Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 437 of 770
Found at i:134760103 original size:49 final size:49
Alignment explanation
Indices: 134760048--134760204 Score: 215
Period size: 49 Copynumber: 3.4 Consensus size: 49
134760038 TTTTACATTA
134760048 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
134760097 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
134760137 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
134760186 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
134760205 CACATATGTA
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 52 0.55
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:134763616 original size:29 final size:29
Alignment explanation
Indices: 134763580--134763742 Score: 283
Period size: 29 Copynumber: 5.7 Consensus size: 29
134763570 TGTTGAAAAA
*
134763580 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134763609 CTCGCACACGTAGTGCCTC-ATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134763637 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
134763666 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134763695 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
134763724 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
134763743 TATTCATTCG
Statistics
Matches: 128, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
28 27 0.21
29 101 0.79
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:134763671 original size:86 final size:87
Alignment explanation
Indices: 134763580--134763742 Score: 301
Period size: 86 Copynumber: 1.9 Consensus size: 87
134763570 TGTTGAAAAA
*
134763580 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACGTAGTGCCTC-ATTACTGATCTCGCAC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
134763644 ACATAGTGCCTCGATTACTGAT
66 ACATAGTGCCTCGATTACTGAT
*
134763666 CTCGCACACATAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
1 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
134763731 ACATAGTGCCTC
66 ACATAGTGCCTC
134763743 TATTCATTCG
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
86 46 0.62
87 28 0.38
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (87 bp):
CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
ACATAGTGCCTCGATTACTGAT
Found at i:134763998 original size:38 final size:40
Alignment explanation
Indices: 134763916--134764155 Score: 337
Period size: 40 Copynumber: 6.1 Consensus size: 40
134763906 CGAATACACG
* * * * *
134763916 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
134763956 TCACTAGCACGAATGCTCTTCGG-ACTTTG-CCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
134763994 TCACTAGCACGAATGCTCTTCGGGACTT--TCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
134764032 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
134764072 TCACTAGCATGAATGCTC-TCGGAACTTAGTCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
134764111 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
134764151 TCACT
1 TCACT
134764156 CTCAATTCTC
Statistics
Matches: 188, Mismatches: 7, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
38 68 0.36
39 47 0.25
40 73 0.39
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
Found at i:134764131 original size:79 final size:80
Alignment explanation
Indices: 134763916--134764155 Score: 364
Period size: 79 Copynumber: 3.1 Consensus size: 80
134763906 CGAATACACG
* * *
134763916 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-A
1 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* *
134763980 CTTTG-CCGGATACA
66 CTTAGTCCGGATATA
*
134763994 TCACTAGCACGAATGCTCTTCGGGACTT--TCCGGATACATCACTAGCACGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
134764057 CTTAGTCCGGATATA
66 CTTAGTCCGGATATA
* * *
134764072 TCACTAGCATGAATGCTC-TCGGAACTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
134764136 CTTAGTCCGGATATA
66 CTTAGTCCGGATATA
134764151 TCACT
1 TCACT
134764156 CTCAATTCTC
Statistics
Matches: 148, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
76 32 0.22
77 13 0.09
78 50 0.34
79 53 0.36
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGTCCGGATATA
Found at i:134766026 original size:37 final size:37
Alignment explanation
Indices: 134765973--134766063 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
134765963 TATAAAAGAA
134765973 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
134766010 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
134766047 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
134766064 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:134766197 original size:40 final size:41
Alignment explanation
Indices: 134766153--134766288 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 41
134766143 CATATATTTT
134766153 ACATT-AGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
* * *
134766193 ACATTCA-CCACATCGGCCATTAGGC-C-T-TACATACACTTTC
1 ACATTCAGCCA-TTAGGCC-TTA-TCACATATACATACACTTTC
134766233 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATT-----CA---GCCATTAGGCCTTATCACATATACATACACTTTC
134766282 ACATTCA
