Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 430 of 770
Found at i:132672519 original size:24 final size:24
Alignment explanation
Indices: 132672492--132672569 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
132672482 CCGGTTAGGT
* *
132672492 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132672516 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132672540 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132672564 TCCCGG
1 TCCCGG
132672570 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:132672890 original size:85 final size:85
Alignment explanation
Indices: 132672756--132673456 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
132672746 CACATTGCTG
* * * * * *
132672756 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
132672821 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
132672843 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
132672906 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
132672927 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
132672991 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
*
132673011 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
132673076 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
132673097 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
132673160 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
132673180 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
132673245 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
132673265 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
132673330 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
132673351 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
132673415 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
132673437 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
132673457 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 49, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
83 29 0.05
84 88 0.16
85 343 0.62
86 87 0.16
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:132672900 original size:42 final size:42
Alignment explanation
Indices: 132672756--132673456 Score: 833
Period size: 43 Copynumber: 16.5 Consensus size: 42
132672746 CACATTGCTG
* * * * * *
132672756 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
132672799 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
132672843 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
132672884 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
132672927 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
132672969 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
132673011 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
132673054 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
132673097 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
132673138 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
132673180 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
132673223 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
132673265 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
132673308 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
132673351 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
132673393 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
132673436 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
132673457 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 60, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
41 32 0.06
42 241 0.41
43 305 0.52
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:132673362 original size:128 final size:128
Alignment explanation
Indices: 132672740--132673456 Score: 961
Period size: 128 Copynumber: 5.6 Consensus size: 128
132672730 GGTACGGGAG
* * * * * * *
132672740 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
* *
132672805 CGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCC-TGGTCGTGCGGGAGCCTCGGCCAC
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * *
132672868 CATCGGCACCTAGGCCCCTGGTCATGT--AGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
1 CATCGGCACCTTGGTGCTTGG--ATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
*
132672931 GTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
132672995 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
*
132673060 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-AC
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** *
132673122 CATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
*
132673185 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
65 -TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * *
132673249 CATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
* * * *
132673314 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCAG
66 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * *
132673377 CATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-
*
132673442 T-GTGCGGGTGCCTCG
65 TCGTGCGGGAGCCTCG
132673457 AGCAGCAGGG
Statistics
Matches: 522, Mismatches: 52, Indels: 30
0.86 0.09 0.05
Matches are distributed among these distances:
125 4 0.01
126 73 0.14
127 204 0.39
128 236 0.45
129 2 0.00
130 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.18
Consensus pattern (128 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:132681341 original size:24 final size:24
Alignment explanation
Indices: 132681302--132681355 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
132681292 CCGGTTAGGT
* * *
132681302 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
132681326 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
132681350 TCCCGG
1 TCCCGG
132681356 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:132681480 original size:58 final size:59
Alignment explanation
Indices: 132681389--132681509 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
132681379 CCCTCCCCAA
* *
132681389 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
132681448 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
132681506 TCCC
1 TCCC
132681510 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:132681933 original size:24 final size:24
Alignment explanation
Indices: 132681906--132681983 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
132681896 CCGGTTAGGT
* *
132681906 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132681930 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132681954 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
132681978 TCCCGG
1 TCCCGG
132681984 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:132682314 original size:42 final size:42
Alignment explanation
Indices: 132682170--132682865 Score: 797
Period size: 42 Copynumber: 16.5 Consensus size: 42
132682160 CACATTGCTG
* * * * * *
132682170 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
132682213 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
132682257 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
132682298 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
132682341 CTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
132682382 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
132682424 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
132682467 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
132682509 CTTGGTCGTGCGAGAGCCTC-GG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
132682549 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
132682591 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
132682634 CCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
132682675 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
132682718 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
132682760 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
132682802 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
132682845 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
132682866 AGCAGCAGGG
Statistics
Matches: 573, Mismatches: 58, Indels: 44
0.85 0.09 0.07
Matches are distributed among these distances:
40 28 0.05
41 58 0.10
42 288 0.50
43 197 0.34
44 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:132682817 original size:336 final size:337
Alignment explanation
Indices: 132682195--132682842 Score: 965
Period size: 336 Copynumber: 1.9 Consensus size: 337
132682185 GCCTTGGACG
132682195 CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCCTG
1 CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCCTG
*
132682260 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACC
66 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCCTCGGCCACC
*
132682325 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTCG
131 ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACACCATCGGCACCTAGGCCCTTGGTCG
*
132682390 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCG
196 TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
*
132682455 GCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
261 GCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC
132682520 GAGAGCCTCGGA
326 GAGAGCCTCGGA
*
132682532 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGC-CCTT
1 CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCC-T
* * * *
132682594 GGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG-CGGAGCCTCGGGC
65 GG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCCTCGGCC
* * ** * *
132682657 ACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCT
128 ACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-ACACCATCGGC-ACCTAGGCCCT
