Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 428 of 770
Found at i:131972082 original size:80 final size:79
Alignment explanation
Indices: 131971932--131972098 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
131971922 CGGAATATAA
* *
131971932 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
131971997 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
131972012 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
131972074 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
131972091 CCGGATAT
1 CCGGATAT
131972099 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:131972947 original size:17 final size:19
Alignment explanation
Indices: 131972924--131972969 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
131972914 AAGAAGCATG
131972924 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
131972942 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
131972960 AATCATGCTC
1 AATCATGCTC
131972970 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:131978200 original size:13 final size:13
Alignment explanation
Indices: 131978182--131978208 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
131978172 GAATCCCACA
131978182 CACTCGTGTGGAC
1 CACTCGTGTGGAC
131978195 CACTCGTGTGGAC
1 CACTCGTGTGGAC
131978208 C
1 C
131978209 CACACGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CACTCGTGTGGAC
Found at i:131979359 original size:16 final size:17
Alignment explanation
Indices: 131979340--131979376 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
131979330 ATGTGAATAA
131979340 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
131979356 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
131979372 TATTA
1 TATTA
131979377 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:131979426 original size:22 final size:22
Alignment explanation
Indices: 131979400--131979443 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
131979390 GTATTAAATA
131979400 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAATAAATTAT
* * *
131979422 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAAATTAT
131979444 TATATGACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTATTAAAATAATAAATTAT
Found at i:131979630 original size:26 final size:24
Alignment explanation
Indices: 131979576--131979624 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
131979566 TTGATTTAAG
131979576 TTAATTTTTATATAAAAATAAAAT
1 TTAATTTTTATATAAAAATAAAAT
131979600 TTAATTTTTATATAAAAATAAAAT
1 TTAATTTTTATATAAAAATAAAAT
131979624 T
1 T
131979625 ATTAATAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TTAATTTTTATATAAAAATAAAAT
Found at i:131982534 original size:40 final size:40
Alignment explanation
Indices: 131982479--131982558 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
131982469 CATTTAGAAT
131982479 ACCGTTAGATACCCGGGATAGCTCACACATAGTGTGCTAA
1 ACCGTTAGATACCCGGGATAGCTCACACATAGTGTGCTAA
*
131982519 ACCGTTAGATACCCGGGATATCTCACACATAGTGTGCTAA
1 ACCGTTAGATACCCGGGATAGCTCACACATAGTGTGCTAA
131982559 CTCATATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
ACCGTTAGATACCCGGGATAGCTCACACATAGTGTGCTAA
Found at i:131982619 original size:25 final size:25
Alignment explanation
Indices: 131982591--131982639 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
131982581 ATTCCTGTAC
* *
131982591 AAGTATTCTCACATGAGCTGTGAAT
1 AAGTATGCTCACACGAGCTGTGAAT
131982616 AAGTATGCTCACACGAGCTGTGAA
1 AAGTATGCTCACACGAGCTGTGAA
131982640 AATGGGCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (25 bp):
AAGTATGCTCACACGAGCTGTGAAT
Found at i:131985988 original size:62 final size:60
Alignment explanation
Indices: 131985849--131985989 Score: 158
Period size: 62 Copynumber: 2.3 Consensus size: 60
131985839 ATCACTAACA
* * * ** * *
131985849 AAATCAAAAACCCTAAACTAAAAAACCTAAAAACCAAAATGTCATTTTCTTTTTAGTATC
1 AAATCAAAAACCCTAAACAAAAAAAACTAAAAACCAAAATGTCATATTCTAATTAATAGC
* *
131985909 ACAATCGAAAACCCTAAACAAAAAAAACTAAAATACCCAAAAT-TCCTATTCTAATTAATAGC
1 A-AATCAAAAACCCTAAACAAAAAAAACTAAAA-A-CCAAAATGTCATATTCTAATTAATAGC
131985971 TAAATCAAAAACCCTAAAC
1 -AAATCAAAAACCCTAAAC
131985990 CAATATCTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
60 1 0.01
61 28 0.42
62 30 0.45
63 8 0.12
ACGTcount: A:0.52, C:0.22, G:0.03, T:0.23
Consensus pattern (60 bp):
AAATCAAAAACCCTAAACAAAAAAAACTAAAAACCAAAATGTCATATTCTAATTAATAGC
Found at i:131986041 original size:30 final size:29
Alignment explanation
Indices: 131985972--131986092 Score: 75
Period size: 30 Copynumber: 4.1 Consensus size: 29
131985962 ATTAATAGCT
* * * **
131985972 AAATCAAAAACCCTAAACCAATATCTTAA
1 AAATCAAAAACCATAAACAAAAATCCAAA
*
131986001 AAATAAAAAAACCATAAACAAAAATTCCAAA
1 AAAT-CAAAAACCATAAACAAAAA-TCCAAA
*** **
131986032 AAATCAAAAA-CACTAAGTGAAAATCCTTA
1 AAATCAAAAACCA-TAAACAAAAATCCAAA
* * *
131986061 AAATC-AAAACCATAAGCCAAAATCCCAA
1 AAATCAAAAACCATAAACAAAAATCCAAA
131986089 AAAT
1 AAAT
131986093 TAGAAACCCT
Statistics
Matches: 72, Mismatches: 16, Indels: 9
0.74 0.16 0.09
Matches are distributed among these distances:
28 20 0.28
29 17 0.24
30 27 0.38
31 8 0.11
ACGTcount: A:0.60, C:0.21, G:0.02, T:0.17
Consensus pattern (29 bp):
AAATCAAAAACCATAAACAAAAATCCAAA
Found at i:131986082 original size:28 final size:28
Alignment explanation
Indices: 131986008--131986092 Score: 80
Period size: 29 Copynumber: 3.0 Consensus size: 28
131985998 TAAAAATAAA
*
131986008 AAAACCATAAACAAAAATTCCAAAAAATC
1 AAAACCATAAGCAAAAA-TCCAAAAAATC
* ** **
131986037 AAAAACACTAAGTGAAAATCCTTAAAATC
1 AAAACCA-TAAGCAAAAATCCAAAAAATC
* *
131986066 AAAACCATAAGCCAAAATCCCAAAAAT
1 AAAACCATAAGCAAAAATCCAAAAAAT
131986093 TAGAAACCCT
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
28 16 0.36
29 21 0.48
30 7 0.16
ACGTcount: A:0.60, C:0.21, G:0.04, T:0.15
Consensus pattern (28 bp):
AAAACCATAAGCAAAAATCCAAAAAATC
Found at i:131986146 original size:29 final size:28
Alignment explanation
Indices: 131986096--131986155 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 28
131986086 CAAAAATTAG
*
131986096 AAACCCTAAATTTGACAACCCTAAACCA
1 AAACCCTAAATTTGAAAACCCTAAACCA
131986124 AAACCCATACAATTT-AAAACCCTAAACCA
1 AAACCC-TA-AATTTGAAAACCCTAAACCA
131986153 AAA
1 AAA
131986156 TCAAAATAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 6 0.21
29 18 0.62
30 5 0.17
ACGTcount: A:0.52, C:0.30, G:0.02, T:0.17
Consensus pattern (28 bp):
AAACCCTAAATTTGAAAACCCTAAACCA
Found at i:131986840 original size:24 final size:24
Alignment explanation
Indices: 131986796--131986841 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
131986786 TAATATTTCA
* *
131986796 TATTTGATTATTATTTTTCATTCT
1 TATTTCATTATTATTTATCATTCT
131986820 TATTTCATTA-TATGTTATCATT
1 TATTTCATTATTAT-TTATCATT
131986842 ATTTTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63
Consensus pattern (24 bp):
TATTTCATTATTATTTATCATTCT
Found at i:131989596 original size:13 final size:13
Alignment explanation
Indices: 131989578--131989627 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
131989568 CAAAGGAAAG
131989578 AAAGA-AAAAGAGA
1 AAAGAGAAAAGA-A
*
131989591 AAAGAAAGAAAGAA
1 AAAGAGA-AAAGAA
131989605 AAAGAGAAAAGAA
1 AAAGAGAAAAGAA
*
131989618 AGA-AGAAAAG
1 AAAGAGAAAAG
131989628 GGAAAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
12 7 0.21
13 13 0.39
14 8 0.24
15 5 0.15
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAAGAGAAAAGAA
Found at i:131989597 original size:21 final size:21
Alignment explanation
Indices: 131989573--131989626 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
131989563 GAAGGCAAAG
131989573 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
131989594 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
131989615 GAAAG-AAGAAAA
1 GAAAGAAAGAAAA
131989627 GGGAAAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 7 0.21
21 26 0.79
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:131990512 original size:20 final size:20
Alignment explanation
Indices: 131990487--131990538 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
131990477 GATATTCCGA
*
131990487 CTTTGTGTCGATAAGACACT
1 CTTTGTGTCGACAAGACACT
* *
131990507 CTTTGTGTTGACGAGACACT
