Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 431 of 770
Found at i:133019432 original size:80 final size:79
Alignment explanation
Indices: 133019285--133019445 Score: 189
Period size: 80 Copynumber: 2.0 Consensus size: 79
133019275 CGGGATTTAA
* * ** * *
133019285 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
133019350 CCTTCGGGTCTTAGC
66 CCTTC-GGACTTAGC
** * * *
133019365 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
133019429 GCCTTCGGACTTAGC
65 GCCTTCGGACTTAGC
133019444 CC
1 CC
133019446 AGGTATCATT
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 10 0.15
80 56 0.82
81 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGACTTAGC
Found at i:133027975 original size:44 final size:44
Alignment explanation
Indices: 133027864--133027972 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
133027854 GTGCCACTAT
* * * * *
133027864 CCTAGACAGGGTCTTACACGAAA--TCAAATATGATGCCGATGC
1 CCTAGACAAGGTCTTACAAGAAATCTCAAATACGATGCCAACGC
* *
133027906 CCCAGACAAGGTCTTACATGTAAATCTCAAAT-CGATGCCAACGC
1 CCTAGACAAGGTCTTACAAG-AAATCTCAAATACGATGCCAACGC
*
133027950 CCTAGACATGGTCTTACAAGAAA
1 CCTAGACAAGGTCTTACAAGAAA
133027973 ATCACATATC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 17 0.31
43 6 0.11
44 26 0.47
45 6 0.11
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (44 bp):
CCTAGACAAGGTCTTACAAGAAATCTCAAATACGATGCCAACGC
Found at i:133034651 original size:41 final size:41
Alignment explanation
Indices: 133034606--133034723 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
133034596 TGAAAGATAA
133034606 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
133034647 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
133034677 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
133034718 ATGTAG
1 ATGTAG
133034724 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:133034662 original size:71 final size:71
Alignment explanation
Indices: 133034574--133034737 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
133034564 GAGATGTATC
133034574 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
133034639 AGGACA
66 AGGACA
133034645 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
133034710 AGGACA
66 AGGACA
133034716 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
133034738 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:133042027 original size:41 final size:41
Alignment explanation
Indices: 133041982--133042099 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
133041972 TGAAAGATAA
133041982 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
133042023 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
133042053 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
133042094 ATGTAG
1 ATGTAG
133042100 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:133042038 original size:71 final size:71
Alignment explanation
Indices: 133041950--133042113 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
133041940 GAGATGTATC
133041950 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
133042015 AGGACA
66 AGGACA
133042021 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
133042086 AGGACA
66 AGGACA
133042092 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
133042114 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:133050505 original size:20 final size:20
Alignment explanation
Indices: 133050480--133050518 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
133050470 TAAATATGGT
133050480 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
133050500 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
133050519 GGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:133050596 original size:24 final size:24
Alignment explanation
Indices: 133050569--133050687 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
133050559 GAGGAAGTGA
*
133050569 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
133050593 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
133050616 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
133050640 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
133050664 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
133050688 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:133050638 original size:47 final size:48
Alignment explanation
Indices: 133050569--133050687 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
133050559 GAGGAAGTGA
133050569 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
133050616 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
133050664 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
133050688 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:133050913 original size:31 final size:31
Alignment explanation
Indices: 133050878--133050972 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
133050868 CGTTTACAGT
133050878 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
133050909 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
133050940 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
133050971 AA
1 AA
133050973 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:133052792 original size:29 final size:29
Alignment explanation
Indices: 133052758--133052912 Score: 153
Period size: 29 Copynumber: 5.6 Consensus size: 29
133052748 TACTCGATTT
** * *
133052758 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
133052787 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
133052816 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
133052845 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
133052874 CGCACACTTAGTGCC--A-A--TCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
133052898 CGCACAC-TAGTGCCA
1 CGCACACTTAGTGCCA
133052913 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.06
24 14 0.13
26 1 0.01
27 1 0.01
28 2 0.02
29 84 0.77
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:133060715 original size:29 final size:29
Alignment explanation
Indices: 133060681--133060841 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
133060671 TACTCGATTT
** * *
133060681 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
133060710 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
133060739 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
133060768 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
133060797 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
133060826 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
133060842 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:133071031 original size:42 final size:42
Alignment explanation
Indices: 133070984--133071069 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
133070974 TGGAAACTTT
133070984 CCAACACTTAGAAAAATTTTCCTAAAAACAGGGGTCACATGC
1 CCAACACTTAGAAAAATTTTCCTAAAAACAGGGGTCACATGC
** *
133071026 CCAACACTTAGAAATTTTTTCCTAAAAATAGGGGTCACATGC
1 CCAACACTTAGAAAAATTTTCCTAAAAACAGGGGTCACATGC
133071068 CC
1 CC
133071070 GTGTGGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (42 bp):
CCAACACTTAGAAAAATTTTCCTAAAAACAGGGGTCACATGC
Found at i:133072307 original size:42 final size:42
Alignment explanation
Indices: 133072178--133072344 Score: 135
Period size: 42 Copynumber: 4.0 Consensus size: 42
133072168 AATCATACCA
* * * ** *
133072178 ATGCCATATCCCAGATATGATCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
* * * *
133072220 ATGGCAATAGT-CTAG-CTATGGTCTTACACG-ATTCTCATATCG
1 AT-GCCATA-TCCCAGAC-ATGGTCTTACACGAAATCTCATAACG
* * *
133072262 ATGCCATGTCCTAGACATGGTCCTACACGAAATCTCATAACG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
* *
133072304 ATGCCATATCCCAGATATTGTCTTACACGTAAA-CTCATAAC
1 ATGCCATATCCCAGACATGGTCTTACACG-AAATCTCATAAC
133072345 CCTAATGCAT
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
40 1 0.01
41 20 0.20
42 57 0.56
43 22 0.22
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
Found at i:133083966 original size:49 final size:49
Alignment explanation
Indices: 133083913--133084137 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
133083903 CTGGTACGCA
* * * *
133083913 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
133083962 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** * * *
133084011 TAGTGGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * * *
133084061 TAGTAGCATGCACTTAGTACTACACACGTGATCACAGTTTTCTGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
133084112 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
133084138 TGCGACCTCA
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
49 76 0.51
50 39 0.26
51 34 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:133084088 original size:99 final size:100
Alignment explanation
Indices: 133083906--133084144 Score: 293
Period size: 99 Copynumber: 2.4 Consensus size: 100
133083896 AAGCTATCTG
* * * ** * * *
133083906 GTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACAAGTAGTAGCAT
133083971 GCACTTAGTACTACACACGTGA-C-CAATTATCCA
66 GCACTTAGTACTACACACGTGATCACAATTATCCA
* * * *
133084004 GTACACGTAGTGGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACAAGTAGTAGCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACAAGTAGTAGCA
* * **
133084069 TGCACTTAGTACTACACACGTGATCACAGTTTTCTG
65 TGCACTTAGTACTACACACGTGATCACAATTATCCA
* *
133084105 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
133084145 TCACAATAGA
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 34 0.29
99 41 0.35
100 1 0.01
101 41 0.35
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (100 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACAAGTAGTAGCAT
GCACTTAGTACTACACACGTGATCACAATTATCCA
Found at i:133091414 original size:21 final size:21
Alignment explanation
Indices: 133091388--133091427 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
133091378 GATTTTACGC
*
133091388 GATGAATGTGAATGTGTATGT
1 GATGAATGTGAAAGTGTATGT
133091409 GATGAATGTGAAAGTGTAT
1 GATGAATGTGAAAGTGTAT
133091428 ATATATGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (21 bp):
GATGAATGTGAAAGTGTATGT
Found at i:133091434 original size:27 final size:27
Alignment explanation
Indices: 133091404--133091498 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 27
133091394 TGTGAATGTG
133091404 TATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATGAATGTGAAAGTGTATATA
* *
133091431 TATGTGATATATATGTGATAAG-GCCTA-ATGGCC
1 TATGTGAT-GA-ATGTGA-AAGTG--TATAT---A
*
133091464 GATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATGAATGTGAAAGTGTATATA
133091491 TATGTGAT
1 TATGTGAT
133091499 AAGGCCTAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 20
0.67 0.08 0.26
Matches are distributed among these distances:
27 15 0.29
28 1 0.02
29 9 0.17
30 10 0.19
31 9 0.17
32 1 0.02
33 7 0.13
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (27 bp):
TATGTGATGAATGTGAAAGTGTATATA
Found at i:133091442 original size:11 final size:11
Alignment explanation
Indices: 133091426--133091450 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
133091416 GTGAAAGTGT
133091426 ATATATATGTG
1 ATATATATGTG
133091437 ATATATATGTG
1 ATATATATGTG
133091448 ATA
1 ATA
133091451 AGGCCTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (11 bp):
ATATATATGTG
Found at i:133091474 original size:60 final size:58
Alignment explanation
Indices: 133091405--133091540 Score: 191
Period size: 49 Copynumber: 2.5 Consensus size: 58
133091395 GTGAATGTGT
133091405 ATGTGATGAATGTGAAAGTGTATATATATGTGATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAT-TGT-ATATATATGTGATAAGGCCTAATGGCCG
133091465 ATGTGATGAATGTGAAA--G-------TGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATTGTATATATATGTGATAAGGCCTAATGGCCG
133091514 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
133091541 GTGATAAGGC
Statistics
Matches: 67, Mismatches: 0, Indels: 20
0.77 0.00 0.23
Matches are distributed among these distances:
49 45 0.67
50 3 0.04
51 1 0.01
58 1 0.01
60 17 0.25
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (58 bp):
ATGTGATGAATGTGAAAGTGTATATATTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:133091492 original size:49 final size:48
Alignment explanation
Indices: 133091434--133091575 Score: 268
Period size: 49 Copynumber: 3.0 Consensus size: 48
133091424 GTATATATAT
133091434 GTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