132682720 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
190 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGC
* * * * *
132682784 AGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
254 ACCATCGGCAACCTAGG-CCCTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
132682843 ACGTTGGATG
Statistics
Matches: 282, Mismatches: 20, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
334 25 0.09
335 79 0.28
336 170 0.60
337 8 0.03
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.18
Consensus pattern (337 bp):
CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCCTG
GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCCTCGGCCACC
ATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACACCATCGGCACCTAGGCCCTTGGTCG
TGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCG
GCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC
GAGAGCCTCGGA
Found at i:132688022 original size:40 final size:40
Alignment explanation
Indices: 132687977--132688144 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
132687967 CGGAATATAA
*
132687977 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
132688017 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
132688057 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
132688097 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
132688137 CCGGATAT
1 CCGGATAT
132688145 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 104 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:132688127 original size:80 final size:80
Alignment explanation
Indices: 132687993--132688144 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
132687983 ATAACCATGT
* *
132687993 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
132688058 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
132688073 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
132688136 CCCGGATAT
64 CCCGGATAT
132688145 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:132696040 original size:40 final size:40
Alignment explanation
Indices: 132695995--132696124 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
132695985 CGGAATATAA
132695995 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
132696035 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
132696075 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
132696115 CCGGATATAA
1 CCGGATATAA
132696125 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:132696139 original size:40 final size:40
Alignment explanation
Indices: 132696011--132696162 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
132696001 ATAAGCATGT
* * *
132696011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
132696051 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
132696091 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
132696131 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
132696163 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:132696145 original size:80 final size:80
Alignment explanation
Indices: 132696011--132696162 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
132696001 ATAAGCATGT
* *
132696011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
132696076 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
132696091 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
132696154 CCCGGATAT
64 CCCGGATAT
132696163 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:132703368 original size:55 final size:55
Alignment explanation
Indices: 132703302--132703484 Score: 240
Period size: 55 Copynumber: 3.3 Consensus size: 55
132703292 GGCCGTGGGT
* * *
132703302 GAACCTGTCAAATCAACAAGGGTGTGCGACACACCCGTGCCTGGAAACCGTGGCC
1 GAACCTGTCAAATTAACAAGGGCGTGCGACACGCCCGTGCCTGGAAACCGTGGCC
* * *
132703357 GAACCTATCAAATTAACAAGGGCGTGGGACACGCCCGTGCCTGGAAATCGTGGCC
1 GAACCTGTCAAATTAACAAGGGCGTGCGACACGCCCGTGCCTGGAAACCGTGGCC
* * * * * *
132703412 GAACCTGTCAAATTAACACGGGCGTGCGACACGGCCGTGCCTAGCAACAGTGGGC
1 GAACCTGTCAAATTAACAAGGGCGTGCGACACGCCCGTGCCTGGAAACCGTGGCC
* *
132703467 GAACCTGCCAAAATAACA
1 GAACCTGTCAAATTAACA
132703485 CCGGTATAGA
Statistics
Matches: 111, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 111 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (55 bp):
GAACCTGTCAAATTAACAAGGGCGTGCGACACGCCCGTGCCTGGAAACCGTGGCC
Found at i:132709893 original size:97 final size:96
Alignment explanation
Indices: 132709704--132709924 Score: 264
Period size: 97 Copynumber: 2.3 Consensus size: 96
132709694 TATGTTCGTT
* *
132709704 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACGATATGAGATCCAGTGTAAGACCATGTTT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTCT
* *** ** *
132709769 GGAACATGGCATCATTGATGTTGTGAGAGCC
66 GGAACATGGCACCACCCACATTATGAGAGCC
* * * *
132709800 AGTGTAAGATCATGTCTGGGATATGGTATCGGCCATC-ATTATGAGAGCGAGTGTAAGACCATGT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCA-CGA-TATGAGAGCCAGTGTAAGACCATGT
*
132709864 CTGGGACATGGCACCACCCACATTATGAGAGCC
64 CTGGAACATGGCACCACCCACATTATGAGAGCC
* * *
132709897 AGTGTAAGACCATATCTAGGACATGGCA
1 AGTGTAAGAACATGTCTGGGACATGGCA
132709925 CCGACATTGG
Statistics
Matches: 104, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
96 33 0.32
97 71 0.68
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (96 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTCT
GGAACATGGCACCACCCACATTATGAGAGCC
Found at i:132709926 original size:48 final size:48
Alignment explanation
Indices: 132709704--132709924 Score: 237
Period size: 48 Copynumber: 4.6 Consensus size: 48
132709694 TATGTTCGTT
* * *
132709704 AGTGTAAGAACATGTCTGGGACATGGCATCGGCCACGA-TATGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCC
* * *** ** *
132709752 AGTGTAAGACCATGTTTGGAACATGGCATCATTGATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
* * * * *
132709800 AGTGTAAGATCATGTCTGGGATATGGTATCGGCCATCATTATGAGAGCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CATTATGAGAGCC
* *
132709849 AGTGTAAGACCATGTCTGGGACATGGCACCACCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
* *
132709897 AGTGTAAGACCATATCTAGGACATGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCA
132709925 CCGACATTGG
Statistics
Matches: 138, Mismatches: 33, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
48 100 0.72
49 38 0.28
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
Found at i:132709942 original size:48 final size:46
Alignment explanation
Indices: 132709836--132709957 Score: 120
Period size: 48 Copynumber: 2.6 Consensus size: 46
132709826 TATCGGCCAT
* * * *
132709836 CATTATGAGAGCGAGTGTAAGACCATGTCTGGGACATGGCACCACCCA
1 CATTACGAGAGCCAGTGTAAGACCATATCTAGGACATGG--CCACCCA
* *
132709884 CATTATGAGAGCCAGTGTAAGACCATATCTAGGACATGG-CACCGA
1 CATTACGAGAGCCAGTGTAAGACCATATCTAGGACATGGCCACCCA
* *
132709929 CATTGGGACGAGAGCTAGTGTAAAACCAT
1 CATT---ACGAGAGCCAGTGTAAGACCAT
132709958 GTCTGGAGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
45 9 0.14
48 55 0.86
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (46 bp):
CATTACGAGAGCCAGTGTAAGACCATATCTAGGACATGGCCACCCA
Found at i:132711586 original size:48 final size:48
Alignment explanation
Indices: 132711484--132711586 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
132711474 ACATCACATA
* * ** *
132711484 TCGATGCCAATGCCATGTCCCAAACACGGTCTTTCATGGGATCGTAGG
1 TCGATGCCAATGCCATGTCACAAACACGGTCTTACATGGGATCACACG
* *
132711532 TCGATGCCAATGCCATGTCACAATCATGGTCTTACATGGGATCACACG
1 TCGATGCCAATGCCATGTCACAAACACGGTCTTACATGGGATCACACG
*
132711580 TTGATGC
1 TCGATGC
132711587 TGATAGCCCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (48 bp):
TCGATGCCAATGCCATGTCACAAACACGGTCTTACATGGGATCACACG
Found at i:132715453 original size:42 final size:42
Alignment explanation
Indices: 132715255--132715442 Score: 295
Period size: 42 Copynumber: 4.5 Consensus size: 42
132715245 TGAGATTTAA
*
132715255 GTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
* * * *
132715297 GTGTAAGACCATGTTTAGGACATTGGCATCGAATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
*
132715339 GTGTAAGACCATGTCTGTGACATCGGCATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
*
132715381 GTGTAAGACCATGTCTGGGACACCGGCATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
* *
132715423 GTGTAAGACCCTATCTGGGA
1 GTGTAAGACCATGTCTGGGA
132715443 TAGAGGCATC
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 132 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
Found at i:132715453 original size:84 final size:83
Alignment explanation
Indices: 132715209--132715442 Score: 297
Period size: 84 Copynumber: 2.8 Consensus size: 83
132715199 ATCTGAGATA
* * * * *
132715209 TCGTGTAAGACCGTGTCTGGGACACAAGCCTCGATTTGAGATTTAAGTGTAAGACCATGTCTGGG
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCT--GATTT-CGTGTAAGACCATGTCTGGG
*
132715274 ACATCGGTATCGTATCTGATT
63 ACATCGGCATCGTATCTGATT
* * ** *
132715295 TCGTGTAAGACCATGTTTAGGACATTGGCATCGAATCTGATTTCGTGTAAGACCATGTCTGTGAC
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTGATTTCGTGTAAGACCATGTCTGGGAC
132715360 ATCGGCATCGTATCTGATT
65 ATCGGCATCGTATCTGATT
* * *
132715379 TCGTGTAAGACCATGTCTGGGACACCGGCATCGTATCTGATTTCGTGTAAGACCCTATCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-ATCTGATTTCGTGTAAGACCATGTCTGGGA
132715443 TAGAGGCATC
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
84 94 0.73
85 5 0.04
86 26 0.20
87 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (83 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGATTTCGTGTAAGACCATGTCTGGGACA
TCGGCATCGTATCTGATT
Found at i:132717390 original size:29 final size:29
