Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 434 of 770
Found at i:133968273 original size:40 final size:40
Alignment explanation
Indices: 133968213--133968376 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
133968203 CGGGATTTAA
* ** *
133968213 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
133968253 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
133968293 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
133968333 CCGGACATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
133968373 CCGG
1 CCGG
133968377 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:133968360 original size:80 final size:80
Alignment explanation
Indices: 133968199--133968376 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 80
133968189 GAGTCACGTA
* * * ** **
133968199 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
* *
133968263 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
133968278 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGACATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGACATA
* *
133968342 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
133968358 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
133968377 GTATCATTCA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 11 0.14
80 68 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGACATAA
TAACTAGCACAAATG
Found at i:133976663 original size:173 final size:173
Alignment explanation
Indices: 133976374--133976719 Score: 692
Period size: 173 Copynumber: 2.0 Consensus size: 173
133976364 TCAAGTTACG
133976374 AGCTCGGGGATCGTCAGCTAAGCCTATCACACTATCGACTGTTTTCGGTACCTTTATAAGCGAAC
1 AGCTCGGGGATCGTCAGCTAAGCCTATCACACTATCGACTGTTTTCGGTACCTTTATAAGCGAAC
133976439 TATCAAATCTATGGCATGCATAGGCTATCTTTGGAGTTGGTTTATTTTGAAAAGTGTATGTATAA
66 TATCAAATCTATGGCATGCATAGGCTATCTTTGGAGTTGGTTTATTTTGAAAAGTGTATGTATAA
133976504 AAGCTGTAATAACTCGTTTTTGGGTTAGATCAGAATAGCGGTT
131 AAGCTGTAATAACTCGTTTTTGGGTTAGATCAGAATAGCGGTT
133976547 AGCTCGGGGATCGTCAGCTAAGCCTATCACACTATCGACTGTTTTCGGTACCTTTATAAGCGAAC
1 AGCTCGGGGATCGTCAGCTAAGCCTATCACACTATCGACTGTTTTCGGTACCTTTATAAGCGAAC
133976612 TATCAAATCTATGGCATGCATAGGCTATCTTTGGAGTTGGTTTATTTTGAAAAGTGTATGTATAA
66 TATCAAATCTATGGCATGCATAGGCTATCTTTGGAGTTGGTTTATTTTGAAAAGTGTATGTATAA
133976677 AAGCTGTAATAACTCGTTTTTGGGTTAGATCAGAATAGCGGTT
131 AAGCTGTAATAACTCGTTTTTGGGTTAGATCAGAATAGCGGTT
133976720 TTGGAACCAC
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 173 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (173 bp):
AGCTCGGGGATCGTCAGCTAAGCCTATCACACTATCGACTGTTTTCGGTACCTTTATAAGCGAAC
TATCAAATCTATGGCATGCATAGGCTATCTTTGGAGTTGGTTTATTTTGAAAAGTGTATGTATAA
AAGCTGTAATAACTCGTTTTTGGGTTAGATCAGAATAGCGGTT
Found at i:133977947 original size:28 final size:28
Alignment explanation
Indices: 133977916--133977983 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
133977906 ATGTATATGA
133977916 CACTTAGTGTGCAAAATATTAAGAATGG
1 CACTTAGTGTGCAAAATATTAAGAATGG
* * * *
133977944 CACTTTGTGTGCAAGATATTGAGTATGG
1 CACTTAGTGTGCAAAATATTAAGAATGG
*
133977972 AACTTAGTGTGC
1 CACTTAGTGTGC
133977984 GAAACATCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTTAGTGTGCAAAATATTAAGAATGG
Found at i:133982987 original size:29 final size:29
Alignment explanation
Indices: 133982954--133983036 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
133982944 GTGACGAGAT
133982954 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133982983 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
133983012 TGGCACTAAGTGTGCATGTTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
133983037 AAATTACGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:133983077 original size:60 final size:58
Alignment explanation
Indices: 133982950--133983086 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 58
133982940 TACGGTGACG
* * *
133982950 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* * **
133983007 ATATATGGCACTAAGTGTGCATGTTGGAAAAAATTACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAA-TACGGCACTAAGTGTGC-ATGCTCGAA
* * *
133983067 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
133983087 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
57 3 0.05
58 21 0.32
59 4 0.06
60 36 0.55
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:133991009 original size:31 final size:29
Alignment explanation
Indices: 133990906--133990993 Score: 167
Period size: 29 Copynumber: 3.0 Consensus size: 29
133990896 GTGACGAGAT
133990906 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133990935 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
133990964 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
133990993 T
1 T
133990994 ACGGCACTGG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:133991026 original size:60 final size:58
Alignment explanation
Indices: 133990902--133991038 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 58
133990892 TACGGTGACG
* *
133990902 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
133990959 ATATATGGCACTAAGTGTGCATGCTGGAAAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
133991019 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
133991039 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 3 0.04
58 22 0.33
60 41 0.61
61 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:134001088 original size:66 final size:68
Alignment explanation
Indices: 134001012--134001198 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
134001002 TAGTACCACT
*
134001012 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
134001074 CACG
65 CACG
134001078 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
134001143 ATCACG
63 ATCACG
134001149 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
134001199 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:134001123 original size:71 final size:71
Alignment explanation
Indices: 134001035--134001198 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
134001025 CGATTTGTCT
134001035 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
134001100 CTTTCA
66 CTTTCA
134001106 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
134001171 CTTTCA
66 CTTTCA
134001177 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
134001199 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:134001236 original size:71 final size:70
Alignment explanation
Indices: 134001035--134001232 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
134001025 CGATTTGTCT
* * *
134001035 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
134001100 CTTTCA
65 CTTTCA
* * *
134001106 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
134001171 CTTTCA
65 CTTTCA
* *
134001177 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
134001233 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:134008654 original size:66 final size:68
Alignment explanation
Indices: 134008578--134008764 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
134008568 TAGTACCACT
*
134008578 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
134008640 CACG
65 CACG
134008644 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
134008709 ATCACG
63 ATCACG
134008715 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
134008765 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:134008689 original size:71 final size:71
Alignment explanation
Indices: 134008601--134008764 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
134008591 CGATTTGTCT
134008601 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
134008666 CTTTCA
66 CTTTCA
134008672 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
134008737 CTTTCA
66 CTTTCA
134008743 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
134008765 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:134008802 original size:71 final size:70
Alignment explanation
Indices: 134008601--134008798 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
134008591 CGATTTGTCT
* * *
134008601 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
134008666 CTTTCA
65 CTTTCA
* * *
134008672 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
134008737 CTTTCA
65 CTTTCA
* *
134008743 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
134008799 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:134019008 original size:17 final size:17
Alignment explanation
Indices: 134018986--134019019 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
134018976 GATATGATAC
134018986 TAAAAT-TATGAAAAAAT
1 TAAAATATAT-AAAAAAT
134019003 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
134019020 CTGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:134019306 original size:23 final size:22
Alignment explanation
Indices: 134019276--134019320 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
134019266 AGGTATCTAC
134019276 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
134019299 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
134019321 AATATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:134019314 original size:17 final size:19
Alignment explanation
Indices: 134019299--134019370 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
134019289 AATCATATCT
134019299 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
134019318 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
134019336 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
134019353 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
134019371 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 17 0.35
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:134019355 original size:35 final size:37
Alignment explanation
Indices: 134019292--134019370 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
134019282 ATTACAAAAT
*
134019292 CATATC-T-TCTAAGATTGCATATCATATCTAATATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
134019328 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
134019363 CATATCAT
1 CATATCAT
134019371 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:134019368 original size:14 final size:15
Alignment explanation
Indices: 134019331--134019368 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
134019321 AATATTGCAA
134019331 TCATATCTAAGATTG
1 TCATATCTAAGATTG
134019346 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
134019363 -CATATC
1 TCATATC
134019369 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:134025706 original size:24 final size:23
Alignment explanation
Indices: 134025674--134025723 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
134025664 GAGCAATAAT
* *
134025674 TGGTGGCTTTGTCCACAACCTACA
1 TGGTGGC-TTATCCAAAACCTACA
*
134025698 TGGTTGCTTATCCAAAACCTACA
1 TGGTGGCTTATCCAAAACCTACA
134025721 TGG
1 TGG
134025724 AAGATTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (23 bp):
TGGTGGCTTATCCAAAACCTACA
Found at i:134025731 original size:23 final size:23
Alignment explanation
Indices: 134025685--134025732 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
134025675 GGTGGCTTTG
* ** *
134025685 TCCACAACCTACATGGTTGCTTA
1 TCCAAAACCTACATGGAAGATTA
134025708 TCCAAAACCTACATGGAAGATTA
1 TCCAAAACCTACATGGAAGATTA
134025731 TC
1 TC
134025733 TGCGAATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (23 bp):
TCCAAAACCTACATGGAAGATTA
Found at i:134031368 original size:58 final size:57
Alignment explanation