1 CTTTGTGTCGACAAGACACT
*
131990527 ATTTGTGTCGAC
1 CTTTGTGTCGAC
131990539 TACTGTTACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (20 bp):
CTTTGTGTCGACAAGACACT
Found at i:131990863 original size:18 final size:17
Alignment explanation
Indices: 131990807--131990863 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
131990797 GACTGACTGC
*
131990807 TACTGAATAATTGATGT
1 TACTGAATAAATGATGT
* ** *
131990824 TAATGAATAAACAACTGA
1 TACTGAATAAATGA-TGT
131990842 TACTGAATAAATGATTGT
1 TACTGAATAAATGA-TGT
131990860 TACT
1 TACT
131990864 AATTAACCGA
Statistics
Matches: 29, Mismatches: 10, Indels: 1
0.73 0.25 0.03
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (17 bp):
TACTGAATAAATGATGT
Found at i:131994395 original size:19 final size:19
Alignment explanation
Indices: 131994351--131994412 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
131994341 ACCATGATTC
131994351 TAAAAAATAAAAAATATAAA
1 TAAAAAATAAAAAA-ATAAA
* * *
131994371 T-TAAAACAAAAAAATACA
1 TAAAAAATAAAAAAATAAA
* *
131994389 TAAAAAATATAAAAATATA
1 TAAAAAATAAAAAAATAAA
131994408 TAAAA
1 TAAAA
131994413 TATTCAAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 5 0.15
19 28 0.82
20 1 0.03
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (19 bp):
TAAAAAATAAAAAAATAAA
Found at i:131995513 original size:31 final size:30
Alignment explanation
Indices: 131995460--131995525 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
131995450 TAACTTATAT
*
131995460 TTTTATAATTTTTAAAGAATTAAATTAAAA
1 TTTTATAATTTTTAAAGAATTAAAGTAAAA
* *
131995490 TTTTATTATTTTT-AAGAAGATTAAAGTATAA
1 TTTTATAATTTTTAAAG-A-ATTAAAGTAAAA
131995521 TTTTA
1 TTTTA
131995526 ATTTTATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 3 0.10
30 13 0.42
31 15 0.48
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (30 bp):
TTTTATAATTTTTAAAGAATTAAAGTAAAA
Found at i:131997688 original size:17 final size:17
Alignment explanation
Indices: 131997662--131997704 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
131997652 ATTACAACCC
131997662 AAAAATTAAATAGTAATT
1 AAAAA-TAAATAGTAATT
131997680 AAAAATAAATAGTAATT
1 AAAAATAAATAGTAATT
131997697 AAAAATAA
1 AAAAATAA
131997705 CTTAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (17 bp):
AAAAATAAATAGTAATT
Found at i:131998333 original size:26 final size:26
Alignment explanation
Indices: 131998287--131998339 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
131998277 TCAAACATGC
*
131998287 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGAGGT
* *
131998313 ATTTCGGT-AATTTATCTCCTAGAGGT
1 ATTTAGGTCAATTTAAC-CCTAGAGGT
131998339 A
1 A
131998340 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGAGGT
Found at i:131998633 original size:8 final size:8
Alignment explanation
Indices: 131998619--131998654 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
131998609 AAAATACCGG
131998619 TTTTCGGC
1 TTTTCGGC
* *
131998627 ATTTCGGG
1 TTTTCGGC
131998635 TTTTCGGC
1 TTTTCGGC
131998643 TTTTCGGC
1 TTTTCGGC
131998651 TTTT
1 TTTT
131998655 GCCGATCTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.19, G:0.25, T:0.53
Consensus pattern (8 bp):
TTTTCGGC
Found at i:132003425 original size:18 final size:20
Alignment explanation
Indices: 132003391--132003441 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
132003381 AAAAATAAAA
*
132003391 TAAAA-TCACAATAATTT-T
1 TAAAATTCAAAATAATTTAT
132003409 TAAAATTCAAAAT-ATTTAT
1 TAAAATTCAAAATAATTTAT
*
132003428 AAAAATTTCAAAAT
1 TAAAA-TTCAAAAT
132003442 TTATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 9 0.32
19 11 0.39
20 8 0.29
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATTCAAAATAATTTAT
Found at i:132003443 original size:18 final size:18
Alignment explanation
Indices: 132003422--132003476 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
132003412 AATTCAAAAT
132003422 ATTTATAAAAATTTCAAA
1 ATTTATAAAAATTTCAAA
**** *
132003440 ATTTATATTTTTTTAAAA
1 ATTTATAAAAATTTCAAA
*
132003458 AATTATAAAAATTTCAAA
1 ATTTATAAAAATTTCAAA
132003476 A
1 A
132003477 CAATTCTAAA
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTATAAAAATTTCAAA
Found at i:132003723 original size:22 final size:22
Alignment explanation
Indices: 132003680--132003725 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
132003670 TGTAACAAGA
***
132003680 TTTTAATTTGACATGTTTAATT
1 TTTTAATTTGACATGAACAATT
*
132003702 TTTTAATTTGACTTGAACAATT
1 TTTTAATTTGACATGAACAATT
132003724 TT
1 TT
132003726 AGTCGATTCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.57
Consensus pattern (22 bp):
TTTTAATTTGACATGAACAATT
Found at i:132007165 original size:28 final size:28
Alignment explanation
Indices: 132007125--132007196 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
132007115 AAAATTGTAC
* *
132007125 AGCACTAAGTGTGCGAGCTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGC-TGAAATATAT
132007153 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
132007182 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
132007197 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:132015069 original size:28 final size:28
Alignment explanation
Indices: 132015029--132015100 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
132015019 AAAATTGTAC
* *
132015029 AGCACTAAGTGTGCGAGCTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGC-TGAAATATAT
132015057 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
132015086 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
132015101 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.45
29 20 0.50
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:132017306 original size:39 final size:39
Alignment explanation
Indices: 132017251--132017327 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
132017241 ATCATGATTC
* * *
132017251 CATAGCTTCTTGCAGCTATGGTCTTACTCATCTTAACCG
1 CATAGCATCTTGCAGCTACGATCTTACTCATCTTAACCG
* * *
132017290 CATAGCATCTTTCAGCTGCGATCTTACTCATTTTAACC
1 CATAGCATCTTGCAGCTACGATCTTACTCATCTTAACC
132017328 ATGATGTCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.36
Consensus pattern (39 bp):
CATAGCATCTTGCAGCTACGATCTTACTCATCTTAACCG
Found at i:132020774 original size:29 final size:29
Alignment explanation
Indices: 132020741--132020798 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
132020731 TCAACCGAAT
132020741 AACAAAGTAAAAAGGGAGAAACCATGGAA
1 AACAAAGTAAAAAGGGAGAAACCATGGAA
132020770 AACAAAGTAAAAAGGGAGAAACCATGGAA
1 AACAAAGTAAAAAGGGAGAAACCATGGAA
132020799 GCTTCATTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.10, G:0.24, T:0.07
Consensus pattern (29 bp):
AACAAAGTAAAAAGGGAGAAACCATGGAA
Found at i:132022141 original size:13 final size:13
Alignment explanation
Indices: 132022123--132022149 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
132022113 TTTCAAAAGC
132022123 TTAGTAAGTCATA
1 TTAGTAAGTCATA
132022136 TTAGTAAGTCATA
1 TTAGTAAGTCATA
132022149 T
1 T
132022150 ACAAATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (13 bp):
TTAGTAAGTCATA
Found at i:132022563 original size:42 final size:43
Alignment explanation
Indices: 132022463--132022634 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
132022453 AGTTCGTACA
* * *
132022463 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
132022506 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
* * *
132022548 ATGCCAACGTCCCAGACGTGATCTTACAGGTACATCATAAGT-T-G
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCA-AA-TATCG
* * * * *
132022592 ATGCTAACGTCCCAGATGTGGTCTTACATGAAAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
132022635 GATCCTATGT
Statistics
Matches: 106, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 29 0.27
43 44 0.42
44 30 0.28
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:132028569 original size:6 final size:6
Alignment explanation
Indices: 132028558--132028636 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
132028548 GGGATCACTA
132028558 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
132028601 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
132028637 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:132028580 original size:20 final size:21