Alignment explanation
Indices: 132717351--132717430 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
132717341 CTTAATAATC
*
132717351 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
132717381 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
132717410 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
132717431 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:132723781 original size:19 final size:19
Alignment explanation
Indices: 132723757--132723794 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
132723747 GTGATGAGGC
132723757 CTAATGGCCGATGTGGTGA
1 CTAATGGCCGATGTGGTGA
132723776 CTAATGGCCGATGTGGTGA
1 CTAATGGCCGATGTGGTGA
132723795 ACGTGAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.37, T:0.26
Consensus pattern (19 bp):
CTAATGGCCGATGTGGTGA
Found at i:132723836 original size:49 final size:49
Alignment explanation
Indices: 132723776--132723928 Score: 270
Period size: 49 Copynumber: 3.1 Consensus size: 49
132723766 GATGTGGTGA
132723776 CTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGC
1 CTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGC
* * *
132723825 CTAATGGCCGATGTGATGAACATGAAAGTGTATGTATGTGTGATGAGGC
1 CTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGC
*
132723874 CTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGC
1 CTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGC
132723923 CTAATG
1 CTAATG
132723929 ACCAATGTAA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 97 1.00
ACGTcount: A:0.27, C:0.10, G:0.33, T:0.29
Consensus pattern (49 bp):
CTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGC
Found at i:132724082 original size:37 final size:37
Alignment explanation
Indices: 132724039--132724153 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
132724029 GTTCCGGGCG
132724039 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
132724076 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
*
132724113 AGACCCGATGACTACGTGTGGAGATTATGACTGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
132724150 AGAC
1 AGAC
132724154 TTCTTTTATA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:132729361 original size:29 final size:29
Alignment explanation
Indices: 132729327--132729401 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
132729317 TAATCAATCA
* *
132729327 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACC
*
132729356 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAACC
132729385 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
132729402 TCTCTCAACA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACC
Found at i:132735617 original size:40 final size:40
Alignment explanation
Indices: 132735572--132735738 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
132735562 CGGAATATAA
132735572 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
132735612 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
132735652 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
132735692 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
132735731 CCGGATAT
1 CCGGATAT
132735739 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:132735722 original size:80 final size:79
Alignment explanation
Indices: 132735572--132735738 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
132735562 CGGAATATAA
* *
132735572 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
132735637 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
132735652 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
132735714 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
132735731 CCGGATAT
1 CCGGATAT
132735739 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:132736586 original size:17 final size:19
Alignment explanation
Indices: 132736563--132736608 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
132736553 AAGAAGCATG
132736563 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
132736581 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
132736599 AATCATGCTC
1 AATCATGCTC
132736609 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:132743618 original size:40 final size:40
Alignment explanation
Indices: 132743573--132743739 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
132743563 CGGAATATAA
132743573 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
132743613 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
132743653 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
132743693 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
132743732 CCGGATAT
1 CCGGATAT
132743740 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:132743723 original size:80 final size:79
Alignment explanation
Indices: 132743573--132743739 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
132743563 CGGAATATAA
* *
132743573 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
132743638 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
132743653 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
132743715 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
132743732 CCGGATAT
1 CCGGATAT
132743740 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:132744587 original size:17 final size:19
Alignment explanation
Indices: 132744564--132744609 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
132744554 AAGAAGCATG
132744564 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
132744582 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
132744600 AATCATGCTC
1 AATCATGCTC
132744610 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:132747020 original size:79 final size:82
Alignment explanation
Indices: 132746880--132747064 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
132746870 TCGAATGATG
* * *
132746880 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
132746944 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
132746960 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
132747022 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
132747040 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
132747065 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:132747072 original size:40 final size:40
Alignment explanation
Indices: 132746881--132747072 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
132746871 CGAATGATGT
* * * * *
132746881 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
132746921 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
132746961 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
132747000 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
132747040 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
132747073 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:132747095 original size:79 final size:79
Alignment explanation
Indices: 132746880--132747097 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
132746870 TCGAATGATG
* * * * ** *
132746880 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
132746943 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
132746960 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
132747025 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
132747040 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
132747098 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:132755029 original size:79 final size:82
Alignment explanation
Indices: 132754889--132755073 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
132754879 TCGAATGATG
* * *
132754889 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
132754953 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
132754969 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
132755031 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
132755049 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
132755074 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:132755081 original size:40 final size:40
Alignment explanation
Indices: 132754890--132755081 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
132754880 CGAATGATGT
* * * * *
132754890 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
132754930 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
132754970 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
132755009 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
132755049 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
132755082 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:132755104 original size:79 final size:79
Alignment explanation
Indices: 132754889--132755106 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
132754879 TCGAATGATG
* * * * ** *
132754889 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
132754952 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
132754969 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
132755034 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
132755049 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
132755107 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:132758799 original size:51 final size:51
Alignment explanation
Indices: 132758722--132758919 Score: 317
Period size: 51 Copynumber: 3.9 Consensus size: 51
132758712 CGGATACACG
*
132758722 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
132758773 GTGGCCTTCACATAATACCACACTTGTGTCCAAAGCTATTTTATTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
132758824 GTGGCCTTCACATAGTACCACACTTGTTTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
132758875 GTGGCCTTCACATAGTACCATACTTGTGTCCAAAGTTATTTTATT