Indices: 134031241--134031404 Score: 170
Period size: 58 Copynumber: 2.8 Consensus size: 57
134031231 CCGATAACTA
* * * * *
134031241 AAACTATCCCTTTTCATAATTTTGATGGTCGTCACCATACCTTTTCATATTCAATTGTCG
1 AAACTATCCCTTTTCAT-A--TTGATGGTCATCACCATCCCTTTTCATAATCAATAGTCC
* **
134031301 AAACCATCCCTTTTCATAGTTGATGGTTC-TCACCATCCCTTTTCATAATCGGTAG-CC
1 AAACTATCCCTTTTCATA-TTGATGG-TCATCACCATCCCTTTTCATAATCAATAGTCC
*
134031358 AAAGCTATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCAT
1 AAA-CTATCCCTTTTCATATT-GATGGTCATCACCATCCCTTTTCAT
134031405 TGTTCGATAG
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
57 8 0.09
58 63 0.70
59 3 0.03
60 16 0.18
ACGTcount: A:0.24, C:0.27, G:0.10, T:0.39
Consensus pattern (57 bp):
AAACTATCCCTTTTCATATTGATGGTCATCACCATCCCTTTTCATAATCAATAGTCC
Found at i:134031394 original size:29 final size:29
Alignment explanation
Indices: 134031246--134031404 Score: 119
Period size: 29 Copynumber: 5.4 Consensus size: 29
134031236 AACTAAAACT
* *
134031246 ATCCCTTTTCATAATTTTGATGGTCGTCACC
1 ATCCCTTTTCAT-A-TTCGATGGTCATCACC
* * * *
134031277 ATACCTTTTCATATTCAATTGTCGA-AACC
1 ATCCCTTTTCATATTCGATGGTC-ATCACC
134031306 ATCCCTTTTCATAGTT-GATGGTTC-TCACC
1 ATCCCTTTTCATA-TTCGATGG-TCATCACC
* * * * * *
134031335 ATCCCTTTTCATAATCGGTAGCCA-AAGCT
1 ATCCCTTTTCATATTCGATGGTCATCA-CC
*
134031364 ATCCCTTTTCATATTCGATGGTCATCACT
1 ATCCCTTTTCATATTCGATGGTCATCACC
134031393 ATCCCTTTTCAT
1 ATCCCTTTTCAT
134031405 TGTTCGATAG
Statistics
Matches: 99, Mismatches: 21, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
28 3 0.03
29 79 0.80
30 6 0.06
31 11 0.11
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATGGTCATCACC
Found at i:134034415 original size:3 final size:3
Alignment explanation
Indices: 134034402--134034450 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
134034392 ATCGTAAAGC
134034402 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
134034449 AA
1 AA
134034451 CATGCAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:134043738 original size:3 final size:3
Alignment explanation
Indices: 134043732--134043775 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
134043722 TAAAAGTATG
134043732 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
134043776 TCTACAATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:134044632 original size:28 final size:27
Alignment explanation
Indices: 134044564--134044641 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
134044554 GGTTTCTTGG
*
134044564 TTTTTTTGGGGGTTTAGG-TTTTTCTTT
1 TTTTTTTTGGGG-TTAGGTTTTTTCTTT
134044591 TTTTTTTTGGGGTTAGGTTTTTTCTTT
1 TTTTTTTTGGGGTTAGGTTTTTTCTTT
**
134044618 TTTTTATTTTTGGTTAGGTTTTTT
1 TTTTT-TTTGGGGTTAGGTTTTTT
134044642 TTTGGGAGGG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.11
27 25 0.54
28 16 0.35
ACGTcount: A:0.05, C:0.03, G:0.22, T:0.71
Consensus pattern (27 bp):
TTTTTTTTGGGGTTAGGTTTTTTCTTT
Found at i:134045380 original size:30 final size:30
Alignment explanation
Indices: 134045344--134045405 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
134045334 TTTTGAAAAA
134045344 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
134045374 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
134045404 CA
1 CA
134045406 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:134045727 original size:76 final size:73
Alignment explanation
Indices: 134045530--134045838 Score: 293
Period size: 76 Copynumber: 4.1 Consensus size: 73
134045520 AAAATAGATT
* * * * *
134045530 TTGAAAATACCTC-GACATGTGACCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTT
1 TTGAAAATACCTCAG-CGTGTGAGC-AAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* *
134045594 GAAAAATATAAA
63 G-AAAACAGAAA
* * *
134045606 TTGAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
1 TTG---AAAATACCTCAGCGTGTGAGC--AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
134045671 TTGAAAGACAGAAA
61 TTGAAA-ACAGAAA
* *
134045685 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT-AGATTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGAG-CAA-GCTCAACTCACCTCTCGCAATATGAG-TTGATTTTTT
134045749 GAAAACAGAAA
63 GAAAACAGAAA
* ** ** *
134045760 TTGAAAATACCTCAACGTGTCTTG-AAGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGA
1 TTGAAAATACCTCAGCGTGT-GAGCAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
*
134045823 AAATAGAAA
65 AAACAGAAA
134045832 TTGAAAA
1 TTGAAAA
134045839 ATGGAAATTG
Statistics
Matches: 199, Mismatches: 23, Indels: 26
0.80 0.09 0.10
Matches are distributed among these distances:
72 21 0.11
73 25 0.13
74 4 0.02
75 28 0.14
76 56 0.28
77 1 0.01
78 3 0.02
79 31 0.16
80 30 0.15
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAATACCTCAGCGTGTGAGCAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AACAGAAA
Found at i:134045837 original size:13 final size:13
Alignment explanation
Indices: 134045819--134045854 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
134045809 GAGTTGAATT
134045819 TTGAAAATAGAAA
1 TTGAAAATAGAAA
*
134045832 TTGAAAAATGGAAA
1 TTG-AAAATAGAAA
134045846 TTGAAAATA
1 TTGAAAATA
134045855 CCTCGGCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (13 bp):
TTGAAAATAGAAA
Found at i:134045971 original size:84 final size:86
Alignment explanation
Indices: 134045747--134046439 Score: 444
Period size: 90 Copynumber: 8.1 Consensus size: 86
134045737 GATTGATTTT
** * **
134045747 TTGAAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAAGCTCAACTCATTTCTCGCAATATG
1 TTGAAAA-AGAAA-T-AAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
134045810 AGTTGA-ATTTTG-AAAATAGAAA
63 AGTTGATATTTTGAAAAATAGAAA
*
134045832 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAA--GAAA-T-AAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATAT
*
134045897 GAGTTGA-ATTTTGAAAAATATAAA
62 GAGTTGATATTTTGAAAAATAGAAA
* * *
134045921 TTGAAGTAA-AAA-AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 TTGAA-AAAGAAATAAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAG
* * *
134045984 TTGATTTTTTGAAAGACAGAAA
65 TTGATATTTTGAAAAATAGAAA
*
134046006 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTG-AAAA-AGAAA-T-AAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATAT
* *
134046071 GAGTTGATTTTTTTGAAAGATAGAAA
62 GAGTTGA-TATTTTGAAAAATAGAAA
* * * * *
134046097 TT------G----AAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAAAGAAATAAAATACCTCGGCGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAG
** * * *
134046151 TCAATTTTTTTTGAAAGACAGAAA
65 TTGA--TATTTTGAAAAATAGAAA
* * * * *
134046175 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAA--GAAA-T-AAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATAT
* * *
134046240 GAGTTGACTTTTTTG-ACAACAGAAA
62 GAGTTGA-TATTTTGAAAAATAGAAA
* * *
134046265 TT------GAAAT----TACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAAAGAAATAAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
* ***
134046318 TGATTTTTTTTGAAAGGCAGAAA
66 TGA--TATTTTGAAAAATAGAAA
* * ** *
134046341 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGT-CT-TGAGGCTCAACTCATTTCTCACAATAT
1 TTGAAAAA--GAAA-T-AAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATAT
* *
134046404 GAGTTGATTTTTTTTTTGAAAAACAGAAA
62 GAGTTGA----TATTTTGAAAAATAGAAA
134046433 TTGAAAA
1 TTGAAAA
134046440 TACCTCAACA
Statistics
Matches: 500, Mismatches: 58, Indels: 93
0.77 0.09 0.14
Matches are distributed among these distances:
74 33 0.07
75 7 0.01
76 22 0.04
77 45 0.09
78 20 0.04
81 1 0.00
82 4 0.01
83 1 0.00
84 57 0.11
85 25 0.05
86 26 0.05
87 7 0.01
88 37 0.07
89 14 0.03
90 107 0.21
91 26 0.05
92 67 0.13
93 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (86 bp):
TTGAAAAAGAAATAAAATACCTCGGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
TGATATTTTGAAAAATAGAAA
Found at i:134046011 original size:14 final size:14
Alignment explanation
Indices: 134045992--134046026 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
134045982 AGTTGATTTT
*
134045992 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
134046006 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
134046020 TTGAAAA
1 TTGAAAA
134046027 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:134046056 original size:90 final size:89
Alignment explanation
Indices: 134045750--134046103 Score: 463
Period size: 84 Copynumber: 4.0 Consensus size: 89
134045740 TGATTTTTTG
* * **
134045750 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAAGCTCAACTCATTTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
134045813 TGAATTTTGAAA-ATAGAAATTGA
66 TGAATTTTGAAAGATAGAAATTGA
** * *
134045836 AAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
* *
134045901 TGAATTTTGAAAAATATAAATTGA
66 TGAATTTTGAAAGATAGAAATTGA
** *
134045925 AGTA-A-AAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
* *
134045985 TGATTTTTTGAAAGACAGAAATTGA
66 TGA-ATTTTGAAAGATAGAAATTGA
* *
134046010 AAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
*
134046075 TGATTTTTTTGAAAGATAGAAATTGA
66 TGA--ATTTTGAAAGATAGAAATTGA
134046101 AAA
1 AAA
134046104 TAGCTCAGCG
Statistics
Matches: 233, Mismatches: 25, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
84 52 0.22
85 19 0.08
86 27 0.12
87 7 0.03
88 40 0.17
89 12 0.05
90 52 0.22
91 24 0.10
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (89 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
TGAATTTTGAAAGATAGAAATTGA
Found at i:134046070 original size:174 final size:167
Alignment explanation
Indices: 134045671--134046510 Score: 912
Period size: 169 Copynumber: 5.0 Consensus size: 167
134045661 AGTTGATTTT
* * * * * * **
134045671 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
134045736 -AGATTGATTTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAAGCTCAACTCAT
66 GAG-TTGATTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCAC
* * *
134045797 TTCTCGCAATATGAGTTGA--ATTTTGAAA-ATAGAAA
130 CTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
*
134045832 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
134045897 GAGTTGA-ATTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAAGCT
66 GAGTTGATTTTTTGAAAAATAGAAATT---G------AAAATACCTCAGCGTGTGACCTGAAGCT
134045961 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAA
122 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
*
134046006 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
134046071 GAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGCTCAGCGCGTGAGCC--AAGGCTCAACTC
66 GAGTTGA-TTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAA-GCTCAACTC
**
134046134 ACCTCTCGCAATATGAGTCAATTTTTTTTGAAAGACAGAAA
128 ACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAA
* * * *
134046175 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
134046240 GAGTTGACTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCAC
66 GAGTTGA-TTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCAC
*
134046302 CTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAA
130 CTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAA
* ** *
134046341 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGT-CT-TGAGGCTCAACTCATTTCTCACAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
134046404 GAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACT
66 GAGTTGA----TTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACT
* ** * *
134046467 AATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ATAGAAA