Alignment explanation
Indices: 132028554--132028599 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
132028544 AGCCGGGATC
132028554 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
132028575 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
132028595 ACTAA
1 ACTAA
132028600 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:132028624 original size:11 final size:11
Alignment explanation
Indices: 132028554--132028600 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
132028544 AGCCGGGATC
132028554 ACTAA-CTAAT
1 ACTAATCTAAT
132028564 ACTAATCTAAT
1 ACTAATCTAAT
132028575 -CTAA-CTAAT
1 ACTAATCTAAT
132028584 ACTAATCTAAT
1 ACTAATCTAAT
132028595 ACTAAT
1 ACTAAT
132028601 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:132028650 original size:14 final size:14
Alignment explanation
Indices: 132028633--132028660 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
132028623 CTCTAATACT
132028633 AATAGAATAGAAAA
1 AATAGAATAGAAAA
132028647 AATAGAATAGAAAA
1 AATAGAATAGAAAA
132028661 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:132036983 original size:18 final size:18
Alignment explanation
Indices: 132036904--132036997 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
132036894 CAAGGTCACG
*
132036904 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
132036922 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
132036940 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
132036958 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
132036976 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
132036991 ATCAATA
1 ATCAATA
132036998 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:132036984 original size:9 final size:9
Alignment explanation
Indices: 132036904--132036984 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
132036894 CAAGGTCACG
*
132036904 ATCAATAGC
1 ATCAATATC
* *
132036913 GTCACTATC
1 ATCAATATC
*
132036922 ATCAATAGC
1 ATCAATATC
* * *
132036931 GTCACTAGC
1 ATCAATATC
132036940 ATCAATATC
1 ATCAATATC
* * *
132036949 GTCACTAGC
1 ATCAATATC
132036958 ATCAATATC
1 ATCAATATC
* *
132036967 GTCACTATC
1 ATCAATATC
132036976 ATCAATATC
1 ATCAATATC
132036985 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:132039393 original size:21 final size:21
Alignment explanation
Indices: 132039363--132039451 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
132039353 CTCACAAAGA
* *
132039363 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
132039383 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
132039404 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
132039425 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
132039449 AAA
1 AAA
132039452 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:132039444 original size:24 final size:21
Alignment explanation
Indices: 132039363--132039431 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
132039353 CTCACAAAGA
* * *
132039363 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
132039383 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
132039404 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
132039425 AAAAAGA
1 AAAAAGA
132039432 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:132043617 original size:14 final size:14
Alignment explanation
Indices: 132043598--132043626 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
132043588 TACAATATAT
132043598 ATAAGAATTATACG
1 ATAAGAATTATACG
132043612 ATAAGAATTATACG
1 ATAAGAATTATACG
132043626 A
1 A
132043627 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:132046418 original size:13 final size:15
Alignment explanation
Indices: 132046393--132046432 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
132046383 TATTTTATTA
132046393 AATAAATATTAAATT
1 AATAAATATTAAATT
132046408 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
132046421 AATAAATATTAA
1 AATAAATATTAA
132046433 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:132058182 original size:12 final size:12
Alignment explanation
Indices: 132058165--132058189 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
132058155 CAGAGGCTAT
132058165 TAACAATATTTA
1 TAACAATATTTA
132058177 TAACAATATTTA
1 TAACAATATTTA
132058189 T
1 T
132058190 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:132060744 original size:21 final size:20
Alignment explanation
Indices: 132060715--132060753 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
132060705 ACGCCTACGA
132060715 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
132060735 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
132060754 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:132060946 original size:15 final size:14
Alignment explanation
Indices: 132060925--132060960 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
132060915 TTATCATTTC
*
132060925 AATATATAATTTAA
1 AATATATAAATTAA
132060939 ATATATATAAATTAA
1 A-ATATATAAATTAA
132060954 AATATAT
1 AATATAT
132060961 TAATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATATATAAATTAA
Found at i:132060956 original size:16 final size:15
Alignment explanation
Indices: 132060926--132060964 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
132060916 TATCATTTCA
*
132060926 ATATATAATTTAAAT
1 ATATATAATTAAAAT
132060941 ATATATAAATTAAAAT
1 ATATAT-AATTAAAAT
132060957 ATAT-TAAT
1 ATATATAAT
132060965 AATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 7 0.32
16 12 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATATAATTAAAAT
Found at i:132060978 original size:24 final size:25
Alignment explanation
Indices: 132060941--132060994 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
132060931 TAATTTAAAT
132060941 ATATATAAATTAAA-ATATATTAATA
1 ATATATAAATTAAATA-ATATTAATA
*
132060966 ATATTTAAA-TAAATAATATTAATA
1 ATATATAAATTAAATAATATTAATA
132060990 ATATA
1 ATATA
132060995 GAAAGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATATATAAATTAAATAATATTAATA
Found at i:132069984 original size:17 final size:17
Alignment explanation
Indices: 132069964--132069997 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
132069954 TTCGTATATT
*
132069964 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
132069981 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
132069998 GCGAATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:132072873 original size:18 final size:18
Alignment explanation
Indices: 132072850--132072886 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
132072840 ATGAAGCTGG
* *
132072850 TTTATCTCATTTTTCCAC
1 TTTATCTAATTTATCCAC
132072868 TTTATCTAATTTATCCAC
1 TTTATCTAATTTATCCAC
132072886 T
1 T
132072887 GCGTCGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATCTAATTTATCCAC
Found at i:132074660 original size:20 final size:19
Alignment explanation
Indices: 132074590--132074673 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
132074580 ATAGATAAGA
132074590 AATAGATAAATAATATAA-A-
1 AATA-ATAAAT-ATATAATAG
*
132074609 AATAATACTAATATATATTAG
1 AATAATA--AATATATAATAG
132074630 AAT-AT--ATATATAATAG
1 AATAATAAATATATAATAG
132074646 AATAGATAAATATATAATAG
1 AATA-ATAAATATATAATAG
132074666 AATTAATA
1 AA-TAATA
132074674 TTCTAACATC
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
16 13 0.24
18 5 0.09
19 9 0.17
20 22 0.41
21 5 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (19 bp):
AATAATAAATATATAATAG
Found at i:132078108 original size:15 final size:15
Alignment explanation
Indices: 132078088--132078118 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
132078078 CTGTATCAGT
132078088 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
132078103 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
132078118 A
1 A
132078119 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:132082861 original size:18 final size:18
Alignment explanation
Indices: 132082838--132082880 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
132082828 TCCTTTCCCC
*
132082838 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
132082856 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