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATT
132758920 ACTAAGGTTC
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 134 0.99
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:132759000 original size:52 final size:52
Alignment explanation
Indices: 132758944--132759170 Score: 357
Period size: 52 Copynumber: 4.4 Consensus size: 52
132758934 GGGAAATTTC
* * *
132758944 TCACTTGGCACCA-TGCCATGGACTTATTTCACTTAGATGCCATGGACATATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
132758996 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
132759048 TCACTTAGCACATTTCCATGGACTTATTTCATTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
132759100 TCATTTAGCACATTGCCATGGACTTATTTCACTTAGATGACATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
132759152 TCAATTAGCACAATGCCAT
1 TCACTTAGCACATTGCCAT
132759171 ATCCTAGATA
Statistics
Matches: 163, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
51 2 0.01
52 161 0.99
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:132759013 original size:28 final size:27
Alignment explanation
Indices: 132758944--132759170 Score: 235
Period size: 24 Copynumber: 8.7 Consensus size: 27
132758934 GGGAAATTTC
*
132758944 TCACTTGGCACCATGCCATGGACTTATT
1 TCACTTAGCA-CATGCCATGGACTTATT
*
132758972 TCACTTAG---ATGCCATGGACATATT
1 TCACTTAGCACATGCCATGGACTTATT
132758996 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
132759024 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
132759048 TCACTTAGCACATTTCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
132759076 TCATTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
132759100 TCATTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
132759128 TCACTTAG---ATGACATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
132759152 TCAATTAGCACAATGCCAT
1 TCACTTAGCAC-ATGCCAT
132759171 ATCCTAGATA
Statistics
Matches: 168, Mismatches: 15, Indels: 32
0.78 0.07 0.15
Matches are distributed among these distances:
24 86 0.51
25 3 0.02
27 3 0.02
28 76 0.45
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.37
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:132779919 original size:22 final size:22
Alignment explanation
Indices: 132779892--132779937 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
132779882 TATGTGTTAG
132779892 GCTTTTGAATTCAAATTGAGTT
1 GCTTTTGAATTCAAATTGAGTT
132779914 GCTTTTGAATTCAAATTGAGTT
1 GCTTTTGAATTCAAATTGAGTT
132779936 GC
1 GC
132779938 ATTATGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (22 bp):
GCTTTTGAATTCAAATTGAGTT
Found at i:132792338 original size:40 final size:40
Alignment explanation
Indices: 132792289--132792400 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
132792279 GTTATAATAG
* *
132792289 CTCGTACAAATGCCTTCAGGACTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTCAGGACTTAACCCGGATATGGGAA
** **
132792329 CTCGCACAAATGCCTTCA-GATCTTATTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCAGGA-CTTAACCCGGATATGGGAA
* * *
132792369 CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 C-TCGCACAAATGCCTTCAGGACTTAACCCGGA
132792401 CATCATTCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.03
40 47 0.80
41 10 0.17
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCAGGACTTAACCCGGATATGGGAA
Found at i:132795360 original size:29 final size:29
Alignment explanation
Indices: 132795325--132795398 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
132795315 GTTGTGAGAT
* *
132795325 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
132795354 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
132795383 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
132795399 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:132802783 original size:2 final size:2
Alignment explanation
Indices: 132802776--132802808 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
132802766 AGTATAGTTG
132802776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
132802809 AGGATTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:132803460 original size:29 final size:29
Alignment explanation
Indices: 132803425--132803498 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
132803415 GTTGTGAGAT
* *
132803425 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
132803454 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
132803483 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
132803499 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:132809427 original size:20 final size:20
Alignment explanation
Indices: 132809404--132809443 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
132809394 TTCATCAATC
*
132809404 TACACGTTGAGGCATCGGGG
1 TACACGTTGAGGAATCGGGG
*
132809424 TACAGGTTGAGGAATCGGGG
1 TACACGTTGAGGAATCGGGG
132809444 GAGGTGGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.42, T:0.20
Consensus pattern (20 bp):
TACACGTTGAGGAATCGGGG
Found at i:132822863 original size:48 final size:48
Alignment explanation
Indices: 132822802--132823075 Score: 222
Period size: 48 Copynumber: 5.7 Consensus size: 48
132822792 TGATATGTGT
*
132822802 GCCAGTGTAAGACCATGTCTGGGTCATGGCATTCGCCATGAT-ATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCATGATCATGAGA
* * * ** *
132822850 GCCACTGTAAGACCATGTTTGGAACATGGCATCG--ATGATGTTGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGATCATGAGA
* *
132822896 CTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CATCATGAGA
1 --GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGATCATGAGA
* * * * *
132822946 GCTAGTGTAAGACCATGTCTGGGACATAGCATCAG-TATTGA-GACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCA-TGATCATGAGA
* ** * **
132822994 GCTAGTGTAAGAATATGTCTGGGACATGGCATCGGCCTTCG--CATGTTA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCAT-GATCATGAGA
* *
132823042 GCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
132823076 GCAATTCACC
Statistics
Matches: 179, Mismatches: 37, Indels: 21
0.76 0.16 0.09
Matches are distributed among these distances:
45 5 0.03
46 4 0.02
47 5 0.03
48 155 0.87
49 3 0.02
50 6 0.03
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGATCATGAGA
Found at i:132823001 original size:96 final size:96
Alignment explanation
Indices: 132822802--132823075 Score: 290
Period size: 96 Copynumber: 2.9 Consensus size: 96
132822792 TGATATGTGT
* * *
132822802 GCCAGTGTAAGACCATGTCTGGGTCATGGCATTC-GCCATGAT-ATGAGAGCCACTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGGCCA-CATCATGAGAGCCAGTGTAAGACCA
* * *
132822865 TGTTTGGAACATGGCATCGATGATGTTGTGACT
64 TGTTTGGAACATGGCATCGATGATATTGAGACA
* *
132822898 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACATCATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATG
* * *
132822963 TCTGGGACATAGCATC-A-G-TATTGAGACGAGA
66 TTTGGAACATGGCATCGATGATATTGAGAC---A
* ** * * **
132822994 GCTAGTGTAAGAATATGTCTGGGACATGGCATCGGCCTTC-GCATGTTAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-ACATCATGAGAGCCAGTGTAAGACCAT
132823058 GTTTGGAACATGGCATCG
65 GTTTGGAACATGGCATCG
132823076 GCAATTCACC
Statistics
Matches: 148, Mismatches: 23, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
93 7 0.05
94 1 0.01
95 5 0.03
96 134 0.91
97 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCGATGATATTGAGACA
Found at i:132827719 original size:44 final size:44
Alignment explanation
Indices: 132827656--132827830 Score: 217
Period size: 44 Copynumber: 3.9 Consensus size: 44
132827646 TGTAACCCGC
*
132827656 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
*
132827700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* *** *
132827746 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCAT
*
132827793 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
132827831 GCCCAAATAT
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 41 0.37
46 33 0.29
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:132827821 original size:93 final size:91
Alignment explanation
Indices: 132827664--132827833 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
132827654 GCCCATAAGT
*
132827664 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
132827729 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
132827755 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
132827820 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
132827834 CAAATATCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:132830227 original size:15 final size:15
Alignment explanation
Indices: 132830205--132830252 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
132830195 AAGAAACCGA
132830205 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
132830220 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
132830234 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
132830250 ATA
1 ATA
132830253 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:132830237 original size:30 final size:28
Alignment explanation
Indices: 132830196--132830252 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
132830186 AAAGATAACA
*
132830196 AGAAACCGAATAAAGAAATCCAAGATAG
1 AGAAACCGAATAAAGAAACCCAAGATAG
132830224 AGAAATCCAGAATAAAGAAACCCAAGATA
1 AGAAA-CC-GAATAAAGAAACCCAAGATA
132830253 CGATACTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (28 bp):
AGAAACCGAATAAAGAAACCCAAGATAG
Found at i:132835530 original size:15 final size:13
Alignment explanation
Indices: 132835499--132835530 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
132835489 ACACACAGGC
132835499 GTGTGTCTTGGCA
1 GTGTGTCTTGGCA
*
132835512 GTGTGTCTTGGCC
1 GTGTGTCTTGGCA
132835525 GTGTGT
1 GTGTGT