127 CACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
134046505 TTGAAA
1 TTGAAA
134046511 TTACCTCAGC
Statistics
Matches: 585, Mismatches: 67, Indels: 51
0.83 0.10 0.07
Matches are distributed among these distances:
160 5 0.01
161 70 0.12
162 2 0.00
164 40 0.07
165 10 0.02
166 83 0.14
167 52 0.09
168 83 0.14
169 92 0.16
170 15 0.03
172 32 0.05
173 9 0.02
174 76 0.13
176 16 0.03
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (167 bp):
TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
Found at i:134046133 original size:77 final size:78
Alignment explanation
Indices: 134046006--134046181 Score: 255
Period size: 77 Copynumber: 2.3 Consensus size: 78
134045996 AAGACAGAAA
* * * * **
134046006 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
**
134046071 GAGTTGA-TTTTT
66 GAGTCAATTTTTT
* *
134046083 TTGAAAGATAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
134046148 GAGTCAATTTTTT
66 GAGTCAATTTTTT
134046161 TTGAAAGACAGAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
134046182 ACGGAAATTG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 62 0.71
78 25 0.29
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (78 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCAATTTTTT
Found at i:134046180 original size:14 final size:14
Alignment explanation
Indices: 134046161--134046195 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
134046151 TCAATTTTTT
*
134046161 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
134046175 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
134046189 TTGAAAA
1 TTGAAAA
134046196 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:134046252 original size:92 final size:90
Alignment explanation
Indices: 134046093--134046270 Score: 223
Period size: 92 Copynumber: 2.0 Consensus size: 90
134046083 TTGAAAGATA
* * * *
134046093 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCAATTT
1 GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATACGAGTCAA-CT
134046158 TTTTTGAAAGACAGAAATTGAAAAACG
65 TTTTTGAAA-ACAGAAATTGAAAAACG
* * * * **
134046185 GAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACT
1 GAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATACGAGTCAACT
*
134046249 TTTTTGACAACAGAAATTGAAA
65 TTTTTGAAAACAGAAATTGAAA
134046271 TTACCTCAGC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
90 13 0.18
91 11 0.15
92 50 0.68
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (90 bp):
GAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATACGAGTCAACTT
TTTTGAAAACAGAAATTGAAAAACG
Found at i:134046310 original size:74 final size:76
Alignment explanation
Indices: 134046185--134046347 Score: 224
Period size: 74 Copynumber: 2.1 Consensus size: 76
134046175 TTGAAAAACG
* *
134046185 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-CT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCT
134046249 TTTTTGACAA-CA
65 TTTTTGA-AAGCA
* * * *
134046261 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
134046325 TTTTGAAAGGCA
66 TTTTGAAA-GCA
134046337 GAAATTGAAAA
1 GAAATTGAAAA
134046348 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
74 35 0.45
75 8 0.10
76 34 0.44
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATCTT
TTTTGAAAGCA
Found at i:134046333 original size:335 final size:328
Alignment explanation
Indices: 134045671--134046510 Score: 962
Period size: 335 Copynumber: 2.5 Consensus size: 328
134045661 AGTTGATTTT
* * * * * **
134045671 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* ** **
134045736 -AGATTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAGCTCAACTCATTT
66 GAG-TTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGCGTCGAGAAGCTCAACTCACCT
* * *
134045799 CTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGT
130 CTCGCAATATGAGTTCAATTTTGAAAACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGT
* * * * *
134045864 GTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAAATATAAATTGAAGTA
195 GTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGAATTTTGAAAAACAGAAATT--AG--
* *
134045929 AAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
256 ---AAAAATACCTCAGCGTGT-ACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
134045994 GAAAGACAGAAA
317 GAAAGACAGAAA
134046006 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
134046071 GAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGCTCAGCGCGT-GAGCCAAGGCTCAACTCA
66 GAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAACGCGTCGAG--AA-GCTCAACTCA
134046135 CCTCTCGCAATATGAG-TCAATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATAC
127 CCTCTCGCAATATGAGTTCAA----TTTTGAAA-ACAGAAATTGAAAAACGGAAATTGAAAATAC
* * *
134046199 CTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTG-ACAACAGA
187 CTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA--ATTTTGAAAAACAGA
* *
134046263 AATT-G-AAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
250 AATTAGAAAAATACCTCAGCGTGTACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
134046325 TTTTGAAAGGCAGAAA
313 TTTTGAAAGACAGAAA
* * ** *
134046341 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGT-CT-TGAGGCTCAACTCATTTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
** ** * *
134046404 GAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAA
66 GAGTTGA---TTTTTTTG-AAAACAGAAATTGAAAATACCTCAACGCGTCGAGAAGCTCAACTCA
** * *
134046469 TTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAA
127 CCTCTCGCAATATGAGTTCAATTTTGAAAACAGAAATTGAAA
134046511 TTACCTCAGC
Statistics
Matches: 435, Mismatches: 49, Indels: 47
0.82 0.09 0.09
Matches are distributed among these distances:
330 12 0.03
331 8 0.02
333 65 0.15
334 24 0.06
335 131 0.30
336 43 0.10
337 27 0.06
338 5 0.01
339 24 0.06
341 1 0.00
342 8 0.02
343 73 0.17
344 9 0.02
345 5 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (328 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGCGTCGAGAAGCTCAACTCACCTC
TCGCAATATGAGTTCAATTTTGAAAACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTG
TGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGAATTTTGAAAAACAGAAATTAGAAAAA
TACCTCAGCGTGTACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAG
AAA
Found at i:134046472 original size:78 final size:73
Alignment explanation
Indices: 134046341--134046543 Score: 273
Period size: 78 Copynumber: 2.7 Consensus size: 73
134046331 AAGGCAGAAA
* *
134046341 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
134046406 GTTGATTTTTTTT
66 GTTGA-----ATT
* * * *
134046419 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
134046484 GTTGAATT
66 GTTGAATT
* *
134046492 TTG-AAAATAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
134046544 TGAACAGAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
72 44 0.39
73 5 0.04
78 64 0.57
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGAATT
Found at i:134046639 original size:121 final size:121
Alignment explanation
Indices: 134046425--134046664 Score: 444
Period size: 121 Copynumber: 2.0 Consensus size: 121
134046415 TTTTTTGAAA
134046425 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
134046490 TTTTGAAAATAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
134046546 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
134046611 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
134046665 CTCACAATAT
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 115 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:134046739 original size:77 final size:72
Alignment explanation
Indices: 134046546--134046889 Score: 508
Period size: 72 Copynumber: 4.7 Consensus size: 72
134046536 ACTCATTTTG
* *
134046546 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
134046611 TTTTGAA
66 TTTTGAA
* *
134046618 AATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
134046683 TTTTTTTTGAA
66 ----TTTTGAA
* *
134046694 AGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
1 A-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
*
134046759 TTTTTTTTGAAA
65 ---ATTTTG-AA
* * * *
134046771 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
134046836 TTTTGAA
66 TTTTGAA
134046843 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
134046890 TGAACAGAAA
Statistics
Matches: 250, Mismatches: 13, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
72 109 0.44
73 5 0.02
76 74 0.30
77 62 0.25
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
TTTTGAA
Found at i:134046909 original size:49 final size:49
Alignment explanation
Indices: 134046843--134046938 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
134046833 GAATTTTGAA
*
134046843 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
134046892 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
134046939 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:134046924 original size:121 final size:121
Alignment explanation
Indices: 134046771--134047010 Score: 435
Period size: 121 Copynumber: 2.0 Consensus size: 121
134046761 TTTTTTGAAA
*
134046771 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
134046836 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
134046892 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
134046957 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
134047011 CTCGCAATAT
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 114 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:134046972 original size:72 final size:72
Alignment explanation
Indices: 134046892--134047104 Score: 408
Period size: 72 Copynumber: 3.0 Consensus size: 72
134046882 ACTCATTTTG
134046892 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
134046957 TTTTGAA
66 TTTTGAA
134046964 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
134047029 TTTTGAA
66 TTTTGAA
* *
134047036 AACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTTCTTGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
134047101 TTTT
66 TTTT
134047105 TTTTTTGAAA
Statistics
Matches: 139, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 139 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:134046986 original size:346 final size:347
Alignment explanation
Indices: 134046185--134047189 Score: 1425
Period size: 346 Copynumber: 2.9 Consensus size: 347
134046175 TTGAAAAACG
* ** * **** * *
134046185 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTT
1 GAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--A
* * * **
134046250 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
62 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* *
134046315 AGTTG-ATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTCTTG
127 AGTTGAATTTTTTTT--------GAAA--G----ACAGAAATTGAAAATACCTCAGCGTGTCTTG
134046379 AGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACC
178 AGGCTCAACTCATTTCTCACAATATGAGTTGA-TTTTTTTTTGAAAAACAGAAATTGAAAATACC
* *
134046444 TCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGA
242 TCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
134046509 AATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACA
307 AATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTGAACA
134046550 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
* *
134046615 GAAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
66 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
*