132082874 TGCTTTC
1 TTCTTTC
132082881 TTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:132083521 original size:15 final size:17
Alignment explanation
Indices: 132083501--132083532 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
132083491 ACGTTTCATT
132083501 TATATAA-T-CATAAAA
1 TATATAACTGCATAAAA
132083516 TATATAACTGCATAAAA
1 TATATAACTGCATAAAA
132083533 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAACTGCATAAAA
Found at i:132083689 original size:17 final size:17
Alignment explanation
Indices: 132083667--132083705 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
132083657 AATTTAGATG
*
132083667 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
132083684 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
132083701 TAAAA
1 TAAAA
132083706 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:132083788 original size:9 final size:9
Alignment explanation
Indices: 132083774--132083804 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
132083764 TATAAAAAAG
132083774 ATATTAAAT
1 ATATTAAAT
132083783 ATATTAAAT
1 ATATTAAAT
*
132083792 ATATAAAAT
1 ATATTAAAT
132083801 ATAT
1 ATAT
132083805 AGATAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATATTAAAT
Found at i:132083805 original size:9 final size:9
Alignment explanation
Indices: 132083763--132083805 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
132083753 TATAACTAAG
*
132083763 ATATAAAAA
1 ATATATAAA
* *
132083772 AGATATTAA
1 ATATATAAA
*
132083781 ATATATTAA
1 ATATATAAA
132083790 ATATATAAA
1 ATATATAAA
132083799 ATATATA
1 ATATATA
132083806 GATAAATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
ATATATAAA
Found at i:132083821 original size:19 final size:21
Alignment explanation
Indices: 132083787--132083830 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
132083777 TTAAATATAT
132083787 TAAATATATAAAATATATAGA
1 TAAATATATAAAATATATAGA
*
132083808 TAAATA-AT-AAATATATATA
1 TAAATATATAAAATATATAGA
132083827 TAAA
1 TAAA
132083831 ATTTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 2 0.09
21 6 0.27
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
TAAATATATAAAATATATAGA
Found at i:132084007 original size:13 final size:13
Alignment explanation
Indices: 132083991--132084017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
132083981 TTCGAGTCTC
132083991 TAATTCATATTAA
1 TAATTCATATTAA
132084004 TAATTCATATTAA
1 TAATTCATATTAA
132084017 T
1 T
132084018 TATGAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTCATATTAA
Found at i:132084438 original size:22 final size:21
Alignment explanation
Indices: 132084404--132084457 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
132084394 TTTATTTATC
132084404 TATTTA-ATATTATATTCAATT
1 TATTTATATATTATA-TCAATT
*
132084425 TATTTATATATTATATCTATT
1 TATTTATATATTATATCAATT
132084446 T-TATTATATATT
1 TAT-TTATATATT
132084458 CTAAATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 21 0.70
22 8 0.27
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTTATATATTATATCAATT
Found at i:132084456 original size:38 final size:37
Alignment explanation
Indices: 132084396--132084540 Score: 105
Period size: 38 Copynumber: 4.0 Consensus size: 37
132084386 TGGTTTAATT
*
132084396 TATT-TATCTATTTAATATTATATTCAATTTATTTATA
1 TATTATATCTATTTTATA-TATATTCAATTTATTTATA
*
132084433 TATTATATCTATTTTATTATATATTCTAA-ATATTT-TA
1 TATTATATCTATTTTA-TATATATTC-AATTTATTTATA
*
132084470 TATCTA-A-ATATTTTATATAT-TT---TTATATTTATA
1 TAT-TATATCTATTTTATATATATTCAATT-TATTTATA
132084503 TATTATAT-TATTTTTATATTATATAT-ATATTTATTTAT
1 TATTATATCTA-TTTTATA-TATAT-TCA-ATTTATTTAT
132084541 TTTTTGTATA
Statistics
Matches: 88, Mismatches: 4, Indels: 30
0.72 0.03 0.25
Matches are distributed among these distances:
32 7 0.08
33 8 0.09
34 9 0.10
35 8 0.09
36 8 0.09
37 11 0.12
38 24 0.27
39 11 0.12
40 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (37 bp):
TATTATATCTATTTTATATATATTCAATTTATTTATA
Found at i:132084466 original size:16 final size:16
Alignment explanation
Indices: 132084447--132084487 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
132084437 ATATCTATTT
*
132084447 TATTATATATTCTAAA
1 TATTTTATATTCTAAA
132084463 TATTTTATA-TCTAAA
1 TATTTTATATTCTAAA
132084478 TATTTTATAT
1 TATTTTATAT
132084488 ATTTTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTTATATTCTAAA
Found at i:132084540 original size:16 final size:16
Alignment explanation
Indices: 132084422--132084540 Score: 56
Period size: 17 Copynumber: 7.6 Consensus size: 16
132084412 ATTATATTCA
132084422 ATTTATTTATATATTAT
1 ATTTATTTATATA-TAT
*
132084439 ATCTATTT-TAT-TAT
1 ATTTATTTATATATAT
132084453 A--TATTCTA-A-ATAT
1 ATTTATT-TATATATAT
* * *
132084466 -TTTATATCTAAATAT
1 ATTTATTTATATATAT
* * *
132084481 -TTTATATATTTTTAT
1 ATTTATTTATATATAT
*
132084496 ATTTATATATTATATTAT
1 ATTTATTTA-TATA-TAT
*
132084514 TTTTATATTATATATAT
1 ATTTAT-TTATATATAT
132084531 ATTTATTTAT
1 ATTTATTTAT
132084541 TTTTTGTATA
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
12 4 0.05
13 6 0.08
14 8 0.10
15 15 0.19
16 15 0.19
17 17 0.22
18 12 0.15
19 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTATTTATATATAT
Found at i:132085815 original size:14 final size:14
Alignment explanation
Indices: 132085793--132085826 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
132085783 AATAGAAAAC
*
132085793 TTTTCATCACTTTT
1 TTTTTATCACTTTT
132085807 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
132085821 TCTTTA
1 TTTTTA
132085827 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:132093448 original size:2 final size:2
Alignment explanation
Indices: 132093441--132093480 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
132093431 AGTATAGTTG
* *
132093441 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
132093481 TCGGCCATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:132094155 original size:29 final size:29
Alignment explanation
Indices: 132094120--132094193 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
132094110 GTTGTGAGAT
* *
132094120 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
132094149 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
132094178 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
132094194 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:132105187 original size:23 final size:23
Alignment explanation
Indices: 132105160--132105248 Score: 63
Period size: 23 Copynumber: 3.7 Consensus size: 23
132105150 GCTGATAACA
*
132105160 GTAAGCTCATATGAGCTAAAACG
1 GTAAGCTCATACGAGCTAAAACG
* * * *
132105183 GTAAGCTC-TAATGAGTTGAAACA
1 GTAAGCTCAT-ACGAGCTAAAACG
* * *
132105206 GTAAACTCTTACGAGCTGATATATCG
1 GTAAGCTCATACGAGCT-A-A-AACG
132105232 GTAAGCTCATACGAGCT
1 GTAAGCTCATACGAGCT
132105249 GTGGTGTGTA
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
22 1 0.02
23 30 0.60
24 1 0.02
25 1 0.02
26 17 0.34
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (23 bp):
GTAAGCTCATACGAGCTAAAACG
Found at i:132109529 original size:39 final size:38
Alignment explanation
Indices: 132109416--132109609 Score: 192
Period size: 39 Copynumber: 5.0 Consensus size: 38
132109406 CACTCACTTC
* * * * *
132109416 TAAGCATATATCATATTACACATATAATCACCTAACATA
1 TAAGCATATATCACAATACTCATATAAT-ACATAACATT
* *
132109455 CAAGAATATATCACAATACTCA-ATAATCACATAACATT
1 TAAGCATATATCACAATACTCATATAAT-ACATAACATT
*
132109493 TAAGCATATATCACAATTCTCATATAATATCATAACATT
1 TAAGCATATATCACAATACTCATATAATA-CATAACATT
* ** * *
132109532 CAAAAATATATAACAATACTCATATAATCGCATAACATT
1 TAAGCATATATCACAATACTCATATAAT-ACATAACATT
* * *
132109571 TATGCATATATTACAATACTCGTATAATTACATAACATT
1 TAAGCATATATCACAATACTCATATAA-TACATAACATT
132109610 CATAATTTAA
Statistics
Matches: 128, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
38 34 0.27
39 93 0.73
40 1 0.01
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (38 bp):
TAAGCATATATCACAATACTCATATAATACATAACATT
Found at i:132109597 original size:78 final size:77
Alignment explanation
Indices: 132109416--132109611 Score: 250
Period size: 77 Copynumber: 2.5 Consensus size: 77
132109406 CACTCACTTC
* * * * * * * *