132835531 AACACAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.03, C:0.16, G:0.41, T:0.41
Consensus pattern (13 bp):
GTGTGTCTTGGCA
Found at i:132838787 original size:14 final size:14
Alignment explanation
Indices: 132838768--132838794 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
132838758 ATTTATACAT
132838768 ATTTTTACCCCATG
1 ATTTTTACCCCATG
132838782 ATTTTTACCCCAT
1 ATTTTTACCCCAT
132838795 CGACAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.04, T:0.44
Consensus pattern (14 bp):
ATTTTTACCCCATG
Found at i:132850179 original size:42 final size:43
Alignment explanation
Indices: 132850079--132850241 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
132850069 AGCTCGTACA
* * *
132850079 ATGCCAACGTCCCA-AACGTGGTCTTACATG-TAATCAAATATCG
1 ATGCCAACGTCCTAGAA-GTGGTCTTACACGAAAATCAAATA-CG
132850122 ATGCC-ACTGTCCTAGATAG-GGTCTTACAC-AAAATCAAATACG
1 ATGCCAAC-GTCCTAGA-AGTGGTCTTACACGAAAATCAAATACG
* * *
132850164 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATTATAAGT-CG
1 ATGCCAACGTCCTAGAAGTGGTCTTACACGAAAATCA-AA-TACG
*
132850208 ATGCCAACGTCCCA-AACGTGGTCTTACACGAAAA
1 ATGCCAACGTCCTAGAA-GTGGTCTTACACGAAAA
132850242 CACATATCGG
Statistics
Matches: 101, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 36 0.36
44 35 0.35
45 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCTAGAAGTGGTCTTACACGAAAATCAAATACG
Found at i:132850227 original size:44 final size:42
Alignment explanation
Indices: 132850079--132850237 Score: 157
Period size: 44 Copynumber: 3.7 Consensus size: 42
132850069 AGCTCGTACA
*
132850079 ATGCCAACGTCCCAAACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATC-AA-ATCG
* *
132850122 ATGCC-ACTGTCCTAGATA-G-GGTCTTACAC-AAAATCAAATACG
1 ATGCCAAC-GTCCCA-A-ACGTGGTCTTACACGTAAATCAAAT-CG
* * *
132850164 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATTATAAGTCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATCA-AA-TCG
132850208 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAAACGTGGTCTTACACG
132850238 AAAACACATA
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 27 0.28
43 30 0.31
44 34 0.35
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATCAAATCG
Found at i:132852161 original size:40 final size:40
Alignment explanation
Indices: 132852063--132852281 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
132852053 CGAATGATGT
* * * * *
132852063 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
132852104 CCGGG-TCAATTCTCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
132852144 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
132852184 CCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
132852224 CCGGGCTAATTGCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
132852264 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
132852282 ACAATCGAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
40 128 0.84
41 24 0.16
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:132858053 original size:24 final size:24
Alignment explanation
Indices: 132858023--132858289 Score: 462
Period size: 24 Copynumber: 11.1 Consensus size: 24
132858013 GAATGTGACT
* *
132858023 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
132858047 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
132858071 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
132858095 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
132858119 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
132858143 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
132858167 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
132858191 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
132858215 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
132858239 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
132858263 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
132858287 ATA
1 ATA
132858290 TGGTCTTTGC
Statistics
Matches: 235, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 235 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:132866731 original size:39 final size:39
Alignment explanation
Indices: 132866679--132866813 Score: 141
Period size: 39 Copynumber: 3.4 Consensus size: 39
132866669 GGATATAACG
* * *
132866679 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTT-TAGTA
*
132866719 ACTCGC-CGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAAGCCC-GGTTTAGTA
* * *
132866758 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGG-TTTAGTA
*
132866797 ACTCGCACGAATGCCTT
1 ACTCGCACAAATGCCTT
132866814 GGATCCTAGT
Statistics
Matches: 81, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
38 4 0.05
39 52 0.64
40 25 0.31
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTTTAGTA
Found at i:132873092 original size:40 final size:40
Alignment explanation
Indices: 132873037--132873246 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
132873027 AACATTGGAA
132873037 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
132873077 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
132873117 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
132873157 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
132873196 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
132873237 CTATATCCGG
1 ATATATCCGG
132873247 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:132881203 original size:40 final size:40
Alignment explanation
Indices: 132881148--132881357 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
132881138 AACATTGGAA
132881148 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
132881188 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
132881228 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
132881268 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
132881307 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
132881348 CTATATCCGG
1 ATATATCCGG
132881358 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:132888286 original size:46 final size:46
Alignment explanation
Indices: 132888236--132888411 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
132888226 TGGTTGAGCA
132888236 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
132888282 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
132888327 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
132888375 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
132888412 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:132888392 original size:93 final size:93
Alignment explanation
Indices: 132888233--132888403 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
132888223 GGATGGTTGA
* *
132888233 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
132888298 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
132888326 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
132888391 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
132888404 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:132891340 original size:15 final size:15
Alignment explanation
Indices: 132891320--132891388 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
132891310 GTATCTTGGG
132891320 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
132891335 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
132891350 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
132891365 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
132891380 TTTCTTTAT
1 TTTCTTTAT
132891389 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:132891389 original size:30 final size:30
Alignment explanation
Indices: 132891311--132891398 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
132891301 CATAGTATCG
* * * *
132891311 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
132891341 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
132891371 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
132891399 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:132893880 original size:91 final size:93
Alignment explanation
Indices: 132893774--132893943 Score: 308
Period size: 91 Copynumber: 1.8 Consensus size: 93
132893764 CACTAGGATG
*
132893774 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
132893837 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
132893865 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
132893930 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
132893944 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 46 0.61
92 1 0.01
93 28 0.37
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:132893942 original size:46 final size:46
Alignment explanation
Indices: 132893779--132893951 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
132893769 GGATGGGCAT
*
132893779 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
132893823 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
132893868 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
132893916 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
132893952 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:132896885 original size:15 final size:15
Alignment explanation
Indices: 132896865--132896933 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
132896855 GTATCTTGGG
132896865 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
132896880 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
132896895 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
132896910 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
132896925 TTTCTTTAT
1 TTTCTTTAT
132896934 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:132896934 original size:30 final size:30