133091482 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
133091531 GTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
133091576 GGTGATGAAT
Statistics
Matches: 93, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
47 42 0.45
48 3 0.03
49 48 0.52
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
GTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:133091582 original size:14 final size:14
Alignment explanation
Indices: 133091563--133091589 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
133091553 AATGGCCGAT
133091563 GTGATGAATGTGAG
1 GTGATGAATGTGAG
133091577 GTGATGAATGTGA
1 GTGATGAATGTGA
133091590 AAGTGTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.41, T:0.30
Consensus pattern (14 bp):
GTGATGAATGTGAG
Found at i:133091584 original size:61 final size:61
Alignment explanation
Indices: 133091516--133091636 Score: 188
Period size: 61 Copynumber: 2.0 Consensus size: 61
133091506 AATGGCCGAT
* * *
133091516 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAG
* * *
133091577 GTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
133091637 AAGTGTATTG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.30, C:0.07, G:0.35, T:0.28
Consensus pattern (61 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAG
Found at i:133093479 original size:40 final size:39
Alignment explanation
Indices: 133093311--133093481 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
133093301 AGAAATTGAA
* *
133093311 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
133093351 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
133093391 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
133093431 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
133093471 TGATATCCGGG
1 TGATATCCGGG
133093482 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:133101489 original size:40 final size:39
Alignment explanation
Indices: 133101321--133101491 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
133101311 AGAAATTGAA
* *
133101321 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
133101361 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
133101401 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
133101441 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
133101481 TGATATCCGGG
1 TGATATCCGGG
133101492 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:133107164 original size:32 final size:32
Alignment explanation
Indices: 133107097--133107275 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
133107087 CCCGAGGTGC
* *
133107097 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
133107130 ACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
133107162 ACATTTTCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* * *
133107194 ACA-ATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
133107225 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
133107257 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
133107276 CACCCTTTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
31 26 0.20
32 88 0.68
33 15 0.12
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:133107220 original size:63 final size:64
Alignment explanation
Indices: 133107097--133107275 Score: 216
Period size: 63 Copynumber: 2.8 Consensus size: 64
133107087 CCCGAGGTGC
* * * * * *
133107097 ACATTCCCTTTTCAAATGGTACACACAAAGTGTACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGT-GCACACACAAAGTGTACATATACTTTTCAAGTGTACACACAAAGGGT
* * *
133107162 ACATTTTCTTTTCAAGTGCACACACAAAGTGTACA-ATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGCACACACAAAGTGTACATATACTTTTCAAGTGTACACACAAAGGGT
* * * * *
133107225 ACGTTTCCTTTTCAAGTGTACACACAAAGTGTACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGCACACACAAAGTGTACATATACTTTTCAAGTGT
133107276 CACCCTTTTA
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
63 54 0.55
64 30 0.31
65 14 0.14
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (64 bp):
ACATTTCCTTTTCAAGTGCACACACAAAGTGTACATATACTTTTCAAGTGTACACACAAAGGGT
Found at i:133118485 original size:30 final size:29
Alignment explanation
Indices: 133118446--133118502 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
133118436 AATCCATGTT
133118446 ATTTTATACATACAAT-TTTTTTAAAATTA
1 ATTTTATACAT-CAATATTTTTTAAAATTA
*
133118475 ATTTATATACATCATTATTTTTTAAAAT
1 ATTT-TATACATCAATATTTTTTAAAAT
133118503 CTATTACGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (29 bp):
ATTTTATACATCAATATTTTTTAAAATTA
Found at i:133120066 original size:25 final size:27
Alignment explanation
Indices: 133120029--133120082 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
133120019 TCAAACATGC
133120029 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
133120055 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
133120081 AT
1 AT
133120083 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:133121600 original size:26 final size:26
Alignment explanation
Indices: 133121564--133121673 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
133121554 CATGAATTTC
*
133121564 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
133121590 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
133121616 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
133121642 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
133121668 TTATCA
1 TTATCA
133121674 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:133125656 original size:11 final size:10
Alignment explanation
Indices: 133125639--133125687 Score: 71
Period size: 11 Copynumber: 4.7 Consensus size: 10
133125629 GAAACCTCAT
133125639 AAAAATTTTC
1 AAAAATTTTC
133125649 ACAAAATTTTC
1 A-AAAATTTTC
*
133125660 AAAATTTTTC
1 AAAAATTTTC
133125670 ACAAAATTTTC
1 A-AAAATTTTC
133125681 AAAAATT
1 AAAAATT
133125688 CACTTTTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 16 0.46
11 19 0.54
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAAATTTTC
Found at i:133125668 original size:21 final size:21
Alignment explanation
Indices: 133125639--133125687 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
133125629 GAAACCTCAT
133125639 AAAAATTTTCACAAAATTTTC
1 AAAAATTTTCACAAAATTTTC
*
133125660 AAAATTTTTCACAAAATTTTC
1 AAAAATTTTCACAAAATTTTC
133125681 AAAAATT
1 AAAAATT
133125688 CACTTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAAATTTTCACAAAATTTTC
Found at i:133126145 original size:33 final size:34
Alignment explanation
Indices: 133126108--133126176 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
133126098 CCTATTTCTC
133126108 ACCCAACTTT-ACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
133126141 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
1 ACCCAACTTTAACCATTTTCCTACATGAAAACTT
133126175 AC
1 AC
133126177 ATGTATATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 10 0.29
34 25 0.71
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.32
Consensus pattern (34 bp):
ACCCAACTTTAACCATTTTCCTACATGAAAACTT
Found at i:133126908 original size:32 final size:32
Alignment explanation
Indices: 133126841--133126910 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
133126831 CCCGAGGTGC
*
133126841 ACATTCCCTTTTCAAATGGTACACACAAAATGT
1 ACATTCCCTTTTC-AATGGTACACACAAAAGGT
* * *
133126874 ACATTTCCTTTTC-ATGTGTACATACAAGAGGT
1 ACATTCCCTTTTCAATG-GTACACACAAAAGGT
133126906 ACATT
1 ACATT
133126911 GTAACATCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 3 0.09
32 17 0.53
33 12 0.38
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (32 bp):
ACATTCCCTTTTCAATGGTACACACAAAAGGT
Found at i:133128722 original size:20 final size:20
Alignment explanation
Indices: 133128697--133128755 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
133128687 TAAATATGGT
133128697 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
133128717 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
133128737 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
133128756 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:133128737 original size:11 final size:11
Alignment explanation
Indices: 133128701--133128755 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
133128691 TATGGTATGT
133128701 ATGATATGCAC
1 ATGATATGCAC
* *
133128712 ATGAAATG--T
1 ATGATATGCAC
133128721 ATGATATGCAC
1 ATGATATGCAC
*
133128732 ATGATATG--T
1 ATGATATGCAC
133128741 ATGATATGCAC
1 ATGATATGCAC
133128752 ATGA
1 ATGA
133128756 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:133128860 original size:23 final size:24
Alignment explanation
Indices: 133128806--133128924 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
133128796 GAGGAAGTGA
*
133128806 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
133128830 AAAAGGGCTTATGCCCTAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
133128853 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
133128877 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
133128901 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
133128925 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
23 21 0.25
24 52 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:133128875 original size:47 final size:48
Alignment explanation
Indices: 133128806--133128924 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 48
133128796 GAGGAAGTGA
*
133128806 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
133128853 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
133128901 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
133128925 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
47 42 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:133129151 original size:31 final size:31
Alignment explanation
Indices: 133129116--133129210 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
133129106 CGTTTACAGT
133129116 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
133129147 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
133129178 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
133129209 AA
1 AA
133129211 TATAAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:133129966 original size:32 final size:32
Alignment explanation
Indices: 133129925--133130128 Score: 309
Period size: 32 Copynumber: 6.4 Consensus size: 32
133129915 TACATACATT
*
133129925 TCCTTTTCAAGTGTACACACAAAGTGTAAAAA
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
*
133129957 TCCTTTTCAAGTGTACACACAAAGTGTAAAAA
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
* **
133129989 TCCTTTTCAAGTGTACATACAAAGTGTACATT
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
*
133130021 TTCTTTTCAAGTGTACACACAAAGTGTACAAA
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
* *
133130053 TCTTTTTCTAGTGTACACACAAAGTGTACAAA
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
***
133130085 TCCTTTTCAAGTGTACACACAAAGTGTACGTT
1 TCCTTTTCAAGTGTACACACAAAGTGTACAAA
133130117 TCCTTTTCAAGT
1 TCCTTTTCAAGT
133130129 ATCACCCTTT
Statistics
Matches: 156, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 156 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (32 bp):
TCCTTTTCAAGTGTACACACAAAGTGTACAAA
Found at i:133130086 original size:96 final size:96
Alignment explanation
Indices: 133129919--133130128 Score: 357
Period size: 96 Copynumber: 2.2 Consensus size: 96
133129909 GGGTGTTACA
133129919 TACATTTCCTTTTCAAGTGTACACACAAAGTGTAAAAATCCTTTTCAAGTGTACACACAAAGTGT
1 TACATTTCCTTTTCAAGTGTACACACAAAGTGTAAAAATCCTTTTCAAGTGTACACACAAAGTGT
*
133129984 AAAAATCCTTTTCAAGTGTACATACAAAGTG
66 AAAAATCCTTTTCAAGTGTACACACAAAGTG
* * * *
133130015 TACATTTTCTTTTCAAGTGTACACACAAAGTGTACAAATCTTTTTCTAGTGTACACACAAAGTGT
1 TACATTTCCTTTTCAAGTGTACACACAAAGTGTAAAAATCCTTTTCAAGTGTACACACAAAGTGT
*
133130080 ACAAATCCTTTTCAAGTGTACACACAAAGTG
66 AAAAATCCTTTTCAAGTGTACACACAAAGTG
*
133130111 TACGTTTCCTTTTCAAGT
1 TACATTTCCTTTTCAAGT
133130129 ATCACCCTTT
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 106 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (96 bp):
TACATTTCCTTTTCAAGTGTACACACAAAGTGTAAAAATCCTTTTCAAGTGTACACACAAAGTGT
AAAAATCCTTTTCAAGTGTACACACAAAGTG
Found at i:133137333 original size:20 final size:20
Alignment explanation
Indices: 133137305--133137342 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
133137295 CTAGGAACTA