134046680 GAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
131 GAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
134046745 ACAATATGAGTTGA-TTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTC
196 ACAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTC
134046809 AACTAATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTT
261 AACTAATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTT
134046874 GAGGCTCAACTCATTTTGAACA
326 GAGGCTCAACTCATTTTGAACA
134046896 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
134046961 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
66 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* * * *
134047026 GAA----TTTTGAAA-ACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTTCTT
131 GAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
* * * *
134047086 GCAATATGAGTTGAATTTTTTTTTTGAAAGACGGAAATTGAAAATACCTCAGCATGTGAAC-CGA
196 ACAATATGAGTTG-A-TTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGT---CTTGA
* ** *
134047150 GGCTCAACTCACCTCTCGCAATATGAGCTG-ATTTTGAAAA
256 GGCTCAACTAATTTCTCGCAATATGAGTTGAATTTTGAAAA
134047190 AGTAGAAATT
Statistics
Matches: 596, Mismatches: 37, Indels: 34
0.89 0.06 0.05
Matches are distributed among these distances:
341 56 0.09
342 9 0.02
344 38 0.06
345 10 0.02
346 294 0.49
347 1 0.00
348 60 0.10
352 1 0.00
354 4 0.01
361 63 0.11
362 9 0.02
363 30 0.05
365 21 0.04
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (347 bp):
GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
ACAATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTC
AACTAATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTT
GAGGCTCAACTCATTTTGAACA
Found at i:134047029 original size:193 final size:195
Alignment explanation
Indices: 134046696--134047082 Score: 643
Period size: 193 Copynumber: 2.0 Consensus size: 195
134046686 TTTTTGAAAG
*
134046696 ACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA--
* *
134046761 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAAT
64 TATTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAAT
* *
134046826 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTT
129 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTTT
134046891 GA
194 GA
* * *
134046893 ACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-A
1 ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATA
* * *
134046957 TTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
66 TTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATAT
134047021 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTT
131 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTT
134047083 CTTGCAATAT
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
193 115 0.64
194 5 0.03
197 59 0.33
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (195 bp):
ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATA
TTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATAT
GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTATTGAGGCTCAACTCATTTTGA
Found at i:134047265 original size:13 final size:13
Alignment explanation
Indices: 134047238--134047271 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
134047228 GAGTTGATTC
*
134047238 TTGAACAACATAAA
1 TTGAA-AACAGAAA
134047252 TTGAAAACAGAAA
1 TTGAAAACAGAAA
134047265 TTGAAAA
1 TTGAAAA
134047272 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:134047319 original size:140 final size:140
Alignment explanation
Indices: 134047109--134047875 Score: 1367
Period size: 140 Copynumber: 5.5 Consensus size: 140
134047099 AATTTTTTTT
*
134047109 TTGAAAGACGGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
*
134047173 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCTACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
134047238 TTGAACAACATAAA
127 TTGAACAACGTAAA
*
134047252 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAAGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
134047317 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
134047382 ACAACGTAAA
131 ACAACGTAAA
*
134047392 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATAAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
134047457 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
134047522 ACAACGTAAA
131 ACAACGTAAA
* * *
134047532 CTGAAAACAGAAATTGAAAATACCTGAGCGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
134047597 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
134047662 ACAACGTAAA
131 ACAACGTAAA
*
134047672 TTG-AAACAGAAATTGAAAATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
134047736 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCTCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
134047801 ACAACTTAAA
131 ACAACGTAAA
134047811 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
134047876 TTGAAATTAA
Statistics
Matches: 603, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
139 137 0.23
140 438 0.73
142 22 0.04
143 6 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:134047393 original size:54 final size:54
Alignment explanation
Indices: 134047293--134047398 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
134047283 GACCTGAAGC
*
134047293 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
134047347 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
134047399 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:134047812 original size:54 final size:55
Alignment explanation
Indices: 134047712--134047817 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
134047702 GACTTGAGGC
* *
134047712 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAACTAGAAATTGAAAAGGT
* * * *
134047766 TCAACCCACCTCTCTCAATATGAGTTGATTCTTGAACAACT-TAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAACTAGAAATTGAAAA
134047818 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 32 0.73
55 12 0.27
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAACTAGAAATTGAAAAGGT
Found at i:134047897 original size:72 final size:71
Alignment explanation
Indices: 134047808--134047973 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
134047798 TGAACAACTT
* * * **
134047808 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAACAATAT
134047873 GAGTTG
66 GAGTTG
*
134047879 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAACAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAACAATA
134047944 TGAGTTG
65 TGAGTTG
**
134047951 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
134047974 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAACAATAT
GAGTTG
Found at i:134053675 original size:40 final size:40
Alignment explanation
Indices: 134053616--134053784 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
134053606 CGGGACTTTA
* * *
134053616 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
134053656 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
134053696 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
134053736 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
134053776 CCCGGATAT
1 CCCGGATAT
134053785 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:134061705 original size:40 final size:40
Alignment explanation
Indices: 134061646--134061814 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
134061636 CGGGACTTTA
* * *
134061646 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
134061686 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
134061726 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
134061766 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
134061806 CCCGGATAT
1 CCCGGATAT
134061815 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:134069856 original size:29 final size:29
Alignment explanation
Indices: 134069824--134069896 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
134069814 CTTCGAGCTC
* *
134069824 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
134069853 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
134069882 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
134069897 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:134071567 original size:17 final size:18
Alignment explanation
Indices: 134071525--134071573 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
134071515 AGTTGAAAAG
134071525 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
134071544 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
134071561 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
134071574 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:134072462 original size:40 final size:40
Alignment explanation
Indices: 134072396--134072562 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
134072386 AAATTGAATG
* * *
134072396 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
134072435 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
134072475 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
134072515 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
134072555 ATATCCGG
1 ATATCCGG
134072563 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:134074307 original size:11 final size:11
Alignment explanation
Indices: 134074293--134074332 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
134074283 CTTCATATTC
134074293 TCTTTCTTTTT
1 TCTTTCTTTTT
134074304 TCTTT-TTTTT
1 TCTTTCTTTTT
*
134074314 TCATTTCTTTAT
1 TC-TTTCTTTTT
134074326 TCTTTCT
1 TCTTTCT
134074333 ACATAATCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 7 0.27
11 13 0.50
12 6 0.23
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (11 bp):
TCTTTCTTTTT
Found at i:134081269 original size:29 final size:29
Alignment explanation
Indices: 134081243--134081315 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
134081233 TTTTCAGCTT
* *
134081243 GCACACATAGTGTCATATTTTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
*
134081272 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
134081301 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
134081316 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAC
Found at i:134089326 original size:29 final size:29
Alignment explanation
Indices: 134089265--134089366 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
134089255 CCTTCGAGCT
** * *
134089265 CGCACACCCAGTGCCGTATTTTT-CAGCT
1 CGCACACTTAGTGCCATATTTTTCCAGCA
* * *
134089293 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTTCCAGCA
*
134089322 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATTTTTCCAGCA
134089351 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
134089367 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 18 0.29
29 45 0.71
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATTTTTCCAGCA
Found at i:134098334 original size:41 final size:40
Alignment explanation
Indices: 134098277--134098456 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
134098267 TCGAATGGTG
* * * *
134098277 TCCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAA
* *
134098318 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* * *
134098358 ACCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
134098398 TCCGGGTTAAGTCCCGAAGGCATTTGTGGGAATCACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
* *
134098439 -CCGGGCTACGTCCCGAAG
1 TCCGGGTTAAGTCCCGAAG
134098457 ACAATCGAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 93 0.77
