515 original size:85 final size:85
Alignment explanation
Indices: 130716314--130716535 Score: 295
Period size: 85 Copynumber: 2.6 Consensus size: 85
130716304 TTTTTAAAAA
* * *
130716314 GTCATGTTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGT-TTGTTCTATAGTGGCATTT
1 GTCATGTTCTTTAGCGGCGTTTGTG-GAAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTT
*
130716378 GTGGCAAAAGCGCCACTAAAG
65 ATGGCAAAAGCGCCACTAAAG
* *
130716399 GT-ATGTTCTTTAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCGTTT
1 GTCATGTTCTTTAGCGGCGTTTGT-GGAAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTT
* * *
130716463 ATGGGAAAAGTGCCGCTAAAG
65 ATGGCAAAAGCGCCACTAAAG
* * **
130716484 GTCATGTTCTATAGCGGCGTTTGTGGTAAAGCATTGCTAAAGGTCATGTTCT
1 GTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCACCGCTAAAGGTCATGTTCT
130716536 GTAACACCCC
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
84 39 0.32
85 62 0.51
86 20 0.17
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (85 bp):
GTCATGTTCTTTAGCGGCGTTTGTGGAAAAGCACCGCTAAAGGTCATGTTCTATAGCGGCATTTA
TGGCAAAAGCGCCACTAAAG
Found at i:130723379 original size:47 final size:47
Alignment explanation
Indices: 130723325--130723750 Score: 647
Period size: 47 Copynumber: 9.1 Consensus size: 47
130723315 TTAGGATTTT
** * * *
130723325 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
130723372 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
130723419 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
130723466 ATGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
130723513 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
130723560 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
130723607 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
130723654 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
130723701 ATGTGATGAATGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
130723748 ATG
1 ATG
130723751 CGAAATGTGT
Statistics
Matches: 360, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 357 0.99
48 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:130723472 original size:22 final size:22
Alignment explanation
Indices: 130723401--130723472 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
130723391 GCATATATGA
130723401 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
130723423 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
130723448 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
130723470 GAT
1 GAT
130723473 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:130723780 original size:46 final size:46
Alignment explanation
Indices: 130723724--130723860 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
130723714 GGAAGTGTAT
130723724 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
130723770 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
130723816 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
130723861 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:130727900 original size:21 final size:22
Alignment explanation
Indices: 130727874--130727926 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
130727864 AGGTTTACAC
130727874 GCCCATGTGA-AGGCCACACAT
1 GCCCATGTGAGAGGCCACACAT
**
130727895 GCCCATGT-AGAGGGGACACAT
1 GCCCATGTGAGAGGCCACACAT
*
130727916 GCCCTTGTGAG
1 GCCCATGTGAG
130727927 CAACCCGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.17
Consensus pattern (22 bp):
GCCCATGTGAGAGGCCACACAT
Found at i:130728059 original size:35 final size:33
Alignment explanation
Indices: 130727985--130728060 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 33
130727975 ACGACACGGC
* ** *
130727985 CATATGGAGATCTCACACGTTCTTGTGGCCAGA
1 CATATGGAGATCACACACGCCCGTGTGGCCAGA
130728018 CTATATGGAGATCACACACTGCCCGTGTGGCCAGA
1 C-ATATGGAGATCACACAC-GCCCGTGTGGCCAGA
130728053 TCATATGG
1 -CATATGG
130728061 CATTAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 1 0.03
34 16 0.44
35 18 0.50
36 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (33 bp):
CATATGGAGATCACACACGCCCGTGTGGCCAGA
Found at i:130730165 original size:95 final size:95
Alignment explanation
Indices: 130729995--130730168 Score: 269
Period size: 94 Copynumber: 1.8 Consensus size: 95
130729985 AATATTTCTT
* * *
130729995 ACTATTTCTAGAAAAGAACCAGACCAGTTGTTGCCTTGCTGATGATAATAACATAGAAAACAAAA
1 ACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTGCTGATGATAATAACATAGAAAACAAAA
*
130730060 AACGAGCAACTTGTTTCCTTCATGTTTTTA
66 AACAAGCAACTTGTTTCCTTCATGTTTTTA
* *
130730090 ACTATTTATAGAAAAGAACCAGA-CAATTTTTGTATTGCTGATGATAATAACATAGAAAACAAAA
1 ACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTGCTGATGATAATAACATAGAAAACAAAA