1 ACATTCA
134766289 TCGCATTGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 28
0.69 0.06 0.26
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 4 0.05
43 1 0.01
44 2 0.03
45 2 0.03
46 1 0.01
47 4 0.05
48 6 0.08
49 21 0.28
ACGTcount: A:0.31, C:0.32, G:0.08, T:0.29
Consensus pattern (41 bp):
ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
Found at i:134766214 original size:49 final size:49
Alignment explanation
Indices: 134766159--134766315 Score: 215
Period size: 49 Copynumber: 3.4 Consensus size: 49
134766149 TTTTACATTA
134766159 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
134766208 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
134766248 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
134766297 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
134766316 CACATATGTA
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 52 0.55
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:134769727 original size:29 final size:29
Alignment explanation
Indices: 134769691--134769854 Score: 292
Period size: 29 Copynumber: 5.7 Consensus size: 29
134769681 TGTTGAAAAA
*
134769691 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134769720 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134769749 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
134769778 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
134769807 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
134769836 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
134769855 TATTCATTCG
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 129 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:134770085 original size:40 final size:40
Alignment explanation
Indices: 134770028--134770272 Score: 355
Period size: 40 Copynumber: 6.1 Consensus size: 40
134770018 CGAATACACG
* * *
134770028 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
134770068 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
134770108 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
134770148 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
134770188 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
134770228 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
134770268 TCACT
1 TCACT
134770273 CTCAATTCTC
Statistics
Matches: 196, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 196 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:134772145 original size:37 final size:37
Alignment explanation
Indices: 134772092--134772182 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
134772082 TATAAAAGAA
134772092 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
134772129 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
134772166 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
134772183 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:134772316 original size:40 final size:41
Alignment explanation
Indices: 134772272--134772407 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 41
134772262 CATATATTTT
134772272 ACATT-AGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
* * *
134772312 ACATTCA-CCACATCGGCCATTAGGC-C-T-TACATACACTTTC
1 ACATTCAGCCA-TTAGGCC-TTA-TCACATATACATACACTTTC
134772352 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATT-----CA---GCCATTAGGCCTTATCACATATACATACACTTTC
134772401 ACATTCA
1 ACATTCA
134772408 TCGCATTGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 28
0.69 0.06 0.26
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 4 0.05
43 1 0.01
44 2 0.03
45 2 0.03
46 1 0.01
47 4 0.05
48 6 0.08
49 21 0.28
ACGTcount: A:0.31, C:0.32, G:0.08, T:0.29
Consensus pattern (41 bp):
ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
Found at i:134772333 original size:49 final size:49
Alignment explanation
Indices: 134772278--134772434 Score: 215
Period size: 49 Copynumber: 3.4 Consensus size: 49
134772268 TTTTACATTA
134772278 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
134772327 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
134772367 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
134772416 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
134772435 CACATATGTA
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 52 0.55
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:134776031 original size:21 final size:21
Alignment explanation
Indices: 134776005--134776045 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
134775995 ATTTAGATTT
134776005 AAAATTAATTTATAATTTTAA
1 AAAATTAATTTATAATTTTAA
* *
134776026 AAAATTATTTTATTATTTTA
1 AAAATTAATTTATAATTTTA
134776046 TTTTAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAAATTAATTTATAATTTTAA
Found at i:134776342 original size:21 final size:22
Alignment explanation
Indices: 134776312--134776352 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
134776302 ATTTATATAC
134776312 TATTTGTTTAAAACTTAAAAAT
1 TATTTGTTTAAAACTTAAAAAT
*
134776334 TATTT-TTTAAAATTTAAAA
1 TATTTGTTTAAAACTTAAAA