132109416 TAAGCATATATCATATTACACATATAATCACCTAACATACAAGAATATATCACAATACTCAATAA
1 TAAGCATATATCACAATACTCATATAATTACATAACATTCAAAAATATATAACAATACTCAATAA
132109481 TCACATAACATT
66 TCACATAACATT
*
132109493 TAAGCATATATCACAATTCTCATATAA-TATCATAACATTCAAAAATATATAACAATACTCATAT
1 TAAGCATATATCACAATACTCATATAATTA-CATAACATTCAAAAATATATAACAATACTCA-AT
*
132109557 AATCGCATAACATT
64 AATCACATAACATT
* * *
132109571 TATGCATATATTACAATACTCGTATAATTACATAACATTCA
1 TAAGCATATATCACAATACTCATATAATTACATAACATTCA
132109612 TAATTTAAGA
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
76 1 0.01
77 50 0.49
78 49 0.48
79 2 0.02
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (77 bp):
TAAGCATATATCACAATACTCATATAATTACATAACATTCAAAAATATATAACAATACTCAATAA
TCACATAACATT
Found at i:132112387 original size:27 final size:27
Alignment explanation
Indices: 132112263--132112377 Score: 185
Period size: 27 Copynumber: 4.3 Consensus size: 27
132112253 TAATGGATAG
* *
132112263 AAATGACCGTAATGCCCCCGTAAGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
132112290 AAATGACCGTAATGCCCCCGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
132112317 AAATGATCGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
132112344 AAATGACCGTAATGCCCCTATAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
132112371 AAATGAC
1 AAATGAC
132112378 AAGTATGCCC
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAGGGTA
Found at i:132112558 original size:27 final size:27
Alignment explanation
Indices: 132112515--132112598 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
132112505 TGGAGGAAGT
* *
132112515 ACTG-TACTAGTGACTATGTCACATTC
1 ACTGATACTGGTGGCTATGTCACATTC
*
132112541 ACTGATACTGGTGGCTATGCCACAATT-
1 ACTGATACTGGTGGCTATGTCAC-ATTC
* *
132112568 ACTGATACTGATGGCTTTGTCACATTC
1 ACTGATACTGGTGGCTATGTCACATTC
132112595 ACTG
1 ACTG
132112599 TTTCTGGTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.14
27 39 0.80
28 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
ACTGATACTGGTGGCTATGTCACATTC
Found at i:132114291 original size:21 final size:20
Alignment explanation
Indices: 132114249--132114297 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
132114239 ACTTTTATTT
* *
132114249 AAAACATGATTTAATGACTA
1 AAAACATGATTTAAAGAATA
*
132114269 AAAACTTGATGTTAAAGAATA
1 AAAACATGAT-TTAAAGAATA
132114290 AATAACAT
1 AA-AACAT
132114298 ATAAAACATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 9 0.39
21 10 0.43
22 4 0.17
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (20 bp):
AAAACATGATTTAAAGAATA
Found at i:132121443 original size:20 final size:20
Alignment explanation
Indices: 132121414--132121458 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
132121404 AACACATGTA
* *
132121414 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
132121434 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
132121454 TTCAT
1 TTCAT
132121459 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:132123417 original size:31 final size:31
Alignment explanation
Indices: 132123349--132123418 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
132123339 TATAACATTT
*
132123349 ATTCACGTATGTATCACATTACACACTTATG
1 ATTCACTTATGTATCACATTACACACTTATG
*
132123380 ATTCACTTATGTATCACATTACACATTTATG
1 ATTCACTTATGTATCACATTACACACTTATG
132123411 ATTCACTT
1 ATTCACTT
132123419 CAAATCAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (31 bp):
ATTCACTTATGTATCACATTACACACTTATG
Found at i:132124397 original size:31 final size:31
Alignment explanation
Indices: 132124355--132124424 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
132124345 TATAACATTT
*
132124355 ATTCACGTATGTATCACATTAAACACTTATG
1 ATTCACTTATGTATCACATTAAACACTTATG
* *
132124386 ATTCACTTATGTATCACATTACACATTTATG
1 ATTCACTTATGTATCACATTAAACACTTATG
132124417 ATTCACTT
1 ATTCACTT
132124425 CAAATCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (31 bp):
ATTCACTTATGTATCACATTAAACACTTATG
Found at i:132125032 original size:38 final size:38
Alignment explanation
Indices: 132124972--132125241 Score: 407
Period size: 38 Copynumber: 7.1 Consensus size: 38
132124962 AAAGGCCCAA
* * *
132124972 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
132125010 ATATATTACCAGTACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
132125048 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
132125086 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
132125124 ATATAATACTAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * *
132125162 A-ATATTACCAGCACGAAGCCTACGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
132125199 ATATAATACCAGCACGAAACCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
132125237 ATATA
1 ATATA
132125242 CATCAAATAT
Statistics
Matches: 209, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 32 0.15
38 177 0.85
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:132125214 original size:113 final size:114
Alignment explanation
Indices: 132124972--132125241 Score: 443
Period size: 113 Copynumber: 2.4 Consensus size: 114
132124962 AAAGGCCCAA
* * * * *
132124972 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCTGGATATATTACCAGTACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
*
132125037 ATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGG
66 ATTTAACCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCTGG
* * *
132125086 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACTAGCACGAAGCCTGTGGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
132125151 ATTTAACCCGGA-ATATTACCAGCACGAAGCCTACGGGATTTAACCTGG
66 ATTTAACCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCTGG
*
132125199 ATATAATACCAGCACGAAACCTGCGGGATTTAACCCGGATATA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
132125242 CATCAAATAT
Statistics
Matches: 145, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
113 76 0.52
114 69 0.48
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (114 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCGGATATATTACCAGCACGAAGCCTACGGGATTTAACCTGG
Found at i:132133196 original size:49 final size:47
Alignment explanation
Indices: 132133079--132133395 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
132133069 GATTTTACGC
* * *
132133079 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
132133126 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
132133173 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
132133222 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
132133271 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
132133318 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
132133365 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
132133396 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:132133203 original size:96 final size:93
Alignment explanation
Indices: 132133079--132133395 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
132133069 GATTTTACGC
132133079 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
132133144 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
132133173 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
132133238 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
132133271 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
132133336 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
132133365 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
132133396 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:132135388 original size:42 final size:41
Alignment explanation
Indices: 132135324--132135535 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
132135314 CTCGACGATG
* * *
132135324 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
132135366 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
132135406 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
132135446 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
132135486 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
132135528 ATTCGGGC
1 ATCCGGGC
132135536 CTTCGAGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:132135566 original size:43 final size:43
Alignment explanation
Indices: 132135518--132135695 Score: 311