*
130730154 AACCAATCAACTTGT
66 AA-CAAGCAACTTGT
130730169 GAAAACCTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
94 39 0.55
95 32 0.45
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.29
Consensus pattern (95 bp):
ACTATTTATAGAAAAGAACCAGACCAATTGTTGCATTGCTGATGATAATAACATAGAAAACAAAA
AACAAGCAACTTGTTTCCTTCATGTTTTTA
Found at i:130730563 original size:19 final size:18
Alignment explanation
Indices: 130730534--130730569 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
130730524 AAGTTGGTTA
130730534 CATTATTTTATTTAATTC
1 CATTATTTTATTTAATTC
130730552 CATTAGTTTTATTTAATT
1 CATTA-TTTTATTTAATT
130730570 TAGTTCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (18 bp):
CATTATTTTATTTAATTC
Found at i:130731481 original size:23 final size:23
Alignment explanation
Indices: 130731451--130731496 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
130731441 GGTAGGAGAG
130731451 CTATTAGCACCATAGAACTTGAT
1 CTATTAGCACCATAGAACTTGAT
130731474 CTATTAGCACCATAGAACTTGAT
1 CTATTAGCACCATAGAACTTGAT
130731497 GCAATCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (23 bp):
CTATTAGCACCATAGAACTTGAT
Found at i:130737273 original size:39 final size:39
Alignment explanation
Indices: 130737219--130737416 Score: 360
Period size: 39 Copynumber: 5.1 Consensus size: 39
130737209 GAAATGTGTA
*
130737219 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
130737258 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
130737297 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
130737336 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* *
130737375 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
130737414 TGG
1 TGG
130737417 TAATAAAATT
Statistics
Matches: 154, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 154 1.00
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:130740596 original size:26 final size:26
Alignment explanation
Indices: 130740560--130740609 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
130740550 AGTTGAGTTG
130740560 TCCAAAATCACATATATGATTATGAA
1 TCCAAAATCACATATATGATTATGAA
*
130740586 TCCAAAATCACATATATGGTTATG
1 TCCAAAATCACATATATGATTATG
130740610 TATATGTCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (26 bp):
TCCAAAATCACATATATGATTATGAA
Found at i:130743954 original size:40 final size:40
Alignment explanation
Indices: 130743877--130744100 Score: 299
Period size: 40 Copynumber: 5.5 Consensus size: 40
130743867 ACCCAAGTAT
* * * *
130743877 CTTCGGGATTTAG-CTGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
130743916 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
130743956 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
130743996 CTTTGGGACTTAGCCCGGGTATAG-CAACTACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
130744039 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
130744079 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
130744101 CATCCGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 12 0.07
40 117 0.72
43 34 0.21
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:130744060 original size:83 final size:80
Alignment explanation
Indices: 130743877--130744100 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
130743867 ACCCAAGTAT
* * * *
130743877 CTTCGGGATTTAG-CTGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
130743941 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
130743956 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
130744020 CAACTACTCGTACAAATGC
66 C-ACTA---GCACAAATGC
*
130744039 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
130744101 CATCCGAATA
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
83 66 0.52
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:130746068 original size:38 final size:39
Alignment explanation
Indices: 130745972--130746122 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
130745962 AATGTTCGAG
130745972 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
130746011 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
130746050 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
130746088 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
130746123 GGTTACCATA
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:130746068 original size:77 final size:79
Alignment explanation
Indices: 130745972--130746122 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
130745962 AATGTTCGAG
130745972 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
130746036 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * *
130746050 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
*
130746114 ATTTGTGCG
66 AATTGTGCG