133137305 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
133137325 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
133137343 TATATGTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:133137484 original size:72 final size:72
Alignment explanation
Indices: 133137360--133137571 Score: 248
Period size: 72 Copynumber: 2.9 Consensus size: 72
133137350 GATACATGTA
* * * * *
133137360 ATGTGGGTCTGGGTGCTGACTTTGTGATCAGGCCCGTGAGTAACTCGTTGAGCGAGCATTTCATG
1 ATGTGGGTCTAGGTGCTGACTTTGTGA-CAGGCCCGTGAGTAGCTCGATGAGCAAGCATTACATG
*
133137425 TTAATGCT
65 ATAATGCT
* * * **
133137433 ATGTGGGTCTAGGTACTGACTTCGTGACAGGCCCTTGAGTAGCTCGATGAGCAAGTGTTACATGA
1 ATGTGGGTCTAGGTGCTGACTTTGTGACAGGCCCGTGAGTAGCTCGATGAGCAAGCATTACATGA
133137498 TAATGCT
66 TAATGCT
* * * *
133137505 ATGTGGGTCTAGGTGCTGACTTTATGAATAGGCCCGTGAGTAGCTC-A-AATGCGAGCATTACAT
1 ATGTGGGTCTAGGTGCTGACTTTGTG-ACAGGCCCGTGAGTAGCTCGATGA-GCAAGCATTACAT
133137568 GATA
64 GATA
133137572 TGAGGTAGCT
Statistics
Matches: 117, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
71 1 0.01
72 75 0.64
73 41 0.35
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
ATGTGGGTCTAGGTGCTGACTTTGTGACAGGCCCGTGAGTAGCTCGATGAGCAAGCATTACATGA
TAATGCT
Found at i:133142082 original size:7 final size:7
Alignment explanation
Indices: 133142070--133142096 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
133142060 AAATTAAAAA
133142070 AATAAAT
1 AATAAAT
133142077 AATAAAT
1 AATAAAT
133142084 AATAAAT
1 AATAAAT
133142091 AATAAA
1 AATAAA
133142097 ATAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AATAAAT
Found at i:133142082 original size:15 final size:15
Alignment explanation
Indices: 133142064--133142120 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 15
133142054 AAAGCTAAAT
133142064 TAAAAAAATAAATAA
1 TAAAAAAATAAATAA
*
133142079 T-AAATAATAAATAA
1 TAAAAAAATAAATAA
133142093 TAAAATAAAATAAAATAA
1 T-AAA-AAAAT-AAATAA
*
133142111 -AATAAAATAA
1 TAAAAAAATAA
133142121 TATCTTCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
14 15 0.43
15 6 0.17
16 4 0.11
17 4 0.11
18 6 0.17
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAAAAAATAAATAA
Found at i:133142094 original size:10 final size:9
Alignment explanation
Indices: 133142059--133142120 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 9
133142049 AGGCTAAAGC
*
133142059 TAAATTAAA
1 TAAAATAAA
133142068 -AAAATAAA
1 TAAAATAAA
133142076 T--AATAAA
1 TAAAATAAA
133142083 TAATAA-ATAA
1 TAA-AATA-AA
133142093 TAAAATAAAA
1 TAAAAT-AAA
133142103 TAAAATAAAA
1 TAAAAT-AAA
133142113 TAAAATAA
1 TAAAATAA
133142121 TATCTTCTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
7 7 0.16
8 7 0.16
9 5 0.11
10 25 0.56
11 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAATAAA
Found at i:133142101 original size:5 final size:5
Alignment explanation
Indices: 133142091--133142120 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
133142081 AATAATAAAT
133142091 AATAA AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA
133142121 TATCTTCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:133144268 original size:2 final size:2
Alignment explanation
Indices: 133144261--133144291 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
133144251 TGACCACATA
133144261 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
133144292 AGTTGACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:133150580 original size:46 final size:46
Alignment explanation
Indices: 133150527--133150702 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
133150517 TATTTGGGCA
133150527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
133150573 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
133150620 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
133150666 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
133150703 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:133150682 original size:93 final size:93
Alignment explanation
Indices: 133150523--133150694 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
133150513 GGGATATTTG
* *
133150523 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
133150588 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
133150616 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
133150681 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
133150695 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:133153677 original size:15 final size:15
Alignment explanation
Indices: 133153657--133153725 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
133153647 GTATCTTGGG
133153657 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
133153672 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
133153687 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
133153702 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
133153717 TTTCTTTAT
1 TTTCTTTAT
133153726 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:133153726 original size:30 final size:30
Alignment explanation
Indices: 133153648--133153735 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
133153638 CATAGTATCG
* * * *
133153648 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
133153678 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
133153708 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
133153736 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:133156168 original size:46 final size:46
Alignment explanation
Indices: 133156118--133156293 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
133156108 TATTTGGGCA
133156118 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
133156164 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
133156211 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
133156257 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
133156294 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:133156273 original size:93 final size:93
Alignment explanation
Indices: 133156114--133156285 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
133156104 TGGATATTTG
* *
133156114 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
133156179 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
133156207 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
133156272 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
133156286 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:133159318 original size:21 final size:21
Alignment explanation
Indices: 133159294--133159333 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
133159284 TTTTTTGATT
*
133159294 TTTTGATT-TTATTTTTTTAAA
1 TTTT-ATTATTATTTATTTAAA
133159315 TTTTATTATTATTTATTTA
1 TTTTATTATTATTTATTTA
133159334 CTTAGGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTTATTATTATTTATTTAAA
Found at i:133159557 original size:116 final size:117
Alignment explanation
Indices: 133159437--133159664 Score: 359
Period size: 116 Copynumber: 2.0 Consensus size: 117
133159427 TATTTTCGAT
*
133159437 TAGCGGAGTTTTACCCAACATGTCACACAACCTTTTGACGCGAAATAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAATAGAATGACAACCCAAGCAC
* *
133159502 CCTA-CCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
**** *
133159553 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAATAGAATGACAACCCAAGCAC
**
133159618 CCTACCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
133159665 ATGGAAAACA
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
116 63 0.62
117 38 0.38
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (117 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAATAGAATGACAACCCAAGCAC
CCTACCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:133160395 original size:43 final size:42
Alignment explanation
Indices: 133160326--133160416 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 42
133160316 TGAAAAGGGG
* * *
133160326 TGTTTGGCTGCAGGTTTTGGGGATTCTAAGGCTAGAATAGGAC
1 TGTTTGGCTGCAGGATGTGGGGATTCT-AGGCTAGAATAGAAC
* * *
133160369 TGTTTGGCTGCAGGGATGT-GGTATTCTGGGCTGGAATAGAAC
1 TGTTTGGCTGCA-GGATGTGGGGATTCTAGGCTAGAATAGAAC
133160411 TGTTTG
1 TGTTTG
133160417 ACAGCATGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 18 0.44
43 19 0.46
44 4 0.10
ACGTcount: A:0.19, C:0.11, G:0.36, T:0.34
Consensus pattern (42 bp):
TGTTTGGCTGCAGGATGTGGGGATTCTAGGCTAGAATAGAAC
Found at i:133160531 original size:23 final size:23
Alignment explanation
Indices: 133160499--133160571 Score: 69
Period size: 26 Copynumber: 3.0 Consensus size: 23
133160489 TAGATGGAAG
*
133160499 AAGAGAAATATAAAATAAAAATAA
1 AAGA-AAATATAAAATAAAAAGAA
*
133160523 AAGAAAATAATAAATAATAAAAGGAA
1 AAGAAAAT-AT-AA-AATAAAAAGAA
133160549 AA-AATAA-ATAAAATAAAAAGAA
1 AAGAA-AATATAAAATAAAAAGAA
133160571 A
1 A
133160572 GACTGGGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
22 11 0.26
23 6 0.14
24 8 0.19
25 4 0.10
26 13 0.31
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (23 bp):
AAGAAAATATAAAATAAAAAGAA
Found at i:133160543 original size:20 final size:20
Alignment explanation
Indices: 133160510--133160559 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
133160500 AGAGAAATAT
133160510 AAAATAAA-AATAAAA-GAA
1 AAAATAAATAATAAAAGGAA
133160528 AATAATAAATAATAAAAGGAA
1 AA-AATAAATAATAAAAGGAA
133160549 AAAATAAATAA
1 AAAATAAATAA
133160560 AATAAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.07
19 6 0.21
20 16 0.55
21 5 0.17
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (20 bp):
AAAATAAATAATAAAAGGAA
Found at i:133160566 original size:16 final size:16
Alignment explanation
Indices: 133160508--133160567 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
133160498 GAAGAGAAAT
133160508 ATAAAAT-AAAAATAAA
1 ATAAAATAAAAAAT-AA
* *
133160524 AGAAAATAATAAAT-A
1 ATAAAATAAAAAATAA
*
133160539 ATAAAAGGAAAAAATAA
1 ATAAAA-TAAAAAATAA
133160556 ATAAAATAAAAA
1 ATAAAATAAAAA
133160568 GAAAGACTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 6 0.17
16 17 0.49
17 12 0.34
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (16 bp):
ATAAAATAAAAAATAA
Found at i:133166774 original size:58 final size:59
Alignment explanation
Indices: 133166655--133166775 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 59
133166645 CCCTCCCCAA
* * * **
133166655 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGGCTGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAACCG
** *
133166714 TCCC-AAAGCTAGAATTCAGATACCATTGTATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAACCG
133166772 TCCC
1 TCCC
133166776 TGTCCCTCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
58 50 0.93
59 4 0.07
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCATTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:133167584 original size:43 final size:43
Alignment explanation
Indices: 133167496--133168666 Score: 1425
Period size: 43 Copynumber: 27.9 Consensus size: 43
133167486 TGGATATGCA
* * *
133167496 GGAG-CTCGGACACCATCGGCAACCTA-GCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167537 GGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167580 GGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167623 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCAGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133167665 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167707 GGAACCTC-GG-ACCATCGGCAACCTAGGACCCTGGTCGCGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133167748 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167791 AGAGCCTCGGGCACCATCGACAACCTAGGCCCCTAGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133167834 GGAGCCTCAGACACCATTGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*** * *
133167876 GGAG-CTCAAACACCATTGGC-ACATAGGCCCCTGGTCGTGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133167916 GGAACCTCGGG-ACCATCGGCAACCTAGGACCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133167958 GGAGCCTCGAGCACCATCGGCAACCTAGG-CCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
133168000 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133168042 AGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133168085 AGAGCCTC--GAACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* ** *
133168125 GGAGCCTCGGGCACC-TCGGC-ACCTTGGTGCTTGGAT-GTGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
*