Period size: 43 Copynumber: 4.1 Consensus size: 43
132135508 CAGTCATGCT
132135518 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
132135561 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
132135604 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
132135647 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
132135690 GGTGAT
1 GGTGAT
132135696 TCGAGCAAGG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:132139553 original size:49 final size:47
Alignment explanation
Indices: 132139436--132139752 Score: 465
Period size: 47 Copynumber: 6.7 Consensus size: 47
132139426 GATTTTACGC
* * *
132139436 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
132139483 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
132139530 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
132139579 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
132139628 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
132139675 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
132139722 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
132139753 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 154 0.62
48 9 0.04
49 87 0.35
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:132139560 original size:96 final size:93
Alignment explanation
Indices: 132139436--132139752 Score: 465
Period size: 96 Copynumber: 3.3 Consensus size: 93
132139426 GATTTTACGC
132139436 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
132139501 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
132139530 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
132139595 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
132139628 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
132139693 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
132139722 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
132139753 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
94 62 0.30
95 9 0.04
96 87 0.43
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:132141600 original size:38 final size:38
Alignment explanation
Indices: 132141544--132141855 Score: 466
Period size: 38 Copynumber: 8.3 Consensus size: 38
132141534 GGCTCAAAGG
* * * *
132141544 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
132141582 CCTGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
132141620 CCCGGATAT--TACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
132141656 CCCGGATATAATACCAGCACAAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
132141694 CCCGGATATAATACCAGGACGAAGCTTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
132141732 CCCGGACATATTACCGGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
132141770 CCCGGATATAATACCAGCACGAACCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
132141808 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
132141846 CCCGGATATA
1 CCCGGATATA
132141856 CATCAAATAT
Statistics
Matches: 247, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
36 35 0.14
38 212 0.86
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:132143820 original size:39 final size:39
Alignment explanation
Indices: 132143703--132143887 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 39
132143693 GCTACTCGTT
* * * *
132143703 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
132143743 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
132143783 CCAATGCCTTCGGG-CTTAGCCCGAGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GATTAGTAACTCGCA
* * * *
132143822 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
132143863 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
132143888 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.27
40 76 0.61
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:132143871 original size:79 final size:80
Alignment explanation
Indices: 132143703--132143887 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
132143693 GCTACTCGTT
* * *
132143703 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAGCTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* *
132143768 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* * ** *
132143784 CAATGCCTTCGGG-CTTAGCCCGAGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTG
1 CAAAGCCTTCGGGACTTAGCCCG-GATATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCG
*
132143846 GATATAGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
132143863 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
132143888 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:132147577 original size:39 final size:40
Alignment explanation
Indices: 132147452--132147579 Score: 129
Period size: 39 Copynumber: 3.2 Consensus size: 40
132147442 ATGCTGGAAA
* * *
132147452 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGT-GCGAGTGG
* * **
132147492 CTATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
132147531 TTCTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
132147570 TTATATCCGG
1 TTATATCCGG
132147580 TTATATTCCG
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 47 0.66
40 23 0.32
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:132152219 original size:40 final size:39
Alignment explanation
Indices: 132152051--132152221 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
132152041 AGAAATTGAA
* *
132152051 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
132152091 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
132152131 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
132152171 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
132152211 TGATATCCGGG
1 TGATATCCGGG
132152222 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:132160249 original size:40 final size:39
Alignment explanation
Indices: 132160081--132160251 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
132160071 AGAAATTGAA
* *
132160081 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
132160121 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
132160161 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
132160201 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
132160241 TGATATCCGGG
1 TGATATCCGGG
132160252 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:132163754 original size:25 final size:25
Alignment explanation
Indices: 132163725--132163772 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
132163715 TTATAATATG
* * *
132163725 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
132163750 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
132163773 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:132163841 original size:20 final size:20
Alignment explanation
Indices: 132163816--132163874 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
132163806 TAAATATGGT
132163816 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
132163836 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
132163856 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
132163875 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:132163856 original size:11 final size:11
Alignment explanation
Indices: 132163820--132163874 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
132163810 TATGGTATGT
132163820 ATGATATGCAC
1 ATGATATGCAC
* *
132163831 ATGAAATG--T
1 ATGATATGCAC
132163840 ATGATATGCAC
1 ATGATATGCAC
*
132163851 ATGATATG--T
1 ATGATATGCAC
132163860 ATGATATGCAC
1 ATGATATGCAC
132163871 ATGA
1 ATGA
132163875 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:132163952 original size:24 final size:24
Alignment explanation
Indices: 132163925--132164067 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
132163915 GAGGAAGTGA
132163925 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
132163949 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
132163973 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
132163996 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
132164020 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
132164044 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