41 28 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:134098413 original size:80 final size:80
Alignment explanation
Indices: 134098278--134098486 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
134098268 CGAATGGTGT
* * * * *
134098278 CCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAATTCCCGAAGGCATTT
1 CCGGGATAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
134098343 GTGCGAGTTACTAAAA
65 GTGCGAATCACTAAAA
* *
134098359 CCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGATAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
* *
134098424 TGGGAATCACTATAA
66 TGCGAATCACTAAAA
* * * * * * *
134098439 CCGGGCTACGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA
1 CCGGGATAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAA
134098487 ATTCCAAAGG
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
79 6 0.06
80 79 0.72
81 24 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGATAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATCACTAAAA
Found at i:134106380 original size:41 final size:40
Alignment explanation
Indices: 134106298--134106476 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
134106288 TCGAATGGTG
* * * *
134106298 TCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
134106338 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
134106379 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
134106418 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATCACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
134106459 -CCGGGCTATGTCCCGAAG
1 TCCGGGTTAAGTCCCGAAG
134106477 AAATCGAGCG
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.03
40 99 0.80
41 20 0.16
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:134106438 original size:80 final size:81
Alignment explanation
Indices: 134106299--134106476 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 81
134106289 CGAATGGTGT
* *
134106299 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTT
* *
134106363 GTGCGAGTTACTAAAA
66 GTGCGAATCACTAAAA
* * * * *
134106379 TCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTT
*
134106443 GTGCGAATCACTATAA
66 GTGCGAATCACTAAAA
*
134106459 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
134106477 AAATCGAGCG
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 70 0.83
81 14 0.17
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTTAAGTCCCAAAGGCATTT
GTGCGAATCACTAAAA
Found at i:134113235 original size:37 final size:40
Alignment explanation
Indices: 134113118--134113259 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
134113108 TCGTTCAAAC
* * ** **
134113118 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACCCGCACAATT
* * ***
134113158 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACCCGCACAATT
134113198 GCCTTCGGG-CTTAGCCCGGATAT-ATAA-CCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACCCGCACAATT
134113235 GCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
134113260 CTCGAACATT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
37 31 0.36
38 4 0.05
39 13 0.15
40 38 0.44
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACCCGCACAATT
Found at i:134121123 original size:39 final size:39
Alignment explanation
Indices: 134121061--134121165 Score: 165
Period size: 39 Copynumber: 2.7 Consensus size: 39
134121051 CCCGCAAAAG
* * *
134121061 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATT
*
134121101 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
134121140 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
134121166 TCGAACATTC
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 51 0.85
40 9 0.15
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATT
Found at i:134127676 original size:18 final size:19
Alignment explanation
Indices: 134127653--134127692 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
134127643 ATAAGAAAAG
*
134127653 ACAAAAAAAAA-GAGGACA
1 ACAAAAAAAAATGAGCACA
134127671 ACAAAAAAAAATGAGCACA
1 ACAAAAAAAAATGAGCACA
134127690 ACA
1 ACA
134127693 GCACAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.70, C:0.15, G:0.12, T:0.03
Consensus pattern (19 bp):
ACAAAAAAAAATGAGCACA
Found at i:134127679 original size:19 final size:19
Alignment explanation
Indices: 134127655--134127692 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
134127645 AAGAAAAGAC
*
134127655 AAAAAAAAAGAGGACAACA
1 AAAAAAAAAGAGCACAACA
*
134127674 AAAAAAAATGAGCACAACA
1 AAAAAAAAAGAGCACAACA
134127693 GCACAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.13, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAGAGCACAACA
Found at i:134131481 original size:68 final size:65
Alignment explanation
Indices: 134131371--134131621 Score: 203
Period size: 68 Copynumber: 3.8 Consensus size: 65
134131361 ATACAGATGG
** * * * * *
134131371 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGGGTACACCATGTAG-ACAAGAGAGCTAC-AGAG
134131434 ATTA
63 A-TA
134131438 TGATGTAGCTAGGTCACATGGGTGGTACTATGGGTACACCATGTAGACAAGAGAGCTACAG-GAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGGGTACACCATGTAGACAAGAGAGCTACAGAGAT
134131502 A
65 A
* ** * *
134131503 TATGTAGCTAGGTCGCATACGTGGTTCCAGGTGAAGG-ACACCATGTAGACAAGAGAGCTAC-GA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG--GGTACACCATGTAGACAAGAGAGCTACAGA
134131566 GATA
62 GATA
* * * *
134131570 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGA
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGGGTACACCATGTAG-ACAAGAGA
134131622 TCCGAACTAT
Statistics
Matches: 152, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
62 2 0.01
63 16 0.11
64 24 0.16
65 3 0.02
66 22 0.14
67 33 0.22
68 51 0.34
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGGGTACACCATGTAGACAAGAGAGCTACAGAGATA
Found at i:134134262 original size:49 final size:49
Alignment explanation
Indices: 134134192--134134451 Score: 436
Period size: 49 Copynumber: 5.3 Consensus size: 49
134134182 CCCTTCGGGA
134134192 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134134239 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
134134288 CTTATCACATATATACACACTTTCACATTCTTCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
134134337 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
134134386 CTTATCACATATATACGA-ACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
134134435 CTTATCACATATATATA
1 CTTATCACATATATATA
134134452 TATATATCTC
Statistics
Matches: 202, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
47 10 0.05
48 2 0.01
49 189 0.94
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:134137456 original size:14 final size:14
Alignment explanation
Indices: 134137437--134137463 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
134137427 GGTACGAGTA
134137437 AGGGGTGTTACATG
1 AGGGGTGTTACATG
134137451 AGGGGTGTTACAT
1 AGGGGTGTTACAT
134137464 TATTATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.41, T:0.30
Consensus pattern (14 bp):
AGGGGTGTTACATG
Found at i:134141614 original size:14 final size:14
Alignment explanation
Indices: 134141595--134141630 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
134141585 GGGTGAATCA
134141595 ACAATTCAGATCTG
1 ACAATTCAGATCTG
*
134141609 ACAATTTAGATCTG
1 ACAATTCAGATCTG
134141623 ACAATTCA
1 ACAATTCA
134141631 AGAAGAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (14 bp):
ACAATTCAGATCTG
Found at i:134141966 original size:5 final size:5
Alignment explanation
Indices: 134141947--134141980 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
134141937 TTAATTAAGT
134141947 TTTATA TTT-A TTTAA TTTAA TTTAA TTTAA TTTA
1 TTTA-A TTTAA TTTAA TTTAA TTTAA TTTAA TTTA
134141981 GGTTTGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 20 0.74
6 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTTAA
Found at i:134147350 original size:33 final size:32
Alignment explanation
Indices: 134147300--134147444 Score: 139
Period size: 33 Copynumber: 4.4 Consensus size: 32
134147290 AATGGACGTA
* * * *
134147300 ACCTTTTCCAGTCGTACACTCGAGGTGTACATT
1 ACCTTTTCAAGTGGTACACTCAAAGTGTACA-T
* *
134147333 CCCTTTTCAAGTGGTACACTCAAAGTGTACGT
1 ACCTTTTCAAGTGGTACACTCAAAGTGTACAT
* * *
134147365 ATCCTTTTCAAGTTGTTCACACAAAGTGTACAT
1 A-CCTTTTCAAGTGGTACACTCAAAGTGTACAT
* *
134147398 AGCCTTTTCAATTTGTACA-TACAAAGTGTACAT
1 A-CCTTTTCAAGTGGTACACT-CAAAGTGTACAT
134147431 AACCTTTTCAAGTG
1 -ACCTTTTCAAGTG
134147445 TACCATTTAG
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.01
33 90 0.98
34 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (32 bp):
ACCTTTTCAAGTGGTACACTCAAAGTGTACAT
Found at i:134152251 original size:26 final size:25
Alignment explanation
Indices: 134152207--134152274 Score: 100
Period size: 26 Copynumber: 2.7 Consensus size: 25
134152197 GAGGAAGTGC
*
134152207 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
134152232 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
134152258 AAAAAGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
134152275 ATTATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
25 17 0.44
26 22 0.56
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:134152535 original size:31 final size:31
Alignment explanation
Indices: 134152497--134152580 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
134152487 TTGCTACAGT
* *
134152497 AAAGGCTTCAGCTCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
134152528 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
134152559 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
134152581 CTGAGCTTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:134156900 original size:29 final size:29
Alignment explanation
Indices: 134156875--134156950 Score: 143
Period size: 29 Copynumber: 2.6 Consensus size: 29
134156865 ACATGGCTCA
134156875 TTAGGCCCAAATCACATTTATATGGCCCT
1 TTAGGCCCAAATCACATTTATATGGCCCT
134156904 TTAGGCCCAAATCACATTTATATGGCCCT
1 TTAGGCCCAAATCACATTTATATGGCCCT
*
134156933 TTAGTCCCAAATCACATT
1 TTAGGCCCAAATCACATT
134156951 AAATTCATGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.32
Consensus pattern (29 bp):
TTAGGCCCAAATCACATTTATATGGCCCT
Found at i:134156913 original size:57 final size:58
Alignment explanation
Indices: 134156836--134156950 Score: 133
Period size: 58 Copynumber: 2.0 Consensus size: 58
134156826 CACATACTTG
* * *
134156836 TATATGGCCCACTAGACCC-AATTATATTCACATGGCTCATTAGGCCCAAATCACATT
1 TATATGGCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACATT
** * * * * *
134156893 TATATGGCCCTTTAGGCCCAAATCACATTTATATGGCCCTTTAGTCCCAAATCACATT
1 TATATGGCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACATT
134156951 AAATTCATGC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
57 16 0.34
58 31 0.66
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (58 bp):
TATATGGCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACATT
Found at i:134162315 original size:80 final size:80
Alignment explanation
Indices: 134162231--134162379 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
134162221 TATGGTAACC
* * * *
134162231 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
134162295 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
134162311 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
134162376 CCGG
66 CCGG
134162380 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:134162321 original size:40 final size:38
Alignment explanation
Indices: 134162272--134162379 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