Alignment explanation
Indices: 132896856--132896943 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
132896846 CATAGTATCG
* * * *
132896856 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
132896886 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
132896916 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
132896944 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:132899379 original size:46 final size:46
Alignment explanation
Indices: 132899326--132899501 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
132899316 GATATTGGCA
132899326 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
132899372 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
132899419 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
132899465 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
132899502 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:132899431 original size:93 final size:93
Alignment explanation
Indices: 132899322--132899493 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
132899312 CTAGGATATT
* *
132899322 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
132899387 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
132899415 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
132899480 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
132899494 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:132903327 original size:135 final size:135
Alignment explanation
Indices: 132903057--132903306 Score: 349
Period size: 135 Copynumber: 1.9 Consensus size: 135
132903047 TGGGGGAGAG
* *
132903057 TTGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
1 TTGTGACAGCCCAAAAGTGACCATAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
* * * *
132903122 ATTATTTGAATATGATATTTATTGTCTAAAATATGTGAATATGAATGTGTAAAAGTTTTAAGCTT
66 ATTATTCGAACATAATATTTATTGTCTAAAATATGTGAAAATGAATGTGTAAAAGTTTTAAGCTT
132903187 CGATT
131 CGATT
* * * *
132903192 TTGTGACATCCCAAAATTGACCATAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGA
1 TTGTGACAGCCCAAAAGTGACCATAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACC-A
* * * * *
132903257 CA-TGTTCGAACGTAATATTTATTGTCTAGAATATGTGAAAATGCATGTGT
65 AATTATTCGAACATAATATTTATTGTCTAAAATATGTGAAAATGAATGTGT
132903307 GAATTTTGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
135 97 0.98
136 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (135 bp):
TTGTGACAGCCCAAAAGTGACCATAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAA
ATTATTCGAACATAATATTTATTGTCTAAAATATGTGAAAATGAATGTGTAAAAGTTTTAAGCTT
CGATT
Found at i:132904651 original size:29 final size:29
Alignment explanation
Indices: 132904618--132904749 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
132904608 GTGACGAGAT
*
132904618 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
132904647 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
132904676 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
132904705 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
132904734 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
132904750 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:132912464 original size:29 final size:29
Alignment explanation
Indices: 132912431--132912562 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
132912421 GTGACGAGAT
*
132912431 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
132912460 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
132912489 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
132912518 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
132912547 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
132912563 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:132914966 original size:40 final size:40
Alignment explanation
Indices: 132914881--132915031 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
132914871 AATTGAATGA
* * *
132914881 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
132914921 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
132914962 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
132915001 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
132915032 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:132915045 original size:40 final size:40
Alignment explanation
Indices: 132914918--132915047 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
132914908 ATGCTGGAAA
* * * *
132914918 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
132914958 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
132914998 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
132915038 TTATATCCGG
1 TTATATCCGG
132915048 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:132922916 original size:40 final size:40
Alignment explanation
Indices: 132922850--132922953 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
132922840 AAATTGAATG
* * *
132922850 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
132922889 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
*
132922929 ACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
132922954 TTTGTGCACA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:132937456 original size:29 final size:28
Alignment explanation
Indices: 132937424--132937526 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
132937414 GTGACGAGAT
* *
132937424 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
132937453 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
132937482 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
132937511 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
132937527 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:132945256 original size:29 final size:28
Alignment explanation
Indices: 132945224--132945326 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
132945214 GTGACGAGAT
* *
132945224 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
132945253 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
132945282 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
132945311 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
132945327 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:132947068 original size:69 final size:70
Alignment explanation
Indices: 132946936--132947068 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
132946926 TAGTTTATTA
* * * *
132946936 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
132947001 CTTAG
66 CTTAG
132947006 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
132947069 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:132948440 original size:47 final size:47
Alignment explanation
Indices: 132948389--132948683 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
132948379 ACAAGATATG
*
132948389 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
132948436 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
132948483 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
132948530 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
132948577 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
132948624 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
132948671 TAAATGTGATAAG
1 TATATGTGATAAG
132948684 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:132951342 original size:2 final size:2
Alignment explanation
Indices: 132951335--132951362 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
132951325 CGGCTCTAGC
132951335 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
132951363 GTGTTGCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:132952128 original size:41 final size:40
Alignment explanation
Indices: 132952071--132952249 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
132952061 CGAATGGTAT
* * *
132952071 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
132952112 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
132952152 CCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
132952192 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
132952232 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
132952250 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.76
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:132955633 original size:28 final size:28
Alignment explanation
Indices: 132955593--132955649 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
132955583 AATGTGAATT
132955593 CTGGTTGAGAGAAGTTAGCTTTTTGGGA
1 CTGGTTGAGAGAAGTTAGCTTTTTGGGA
132955621 CTGGTTGAGAGAAGTTAGCTTTTTGGGA
1 CTGGTTGAGAGAAGTTAGCTTTTTGGGA
132955649 C
1 C
132955650 ATGTGGTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.09, G:0.35, T:0.35
Consensus pattern (28 bp):
CTGGTTGAGAGAAGTTAGCTTTTTGGGA
Found at i:132964439 original size:27 final size:27
Alignment explanation
Indices: 132964406--132964602 Score: 236
Period size: 27 Copynumber: 7.4 Consensus size: 27
132964396 GGATAAGTTA
*
132964406 TAGAATTACCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
132964433 TAGAATTACCGAAATA--CTTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* **
132964458 TAAAATTATTGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
132964485 TAGAATTACCGAAATACCCCTGTTGGA
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
132964512 TAGAATTACCAAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
132964539 TAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
132964566 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
132964593 TAAAATTACC
1 TAGAATTACC
132964603 ATTTTGCCCC
Statistics