134776353 TTGTTTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TATTTGTTTAAAACTTAAAAAT
Found at i:134782735 original size:25 final size:26
Alignment explanation
Indices: 134782707--134782760 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
134782697 TCATAAATAT
134782707 TATCAT-AAGAATAAATA-TATTTAAC
1 TATCATAAAG-ATAAATATTATTTAAC
*
134782732 TATCATAAAGATAAATATTATTTATC
1 TATCATAAAGATAAATATTATTTAAC
134782758 TAT
1 TAT
134782761 ATATTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (26 bp):
TATCATAAAGATAAATATTATTTAAC
Found at i:134786347 original size:28 final size:28
Alignment explanation
Indices: 134786284--134786383 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
134786274 ATAGTGAGTC
*
134786284 CGCACAGTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
134786311 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
134786339 CGCACACTTAGTGCTATACAAATTTTAAACC
1 CGCACACTTAGTGCTATA-TAA--TCAAACT
134786370 CGCACACTTAGTGC
1 CGCACACTTAGTGC
134786384 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 21 0.33
28 21 0.33
29 2 0.03
31 19 0.30
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:134791922 original size:66 final size:66
Alignment explanation
Indices: 134791824--134791957 Score: 182
Period size: 66 Copynumber: 2.0 Consensus size: 66
134791814 ACAAATTACT
* * * *
134791824 CAACTTAAAGCGAAGGCAGCATCGAGAGAAGCAGAGGC-TCAAAGCAAATATGATGAACTCCAGC
1 CAACTTAAAGCGAAGGCAGCAACGAGAGAAGCAGAGGCAAC-AAGAAAATATGAAGAACTCCAGC
134791888 TA
65 TA
* *
134791890 CAACTTAAAGTGAAGGCAGCAACGAG-GAAAGCAGAGGCAACAAGAAAATATGAAGAACTCTAGC
1 CAACTTAAAGCGAAGGCAGCAACGAGAG-AAGCAGAGGCAACAAGAAAATATGAAGAACTCCAGC
134791954 TA
65 TA
134791956 CA
1 CA
134791958 GCTTCAAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
65 1 0.02
66 58 0.97
67 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (66 bp):
CAACTTAAAGCGAAGGCAGCAACGAGAGAAGCAGAGGCAACAAGAAAATATGAAGAACTCCAGCT
A
Found at i:134792328 original size:43 final size:43
Alignment explanation
Indices: 134792243--134792356 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
134792233 GTTTTCCAAC
* * * *
134792243 AAACGCCGCTAAATAACATCACCTTTAGTGCCACTTCTCATAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGCCACTTCCCATAA
* * * *
134792286 AAATGCCGTTGAAA-AACATGACCTTTAGCGGCGCTTCCCATAA
1 AAACGCCGCT-AAAGAACATGACCTTTAGCGCCACTTCCCATAA
134792329 AAACGCCGCTAAAGAACATGACCTTTAG
1 AAACGCCGCTAAAGAACATGACCTTTAG
134792357 TGGTGCTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 3 0.05
43 54 0.90
44 3 0.05
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGCCACTTCCCATAA
Found at i:134792373 original size:43 final size:42
Alignment explanation
Indices: 134792243--134792375 Score: 133
Period size: 43 Copynumber: 3.1 Consensus size: 42
134792233 GTTTTCCAAC
* * * *
134792243 AAACGCCGCTAAATAACATCACCTTTAGTGCCACTTCTCATAA
1 AAACGCCGCTAAA-AACATGACCTTTAGTGGCGCTTTTCATAA
* * * **
134792286 AAATGCCGTTGAAAAACATGACCTTTAGCGGCGCTTCCCATAA
1 AAACGCCGCT-AAAAACATGACCTTTAGTGGCGCTTTTCATAA
*
134792329 AAACGCCGCTAAAGAACATGACCTTTAGTGGTGCTTTT-ACTAA
1 AAACGCCGCTAAA-AACATGACCTTTAGTGGCGCTTTTCA-TAA
134792372 AAAC
1 AAAC
134792376 ACAACTAAAG
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
42 4 0.05
43 67 0.91
44 3 0.04
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
AAACGCCGCTAAAAACATGACCTTTAGTGGCGCTTTTCATAA
Found at i:134792469 original size:43 final size:43
Alignment explanation
Indices: 134792420--134792522 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
134792410 GGGAAAAACG
** * *
134792420 CCGCTAAAGGTCATGTTCTTTAGCAATGTTTTTATGGGAAGTA
1 CCGCTAAAGGTCATGTTCTTTAGCAACATTTTTATGAGAAGCA
* ** *
134792463 CTGCTAAAGGTCATGTTCTTTAGCGGCATTTTTATGAGAAGCG
1 CCGCTAAAGGTCATGTTCTTTAGCAACATTTTTATGAGAAGCA
134792506 CCGCTAAAGGTCATGTT
1 CCGCTAAAGGTCATGTT
134792523 TTATAGTGGC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (43 bp):
CCGCTAAAGGTCATGTTCTTTAGCAACATTTTTATGAGAAGCA
Found at i:134795051 original size:29 final size:29
Alignment explanation
Indices: 134795023--134795124 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
134795013 CCTCCGAGCT
** * * *
134795023 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
134795052 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
134795081 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
134795110 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
134795125 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:134802908 original size:29 final size:29
Alignment explanation
Indices: 134802880--134802983 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
134802870 CCTCCGAGCT
** * * *
134802880 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
134802909 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
134802938 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
134802967 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
134802984 CTCGTCACCG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:134807628 original size:51 final size:51
Alignment explanation