133168165 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCT-GTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133168207 GGAGCCTTGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133168250 AGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
133168293 AGAGCCT-TGGAACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133168334 GGAGCCTCGGGCACCATCGGAAACCTAGG-CCTTGGTCGTACG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133168376 GGAGCCTCAGACACCATCGG-AACCTAGG-CCCTGGTCGTGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
133168416 GGAG-CTC-GACACCATCAGCAACCTAGGCCCTTGGTCGTGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT-GCG
* *
133168458 GGAACCTCGGG-ACCATCGGCAACCTAGGACCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133168500 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133168543 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTACG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133168586 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * *
133168628 GGAG-CTCAGACACTATTGGCAACCTAGGGCACTGGTCGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT
133168667 ATCGGCAACC
Statistics
Matches: 998, Mismatches: 101, Indels: 61
0.86 0.09 0.05
Matches are distributed among these distances:
38 10 0.01
39 11 0.01
40 66 0.07
41 213 0.21
42 320 0.32
43 377 0.38
44 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:133167701 original size:84 final size:86
Alignment explanation
Indices: 133167496--133168666 Score: 1409
Period size: 84 Copynumber: 14.0 Consensus size: 86
133167486 TGGATATGCA
* * * *
133167496 GGAG-CTCGGACACCATCGGCAACCTA-GCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133167559 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * *
133167580 GGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTACGGGAGCCTCAGACACCATCGG-A
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133167644 ACCTAGGCCCCAGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* *
133167665 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAACCTCGG--ACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* *
133167727 ACCTAGGACCCTGGTCGCGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * *
133167748 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133167813 ACCTAGGCCCCTAGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * ** *
133167834 GGAGCCTCAGACACCATTGG-AACCTAGGCCCCTGGTCGTGCGGGAG-CTCAAACACCATTGGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133167896 ACATAGGCCCCTGGTCGTGC-
66 ACCTAGGCCCCTGGTCGTGCG
* * *
133167916 GGAACCTCGG-GACCATCGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTC-GAGCACCATCGGC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGA-CACCATCGGC
133167979 AACCTAGG-CCCTGGTCGTGCG
65 AACCTAGGCCCCTGGTCGTGCG
* * *
133168000 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* *
133168064 CCCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * *
133168085 AGAGCCTC-GA-ACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC-TCGGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* ** *
133168145 ACCTTGGTGCTTGGAT-GTGC-
66 ACCTAGGCCCCTGG-TCGTGCG
* *
133168165 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCT-GTCGTGCGGGAGCCTTGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133168229 CCCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * * *
133168250 AGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTTGGA-ACCATCGGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133168313 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * *
133168334 GGAGCCTCGGGCACCATCGGAAACCTAGG-CCTTGGTCGTACGGGAGCCTCAGACACCATCGG-A
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
133168397 ACCTAGG-CCCTGGTCGTGC-
66 ACCTAGGCCCCTGGTCGTGCG
* * * * *
133168416 GGAG-CTC-GACACCATCAGCAACCTAGGCCCTTGGTCGTGGCAGGAACCTCGG-GACCATCGGC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGT-GCGGGAGCCTCGGACACCATCGGC
*
133168478 AACCTAGGACCCTGGTCGTGCG
65 AACCTAGGCCCCTGGTCGTGCG
* * * *
133168500 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133168565 ACCTAGGCCCCTGGTCGTACG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * *
133168586 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGTGGGAG-CTCAGACACTATTGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* *
133168649 ACCTAGGGCACTGGTCGT
66 ACCTAGGCCCCTGGTCGT
133168667 ATCGGCAACC
Statistics
Matches: 941, Mismatches: 113, Indels: 66
0.84 0.10 0.06
Matches are distributed among these distances:
80 24 0.03
81 44 0.05
82 100 0.11
83 168 0.18
84 265 0.28
85 174 0.18
86 166 0.18
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (86 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
ACCTAGGCCCCTGGTCGTGCG
Found at i:133168749 original size:42 final size:43
Alignment explanation
Indices: 133168667--133169164 Score: 474
Period size: 42 Copynumber: 11.9 Consensus size: 43
133168657 CACTGGTCGT
*
133168667 ATCGGCAACCTAGGAACC-TGGTCGTGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
133168710 ATCGGCAACCTAGGCCCCTGGT-GTGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * *
133168752 ATCGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGAACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
133168794 ATCGGC-ACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* ** * *
133168835 ATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGACACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * *
133168877 ATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* ** *
133168920 ATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GACACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
*
133168961 ATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGG-ACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * *
133169003 ATC-GTAACCTA-GCCCTTAGTCCTGCGGGA-CCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * ** * * *
133169043 ATCGGC-ACCTTGGTGCCTCGGAAGTGCGAGAGCCTCGAGCAGC
1 ATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * ** *
133169086 ATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* * * *
133169128 ATAGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
133169165 AGCAGCAAGG
Statistics
Matches: 374, Mismatches: 63, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
39 7 0.02
40 32 0.09
41 66 0.18
42 159 0.43
43 110 0.29
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
Found at i:133168793 original size:109 final size:109
Alignment explanation
Indices: 133168560--133168765 Score: 279
Period size: 109 Copynumber: 1.9 Consensus size: 109
133168550 CGGGCACCAT
**
133168560 CGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGT
1 CGGCAACCTAGGAACCTGGTCGTACGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGT
* * * *
133168625 GTGGGAGCTCAGACACTATTGGCAACCTAGGGCACTGGTCGTAT
66 GCGGGAGCTCAGACACCATCGGCAACCTAGGGCACTGGTCGTAG
* * *
133168669 CGGCAACCTAGGAACCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT-G
1 CGGCAACCTAGGAACCTGGTCGTACGGGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCG
* * *
133168733 TGCGGGAGCCTCGGGCACCATCGGCACCCTAGG
65 TGCGGGAG-CTCAGACACCATCGGCAACCTAGG
133168766 CCCTTGGTCG
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
109 49 0.58
110 35 0.42
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (109 bp):
CGGCAACCTAGGAACCTGGTCGTACGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCGT
GCGGGAGCTCAGACACCATCGGCAACCTAGGGCACTGGTCGTAG
Found at i:133169031 original size:167 final size:167
Alignment explanation
Indices: 133168691--133169141 Score: 558
Period size: 167 Copynumber: 2.7 Consensus size: 167
133168681 AACCTGGTCG
*
133168691 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTGTGCGGGAGCCTCGGGCACCATCG
1 TGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTGTGCGAGAGCCTCGGGCACCATCG
* ** *
133168756 GCACCCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGA-ACCATCGGC-ACCTAGGCCCTTGGTCGT
65 GCA-CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGT
* * ** * *
133168818 GCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATG
128 GCGGAGCCTCGGGCACCATCGGAACCTTAGCCCTTAGATC
* *
133168858 TGCGGGAGCCTAGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGT-GTGCGAGAGCCTCGGGCACCATC
133168923 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTG
64 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
133168987 CCGGAGCCTCGGG-ACCATCGTAACC-TAGCCCTTAG-TCC
129 -CGGAGCCTCGGGCACCATCGGAACCTTAGCCCTTAGAT-C
* * ** * * * *
133169025 TGCGGGA-CCTCGGGCACCATCGGCACCTTGGTGCCTCGGAAGTGCGAGAGCCTCGAGCAGCATT
1 TGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCT-GG-TGTGCGAGAGCCTCGGGCACCATC
*
133169089 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
64 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
133169142 ACGTTGGATG
Statistics
Matches: 249, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
165 9 0.04
166 71 0.29
167 101 0.41
168 56 0.22
169 12 0.05
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (167 bp):
TGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGGTGTGCGAGAGCCTCGGGCACCATCGG
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
GAGCCTCGGGCACCATCGGAACCTTAGCCCTTAGATC
Found at i:133169194 original size:43 final size:42
Alignment explanation
Indices: 133169046--133169200 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 42
133169036 GGGCACCATC
* * * *
133169046 GGCACCTTGGTGCCTCGGAAGTGCGAGAGCCTCGAGCAGCATT
1 GGCACCCTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCA-A
* * *
133169089 GGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCG-GACACCATA
1 GGCACCCTGGTGCCTCGGATGTGCGGGAGCCTCGAG-CAGCA-A
* * * * *
133169131 GGCAACCTAGG-ACGTTGGATGTGCGGGTGCCTCGAGCAGCAA
1 GGCACCCT-GGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCAA
133169173 GGGCACCCTGGTGCCTCGGATGTGCGGG
1 -GGCACCCTGGTGCCTCGGATGTGCGGG
133169201 CTAAAGAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.35
43 57 0.63
44 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.38, T:0.19
Consensus pattern (42 bp):
GGCACCCTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCAA
Found at i:133175316 original size:29 final size:29
Alignment explanation
Indices: 133175283--133175347 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
133175273 GTGACGAGAT
133175283 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133175312 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
133175341 CGGCACT
1 TGGCACT
133175348 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:133183064 original size:29 final size:29
Alignment explanation
Indices: 133182963--133183056 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
133182953 GTGACGAGAT
133182963 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133182992 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133183021 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
133183050 CGGCACT
1 TGGCACT
133183057 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:133183081 original size:58 final size:58
Alignment explanation
Indices: 133182959--133183093 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
133182949 TACGGTGACG
* *
133182959 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
133183016 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
133183074 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
133183094 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:133187040 original size:26 final size:26
Alignment explanation
Indices: 133187009--133187077 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
133186999 CTGAAAAAAG
133187009 TGTCCCTGTTTCAGACATCTGAAACC
1 TGTCCCTGTTTCAGACATCTGAAACC
133187035 TGTCCCTGTTTCAGACATCTGAAACC
1 TGTCCCTGTTTCAGACATCTGAAACC
133187061 TGTCCCTGTTTCAGACA
1 TGTCCCTGTTTCAGACA
133187078 CATGGATGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (26 bp):
TGTCCCTGTTTCAGACATCTGAAACC
Found at i:133187253 original size:24 final size:24
Alignment explanation
Indices: 133187221--133187272 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
133187211 CCGGTTAGGT
* *
133187221 TCCCGGCGATGCTCCGACGATCCA
1 TCCCAGCGATGATCCGACGATCCA
*
133187245 TCCCAGCGATGATCCGGCGATCCA
1 TCCCAGCGATGATCCGACGATCCA
133187269 TCCC
1 TCCC
133187273 GGGATATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.42, G:0.23, T:0.17