132164068 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:132164018 original size:47 final size:47
Alignment explanation
Indices: 132163925--132164067 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
132163915 GAGGAAGTGA
132163925 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
132163973 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
132164020 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
132164068 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:132164041 original size:71 final size:72
Alignment explanation
Indices: 132163925--132164068 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
132163915 GAGGAAGTGA
*
132163925 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
132163988 CCAGTTAT
65 CCAGTTAT
** * *
132163996 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
132164061 CAGTTAT
66 CAGTTAT
132164068 A
1 A
132164069 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:132164294 original size:31 final size:31
Alignment explanation
Indices: 132164259--132164353 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
132164249 CGTTTACAGT
132164259 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
132164290 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
132164321 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
132164352 AA
1 AA
132164354 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:132164943 original size:24 final size:24
Alignment explanation
Indices: 132164916--132164967 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
132164906 TCTGCCTCGG
132164916 ATACCTACCTGGTGCTTAGCTTCC
1 ATACCTACCTGGTGCTTAGCTTCC
132164940 ATACCTACCTGGTGCTTAGCTTCC
1 ATACCTACCTGGTGCTTAGCTTCC
132164964 ATAC
1 ATAC
132164968 ACTTTGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33
Consensus pattern (24 bp):
ATACCTACCTGGTGCTTAGCTTCC
Found at i:132166178 original size:43 final size:43
Alignment explanation
Indices: 132166115--132166210 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
132166105 GTAATTACAT
* *
132166115 ATCGATGCCACTGTCCCAGACA-TGGTTTACAACAAAATCTCTA
1 ATCGATGCCACTGTCCCAGACACAGGTTTAC-ACAAAATCTCAA
* ** * *
132166158 ATCGATGCCAGTGTTTCAGACACAGTTTTACACAATATCTCAA
1 ATCGATGCCACTGTCCCAGACACAGGTTTACACAAAATCTCAA
*
132166201 ATTGATGCCA
1 ATCGATGCCA
132166211 ACATCCTAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 38 0.86
44 6 0.14
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATCGATGCCACTGTCCCAGACACAGGTTTACACAAAATCTCAA
Found at i:132170259 original size:21 final size:21
Alignment explanation
Indices: 132170220--132170259 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
132170210 TTGCTGATTC
*
132170220 ATTAAATTTTCTGACCACATT
1 ATTAAATTTTCTCACCACATT
* *
132170241 ATTAATTTTTCTCAGCACA
1 ATTAAATTTTCTCACCACA
132170260 GACTTCAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (21 bp):
ATTAAATTTTCTCACCACATT
Found at i:132173807 original size:25 final size:25
Alignment explanation
Indices: 132173775--132173822 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
132173765 TGATAATATG
* *
132173775 AAAATGACTATTTTACCCTTAGGTA
1 AAAATGACCATTATACCCTTAGGTA
*
132173800 AAAATGACCATTATGCCCTTAGG
1 AAAATGACCATTATACCCTTAGG
132173823 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTATACCCTTAGGTA
Found at i:132173978 original size:24 final size:25
Alignment explanation
Indices: 132173921--132173978 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
132173911 GGAGGAAGTG
*
132173921 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTA
*
132173946 AAAAGGGCTTTGCCCCAG-TTATTA
1 AAAAGGGCTTTGCCCCAGTTTACTA
*
132173970 AAAAAGGCT
1 AAAAGGGCT
132173979 AGGCCTCTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTA
Found at i:132184034 original size:43 final size:43
Alignment explanation
Indices: 132183944--132184104 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
132183934 ATATCATACA
* * * * * * *
132183944 ATGCCAACGTCCCAGACGTAGTCTTACATGTAAT-TACATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCT-CAAATCG
* *
132183987 ATGCCATTGTCCCAGACATGGTC-TACAACGAAATCTCTAATCG
1 ATGCCAATGTCCCAGACATGGTCTTAC-ACGAAATCTCAAATCG
* ** * * *
132184030 ATGCCAGTGTTTCAGACACGGTCTTACACGATATCTCAAATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAATCG
* *
132184073 ATGCCAACGTCCCAGACGTGGTCTTACACGAA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAA
132184105 TCATATCTCG
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 3 0.03
43 85 0.92
44 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAATCG
Found at i:132187668 original size:40 final size:40
Alignment explanation
Indices: 132187620--132187882 Score: 382
Period size: 40 Copynumber: 6.6 Consensus size: 40
132187610 CTACTCACTC
* * * *
132187620 AATGCCTTTGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* * * *
132187660 AATGCCTTTGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* * *
132187700 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCTCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* *
132187740 AATGCCCTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
*
132187780 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
* *
132187820 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
132187860 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
132187883 TTATCATCCG
Statistics
Matches: 211, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
Found at i:132187759 original size:120 final size:119
Alignment explanation
Indices: 132187586--132187882 Score: 400
Period size: 120 Copynumber: 2.5 Consensus size: 119
132187576 AAGCCAAGTA
* * * * * *
132187586 CCTTCGGGATTTA-ACCGGATATAGCTACTCACTC-AATGCCTTTGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAA
* * * *
132187649 TAACTCGCACCAATGCCTTTGGGACATAGCCCGGATATAGTAACTCGCACCAATG
65 TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATG
* * *
132187704 CCTTCGGGACTTAGCCCGGATATAGTAGCTCTCACAAATGCCCTCGGGACTTAGCCCGGATGTAA
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCACACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
132187769 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
65 TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATG
* *
132187824 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCACACAAATGCCTTCGGGACTTAGCCCGG
132187883 TTATCATCCG
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
118 14 0.09
119 15 0.10
120 126 0.81
121 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATG
Found at i:132195812 original size:40 final size:40
Alignment explanation
Indices: 132195719--132195974 Score: 340
Period size: 40 Copynumber: 6.5 Consensus size: 40
132195709 AAGCCAAGTA
* * * *
132195719 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * *
132195757 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
132195797 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
132195837 CCCTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
132195877 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
132195917 CCTTCGGGACTTAGCCCGGATGTAAT-ACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
132195956 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
132195975 TTGTCATCCG
Statistics
Matches: 199, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
38 12 0.06
39 47 0.24
40 140 0.70
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:132198389 original size:25 final size:25
Alignment explanation
Indices: 132198360--132198407 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
132198350 CCTTATAATG
* * *
132198360 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
132198385 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
132198408 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:132198476 original size:20 final size:20
Alignment explanation
Indices: 132198451--132198509 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
132198441 TAAATATGGT
132198451 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
132198471 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
132198491 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