130746123 GGTTACCATA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:130746138 original size:40 final size:39
Alignment explanation
Indices: 130745972--130746152 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
130745962 AATGTTCGAG
*
130745972 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
130746011 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
130746050 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
130746088 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
** *
130746128 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
130746153 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.28
39 52 0.41
40 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:130760883 original size:40 final size:40
Alignment explanation
Indices: 130760828--130761037 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
130760818 AACATTGGAA
130760828 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
130760868 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
130760908 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
130760948 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
130760987 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
130761028 CTATATCCGG
1 ATATATCCGG
130761038 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:130763684 original size:37 final size:37
Alignment explanation
Indices: 130763637--130763739 Score: 98
Period size: 47 Copynumber: 2.5 Consensus size: 37
130763627 GCATTGGCAC
*
130763637 TAAGACAAGGATACTATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACTATGTTTGGAACATGGCATTTGG
130763674 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATA-C---T------ATGTTTGGAACATGGCATTTGG
*
130763721 TAAGATAAGGATATTATGT
1 TAAGATAAGGATACTATGT
130763740 AAGACCATGC
Statistics
Matches: 54, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
37 16 0.30
38 1 0.02
41 1 0.02
43 1 0.02
47 35 0.65
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (37 bp):
TAAGATAAGGATACTATGTTTGGAACATGGCATTTGG
Found at i:130763721 original size:47 final size:47
Alignment explanation
Indices: 130763652--130763748 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
130763642 CAAGGATACT
130763652 ATGTTTGGAACATGGCATTTGGTAAGATAAGGATACCATGTAAGACC
1 ATGTTTGGAACATGGCATTTGGTAAGATAAGGATACCATGTAAGACC
**
130763699 ATGTTTGGAACATGGCATTTGGTAAGATAAGGATATTATGTAAGACC
1 ATGTTTGGAACATGGCATTTGGTAAGATAAGGATACCATGTAAGACC
130763746 ATG
1 ATG
130763749 CCAAGGCATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (47 bp):
ATGTTTGGAACATGGCATTTGGTAAGATAAGGATACCATGTAAGACC
Found at i:130763856 original size:55 final size:53
Alignment explanation
Indices: 130763736--130763923 Score: 209
Period size: 55 Copynumber: 3.5 Consensus size: 53
130763726 TAAGGATATT
* * * ** *
130763736 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATC
1 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGG-AAAGGTACC
* *
130763790 ATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGAAAAGGTCCC
1 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-AAAGGTACC
* * *
130763845 ATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACC
1 ATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTCTATAAGGAAAGG-TACC
*
130763898 ACGTAAGACCATGTCAAGACATGGCA
1 ATGTAAGACCATGTCAAGACATGGCA
130763924 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.04
53 31 0.27
54 35 0.31
55 44 0.39
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGAAAGGTACC
Found at i:130763909 original size:53 final size:54
Alignment explanation
Indices: 130763727--130763934 Score: 215
Period size: 54 Copynumber: 3.9 Consensus size: 54
130763717 TTGGTAAGAT
** * *
130763727 AAGGATATTATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * *
130763781 AAAGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * *
130763837 AAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTCTATAAGGC
* * *
130763889 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
130763935 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 41 0.32
55 40 0.31
56 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:130763935 original size:53 final size:54
Alignment explanation
Indices: 130763727--130763934 Score: 199
Period size: 53 Copynumber: 3.9 Consensus size: 54
130763717 TTGGTAAGAT
** * * *
130763727 AAGGATATTATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTCTATAAGGC
* * * * *
130763781 AAAGAAATCATGTAAGACCATGTCAAGACATGG-AATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGATAAGTT-CTATAAGG-C
* * * * *
130763837 AAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATGATAAGTTCTATAAGGC
* *