Consensus pattern (24 bp):
TCCCAGCGATGATCCGACGATCCA
Found at i:133187400 original size:58 final size:59
Alignment explanation
Indices: 133187309--133187422 Score: 194
Period size: 58 Copynumber: 1.9 Consensus size: 59
133187299 CCCTCCCCAA
* *
133187309 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
*
133187368 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAA
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAA
133187423 TCATCCCTGT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 48 0.92
59 4 0.08
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:133190691 original size:24 final size:24
Alignment explanation
Indices: 133190624--133190691 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
133190614 GGTTAGGTTC
* * **
133190624 CCGGCGGTGCTCCGACGATCCATT
1 CCGGCGGTGCTCCGGCGAGCTTTT
* **
133190648 CCGGCGGTGGTCTTGCGAGCTTTT
1 CCGGCGGTGCTCCGGCGAGCTTTT
*
133190672 CCGGCGGTGCTCCGGTGAGC
1 CCGGCGGTGCTCCGGCGAGC
133190692 CGTCTCGAAA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.07, C:0.32, G:0.37, T:0.24
Consensus pattern (24 bp):
CCGGCGGTGCTCCGGCGAGCTTTT
Found at i:133191008 original size:43 final size:43
Alignment explanation
Indices: 133190975--133191707 Score: 744
Period size: 43 Copynumber: 17.2 Consensus size: 43
133190965 GGATATGCAA
*
133190975 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
133191018 GAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * *
133191061 GACCCTCCGG-CACCATCGGCAACCCAGGCCCCTGGTCGTGCGA
1 GAGCCT-CGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
133191104 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
133191147 GAGCCTCGG-GACCATCGGCAACCCAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * *
133191189 GAGCCTCGGGCACTATCGACAACTTAGGCCCCTGGTCGTG-GG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
133191231 AGAGCCTC-GAGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGA
1 -GAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
133191275 GAGCCTC-GAGCACCATCGGCACCCTAGGCCCTTGGTCGTGCGA
1 GAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
133191318 GAGCCTCGG-GACCATCGGCAA-CTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * **
133191359 GAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
133191401 GAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * ** *
133191444 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGA
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
133191486 AAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCCG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
133191529 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCAG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * *
133191572 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGG
* * * ** *
133191615 GAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCGTGGAT-GTGCGG
1 GAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * * *
133191657 GAGCCTCGGACACCATAGACAACCTAGGACGTTGGAT-GTGCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
*
133191700 GTGCCTCG
1 GAGCCTCG
133191708 AGCAGCAGGG
Statistics
Matches: 591, Mismatches: 79, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
41 29 0.05
42 161 0.27
43 395 0.67
44 6 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (43 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
Found at i:133191198 original size:85 final size:85
Alignment explanation
Indices: 133190975--133191684 Score: 801
Period size: 85 Copynumber: 8.3 Consensus size: 85
133190965 GGATATGCAA
* * *
133190975 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAA
1 GAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
133191040 CCTAGGCCCTTGGTCGTGCGG
65 CCTAGGCCCTTGGTCGTGCGG
* * *
133191061 GACCCTCCGGCACCATCGGCAACCCAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
1 GAGCCT-CGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
*
133191126 CCTAGGCCCCTGGTCGTGCGG
65 CCTAGGCCCTTGGTCGTGCGG
* * * *
133191147 GAGCCTCGGGACCATCGGCAACCCAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACTATCGACAAC
1 GAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
133191212 TTAGGCCCCTGGTCGTG-GG
66 CTAGGCCCTTGGTCGTGCGG
* * *
133191231 AGAGCCTCGAGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGAGCACCATCGGCA
1 -GAGCCTCG-GCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
133191296 CCCTAGGCCCTTGGTCGTGCGA
64 ACCTAGGCCCTTGGTCGTGCGG
* * *
133191318 GAGCCTCGGGACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-AC
1 GAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* **
133191381 CTTGGTGCTTGGAT-GTGCGG
66 CTAGGCCCTTGG-TCGTGCGG
* *
133191401 GAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
1 GAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* ** *
133191465 CCTTGGTGCTTGGAT-GTGCGA
65 CCTAGGCCCTTGG-TCGTGCGG
* * * * *
133191486 AAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
*
133191551 CCTAGGCCCTTGGTCGTGCAG
65 CCTAGGCCCTTGGTCGTGCGG
* ** * * *
133191572 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC
1 GAGCCTC-GGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* ** *
133191635 -ACCTTGGTGCGTGGAT-GTGCGG
63 AACCTAGGCCCTTGG-TCGTGCGG
* *
133191657 GAGCCTCGGACACCATAGACAACCTAGG
1 GAGCCTCGG-CACCATCGGCAACCTAGG
133191685 ACGTTGGATG
Statistics
Matches: 539, Mismatches: 70, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
83 23 0.04
84 51 0.09
85 246 0.46
86 212 0.39
87 7 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (85 bp):
GAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGG
Found at i:133191638 original size:171 final size:170
Alignment explanation
Indices: 133190926--133191707 Score: 893
Period size: 171 Copynumber: 4.6 Consensus size: 170
133190916 GACGTCAGTG
* * *
133190926 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAAGAGCCTCGGACACCAT
1 GTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTGCGAGAGCCTCGGACACCAT
* *
133190991 CGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* *
133191056 TGCGGGACCCTCCGGCACCATCGGCAACCCAGGCCCCTGGTC
130 TGCGGGAGCCTCGGGCACCATCGGC-ACCCAGGCCCCTGGTC
* * ** * * *
133191098 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGG-GACCA
1 GTGCGAGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCA
* * * * * *
133191161 TCGGCAACCCAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACTATCGACAACTTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
133191226 GTG-GGAGAGCCTCGAGCACCATCGGCACCCTAGGCCCCTGGTC
129 GTGCGG-GAGCCTCGGGCACCATCGGCACCC-AGGCCCCTGGTC
* ** *
133191269 GTGCGAGAGCCTCGAGCACCATCGGCACCCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-GACCA
1 GTGCGAGAGCCTCGAGCACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCA
* * **
133191332 TCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT
64 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
* *
133191395 -GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTC
128 CGTGCGGGAGCCTCGGG-CACCATCGG-CACCCAGGCCCCTGGTC
* * *
133191438 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGAAAGCCTCGGACACCATC
1 GTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC
* * *
133191503 GGTAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGT
66 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
* ** **
133191568 GCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-
131 GCGGGAGCCTCGGGCACCATCGGCACCCAGGCCCCT-GG-TC
* * * * * *
133191609 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCGTGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC
* * * *
133191674 GACAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
66 GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
133191708 AGCAGCAGGG
Statistics
Matches: 525, Mismatches: 67, Indels: 37
0.83 0.11 0.06
Matches are distributed among these distances:
168 26 0.05
169 75 0.14
170 97 0.18
171 276 0.53
172 45 0.09
173 6 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (170 bp):
GTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGGGAGCCTCGGGCACCATCGGCACCCAGGCCCCTGGTC
Found at i:133191660 original size:128 final size:127
Alignment explanation
Indices: 133190926--133191743 Score: 791
Period size: 128 Copynumber: 6.4 Consensus size: 127
133190916 GACGTCAGTG
* * * * * **
133190926 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAAGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG-CACCAT
* *
133190991 CGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
65 CGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** *
133191055 GTGCGGGACCCTCCGGCACCATCGGCAACCCAGGCCCCT-GG-TCGTGCGAGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC-GGCACC
* * *
133191118 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCAACCCAGGCCCCTGGT
63 ATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
133191182 C
127 C
* * * * *
133191183 GTGCGGGAGCCTCGGGCACTATCGACAACTTAG-GCCCCTGG-TCGTG-GGAGAGCCTCGAGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTC-GGAT-GTGCGG-GAGCCTCG-GCAC
* * * *
133191245 CATCGGCACCCTAGGCCCCTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCCTAGGCCCTTGG
62 CATCGGCA-CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
133191310 TC
126 TC
* * * * *
133191312 GTGCGAGAGCCTCGGG-ACCATCGGCAACTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC-GGCACCA
* * ** * *
133191374 TCGACACCTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGT
64 TCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGT
133191437 C
127 C
* **
133191438 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGAAAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGG-CACCAT
* * *
133191502 CGGTAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
65 CGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
133191566 GTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCG-GCACCAT
* * ** * * * * * *
133191631 TGGCACCTTGGTGCGTGGAT-GTGCGGGAGCCTCGGACACCATAGACAACCTAGGACGTTGGAT-
65 CGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * ** *
133191694 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGCGGG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGG
133191744 CTAAAGGAAA
Statistics
Matches: 577, Mismatches: 88, Indels: 49
0.81 0.12 0.07
Matches are distributed among these distances:
125 2 0.00
126 63 0.11
127 71 0.12
128 288 0.50
129 142 0.25
130 11 0.02
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (127 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGCACCATC
GGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:133191714 original size:85 final size:85
Alignment explanation
Indices: 133190926--133191743 Score: 755
Period size: 85 Copynumber: 9.6 Consensus size: 85
133190916 GACGTCAGTG
* * * * **
133190926 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAAGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGACACCAT
133190991 CGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * ** *
133191012 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGACCCTCCGG-CACC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCT-CGGACACC
* *
133191075 ATCGGCAACCCAGGCCCCTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
* * ** * *
133191098 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGG-GACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* *
133191161 TCGGCAACCCAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * ** *
133191183 GTGCGGGAGCCTCGGGCACTATCGACAACTTAGGCCCCTGG-TCGTG-GGAGAGCCTC-GAGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTT-GGTGCTTGGAT-GTGCGG-GAGCCTCGGA-CAC
* *
133191245 CATCGGCACCCTAGGCCCCTGGTC
62 CATCGGCAACCTAGGCCCTTGGTC
* * * ** * *
133191269 GTGCGAGAGCCTCGAGCACCATCGGCACCCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-GACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
133191332 TCGGCAA-CTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* *
133191353 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCTGGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* *
133191418 GGTAACCTAGGCCCCTGGTC
66 GGCAACCTAGGCCCTTGGTC
**
133191438 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGAAAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
*
133191503 GGTAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * ** * *