132198510 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:132198491 original size:11 final size:11
Alignment explanation
Indices: 132198455--132198509 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
132198445 TATGGTATGT
132198455 ATGATATGCAC
1 ATGATATGCAC
* *
132198466 ATGAAATG--T
1 ATGATATGCAC
132198475 ATGATATGCAC
1 ATGATATGCAC
*
132198486 ATGATATG--T
1 ATGATATGCAC
132198495 ATGATATGCAC
1 ATGATATGCAC
132198506 ATGA
1 ATGA
132198510 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:132198590 original size:23 final size:24
Alignment explanation
Indices: 132198560--132198656 Score: 126
Period size: 26 Copynumber: 4.0 Consensus size: 24
132198550 GAGGAAGTGA
132198560 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
132198583 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
132198607 GAAAAAGGGCTTTTGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
132198633 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
132198657 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
23 22 0.33
24 10 0.15
25 11 0.17
26 23 0.35
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:132198629 original size:49 final size:52
Alignment explanation
Indices: 132198557--132198665 Score: 154
Period size: 49 Copynumber: 2.2 Consensus size: 52
132198547 ATGGAGGAAG
*
132198557 TGAAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT-
1 TGAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATA
*
132198606 TGAAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATA
1 TGAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATA
*
132198658 TGATAAAG
1 TGAAAAAG
132198666 CAGCTATGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
49 24 0.45
50 11 0.21
51 11 0.21
52 7 0.13
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (52 bp):
TGAAAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATA
Found at i:132198652 original size:25 final size:25
Alignment explanation
Indices: 132198560--132198656 Score: 114
Period size: 23 Copynumber: 4.0 Consensus size: 25
132198550 GAGGAAGTGA
132198560 AAAAG-GGCTTATGCCCCAGTTA-T
1 AAAAGAGGCTTATGCCCCAGTTATT
132198583 AAAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTATGCCCCAGTTATT
*
132198607 GAAAA-AGGGCTTTTGCCCCAGTTATT
1 -AAAAGA-GGCTTATGCCCCAGTTATT
*
132198633 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGAGGCTTATGCC-CCAGTTAT
132198657 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
23 22 0.34
24 5 0.08
25 19 0.29
26 19 0.29
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTATGCCCCAGTTATT
Found at i:132198883 original size:31 final size:31
Alignment explanation
Indices: 132198848--132198942 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
132198838 CGTTTACAGT
132198848 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
132198879 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
132198910 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
132198941 AA
1 AA
132198943 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:132204929 original size:25 final size:25
Alignment explanation
Indices: 132204900--132204947 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
132204890 CCTTATAATG
* * *
132204900 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
132204925 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
132204948 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:132205014 original size:20 final size:20
Alignment explanation
Indices: 132204989--132205045 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
132204979 GATAAATATG
132204989 GTATGATATGCACATGACAT
1 GTATGATATGCACATGACAT
*
132205009 GTATGATATGCACATGATAT
1 GTATGATATGCACATGACAT
132205029 GTATGATATGCACATGA
1 GTATGATATGCACATGA
132205046 GGTAATCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
GTATGATATGCACATGACAT
Found at i:132205027 original size:11 final size:11
Alignment explanation
Indices: 132204991--132205045 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
132204981 TAAATATGGT
132204991 ATGATATGCAC
1 ATGATATGCAC
* *
132205002 ATGACATG--T
1 ATGATATGCAC
132205011 ATGATATGCAC
1 ATGATATGCAC
*
132205022 ATGATATG--T
1 ATGATATGCAC
132205031 ATGATATGCAC
1 ATGATATGCAC
132205042 ATGA
1 ATGA
132205046 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:132205123 original size:24 final size:24
Alignment explanation
Indices: 132205096--132205214 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
132205086 GAGGAAGTGA
*
132205096 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
132205120 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
132205143 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
132205167 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
132205191 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
132205215 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:132205165 original size:47 final size:48
Alignment explanation
Indices: 132205096--132205214 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
132205086 GAGGAAGTGA
132205096 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
132205143 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
132205191 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
132205215 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:132205439 original size:31 final size:31
Alignment explanation
Indices: 132205404--132205488 Score: 133
Period size: 30 Copynumber: 2.9 Consensus size: 31
132205394 CGTTTACAGT
132205404 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
132205435 AAAGGCTTCGGCCCAGT-ATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
132205465 AAAGGC-T-GG-CCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTAATATGAAAT
132205489 GAAATGGGGC
Statistics
Matches: 52, Mismatches: 1, Indels: 5
0.90 0.02 0.09
Matches are distributed among these distances:
27 5 0.10
28 10 0.19
29 1 0.02
30 19 0.37
31 17 0.33
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:132209106 original size:30 final size:30
Alignment explanation
Indices: 132209062--132209150 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
132209052 CAAAGATAAC
132209062 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
132209091 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
132209121 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
132209151 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:132209110 original size:15 final size:15
Alignment explanation
Indices: 132209062--132209141 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
132209052 CAAAGATAAC
*
132209062 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
132209076 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
132209091 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
132209106 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
132209121 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
132209136 AAGAAA
1 AAGAAA
132209142 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:132209150 original size:15 final size:15
Alignment explanation
Indices: 132209073--132209150 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
132209063 AGAAAACCGA
132209073 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
132209088 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
132209102 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
132209117 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
132209133 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
132209148 ATA
1 ATA
132209151 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:132212193 original size:93 final size:93
Alignment explanation
Indices: 132212081--132212252 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
132212071 GCCCATAAGT
* *
132212081 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
132212146 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
132212174 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
132212239 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
132212253 AATATCCTAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.