130763889 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTC
130763935 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 39 0.31
55 38 0.30
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTCTATAAGGC
Found at i:130763953 original size:108 final size:109
Alignment explanation
Indices: 130763736--130763946 Score: 293
Period size: 108 Copynumber: 2.0 Consensus size: 109
130763726 TAAGGATATT
* *
130763736 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAATCATGTAAGACCA
1 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACGTAAGACCA
* * *
130763801 TGTCAAGACATGGAATTGATGAGTTACTATAAGGAAAAGGTCCC
66 TGTCAAGACATGGAATTGATAAGTTACAAAAAGGAAAAGGTCCC
* * * * *
130763845 ATGTAAGACCATGCTAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACCA
1 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACGTAAGACCA
*
130763909 TGTCAAGACATGGCAA-TGGTAAGTT-CAAAAAGGAAAAG
66 TGTCAAGACATGG-AATTGATAAGTTACAAAAAGGAAAAG
130763947 ATTCCCAAGT
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 11 0.12
108 43 0.48
109 36 0.40
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (109 bp):
ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAACCACGTAAGACCA
TGTCAAGACATGGAATTGATAAGTTACAAAAAGGAAAAGGTCCC
Found at i:130769067 original size:30 final size:30
Alignment explanation
Indices: 130769019--130769080 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
130769009 TTTTTTAGCC
*
130769019 TAGGGGCAAAATCATAATTCTG-CAAAGGTT
1 TAGGGCCAAAATCATAATTCTGCCAAA-GTT
** *
130769049 TAGGGCCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGCCAAAATCATAATTCTGCCAAAGTT
130769079 TA
1 TA
130769081 AGTTAGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (30 bp):
TAGGGCCAAAATCATAATTCTGCCAAAGTT
Found at i:130770306 original size:31 final size:31
Alignment explanation
Indices: 130770271--130770334 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
130770261 CCTTTTCATA
*
130770271 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
130770302 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
130770333 TT
1 TT
130770335 ACGGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:130770580 original size:24 final size:24
Alignment explanation
Indices: 130770528--130770622 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
130770518 GCTTTATCAT
*
130770528 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
130770553 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
130770577 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
130770600 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
130770623 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 22 0.35
24 29 0.46
25 12 0.19
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:130770604 original size:47 final size:49
Alignment explanation
Indices: 130770527--130770623 Score: 146
Period size: 47 Copynumber: 2.0 Consensus size: 49
130770517 TGCTTTATCA
*
130770527 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
*
130770576 TATAACTGG-GGCATAAGCC-C-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
130770623 T
1 T
130770624 CACTTCCTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 27 0.60
48 5 0.11
49 13 0.29
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (49 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
Found at i:130770607 original size:23 final size:23
Alignment explanation
Indices: 130770549--130770621 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
130770539 CCTAGCCTCT
*
130770549 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
130770572 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
130770596 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
130770619 TTT
1 TTT
130770622 TTCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 25 0.54
24 21 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:130770695 original size:9 final size:9
Alignment explanation
Indices: 130770681--130770737 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
130770671 ATCTCGTGTG
130770681 CATATCATA
1 CATATCATA
*
130770690 CATATCATGTG
1 CATATCA--TA
130770701 CATATCATA
1 CATATCATA
* *
130770710 CATGTCATGTG
1 CATATCA--TA
130770721 CATATCATA
1 CATATCATA
130770730 CATATCAT
1 CATATCAT
130770738 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:130770700 original size:20 final size:20
Alignment explanation
Indices: 130770677--130770739 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
130770667 GAACATCTCG
130770677 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
130770697 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
130770717 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