133191523 GTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCAGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * *
133191587 TCGGC-ACCTTGGTGCCTCGGAT-
64 TCGGCAACCTAGG-CCCTTGG-TC
* * * * *
133191609 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCGTGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* * *
133191674 GACAACCTAGGACGTTGGAT-
66 GGCAACCTAGGCCCTTGG-TC
* * * ** * *
133191694 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGCGGG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGG
133191744 CTAAAGGAAA
Statistics
Matches: 621, Mismatches: 91, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
83 23 0.04
84 54 0.09
85 277 0.45
86 253 0.41
87 14 0.02
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:133191737 original size:43 final size:43
Alignment explanation
Indices: 133191566--133191743 Score: 164
Period size: 43 Copynumber: 4.2 Consensus size: 43
133191556 GCCCTTGGTC
* * * * *
133191566 GTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * *
133191609 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCGT-GGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * * *
133191651 GTGCGGGAGCCTCG-GACACCATAGACAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGAT
* **
133191694 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
133191737 GTGCGGG
1 GTGCGGG
133191744 CTAAAGGAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.30
43 75 0.68
44 1 0.01
ACGTcount: A:0.16, C:0.28, G:0.39, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
Found at i:133192910 original size:35 final size:35
Alignment explanation
Indices: 133192871--133192942 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
133192861 GTCTAAGATC
133192871 GCATATCTTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCTTTGAAGAT-TACCTTCCATATTTGCCAA
*
133192906 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
133192941 GC
1 GC
133192943 TCCGGAGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
Found at i:133198136 original size:35 final size:35
Alignment explanation
Indices: 133198097--133198168 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
133198087 GTCTAAGATC
*
133198097 GCATATCTTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCTTTGAAGAT-TACCTTCCACATTTGCCAA
*
133198132 GCATATCTTTGAAGATTACTTTCCACATTTGCCAA
1 GCATATCTTTGAAGATTACCTTCCACATTTGCCAA
133198167 GC
1 GC
133198169 TCCGGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (35 bp):
GCATATCTTTGAAGATTACCTTCCACATTTGCCAA
Found at i:133204281 original size:23 final size:24
Alignment explanation
Indices: 133204251--133204301 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
133204241 CCGGTTAGGT
*
133204251 TCCCAGCG-TGCTCCGACGATCCA
1 TCCCAGCGATGATCCGACGATCCA
*
133204274 TCCCAGCGATGATCCGGCGATCCA
1 TCCCAGCGATGATCCGACGATCCA
133204298 TCCC
1 TCCC
133204302 GGGATATACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.18, C:0.43, G:0.22, T:0.18
Consensus pattern (24 bp):
TCCCAGCGATGATCCGACGATCCA
Found at i:133204438 original size:58 final size:58
Alignment explanation
Indices: 133204343--133204457 Score: 185
Period size: 58 Copynumber: 2.0 Consensus size: 58
133204333 CCCAATCCCA
* *
133204343 AAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATACTGAATGAACCGTCCG
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACACTGAATGAACCGTCCG
* * *
133204401 AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAGTGAATGAATCGTCC
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACACTGAATGAACCGTCC
133204458 CTGTCCCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (58 bp):
AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACACTGAATGAACCGTCCG
Found at i:133205456 original size:167 final size:170
Alignment explanation
Indices: 133205211--133205954 Score: 957
Period size: 167 Copynumber: 4.4 Consensus size: 170
133205201 TGGATATGCA
* *
133205211 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
*
133205276 ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CCCTGGTCGTGCGA
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
133205339 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
130 GAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCG
* * *
133205381 GGAGCCT-AGACACCATCGGAACCTAGGCCCCTGGTCGTGTGGGAG-CTCGGACACCATCGGCAA
1 GGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
133205444 CCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
133205507 AGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCG
131 AGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCG
* * * *
133205547 GGAGCCTCGGGCACCATCGGTACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGC-
1 GGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* ** *
133205610 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGC-
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
*
133205672 -GAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
129 GGAGCCTCGGG-CACCATCGG-CACCTAGGCCCCTGGTCGTGCG
* * * **
133205714 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GACACCATCGGCA
1 GGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
* * * *
133205777 ACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAGCCTAGGCCCTTGGTCGTGCGG
65 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* **
133205842 GAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-GTGCG
130 GAGCCTCGGGCACCATCGGCACCTAGGCCCCT-GG-TCGTGCG
* * * * ** *
133205884 GGAGCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 GGAGCCTCGGA-CACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC
133205947 AACCTAGG
64 AACCTAGG
133205955 ACGTTGGATG
Statistics
Matches: 514, Mismatches: 39, Indels: 41
0.87 0.07 0.07
Matches are distributed among these distances:
165 4 0.01
166 91 0.18
167 202 0.39
168 84 0.16
169 36 0.07
170 74 0.14
171 23 0.04
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (170 bp):
GGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
AGCCTCGGGCACCATCGGCACCTAGGCCCCTGGTCGTGCG
Found at i:133205975 original size:42 final size:43
Alignment explanation
Indices: 133205211--133205954 Score: 911
Period size: 42 Copynumber: 17.7 Consensus size: 43
133205201 TGGATATGCA
*
133205211 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
133205254 GGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
133205297 GGAGCCTCGG-CACCATCGGCAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133205338 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133205381 GGAGCCT-AGACACCATCGG-AACCTAGGCCCCTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
133205422 GGAG-CTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
133205464 GGAGCCTCGG--ACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
133205505 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133205547 GGAGCCTCGGGCACCATCGGTACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
133205590 AGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
133205631 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
133205672 -GAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
133205714 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
133205756 GGAGCCTC-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133205798 GGAGCCTCGGGCACCATCGGTAGCCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
133205841 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * **
133205884 GGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
133205926 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
133205955 ACGTTGGATG
Statistics
Matches: 618, Mismatches: 60, Indels: 46
0.85 0.08 0.06
Matches are distributed among these distances:
40 20 0.03
41 150 0.24
42 228 0.37
43 219 0.35
44 1 0.00
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:133206006 original size:42 final size:43
Alignment explanation
Indices: 133205709--133206012 Score: 187
Period size: 43 Copynumber: 7.2 Consensus size: 43
133205699 GCCCCTGGTC
* * * * *
133205709 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * *
133205751 GTGCGGGAGCCTCGA-CACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCT-GGTGCCTCGGAT
* * * * * * * *
133205792 CGTGCCGGAGCCTCGGGCACCATCGGTAGCCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCAGCATAGGCACCCT-GGTGCCTCGGAT
* * * *
133205835 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
1 -GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * *
133205879 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * *
133205921 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGAT
* **
133205964 GTG-GGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
133206006 GTGCGGG
1 GTGCGGG
133206013 CTAAAGGAAA
Statistics
Matches: 218, Mismatches: 32, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
41 17 0.08
42 96 0.44
43 104 0.48
44 1 0.00
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
Found at i:133209203 original size:13 final size:13
Alignment explanation
Indices: 133209185--133209214 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
133209175 CGTGCTCCGA
133209185 CGATCCATCCCAG
1 CGATCCATCCCAG
133209198 CGATCCATCCCAG
1 CGATCCATCCCAG
133209211 CGAT
1 CGAT
133209215 GATCCGGCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.43, G:0.17, T:0.17
Consensus pattern (13 bp):
CGATCCATCCCAG
Found at i:133209360 original size:58 final size:59
Alignment explanation
Indices: 133209269--133209389 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
133209259 CCCTCCCCAA
* *
133209269 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* * *
133209328 TCCC-AAAGCTAGAATTCAGATACTGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
133209386 TCCC
1 TCCC
133209390 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:133210770 original size:24 final size:25
Alignment explanation
Indices: 133210716--133210786 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 25
133210706 GCCGGTTAGG
* * *
133210716 TTCCCGGCGGTGCTCTGACGATCTA
1 TTCCCGGCGGTGCTCCGGCGAGCTA
*
133210741 TT-CCGGCGGTGGTCCGGCGAGCT-
1 TTCCCGGCGGTGCTCCGGCGAGCTA
* *
133210764 TTCCCGGCTGTGCTCCGGTGAGC
1 TTCCCGGCGGTGCTCCGGCGAGC
133210787 CATCCCAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 2 0.05
24 34 0.89
25 2 0.05
ACGTcount: A:0.07, C:0.32, G:0.35, T:0.25
Consensus pattern (25 bp):
TTCCCGGCGGTGCTCCGGCGAGCTA
Found at i:133211102 original size:43 final size:43
Alignment explanation
Indices: 133211068--133211946 Score: 977
Period size: 43 Copynumber: 20.7 Consensus size: 43
133211058 TGGATATGCA
* * * * *
133211068 GGAGCCTCGGACACCATTGGAAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
133211111 GGAGCCTCGGCCACCATCGACAACCTAGGACCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133211154 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133211197 AGAGCCTCGGGCACCACCGGCAACCTAGGCCCCTGGTCGTACG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133211240 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
133211282 AGAG-CTCGGACACCATCAGCAACCTAGGCCCCTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133211324 GGAGCCTCGGG-ACCATCGGCAACCTTGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133211366 GGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133211409 GGAGCCTCGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
133211451 AGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
133211494 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTTG-G
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCG-TGCG
* * *
133211537 GGAGCCTCGGGCACCATCGGCACCCTAGGTCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
133211580 AGAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* ** *
133211621 GGAGCCTCGGGCACCATCGG--ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
* *
133211662 GGAGCCT-GGGACACCATCAGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133211705 GGAGCCTCGGGTACCATCGGC-ACCTTAGTG--CTTGGAT-GTGTG
1 GGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCCTGG-TCGTGCG
* * * **
133211747 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGAT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
133211790 GGTGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* **
133211833 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCG
* * * * ** *