Matches: 145, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
25 21 0.14
27 124 0.86
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:132966336 original size:17 final size:18
Alignment explanation
Indices: 132966314--132966347 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
132966304 TGAAGCATAT
*
132966314 AGAAAGA-CAGAATTGTG
1 AGAAAGATCAAAATTGTG
132966331 AGAAAGATCAAAATTGT
1 AGAAAGATCAAAATTGT
132966348 TTTAGGAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.21
Consensus pattern (18 bp):
AGAAAGATCAAAATTGTG
Found at i:132969587 original size:39 final size:39
Alignment explanation
Indices: 132969469--132969651 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
132969459 TCGTTCAAAC
* * ** * **
132969469 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
132969509 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
132969549 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
132969588 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
132969627 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
132969652 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:132976999 original size:39 final size:39
Alignment explanation
Indices: 132976881--132977063 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
132976871 TCGTTCAAAC
* * ** * **
132976881 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
132976921 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
132976961 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
132977000 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
132977039 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
132977064 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:132980366 original size:27 final size:27
Alignment explanation
Indices: 132980333--132980505 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
132980323 TGGATAAGTT
* * *
132980333 GTAGAATTACCGAAATCCCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
132980360 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
132980387 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * **
132980414 GTAGAATTATCGAAATACCCTTGTAAC
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
132980441 ATAGAATTACCAAAATTCCTCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
132980468 GTAGAATTACTGAAATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
132980495 GTAAAATTACC
1 GTAGAATTACC
132980506 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:132980468 original size:81 final size:81
Alignment explanation
Indices: 132980333--132980505 Score: 229
Period size: 81 Copynumber: 2.1 Consensus size: 81
132980323 TGGATAAGTT
* ** * *
132980333 GTAGAATTACCGAAATCCCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTATAACATAGAATTACCAAAATACCCCTGTAGGGTAGAATTACT
132980398 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * * * *
132980414 GTAGAATTATCGAAATACCCTTGTAACATAGAATTACCAAAATTCCTCTGTAGGGTAGAATTACT
1 GTAGAATTACCGAAATACCCCTATAACATAGAATTACCAAAATACCCCTGTAGGGTAGAATTACT
* *
132980479 GAAATACCCTTGTGGG
66 GAAATACCCCTGTAGG
*
132980495 GTAAAATTACC
1 GTAGAATTACC
132980506 ATTTTGCCCC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTATAACATAGAATTACCAAAATACCCCTGTAGGGTAGAATTACT
GAAATACCCCTGTAGG
Found at i:132980550 original size:27 final size:26
Alignment explanation
Indices: 132980506--132980559 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
132980496 TAAAATTACC
132980506 ATTTTGCCCCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
132980533 ATTTTGCCCCTCGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
132980559 A
1 A
132980560 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:132981250 original size:2 final size:2
Alignment explanation
Indices: 132981243--132981280 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
132981233 GCTTCGCCAC
132981243 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
132981281 TTGTTCTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:132981315 original size:27 final size:26
Alignment explanation
Indices: 132981277--132981332 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
132981267 ATATATATAT
*
132981277 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGCCTAGCCACA
* * *
132981303 ATATCTGTATCTGGTGTCTTAGTCACA
1 ATATCTGT-TCTGGTGGCCTAGCCACA
132981330 ATA
1 ATA
132981333 ACTGGCAGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGCCTAGCCACA
Found at i:132983340 original size:2 final size:2
Alignment explanation
Indices: 132983333--132983369 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
132983323 CAATCACATT
132983333 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
132983370 GTATTATTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:132983635 original size:39 final size:39
Alignment explanation
Indices: 132983556--132983646 Score: 96
Period size: 39 Copynumber: 2.4 Consensus size: 39
132983546 ACTAATTACT
*
132983556 AGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAATACC
1 AGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATACC
* * * * *
132983594 AGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATATTTCC
1 AGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAATACC
*
132983633 AGCACGTAGCCTGC
1 AGCACGAAGCCTGC
132983647 AGACCTTAAG
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
38 10 0.23
39 33 0.77
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGAATTTAAACCCGGCATAATACC
Found at i:132983667 original size:78 final size:77
Alignment explanation
Indices: 132983581--132983744 Score: 197
Period size: 78 Copynumber: 2.1 Consensus size: 77
132983571 GAATTTAAAC
* * * * *
132983581 CCGGTATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCC
1 CCGGTATAATACCAGCAC-ATAGCCTGC-GGACCTTAAGCCCAGACATAATTCCAGCACATAGCC
132983644 TGCAGACCTTAAGT
64 TGCAGACCTTAAGT
* * *
132983658 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAGCACATAGCCTGCGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCT
*
132983723 GCGGACCTTAAGT
65 GCAGACCTTAAGT
132983736 CCGGATATA
1 CCGG-TATA
132983745 CTTCATCACT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 8 0.11
78 66 0.89
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (77 bp):
CCGGTATAATACCAGCACATAGCCTGCGGACCTTAAGCCCAGACATAATTCCAGCACATAGCCTG
CAGACCTTAAGT
Found at i:132983672 original size:39 final size:39
Alignment explanation
Indices: 132983601--132983744 Score: 200
Period size: 39 Copynumber: 3.7 Consensus size: 39
132983591 ACCAGCTCGA
* * * * *
132983601 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
132983640 AGCCTGCAGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
132983679 AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
132983718 AGCCTGCGGACCTTAAGTCCGGATATA
1 AGCCTGCGGACCTTAAGTCCGGATATA
132983745 CTTCATCACT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 2 0.02
39 91 0.98
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:132986753 original size:40 final size:40
Alignment explanation
Indices: 132986668--132986818 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
132986658 AATTGAATGA
* * *
132986668 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
132986708 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
132986749 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
132986788 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
132986819 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:132986832 original size:40 final size:40
Alignment explanation
Indices: 132986705--132986834 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
132986695 ATGCTGGAAA
* * * *
132986705 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
132986745 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
132986785 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
132986825 TTATATCCGG
1 TTATATCCGG
132986835 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:132988627 original size:40 final size:40
Alignment explanation
Indices: 132988572--132988734 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 40
132988562 TGAATGATAC
* * *
132988572 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
132988612 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
132988652 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
132988692 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
132988732 CCG
1 CCG
132988735 ATTAAATCCC
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:132990189 original size:31 final size:31
Alignment explanation
Indices: 132990136--132990218 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
132990126 CGCTTACAGT
132990136 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
132990166 AAAGGCTTCGGCCCATTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
132990197 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
132990219 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:132991110 original size:13 final size:13
Alignment explanation
Indices: 132991069--132991102 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
132991059 TAGCAGAAAA
132991069 TTATTGTTATTTTT
1 TTATT-TTATTTTT
132991083 TTATTTTATTTTT
1 TTATTTTATTTTT
132991096 TTATTTT
1 TTATTTT
132991103 TTTCTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:132992145 original size:42 final size:42
Alignment explanation
Indices: 132992086--132992173 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
132992076 TTTAAACTCT
132992086 GATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGTG
1 GATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGTG
132992128 GATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGTG
1 GATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGTG
132992170 GATG
1 GATG
132992174 CGAAGCTAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.32, T:0.19
Consensus pattern (42 bp):
GATGTTGGAAGGATCCCACATCGGGAAGCTAACATAAGAGTG
Found at i:132993826 original size:40 final size:39
Alignment explanation
Indices: 132993708--132993923 Score: 220
Period size: 40 Copynumber: 5.5 Consensus size: 39
132993698 AACCGAGCTT
* * * *
132993708 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAA-CACTAGCACAAATGC
* * * * * *
132993747 CTTCGGGTCTTAACCCAGATTTGGTA-ACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAT--AACACTAGCACAAATGC
* * * *
132993787 CTTCGGGTCTTAGCCCGGATATAACAATTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAAC-ACTAGCACAAATGC
* *
132993827 CTTCGGGTCTTAGCCCGGATATAACACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAACACTAGCACAAATGC
*
132993866 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAA-CACTAGCACAAATGC
132993906 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
132993924 GTATCATTCA
Statistics
Matches: 149, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 42 0.28
40 105 0.70
42 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAACACTAGCACAAATGC
Found at i:132996038 original size:27 final size:27
Alignment explanation
Indices: 132996001--132996066 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
132995991 ATTACCAAAG
132996001 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
132996028 TATCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
132996055 TACCCTCGATTT
1 TACCCTCGATTT
132996067 TGAAATTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:132996112 original size:27 final size:27
Alignment explanation
Indices: 132996082--132996196 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
132996072 TTACTGAAAC
*
132996082 ACCCCTA-TAGGGTAGAATTACCAAAAT
1 ACCCCTAGT-GGGTAAAATTACCAAAAT
**
132996109 ACCCCTAGTTTGTAAAATTACCAAAAT
1 ACCCCTAGTGGGTAAAATTACCAAAAT
* ** * *
132996136 ACCACTAGTTTGTGAAATTACCGAAAT
1 ACCCCTAGTGGGTAAAATTACCAAAAT
* **
132996163 ACCCTTTA-TTTGTAAAATTACCAAAAT
1 ACCC-CTAGTGGGTAAAATTACCAAAAT
132996190 ACCCCTA
1 ACCCCTA
132996197 ATTTACAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.03
27 70 0.93
28 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
ACCCCTAGTGGGTAAAATTACCAAAAT
Found at i:132996206 original size:27 final size:27
Alignment explanation
Indices: 132996097--132996200 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
132996087 TATAGGGTAG
*
132996097 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
132996124 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
132996151 AATTACCGAAATACCCTTTATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
132996178 AATTACCAAAATACCCCTAATTT
1 AATTACCAAAATACCCCTAATTT
132996201 ACAAAACTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:132996216 original size:54 final size:54
Alignment explanation
Indices: 132996117--132996298 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 54
132996107 ATACCCCTAG
*** * *
132996117 TTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTTTA
1 TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACAGAAATACCCTTGA
* * *
132996171 TTTGTAAAATTACCAAAATACCCCTAATTTACAAAACTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACAGAAATACCCTTGA
* * * * * *
132996225 CTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGG
1 -TTTGT-AAAATTACCA-AAATACCACTAGTTTACAAAATTACAGAAATACCCTTGA
* *
132996281 TTTGTAGATTTACCAAAA
1 TTTGTAAAATTACCAAAA
132996299 CACCCTTGTA
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
54 54 0.52
55 10 0.10
56 39 0.38
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACAGAAATACCCTTGA
Found at i:132996271 original size:27 final size:27
Alignment explanation
Indices: 132996232--132996283 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
132996222 TGACTTTCTA
132996232 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
132996259 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
132996284 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:132996401 original size:27 final size:27
Alignment explanation
Indices: 132996324--132996401 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
132996314 AAATGACTAA
* *
132996324 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
132996351 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
132996378 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
132996402 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:132997249 original size:26 final size:25
Alignment explanation
Indices: 132997210--132997280 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
132997200 AGGAAGTGCT
*
132997210 AAAAGGGCTATGCCCCCAGTTTA-CA
1 AAAAGGGCTTTG-CCCCAGTTTATCA
* *
132997235 GAAAAGGGCTTTGCCCTAATTTATCA
1 -AAAAGGGCTTTGCCCCAGTTTATCA
132997261 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
132997281 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
25 26 0.67
26 13 0.33
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:132997293 original size:24 final size:24
Alignment explanation
Indices: 132997261--132997307 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
132997251 TAATTTATCA
**
132997261 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
132997284 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
132997308 ATGATAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:132997553 original size:31 final size:31
Alignment explanation
Indices: 132997500--132997582 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
132997490 CGCTTACAGT
132997500 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
132997530 AAAGGCTTCGGCCCATTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
132997561 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
132997583 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:133003010 original size:40 final size:40
Alignment explanation
Indices: 133002966--133003113 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 40
133002956 ATAACCAAAA
* * *** *
133002966 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
133003006 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
133003046 GCACGAA-TGCCTTTGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
133003086 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
133003114 GTATCATTCA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:133005763 original size:46 final size:47
Alignment explanation
Indices: 133005708--133005842 Score: 179
Period size: 46 Copynumber: 2.9 Consensus size: 47
133005698 TAGGATGGTT
133005708 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-C
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAC
* * *
133005754 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--AC
*
133005800 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
133005843 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
43 4 0.05
45 2 0.03
46 35 0.47
47 31 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (47 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAC
Found at i:133008833 original size:15 final size:15
Alignment explanation
Indices: 133008794--133008872 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
133008784 GTATCTTGGG
*
133008794 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
133008809 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
133008824 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
133008838 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
133008853 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
133008867 TTTCTT
1 TTTCTT
133008873 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:133008857 original size:29 final size:29
Alignment explanation
Indices: 133008785--133008871 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
133008775 CATAGTATCG
* * * *
133008785 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
133008815 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
133008844 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
133008872 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:133011278 original size:46 final size:48
Alignment explanation
Indices: 133011224--133011357 Score: 179
Period size: 46 Copynumber: 2.9 Consensus size: 48
133011214 TAGGATGGTT
133011224 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACGA
* * * *
133011271 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG--ACGA
133011317 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
133011358 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.05
45 2 0.03
46 33 0.45
47 31 0.42
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (48 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGACGA
Found at i:133019345 original size:40 final size:40
Alignment explanation
Indices: 133019285--133019445 Score: 166
Period size: 40 Copynumber: 4.0 Consensus size: 40
133019275 CGGGATTTAA
* ** *
133019285 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
133019325 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
133019365 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
133019405 CCGGATATAATC-ACTAGCATAAATGCCTTC-GGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
133019444 CC
1 CC
133019446 AGGTATCATT
Statistics
Matches: 102, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
39 12 0.12
40 87 0.85
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Done.