130770737 TGT
1 TGT
130770740 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:130770804 original size:25 final size:25
Alignment explanation
Indices: 130770776--130770823 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
130770766 ATATATAAAC
* *
130770776 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
130770801 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
130770824 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:130772045 original size:27 final size:27
Alignment explanation
Indices: 130771983--130772060 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
130771973 GGGCATATTC
*
130771983 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCTTACAGGGGTATTACG
*
130772010 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTACCTTACAGGGG-TATTACG
* **
130772037 GTCTTTTTACCTTTTAGGGGTATT
1 GTCATTTTACCTTACAGGGGTATT
130772061 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTATTACG
Found at i:130772265 original size:26 final size:26
Alignment explanation
Indices: 130772191--130772315 Score: 142
Period size: 27 Copynumber: 4.7 Consensus size: 26
130772181 TGTAAATCAG
* *
130772191 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTA-TTTGGTAATTTTACAAACTAA
* *
130772218 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTT-GGTAATTTTACAAACTAA
** *
130772245 TAGTATTTGGTAATTTTACAAACTAG
1 GGGTATTTGGTAATTTTACAAACTAA
130772271 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTA-TTTGGTAATTTTACAAACTAA
*
130772298 GGGTATTTTAGTAATTTT
1 GGGTA-TTTGGTAATTTT
130772316 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 21 0.25
27 62 0.75
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAACTAA
Found at i:130772304 original size:53 final size:54
Alignment explanation
Indices: 130772191--130772329 Score: 165
Period size: 53 Copynumber: 2.6 Consensus size: 54
130772181 TGTAAATCAG
*
130772191 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAA
** * * *
130772245 TAGTA-TTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAA
* ** *
130772298 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTA
130772330 AAACAATAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
53 46 0.66
54 24 0.34
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:130772327 original size:27 final size:27
Alignment explanation
Indices: 130772099--130772329 Score: 121
Period size: 27 Copynumber: 8.5 Consensus size: 27
130772089 TGGTAAATCA
* * *
130772099 ACAAACCAAAGGTATTTCAGTAATTTT
1 ACAAATCAAGGGTATTTTAGTAATTTT
** * *
130772126 GTAAACCAATGGTATTTCTA-TAATTTTT
1 ACAAATCAAGGGTATTT-TAGTAA-TTTT
* * *
130772154 AGAAAGTCAAGGGTATTTCTA-TAACTCT
1 ACAAA-TCAAGGGTATTT-TAGTAATTTT
** * *
130772182 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAATCAAGGGTATTTTAGTAATTTT
** ** *
130772209 ACAAATTGAGGGTATTTCGGTAATTTC
1 ACAAATCAAGGGTATTTTAGTAATTTT
* ** *
130772236 ACAAACCAATAGTA-TTTGGTAATTTT
1 ACAAATCAAGGGTATTTTAGTAATTTT
* *
130772262 ACAAA-CTAGGGGTATTTTGGTAATTTT
1 ACAAATC-AAGGGTATTTTAGTAATTTT
130772289 ACAAA-CTAAGGGTATTTTAGTAATTTT
1 ACAAATC-AAGGGTATTTTAGTAATTTT
** *
130772316 GTAAATCGAGGGTA
1 ACAAATCAAGGGTA
130772330 AAACAATAAT
Statistics
Matches: 159, Mismatches: 38, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
25 1 0.01
26 20 0.13
27 108 0.68
28 14 0.09
29 16 0.10
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
ACAAATCAAGGGTATTTTAGTAATTTT
Found at i:130772339 original size:27 final size:27
Alignment explanation
Indices: 130772308--130772598 Score: 295
Period size: 27 Copynumber: 10.8 Consensus size: 27
130772298 GGGTATTTTA
* *
130772308 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAACG
* * * **
130772335 ATAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTATGTAAATCGAGGGTAAAACG
* * * *
130772362 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAACG
130772389 GTAATTCA-GTAAATCGAGGGTAAAACG
1 GTAATT-ATGTAAATCGAGGGTAAAACG
* * **
130772416 GTAATTCTGTAAGTCGAGGGTAAAATA
1 GTAATTATGTAAATCGAGGGTAAAACG
*
130772443 ATAATTATGTAAATCG-GGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
*
130772469 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* * *
130772496 GTAATTTTGTGAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
*
130772523 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
*
130772550 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* *
130772577 GTAATTTTGTAAATCGGGGGTA
1 GTAATTATGTAAATCGAGGGTA
130772599 CTTTGGTAAT
Statistics
Matches: 222, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.10
27 199 0.90
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTATGTAAATCGAGGGTAAAACG
Found at i:130772609 original size:81 final size:81
Alignment explanation
Indices: 130772308--130772598 Score: 349
Period size: 81 Copynumber: 3.6 Consensus size: 81
130772298 GGGTATTTTA
* * ** * * * * *
130772308 GTAATTTTGTAAA-TCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAAT-AGTAATTCTA
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAATGA-TAATTATG
* *
130772371 TAAATCAAGGGTAAAACA
64 TAAATCAGGGGTAAAACG
* * *
130772389 GTAATTCA-GTAAA-TCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATAATAATTATG
1 GTAATT-ATGTAAATTAG-GGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAATGATAATTATG
130772452 TAAATC-GGGGTAAAACG
64 TAAATCAGGGGTAAAACG
* *
130772469 GTAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTGAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAATGATAATTATGTA
130772534 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* *
130772550 GTAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTAAATCGGGGGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTAAGTCGAGGGTA
130772599 CTTTGGTAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 68 0.36
81 118 0.63
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (81 bp):
GTAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAATGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:130772625 original size:27 final size:27
Alignment explanation
Indices: 130772575--130772693 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
130772565 AGGGGTAAAA
** **
130772575 CGGTAATTTTGTAAATCGGGGGTACTTT
1 CGGTAATTTTACAAATCGAAGGTA-TTT
*
130772603 -GGTAATTTTACAAGTCGAAGGTATTT
1 CGGTAATTTTACAAATCGAAGGTATTT
* * *
130772629 GGGTAAATTTACAAATCGAGGGTATTT
1 CGGTAATTTTACAAATCGAAGGTATTT
* * *
130772656 CAGTATTTTTACAAA-CTAAGGGTATTT
1 CGGTAATTTTACAAATCGAA-GGTATTT
130772683 CGGTAATTTTA
1 CGGTAATTTTA
130772694 GTAAACTAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
26 5 0.07
27 68 0.93
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTACAAATCGAAGGTATTT
Found at i:130772634 original size:54 final size:54
Alignment explanation
Indices: 130772575--130772698 Score: 126
Period size: 54 Copynumber: 2.3 Consensus size: 54
130772565 AGGGGTAAAA
* * *
130772575 CGGTAATTTTGTAAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTT
1 CGGTAATTTTGTAAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTT
* * ** * *
130772629 GGGTAAATTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTT
1 CGGTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTT
130772683 CGGTAATTTTAGTAAA
1 CGGTAATTTT-GTAAA
130772699 CTAAAGTATT
Statistics
Matches: 54, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
53 6 0.11
54 45 0.83
55 3 0.06
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.38
Consensus pattern (54 bp):
CGGTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTT
Found at i:130772707 original size:27 final size:27
Alignment explanation
Indices: 130772650--130772708 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
130772640 CAAATCGAGG
* *
130772650 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGA
* *
130772677 GTATTTCGGTAATTTTAGTAAACTAA-A
1 GTATTTCAGTAATTTTA-CAAACTAAGA
130772704 GTATT
1 GTATT
130772709 CTAAACAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.42
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGA
Found at i:130774043 original size:47 final size:47
Alignment explanation
Indices: 130773986--130774085 Score: 164
Period size: 47 Copynumber: 2.1 Consensus size: 47
130773976 AGACAAGGAT
* *
130773986 ACCATATTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAAGATACCATGTAAG
* *
130774033 ACCATGTTTGGAACATGGCATTTGGTAAGATAAAGATATCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAAGATACCATGTAAG
130774080 ACCATG
1 ACCATG
130774086 CCAAGGCATG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (47 bp):
ACCATGTTTGGAACATGGCATTTGGTAAGACAAAGATACCATGTAAG
Found at i:130774193 original size:55 final size:54
Alignment explanation
Indices: 130774067--130774260 Score: 239
Period size: 54 Copynumber: 3.6 Consensus size: 54
130774057 GTAAGATAAA
* * *
130774067 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * * **
130774121 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAAGAAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTAT-AAGGCAAG
* * *
130774177 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* *
130774229 GATACCACGTAAGACCATGTCAAGACATGGCA
1 GATACCATGTAAGACCATGCCAAGACATGGCA
130774261 ATGGTAAGTT
Statistics
Matches: 119, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 7 0.06
53 28 0.24
54 39 0.33
55 38 0.32
56 7 0.06
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Done.