133211876 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
* ** *
133211918 GAAGCCTCGAACACCATAGGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG
133211947 ATGTTGGATG
Statistics
Matches: 725, Mismatches: 88, Indels: 46
0.84 0.10 0.05
Matches are distributed among these distances:
40 3 0.00
41 73 0.10
42 212 0.29
43 430 0.59
44 7 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:133211404 original size:85 final size:85
Alignment explanation
Indices: 133211068--133211884 Score: 917
Period size: 85 Copynumber: 9.6 Consensus size: 85
133211058 TGGATATGCA
* * * * * *
133211068 GGAGCCTCGGACACCATTGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGACA
1 GGAGCCTCGG-GACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACA
*
133211133 ACCTAGGACCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * *
133211154 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCACCGGCA
1 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACA
* *
133211219 ACCTAGGCCCCTGGTCGTACG
65 ACCTAGGCCCTTGGTCGTGCG
** * *
133211240 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCGTGCGAGAG-CTCGGACACCATC-AGC
1 GGAGCCTC-GGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGA-C
* *
133211302 AACCTAGGCCCCTGGTCGTGCA
64 AACCTAGGCCCTTGGTCGTGCG
*
133211324 GGAGCCTCGGGACCATCGGCAACCTTGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
1 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
*
133211389 CCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* *
133211409 GGAGCCTCGGGACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAA
1 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
*
133211474 CCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* *
133211494 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTTG-GGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCG-TGCGGGAGCCTCGGGCACCATCGAC
* *
133211558 ACCCTAGGTCCTTGGTCGTGCG
64 AACCTAGGCCCTTGGTCGTGCG
* * * * *
133211580 AGAGCCTCGAGACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG--GA
1 GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
* **
133211642 CCTTGGTGCTTGGAT-GTGCG
66 CCTAGGCCCTTGG-TCGTGCG
* * * *
133211662 GGAGCCT-GGGACACCATCAGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGC
1 GGAGCCTCGGG--ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGAC
*
133211726 -ACCTTAGTG--CTTGGAT-GTGTG
64 AACC-TAG-GCCCTTGG-TCGTGCG
* * * ** * **
133211747 GGAGCCTCGGACACCATCAGCAACCTAGGCCCTTGGTCGTGATGGTGCCTCGGGCACCATCGGTA
1 GGAGCCTCGG-GACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACA
133211812 ACCTAGGCCCTTGGTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* **
133211833 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCG
1 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCG
133211885 AGCAGCATTG
Statistics
Matches: 634, Mismatches: 71, Indels: 52
0.84 0.09 0.07
Matches are distributed among these distances:
81 2 0.00
82 22 0.03
83 18 0.03
84 138 0.22
85 239 0.38
86 210 0.33
87 5 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (85 bp):
GGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAA
CCTAGGCCCTTGGTCGTGCG
Found at i:133211910 original size:128 final size:128
Alignment explanation
Indices: 133211069--133211946 Score: 980
Period size: 128 Copynumber: 6.9 Consensus size: 128
133211059 GGATATGCAG
* * * * * * *
133211069 GAGCCTCGGACACCATTGGAAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-A
*
133211134 CCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* * * * *
133211198 GAGCCTCGGGCACCACCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCAGACACCATCGGAAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* * * * *
133211263 CTAGGCCCCTGGTCGTGCGAGAG-CTCGGACACCATCAGCAACCTAGGCCCCTGGTCGTGC-A
66 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* *
133211324 GGAGCCTCGGG-ACCATCGGCAACCTTGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACA
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
*
133211388 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
*
133211452 GAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-
* * * * *
133211517 CCTAGGCCCCTGGTCGTTG-GGGAGCCTCGGGCACCATCGGCACCCTAGGTCCTTGGTCGTGCGA
65 CCTAGGCCCTTGGTCG-TGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* * *
133211581 GAGCCTCGAG-ACCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* ** * *
133211643 CTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCAGTAACCTAGGCCCCTGGTCGTGCGG
66 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* * * * *
133211706 GAGCCTCGGGTACCATCGGC-ACCTTAGTG--CTTGGAT-GTGTGGGAGCCTCGGACACCATCAG
1 GAGCCTCGGGCACCATCGGCAACC-TAG-GCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
** * *
133211767 CAACCTAGGCCCTTGGTCGTGATGGTGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC
63 C-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGC
*
133211832 GG
127 GA
* ** * * *
133211834 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* ** * ** * *
133211897 ACCTTGGTGCTTGGAT-GTGCGGAAGCCTCGAACACCATAGGCAACCTAGG
64 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
133211947 ATGTTGGATG
Statistics
Matches: 646, Mismatches: 80, Indels: 47
0.84 0.10 0.06
Matches are distributed among these distances:
124 5 0.01
125 54 0.08
126 87 0.13
127 154 0.24
128 227 0.35
129 119 0.18
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (128 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
Found at i:133217128 original size:43 final size:43
Alignment explanation
Indices: 133217070--133217696 Score: 740
Period size: 43 Copynumber: 15.0 Consensus size: 43
133217060 CGGATATGCA
* *
133217070 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133217113 GGAGCCTCGGCCACCATCGACAACCTAGGCCCTTGGTCGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
133217156 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
133217199 GGAGCCTCAGACACCATCGG-AACCCAGGGCCC-TGGTCATGCG
1 GGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTCGTGCG
* * *
133217241 GGAG-CTCGGACACCATCGGTAACCTA--------GTCGTGCT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
133217275 GGAG-CTCGGG-ACCATCGGCAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
133217315 GGAGCCTCGGGCACGATCGGCAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
133217357 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133217400 GGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTAGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
133217443 AGAGCCTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
133217484 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
133217526 GGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTACG
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
133217569 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
133217611 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
133217654 AGAGCCTCGGGTACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
133217697 CTCATAGCCA
Statistics
Matches: 505, Mismatches: 58, Indels: 42
0.83 0.10 0.07
Matches are distributed among these distances:
33 14 0.03
34 15 0.03
40 11 0.02
41 50 0.10
42 167 0.33
43 245 0.49
44 3 0.01
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:133217285 original size:84 final size:86
Alignment explanation
Indices: 133217065--133217696 Score: 422
Period size: 85 Copynumber: 7.6 Consensus size: 86
133217055 TGCCTCGGAT
* * * * * * *
133217065 ATGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
*
133217130 CGACAACCTAGGCCCTTGGTC
66 CGACAACCCAGGCCCTTGGTC
* * * *
133217151 GTGTGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
*
133217216 CG-GAACCCAGGGCCC-TGGTC
66 CGACAACCCA-GGCCCTTGGTC
* **
133217236 ATGCGGGAG-CTCGGACACCATCGGTAACCTA-G----T---CGTGCTGGAG-CTC-GGGACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
* *
133217290 CGGCAACCTAGGCCC-TGGTC
66 CGACAACCCAGGCCCTTGGTC
* * * * * * *
133217310 GTGCGGGAGCCTCGGGCACGATCGGCAACCTAGG-CCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
* *
133217374 CGGC-ACCCTAGGCCCCTGGTC
66 CGACAACCC-AGGCCCTTGGTC
* * * * * ** * * **
133217395 GTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCTTGGTAGTGTGAGAGCCTC-GGGACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
* * *
133217459 CGGC-ACCTAGGCCTTTGGTC
66 CGACAACCCAGGCCCTTGGTC
* * * * ** * ** **
133217479 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGATGTGCGGGAGCCTGGGACACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
** * *
133217543 CGGTAACCTAGGCCCCTGGTC
66 CGACAACCCAGGCCCTTGGTC
* * * * * ** * ** *
133217564 GTACGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAT
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
* *
133217628 CGGCAACCTAGGCCCTTGGTC
66 CGACAACCCAGGCCCTTGGTC
* ** ** * *
133217649 GTGCTAGAGCCTCGGGTACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCG
133217697 CTCATAGCCA
Statistics
Matches: 463, Mismatches: 65, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
74 26 0.06
75 27 0.06
76 10 0.02
79 2 0.00
82 9 0.02
83 27 0.06
84 82 0.18
85 184 0.40
86 96 0.21
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (86 bp):
ATGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGGCGTGCGGGAGCCTCAGACACCAT
CGACAACCCAGGCCCTTGGTC
Found at i:133217407 original size:85 final size:85
Alignment explanation
Indices: 133217267--133217696 Score: 520
Period size: 85 Copynumber: 5.1 Consensus size: 85
133217257 CGGTAACCTA
*
133217267 GTCGTGCTGGAG-CTCGGG-ACCATCGGCAACCTAGG-CCCTGGTCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
*
133217329 GATCGGCAACCTAGGCCCTG
66 CATCGGCAACCTAGGCCCTG
*
133217349 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
*
133217414 CATCGGCACCCTAGGCCCTTG
66 CATCGGCAACCTAGGCCC-TG
* * * **
133217435 GTAGTGTGAGAGCCTCGGG-ACCATCGGC-ACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
* * *
133217498 CATCGGC-ACCTTGGTGCTTG
66 CATCGGCAACCTAGG-CCCTG
* *
133217518 GAT-GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGGC
1 G-TCGTGCGGGAGCCTCGGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
* * *
133217581 ACCATCGGC-ACCTTGGTGCTTG
64 ACCATCGGCAACCTAGG-CCCTG
* * ** *
133217603 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCTAGAGCCTCGGGTA
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
*
133217667 CCATCGGTAACCTAGGCCCTTG
65 CCATCGGCAACCTAGGCCC-TG
133217689 GTCGTGCG
1 GTCGTGCG
133217697 CTCATAGCCA
Statistics
Matches: 304, Mismatches: 31, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
82 14 0.05
83 24 0.08
84 65 0.21
85 167 0.55
86 34 0.11
ACGTcount: A:0.14, C:0.32, G:0.35, T:0.18
Consensus pattern (85 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCAACCTAGGCCCTG
Found at i:133224437 original size:26 final size:27
Alignment explanation
Indices: 133224374--133224441 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
133224364 AAAATTGTAC
133224374 AGCACTAAGTGTGCGAGTTTGATCATT
1 AGCACTAAGTGTGCGAGTTTGATCATT
*
133224401 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCAT-T
133224428 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
133224442 GACTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 15 0.38
27 24 0.62
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTGATCATT
Found at i:133232308 original size:27 final size:28
Alignment explanation
Indices: 133232252--133232320 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
133232242 AAACTTGTAC
133232252 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
133232280 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
133232307 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
133232321 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 8 0.20
27 15 0.38
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:133232331 original size:26 final size:27
Alignment explanation
Indices: 133232252--133232332 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
133232242 AAACTTGTAC
* *
133232252 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
133232280 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
133232307 AGCACT-AGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
133232333 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 14 0.29
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:133236249 original size:30 final size:30