134162262 ATCACGATTT
*
134162272 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
134162312 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
134162352 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
134162380 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:134171827 original size:2 final size:2
Alignment explanation
Indices: 134171820--134171849 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
134171810 TCTCCACCTT
134171820 TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
134171850 TTTAATTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:134176011 original size:35 final size:35
Alignment explanation
Indices: 134175920--134176014 Score: 172
Period size: 35 Copynumber: 2.7 Consensus size: 35
134175910 CATGGAAAAG
* *
134175920 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
134175955 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
134175990 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
134176015 AAATCCATAC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:134176074 original size:76 final size:73
Alignment explanation
Indices: 134175924--134176087 Score: 192
Period size: 76 Copynumber: 2.2 Consensus size: 73
134175914 GAAAAGTGTG
*** * *
134175924 AAATGTAGGTATGG---TATCATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATACT
1 AAATGTAGGTATGGTATTATCATCCATACTGAGTTAAAAAATGTAGGTATGGCATTATCCATACC
**
134175986 GAGCTGTG
66 GAGCTGAA
134175994 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAAAAATGTAGGTATGGCATT-TCCCA
1 AAATGTAGGTATGGTATTATC--ATCCATACTGAGTT-AAAAAATGTAGGTATGGCATTAT-CCA
*
134176058 TACCGAGTTGAA
62 TACCGAGCTGAA
134176070 AAATGTAGGTATGGTATT
1 AAATGTAGGTATGGTATT
134176088 TCACTGAGGA
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
70 14 0.18
73 4 0.05
75 15 0.19
76 46 0.58
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (73 bp):
AAATGTAGGTATGGTATTATCATCCATACTGAGTTAAAAAATGTAGGTATGGCATTATCCATACC
GAGCTGAA
Found at i:134176079 original size:35 final size:35
Alignment explanation
Indices: 134175924--134176089 Score: 165
Period size: 35 Copynumber: 4.6 Consensus size: 35
134175914 GAAAAGTGTG
* **
134175924 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
134175959 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
*
134175994 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAAA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTT-GAA
* *
134176035 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
134176070 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
134176090 ACTGAGGAAA
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
35 73 0.64
36 11 0.10
40 13 0.11
41 17 0.15
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:134177915 original size:23 final size:23
Alignment explanation
Indices: 134177889--134177983 Score: 70
Period size: 23 Copynumber: 4.3 Consensus size: 23
134177879 TAGGTTTTTC
134177889 TTTTTTGTTTTTTTAGGTTAGGT
1 TTTTTTGTTTTTTTAGGTTAGGT
*****
134177912 TTTTTTGGGGGGTTAGGTT---T
1 TTTTTTGTTTTTTTAGGTTAGGT
* * * *
134177932 TTTCTTCTTTTTTTGGGTTAGTT
1 TTTTTTGTTTTTTTAGGTTAGGT
* *
134177955 TTTTTTTTTTTTTTTGGTTAGGT
1 TTTTTTGTTTTTTTAGGTTAGGT
134177978 TTTTTT
1 TTTTTT
134177984 TGGAGGGCTT
Statistics
Matches: 52, Mismatches: 17, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
20 12 0.23
23 40 0.77
ACGTcount: A:0.05, C:0.02, G:0.22, T:0.71
Consensus pattern (23 bp):
TTTTTTGTTTTTTTAGGTTAGGT
Found at i:134177966 original size:24 final size:24
Alignment explanation
Indices: 134177921--134177984 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 24
134177911 TTTTTTTGGG
*
134177921 GGGTTAGGTTTTTTCTTCTTTTTTT
1 GGGTTA-GTTTTTTTTTCTTTTTTT
134177946 GGGTTAGTTTTTTTTT-TTTTTTT
1 GGGTTAGTTTTTTTTTCTTTTTTT
* *
134177969 TGGTTAGGTTTTTTTT
1 GGGTTAGTTTTTTTTT
134177985 GGAGGGCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 21 0.58
24 9 0.25
25 6 0.17
ACGTcount: A:0.05, C:0.03, G:0.20, T:0.72
Consensus pattern (24 bp):
GGGTTAGTTTTTTTTTCTTTTTTT
Found at i:134177984 original size:23 final size:24
Alignment explanation
Indices: 134177921--134177984 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
134177911 TTTTTTTGGG
134177921 GGGTTAGGTTTTTTCTTCTTTTTTT
1 GGGTTAGGTTTTTT-TTCTTTTTTT
*
134177946 GGGTTA-GTTTTTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTCTTTTTTT
*
134177969 TGGTTAGGTTTTTTTT
1 GGGTTAGGTTTTTTTT
134177985 GGAGGGCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 14 0.39
24 16 0.44
25 6 0.17
ACGTcount: A:0.05, C:0.03, G:0.20, T:0.72
Consensus pattern (24 bp):
GGGTTAGGTTTTTTTTCTTTTTTT
Found at i:134178878 original size:169 final size:167
Alignment explanation
Indices: 134178646--134179402 Score: 581
Period size: 168 Copynumber: 4.5 Consensus size: 167
134178636 TTAAAAACAG
**
134178646 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * * ** *
134178711 TTTGAAACT-TAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTGGAGGTTCAACTC
66 TTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTC
*
134178775 ACCTCTCGCAATATGAGTTGAATTTTTTGAAAAAAAAT
131 ACATCTCGCAATATGAGTTGAATTTTTTG-AAAAAAAT
*
134178813 AAGAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA--
1 -A-AATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
134178876 TTTTTGAAAATAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAAC
64 TTTTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAAC
* * *
134178941 TCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATAT
129 TCACATCTCGCAATATGAGTTGAATTTTTTGAAAAAAAT
* * * * *
134178980 AAATTGAAAAAATACCTCAGTATGTAATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAATTG--AAAATAGCTCAGTACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * ** * *
134179044 TTTTTTG--AA-AG-A--T--AGAA-A-A---TGAAAATAGCTC-AGCGCGTGAGCCAAGGCTCA
63 TTTTTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGA-CATGTGACCCGAGGCTCA
* * *
134179095 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACTTAACTTGAAA
127 ACTCACATCTCGCAATATGAGTTGAATTTTTTGAAA---AA----AAT
* * ** *
134179143 AGCAGATTTTGAAAATACCTC-GATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGT
1 A--A-A--TTGAAAATAGCTCAG-TACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGT
* * ** ** * * *
134179206 TGATTTTTTTTTTGAAAAGCAGAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTG
59 TGA---TTTTTTTGAAAA-TAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCG
* * * * * ** * *
134179271 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-TCAACAG
120 AGGCTCAACTCACATCTCGCAATATGAGTTGAATTTTTTGAAAAAAAT
* * * *
134179318 AAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATAGCTCAGTACGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
134179380 TTTTGAAAAACAGAAATTGAAAA
65 TTTTG-AAAATAGAACTTGAAAA
134179403 TACCTCAGCA
Statistics
Matches: 492, Mismatches: 53, Indels: 91
0.77 0.08 0.14
Matches are distributed among these distances:
155 1 0.00
156 59 0.12
159 3 0.01
160 1 0.00
161 3 0.01
163 3 0.01
165 33 0.07
166 53 0.11
167 65 0.13
168 116 0.24
169 71 0.14
170 12 0.02
171 3 0.01
172 1 0.00
173 3 0.01
174 1 0.00
175 2 0.00
176 1 0.00
178 3 0.01
179 2 0.00
180 1 0.00
183 55 0.11
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (167 bp):
AAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTC
ACATCTCGCAATATGAGTTGAATTTTTTGAAAAAAAT
Found at i:134179100 original size:77 final size:79
Alignment explanation
Indices: 134178932--134179130 Score: 260
Period size: 77 Copynumber: 2.5 Consensus size: 79
134178922 ATGTGACCCG
* * * *
134178932 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAAATG-AAAAATACCT
* * * *
134178997 CAGTATGTAATCTGA
65 CAGCACGTAAGCTCA
* *
134179012 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAAATG-AAAATAGCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAAATGAAAAATACCTC
* *
134179075 AGCGCGTGAGC-CA
66 AGCACGTAAGCTCA
134179088 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
134179131 CTTAACTTGA
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
76 2 0.02
77 56 0.53
79 47 0.44
80 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (79 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAAATGAAAAATACCTC
AGCACGTAAGCTCA
Found at i:134179197 original size:245 final size:252
Alignment explanation
Indices: 134178675--134179402 Score: 714
Period size: 257 Copynumber: 2.9 Consensus size: 252
134178665 GCGTGAGCCA
* ** * *** **
134178675 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAACTTAACTTGAAAAGCAGATTT
1 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTTG-AACAGAAATTGAAAAATGGA-AA
* * * * *
134178739 TGAAAATACCTC-GATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
64 T-AAAATACCTCAG-CATGTAACCT-GAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * *
134178802 TGAAAAAAAATAAGAATTGAAAATAGCTCAGTACGTGAGCCAAGGCTCAACTCACTTCTCGCAAT
126 TG--AAAAAAGAA-AA-TGAAAATAGCTCAG-GCGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
*
134178867 ATGAGTTGA--TTTTTGAAAATAGAATTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACC
186 ATGAGTTGATTTTTTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACC
134178930 CG
251 CG
* * *
134178932 AGGCTCAACTCACATCTCGCAATGTGAGTTGA-TTTTTTTG-A-A-AAA-T-ATAAATTG-AA-A
1 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTTGAACAGAAATTGAAAAATGGAAATA
* *
134178989 AAATACCTCAGTATGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
66 AAATACCTCAGCATGTAACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
*
134179054 GATAGAAAATGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
131 -AAAGAAAATGAAAATAGCTCAG-GCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * **
134179119 ATTTTTTTGAAACT-TAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTGG
194 ATTTTTTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCG
* *
134179177 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAGCAGAAATTGAAAAATGG
1 AGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTTTTG--AA-CAGAAATTGAAAAATGG
* * * * * * *
134179242 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTT
61 AAA-T-AAAATACCTCAGCATGTAACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
** * * * * * *
134179307 TTTGTCAACAGAAATTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
124 TTTGAAAAAAGAAAATGAAAATAGCTCAGGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
* *
134179370 GAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
188 GAGTTGATTTTTTTG-AAAATAGAACTTGAAAA
134179403 TACCTCAGCA
Statistics
Matches: 396, Mismatches: 52, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
244 54 0.14
245 72 0.18
246 14 0.04
247 54 0.14
248 11 0.03
251 5 0.01
252 1 0.00
253 3 0.01
254 3 0.01
255 2 0.01
256 8 0.02
257 85 0.21
258 3 0.01
259 26 0.07
260 55 0.14
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (252 bp):
AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTTGAACAGAAATTGAAAAATGGAAATA
AAATACCTCAGCATGTAACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
AAAGAAAATGAAAATAGCTCAGGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAATAGAACTTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCG
Found at i:134179279 original size:94 final size:92
Alignment explanation
Indices: 134179048--134179326 Score: 266
Period size: 94 Copynumber: 3.1 Consensus size: 92
134179038 GTTGATTTTT
* * * * * *
134179048 TTGAAAGATAGAAAATGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
** *
134179112 TGAGTTGA---TTTTTTTGAAACTTAAC
65 TGAGTTGATTTTTTTTTTGAAACAGAAA
** ** *** *
134179137 TTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATA
1 TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATA
134179201 TGAGTTGATTTTTTTTTTGAAAAGCAGAAA
65 TGAGTTGATTTTTTTTTTG-AAA-CAGAAA
* * * *
134179231 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
134179296 GAGTTGA-TTTTTTTGT-CAACAGAAA
66 GAGTTGATTTTTTTTTTGAAACAGAAA
134179321 TTGAAA
1 TTGAAA
134179327 TTACCTCAGC
Statistics
Matches: 151, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
87 1 0.01
89 55 0.36
90 12 0.08
91 2 0.01
92 8 0.05
93 11 0.07
94 60 0.40
95 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (92 bp):
TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTTTTGAAACAGAAA
Found at i:134179426 original size:75 final size:75
Alignment explanation
Indices: 134179231--134179440 Score: 278
Period size: 75 Copynumber: 2.8 Consensus size: 75
134179221 AAAGCAGAAA
** * *
134179231 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCACAATAC
134179296 GAGTTGATTTTT
64 GAGTTGATTTTT
** * * *
134179308 TTG-TCAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATACGA
134179372 GTTGATTTTT
66 GTTGATTTTT
* * **
134179382 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACA
134179441 GAAATTGAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
74 41 0.36
75 47 0.41
76 24 0.21
77 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATACGA
GTTGATTTTT
Found at i:134179446 original size:49 final size:49
Alignment explanation
Indices: 134179389--134179486 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
134179379 TTTTTGAAAA
* *
134179389 ACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
1 ACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACTCATTTCTC
* *
134179438 ACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTC
1 ACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACTCATTTCTC
134179487 GCAATATGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (49 bp):
ACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACTCATTTCTC
Found at i:134179557 original size:72 final size:72
Alignment explanation
Indices: 134179440--134179671 Score: 277
Period size: 72 Copynumber: 3.1 Consensus size: 72
134179430 CATTTCTCAC
*
134179440 AGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
134179505 TGAAAAT
66 TGAAAAT
134179512 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA---
134179577 TTTTTTGAAAGAT
63 --TTTTGAAA-AT
* * **** ** *
134179590 AGAAATTGAAAATACCTCAGCATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAGCTG-AT
1 AGAAATTGAAATTACCTCA--ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT
134179654 TTTGAAAAAGT
64 TTTG-AAAA-T
134179665 AGAAATT
1 AGAAATT
134179672 AAAAGGTTCA
Statistics
Matches: 140, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
72 61 0.44
74 6 0.04
75 11 0.08
77 8 0.06
78 20 0.14
79 1 0.01
80 33 0.24
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (72 bp):
AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAAT
Found at i:134179573 original size:124 final size:123
Alignment explanation
Indices: 134179314--134179558 Score: 377
Period size: 124 Copynumber: 2.0 Consensus size: 123
134179304 TTTTTTGTCA
* *
134179314 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
* *
134179379 TTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
65 ATTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTC
* **
134179438 ACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-A
1 ACAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATA
* * *
134179502 TTTTG-AAAATAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
66 TTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTC
134179559 GCAATATGAG
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
121 48 0.43
122 5 0.05
124 58 0.52
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (123 bp):
ACAGAAATTGAAATTACCTCAACGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATA
TTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTC
Found at i:134179725 original size:54 final size:55
Alignment explanation
Indices: 134179625--134179730 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
134179615 GAAACGAGGC
* *
134179625 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
** * *
134179679 TCAACCCACCTCTCGCAATATGATTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
134179731 CAAAAATCGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:134179777 original size:140 final size:140
Alignment explanation
Indices: 134179592--134179928 Score: 577
Period size: 140 Copynumber: 2.4 Consensus size: 140
134179582 TGAAAGATAG
*
134179592 AAATTGAAAATACCTCAGCATGTGAAAC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
*
134179656 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGATTTGATTCTTGAACAACAT
63 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACAT
134179721 AAATTGAAAACAA
128 AAATTGAAAACAA
* *
134179734 AAATCGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGA
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
* *
134179799 AAAAGTAGAAATTAAAAGGTTCAACCTACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAA
66 AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
*
134179864 TTGAAAACAG
131 TTGAAAACAA
134179874 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
134179929 TTGAAATTAA
Statistics
Matches: 185, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
139 2 0.01
140 165 0.89
142 18 0.10
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (140 bp):
AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGA
AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACATAAA
TTGAAAACAA
Found at i:134180018 original size:72 final size:71
Alignment explanation
Indices: 134179861--134180026 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
134179851 TGAACAACGT
* * * *
134179861 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
134179926 GAGTTG
66 GAGTTG
* *
134179932 AAATTAAGACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAA-AAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
134179997 TGAGTTG
65 TGAGTTG
**
134180004 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
134180027 GGCTTAATTC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
71 10 0.12
72 72 0.86
73 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:134180121 original size:122 final size:124
Alignment explanation
Indices: 134179901--134180147 Score: 365
Period size: 122 Copynumber: 2.0 Consensus size: 124
134179891 GCGTGACCTG
* * * *
134179901 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAGACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAGACACAAAAACTAAAAATACATCAGCG
134179966 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
134180026 AGGCTTAATTCACCTCTCGCAATATGAG-TCAATTTAA-A-ACATAAACTAAAAATACATCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAGACACAAAAACTAAAAATACATCAGCG
* * *
134180088 TGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
134180147 A
1 A
134180148 ATACCTCAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
121 16 0.14
122 61 0.55
123 1 0.01
124 7 0.06
125 26 0.23
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAAATTAAGACACAAAAACTAAAAATACATCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:134180161 original size:71 final size:70
Alignment explanation
Indices: 134180026--134180200 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
134180016 AAAAATTAAA
* * * * *
134180026 AGGCTTAATTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACATCAGCGTG
1 AGGCTTAATTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACATCAACGTG
134180090 TCCCG
66 TCCCG
* * * *
134180095 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTTAATTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACATCAACGT
**
134180160 GTCTTG
65 GTCCCG
134180166 AGGCTTAATTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTTAATTCACT-TCTCGCAATATGAGTTGATTT
134180201 CCCTTGAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 25 0.28
70 6 0.07
71 59 0.66
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (70 bp):
AGGCTTAATTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACATCAACGTG
TCCCG
Found at i:134188500 original size:12 final size:12
Alignment explanation
Indices: 134188480--134188515 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
134188470 TGGGATATGC
*
134188480 AATGTATGAATG
1 AATGCATGAATG
134188492 AATGCATGAATG
1 AATGCATGAATG
134188504 AATGCATGAATG
1 AATGCATGAATG
134188516 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:134190525 original size:33 final size:33
Alignment explanation
Indices: 134190463--134190525 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
134190453 ACACAATATG
* * *
134190463 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAGTAAATATAATA
134190496 GTATTTAAGAATATATACATAAG-AAATATA
1 GTATTTAA-AATATATACATAAGTAAATATA
134190526 TAACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAGTAAATATAATA
Found at i:134191089 original size:17 final size:17
Alignment explanation
Indices: 134191067--134191106 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
134191057 GTTTTTCTTT
*
134191067 TTTTTTTTTAGGTTAGG
1 TTTTTTTTGAGGTTAGG
*
134191084 TTTTTTTTGGGGTTAGG
1 TTTTTTTTGAGGTTAGG
134191101 TTTTTT
1 TTTTTT
134191107 CTTTTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.07, C:0.00, G:0.25, T:0.68
Consensus pattern (17 bp):
TTTTTTTTGAGGTTAGG
Found at i:134191111 original size:22 final size:22
Alignment explanation
Indices: 134191050--134191152 Score: 104
Period size: 23 Copynumber: 4.7 Consensus size: 22
134191040 TAGGTGGCTA
134191050 GGGTTAGGTTTTTCTTTTTTTTT
1 GGGTTAGGTTTTT-TTTTTTTTT
* *** *
134191073 --TTTAGGTTAGGTTTTTTTTG
1 GGGTTAGGTTTTTTTTTTTTTT
134191093 GGGTTAGGTTTTTTCTTTTTTTT
1 GGGTTAGGTTTTTT-TTTTTTTT
134191116 GGGTTAGGGTTTTTTTTTTTTTT
1 GGGTTA-GGTTTTTTTTTTTTTT
*
134191139 -AGTTAGGTTTTTTT
1 GGGTTAGGTTTTTTT
134191153 GGGAGGGCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
20 8 0.12
21 16 0.25
22 12 0.18
23 21 0.32
24 8 0.12
ACGTcount: A:0.07, C:0.02, G:0.23, T:0.68
Consensus pattern (22 bp):
GGGTTAGGTTTTTTTTTTTTTT
Found at i:134196831 original size:35 final size:35
Alignment explanation
Indices: 134196804--134196969 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
134196794 CATGGCAAAG
*
134196804 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134196839 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134196874 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
134196914 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
134196949 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
134196970 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:134196923 original size:75 final size:75
Alignment explanation
Indices: 134196804--134196974 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
134196794 CATGGCAAAG
** *
134196804 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
134196863 CCATACTGAGC
65 CCATACCGAGC
134196874 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
134196939 CATACCGAGT
66 CATACCGAGC
**
134196949 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