Alignment explanation
Indices: 133236194--133236324 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
133236184 ATAGTGAATC
*
133236194 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
133236223 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
133236253 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
133236281 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
133236311 CGCACACTTAGTGC
1 CGCACACTTAGTGC
133236325 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:133236304 original size:58 final size:58
Alignment explanation
Indices: 133236193--133236324 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
133236183 TATAGTGAAT
* * * * *
133236193 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
133236252 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
133236310 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
133236325 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:133244207 original size:30 final size:30
Alignment explanation
Indices: 133244152--133244282 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
133244142 ATAGTGAATC
*
133244152 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
133244181 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
133244211 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
133244239 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
133244269 CGCACACTTAGTGC
1 CGCACACTTAGTGC
133244283 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:133244262 original size:58 final size:58
Alignment explanation
Indices: 133244151--133244282 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
133244141 TATAGTGAAT
* * * * *
133244151 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
133244210 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
133244268 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
133244283 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:133254691 original size:40 final size:40
Alignment explanation
Indices: 133254647--133254787 Score: 230
Period size: 40 Copynumber: 3.5 Consensus size: 40
133254637 TTTGCACAAT
133254647 TGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACGAA
*
133254687 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACGAA
**
133254727 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACGAA
*
133254767 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
133254788 GTATCATTCA
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 94 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACGAA
Found at i:133257345 original size:122 final size:120
Alignment explanation
Indices: 133257189--133257412 Score: 349
Period size: 122 Copynumber: 1.9 Consensus size: 120
133257179 TTTTCATTTT
* * *
133257189 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTTCGTGTTAAATCAAGTTATTAGG
1 TCTATCATTTAATTTGCATTCCTAGGTTAGTTATCATACATTACGTGTTAAATCAAG--ATTAAG
* *
133257254 AACACCTCATACCCATGACATTACTATGCTTATTCTCATGCTATTACCATGCCAATA
64 AAAACCTCATACCCATGACATTACTATGCTCATTCTCATGCTATTACCATGCCAATA
*
133257311 TCTATCATTTAATTTGCATTCCTAGGTTAGTTATCATACATTACGTGTTAAATTAAGATTAAGAA
1 TCTATCATTTAATTTGCATTCCTAGGTTAGTTATCATACATTACGTGTTAAATCAAGATTAAGAA
* * *
133257376 AACCTCATACCCATTACATTTCTATTCTCATTCTCAT
66 AACCTCATACCCATGACATTACTATGCTCATTCTCAT
133257413 TGTTATTGTG
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
120 39 0.42
122 54 0.58
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.40
Consensus pattern (120 bp):
TCTATCATTTAATTTGCATTCCTAGGTTAGTTATCATACATTACGTGTTAAATCAAGATTAAGAA
AACCTCATACCCATGACATTACTATGCTCATTCTCATGCTATTACCATGCCAATA
Found at i:133266424 original size:48 final size:48
Alignment explanation
Indices: 133266339--133266455 Score: 155
Period size: 48 Copynumber: 2.4 Consensus size: 48
133266329 AAGCTGACGT
* * *
133266339 CATGTCCCAGACAGGTCTTACACTAGCTTGTGTATCTCGAGGCCAATG
1 CATGTCCAAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATG
* * *
133266387 CTTGTCTCAAG-CATGTCTTACACTGGCTTGTATATCTCGAGGCCGATG
1 CATGTC-CAAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATG
*
133266435 CATGTCCCAGACATGTCTTAC
1 CATGTCCAAGACATGTCTTAC
133266456 TGTAACACCC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.05
48 53 0.90
49 3 0.05
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.30
Consensus pattern (48 bp):
CATGTCCAAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATG
Found at i:133266733 original size:21 final size:23
Alignment explanation
Indices: 133266690--133266736 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
133266680 ATCAAGGCTC
* *
133266690 CACACGCCCGTGTAGGTATAGAA
1 CACACGCCCGGGTAGCTATAGAA
133266713 CACACGCCCGGGT-GCTA-AGAA
1 CACACGCCCGGGTAGCTATAGAA
133266734 CAC
1 CAC
133266737 GCCCGTGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 3 0.14
23 12 0.55
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.13
Consensus pattern (23 bp):
CACACGCCCGGGTAGCTATAGAA
Found at i:133271890 original size:124 final size:124
Alignment explanation
Indices: 133271668--133271892 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
133271658 GAATTATGTG
* * * ** * * *
133271668 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
133271733 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
133271792 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
133271857 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
133271893 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:133272014 original size:40 final size:40
Alignment explanation
Indices: 133271887--133272016 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
133271877 ATGCTGGAAA
* *
133271887 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
133271927 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
133271967 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
133272007 TTATATCCGG
1 TTATATCCGG
133272017 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:133272015 original size:80 final size:80
Alignment explanation
Indices: 133271849--133272016 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
133271839 CAATTGAATG
* * *
133271849 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
133271914 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
133271929 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
133271993 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
133272009 ATATCCGG
1 ATATCCGG
133272017 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:133280044 original size:40 final size:40
Alignment explanation
Indices: 133279917--133280046 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
133279907 ATGCTGGAAA
* *
133279917 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
133279957 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
133279997 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
133280037 TTATATCCGG
1 TTATATCCGG
133280047 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:133280045 original size:80 final size:79
Alignment explanation
Indices: 133279880--133280046 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
133279870 CAATTGAATG
* *
133279880 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
133279945 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
133279959 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
133280023 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
133280039 ATATCCGG
1 ATATCCGG
133280047 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:133287279 original size:40 final size:40
Alignment explanation
Indices: 133287220--133287388 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
133287210 CGGGACTTTA
* * *
133287220 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
133287260 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
133287300 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
133287340 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
133287380 CCCGGATAT
1 CCCGGATAT
133287389 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:133289770 original size:2 final size:2
Alignment explanation
Indices: 133289760--133289805 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
133289750 TTTTGGTTTG
*
133289760 TA TA T- TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
133289801 TA TA T
1 TA TA T
133289806 CGTCAATGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:133304741 original size:27 final size:26
Alignment explanation
Indices: 133304672--133304786 Score: 113
Period size: 27 Copynumber: 4.3 Consensus size: 26
133304662 ATCATGACTG
* * *
133304672 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCATAGCCA
*
133304698 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCATAGCCA
* *
133304725 CCAGAATAGATATTTGTGGCGTAGCCA
1 CCAGAACAGATA-TTGTGGCATAGCCA
* * *
133304752 TCAAAAACAGATGTTTGTGGCATAGCCA
1 -CCAGAACAGAT-ATTGTGGCATAGCCA
133304780 CCAGAAC
1 CCAGAAC
133304787 GCTTCCTCCA
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 11 0.15
27 40 0.56
28 21 0.29
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCATAGCCA
Found at i:133313163 original size:18 final size:18
Alignment explanation
Indices: 133313140--133313176 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
133313130 ACCTCAACTG
133313140 AGACATTTATCACAATTC
1 AGACATTTATCACAATTC
133313158 AGACATTTATCACAATTC
1 AGACATTTATCACAATTC
133313176 A
1 A
133313177 TACTTAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (18 bp):
AGACATTTATCACAATTC
Found at i:133315911 original size:16 final size:17
Alignment explanation
Indices: 133315879--133315918 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
133315869 TGAATTGAGA
*
133315879 AATTAATTTATTTAAAT
1 AATTAATTGATTTAAAT
133315896 AATTAATTGA-TTAAAT
1 AATTAATTGATTTAAAT
*
133315912 AAATAAT
1 AATTAAT
133315919 ATTTTGGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
AATTAATTGATTTAAAT
Found at i:133317970 original size:20 final size:20
Alignment explanation
Indices: 133317945--133317986 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
133317935 GGAAGGACTT
133317945 GTTTGGTGGTTGATTGGCAG
1 GTTTGGTGGTTGATTGGCAG
133317965 GTTTGGTGGTTGATTGGCAG
1 GTTTGGTGGTTGATTGGCAG
133317985 GT
1 GT
133317987 GCAAAGTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.10, C:0.05, G:0.45, T:0.40
Consensus pattern (20 bp):
GTTTGGTGGTTGATTGGCAG
Found at i:133321697 original size:45 final size:46
Alignment explanation
Indices: 133321599--133321776 Score: 141
Period size: 46 Copynumber: 3.8 Consensus size: 46
133321589 ATCATTTTGT
* * *
133321599 AGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAA
1 AGCCGATGCATGTCCCAGACATGTATTACACTAGCCTACGTCTCAA
* *
133321645 AGTCGATGCATGTCCCAGA-ATGTATTACACTAGCACT-CGTCTCGA
1 AGCCGATGCATGTCCCAGACATGTATTACACTAGC-CTACGTCTCAA
* * * * * * *
133321690 TGCCGATGCCATGTCCTAGACATGGTCTTACTCT-GGCT-CTTAT-AA
1 AGCCGATG-CATGTCCCAGACAT-GTATTACACTAGCCTACGTCTCAA
* *
133321735 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCTAC
1 ---AGCCGATGCATGTCCCAGACATGTATTACACTAGCCTAC
133321777 ACTAACCCAT
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
45 27 0.26
46 43 0.41
47 19 0.18
48 16 0.15
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
AGCCGATGCATGTCCCAGACATGTATTACACTAGCCTACGTCTCAA
Found at i:133321718 original size:93 final size:94
Alignment explanation
Indices: 133321508--133321728 Score: 240
Period size: 93 Copynumber: 2.4 Consensus size: 94
133321498 GTAGGGTGCA
* * * *
133321508 GATGCCATATCCCAGAAATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACA
* * *
133321573 TGGTCTTACACTGACTATCATTTTGTAGCC
66 TGGTATTACACTGAC-ATCATCTCGTAGCC
* *
133321603 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAAGTCGATG-CATGTCCCAGA-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AAGTCGATGCCATGTCCCAGAC
*
133321664 AT-GTATTACACT-AGCACTCGTCTCG-ATGCC
65 ATGGTATTACACTGA-CA-TCATCTCGTA-GCC
* *
133321694 GATGCCATGTCCTAGACATGGTCTTACTCTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
133321729 TTATAATGTG
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
90 3 0.03
91 22 0.21
92 15 0.14
93 42 0.39
94 21 0.20
95 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACA
TGGTATTACACTGACATCATCTCGTAGCC
Done.