134196975 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:134202737 original size:35 final size:35
Alignment explanation
Indices: 134202710--134202875 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
134202700 CATGGCAAAG
*
134202710 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134202745 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134202780 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
134202820 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
134202855 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
134202876 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:134202829 original size:75 final size:75
Alignment explanation
Indices: 134202710--134202880 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
134202700 CATGGCAAAG
** *
134202710 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
134202769 CCATACTGAGC
65 CCATACCGAGC
134202780 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
134202845 CATACCGAGT
66 CATACCGAGC
**
134202855 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
134202881 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:134206050 original size:46 final size:44
Alignment explanation
Indices: 134205946--134206053 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
134205936 TGTCTTTGAC
** * * *
134205946 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
134205990 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
134206036 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
134206054 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:134207210 original size:12 final size:12
Alignment explanation
Indices: 134207193--134207217 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
134207183 AATAATAAAA
134207193 TATTTTTTATTT
1 TATTTTTTATTT
134207205 TATTTTTTATTT
1 TATTTTTTATTT
134207217 T
1 T
134207218 TACCCTGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:134212817 original size:35 final size:35
Alignment explanation
Indices: 134212790--134212955 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
134212780 CATGGCAAAG
*
134212790 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134212825 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
134212860 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
134212900 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
134212935 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
134212956 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:134212909 original size:75 final size:75
Alignment explanation
Indices: 134212790--134212960 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
134212780 CATGGCAAAG
** *
134212790 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
134212849 CCATACTGAGC
65 CCATACCGAGC
134212860 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
134212925 CATACCGAGT
66 CATACCGAGC
**
134212935 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
134212961 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:134215089 original size:27 final size:27
Alignment explanation
Indices: 134215055--134215392 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
134215045 AAAGTACTCC
*
134215055 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
134215082 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
134215109 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
134215136 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
134215163 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
134215190 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
134215217 CAATTTACATAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
134215243 CGATTTACATAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
134215270 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
134215297 CAATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
134215324 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
134215351 TGATTTACAGAATTACTGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
*
134215377 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
134215393 TAAAATACCC
Statistics
Matches: 276, Mismatches: 30, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
26 39 0.14
27 235 0.85
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:134215436 original size:134 final size:132
Alignment explanation
Indices: 134215055--134215394 Score: 457
Period size: 134 Copynumber: 2.5 Consensus size: 132
134215045 AAAGTACTCC
** * **
134215055 CGATTTATAGAATTACCGTTTTACCCTCAGGTTATAGAATTACCGTTTTACCCTCGATTTGTAAA
1 CGATTTATAGAATTACCGTTTTACCCT-AATTTACAGAATTACCGTTTTACCC-CGATTTACAAA
** * *
134215120 ATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTT
64 ATTACTATTTTACCCTCGATTT-TAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTT
134215185 ACCCT
128 ACCCT
* * * *
134215190 CGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTACCGTTTTACCCCGATTTACATAA
1 CGATTTATAGAATTACCGTTTTA-CCCTAATTTACAGAATTACCGTTTTACCCCGATTTACAAAA
*
134215255 TTA-TCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTT
65 TTACT-ATTTTACCCTCGATTT-TAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTT
134215319 ACCCT
128 ACCCT
* * *
134215324 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCCGATTTACAAAA
1 CGATTTATAGAATTACCGTTTTACCC-TAATTTACAGAATTACCGTTTTACCCCGATTTACAAAA
134215389 TTACTA
65 TTACTA
134215395 AAATACCCTT
Statistics
Matches: 180, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
133 3 0.02
134 130 0.72
135 44 0.24
136 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (132 bp):
CGATTTATAGAATTACCGTTTTACCCTAATTTACAGAATTACCGTTTTACCCCGATTTACAAAAT
TACTATTTTACCCTCGATTTTAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTACC
CT
Found at i:134215448 original size:134 final size:134
Alignment explanation
Indices: 134215055--134215448 Score: 369
Period size: 134 Copynumber: 2.9 Consensus size: 134
134215045 AAAGTACTCC
* * ** * **
134215055 CGATTTATAGAATTACCGTTTTACCCTCAGGTTATAGAATTACCGTTTTACCCTCGATTTGTAAA
1 CGATTTACAGAATTACCGTTTTACCCCCAATTTACAGAATTACCGTTTTACCC-CGATTTACAAA
* **** * *** * * * *
134215120 ATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTT
65 ATTATCAAAATACCCTCGATTTACAGAATTACCGCAATACCCTCAATTTACAAAACTACCATTTT
134215185 ACCCT
130 ACCCT
* *
134215190 CGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTACCGTTTTACCCCGATTTACATAA
1 CGATTTACAGAATTACCGTTTTACCCCCAATTTACAGAATTACCGTTTTACCCCGATTTACAAAA
*** *** * *
134215255 TTATCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCATTTTA
66 TTATCAAAATACCCTCGATTTACAGAATTACCGCAATACCCTCAATTTACAAAACTACCATTTTA
134215320 CCCT
131 CCCT
* * *** *
134215324 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCCGATTTACAAAA
1 CGATTTACAGAATTACCGTTTTACCCCCAATTTACAGAATTACCGTTTTACCCCGATTTACAAAA
* * ** **
134215389 TTA-CTAAAATACCCTTGGTTT-GTGAAATTACCGCAATACCCTCAATTTGTAAAACTACCA
66 TTATC-AAAATACCCTCGATTTACAG-AATTACCGCAATACCCTCAATTTACAAAACTACCA
134215449 AAATACCCCT
Statistics
Matches: 221, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
133 2 0.01
134 172 0.78
135 47 0.21
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (134 bp):
CGATTTACAGAATTACCGTTTTACCCCCAATTTACAGAATTACCGTTTTACCCCGATTTACAAAA
TTATCAAAATACCCTCGATTTACAGAATTACCGCAATACCCTCAATTTACAAAACTACCATTTTA
CCCT
Found at i:134216658 original size:25 final size:25
Alignment explanation
Indices: 134216628--134216676 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
134216618 CTTATACCAT
* * *
134216628 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
134216653 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
134216677 TTATGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:134216743 original size:20 final size:20
Alignment explanation
Indices: 134216718--134216796 Score: 131
Period size: 20 Copynumber: 4.0 Consensus size: 20
134216708 TAAATATGGT
*
134216718 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
134216738 ATGTATGATATACACATGAC
1 ATGTATGATATGCACATGAC
*
134216758 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
134216778 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
134216797 TGTAATCATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:134216874 original size:24 final size:24
Alignment explanation
Indices: 134216847--134216988 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
134216837 GAGGAAGTGA
134216847 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
134216871 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
134216895 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
134216918 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
134216942 GAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
134216965 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
134216989 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 40 0.37
24 61 0.56
25 8 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:134216985 original size:71 final size:71
Alignment explanation
Indices: 134216847--134216989 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 71
134216837 GAGGAAGTGA
*
134216847 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
134216912 AGTTAT
66 AGTTAT
** * *
134216918 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTT-TTCCCCAGTTATTAAAAGAGGC-TAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTAGGCC-
134216981 CCAGTTAT
64 CCAGTTAT
134216989 A
1 A
134216990 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 21 0.32
71 44 0.68
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
AGTTAT
Found at i:134217215 original size:31 final size:31
Alignment explanation
Indices: 134217180--134217243 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
134217170 CGTTTACAGT
134217180 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
134217211 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
134217242 AA
1 AA
134217244 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:134220054 original size:27 final size:27
Alignment explanation
Indices: 134220022--134220357 Score: 428
Period size: 27 Copynumber: 12.5 Consensus size: 27
134220012 AGTACTCCCA
*
134220022 ATTTATAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
134220048 AGGTTATAGAATTACCGTTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
** *
134220076 ATTTGTAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
134220103 ATTTACAGAATTACCGTTTTACCCTC-
1 ATTTACAGAATTACCGTTTTACCCTCG
**
134220129 AGTTTACAGAATTACTATTTTACCCTCG
1 A-TTTACAGAATTACCGTTTTACCCTCG
* * *
134220157 ATTTACAGAATTATCGTTTTACCCCCA
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
134220184 ATTTACATAATTACCGTTTTACCCCCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
134220211 ATTTACATAATTATCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
134220238 ATTTACA-AATTACCGTTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
134220264 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTACAGAATTACCGTTTTACCCTCG
* * *
134220291 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACCGTTTTACCCTCG
* *
134220318 ATTTATAGAATTACTGTTTTACCC-CG
1 ATTTACAGAATTACCGTTTTACCCTCG
*
134220344 ATTTACAAAATTAC
1 ATTTACAGAATTAC
134220358 TAAAATACCT
Statistics
Matches: 277, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
26 40 0.14
27 235 0.85
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
ATTTACAGAATTACCGTTTTACCCTCG
Done.