Indices: 134807555--134807658 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
134807545 GGAAAATATG
*
134807555 ATAGTGGTAATGGGTTTATATAGTAGTAGATTGGGGAAAATGTTTAGCAAA
1 ATAGTGGTAATGGGTTTATATAGTAGTAGATTAGGGAAAATGTTTAGCAAA
134807606 ATAGTGGTAATGGGTTTATATAGTAGTAGATTAGGGAAAATGTTTAGCAAA
1 ATAGTGGTAATGGGTTTATATAGTAGTAGATTAGGGAAAATGTTTAGCAAA
134807657 AT
1 AT
134807659 TTGAGCTAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.34
Consensus pattern (51 bp):
ATAGTGGTAATGGGTTTATATAGTAGTAGATTAGGGAAAATGTTTAGCAAA
Found at i:134812374 original size:25 final size:25
Alignment explanation
Indices: 134812346--134812424 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
134812336 ACTCGGCCCT
134812346 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
134812371 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
134812393 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
134812418 ATCACAT
1 ATCACAT
134812425 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:134812470 original size:49 final size:49
Alignment explanation
Indices: 134812296--134812694 Score: 666
Period size: 49 Copynumber: 8.3 Consensus size: 49
134812286 CCCTTCGGGA
* * * * *
134812296 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
134812343 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134812390 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
134812437 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134812486 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134812535 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
134812584 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134812633 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
134812682 CTTATCACATATA
1 CTTATCACATATA
134812695 CTATCATGTA
Statistics
Matches: 337, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 92 0.27
49 244 0.72
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:134816772 original size:40 final size:40
Alignment explanation
Indices: 134816740--134817086 Score: 499
Period size: 40 Copynumber: 8.8 Consensus size: 40
134816730 CCAGCATGAT
* * * *
134816740 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
134816780 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
134816819 TGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
134816859 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
134816899 TGCTCTTCAGGAC-TAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
134816937 TGCTCTTCGGGACTTAGCCCGGATACATC-CTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
134816976 TGCTCTTCGAGGACTTATCCCGGACACATCACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
*
134817017 TGCTCTTC-GAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
134817056 TGCTCTTCTGGACTTAG-CCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
134817087 CTCAATTCTC
Statistics
Matches: 277, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
38 34 0.12
39 108 0.39
40 117 0.42
41 18 0.06
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:134816953 original size:118 final size:116
Alignment explanation
Indices: 134816740--134817086 Score: 489
Period size: 118 Copynumber: 2.9 Consensus size: 116
134816730 CCAGCATGAT
* * * * * ** *
134816740 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGTTTAGCACGGATAT
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTAGC-CGGATAC
* *
134816805 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCAGATACATCACTAGCACGAA
64 ATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
134816859 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGGACTAGCCGGATACA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTAGCCGGATACA
134816924 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATC-CTAGCACGAA
65 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
* * *
134816976 TGCTCTTCGAGGACTTATCCCGGACACATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATA
1 TGCTCTTCGA-GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAC-TAG-CCGGATA
*
134817041 CATCACTAGCACGAATGCTCTTCTGGACTTAGCCGGATACATCACT
63 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACATCACT
134817087 CTCAATTCTC
Statistics
Matches: 208, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
117 23 0.11
118 96 0.46
119 89 0.43
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (116 bp):
TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTAGCCGGATACAT
CACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAA
Found at i:134819753 original size:27 final size:29
Alignment explanation
Indices: 134819686--134819757 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
134819676 TGACGAGATT
134819686 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
134819715 GCACTAAGTGTGCGTGCTGGAAATATATG
1 GCACTAAGTGTGCGTGCTGGAAATATATG
*
134819744 GCACTATGTGTGCG
1 GCACTAAGTGTGCG
134819758 ATTTACTATG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGTGCTGGAAATATATG
Found at i:134819767 original size:24 final size:24
Alignment explanation
Indices: 134819740--134819830 Score: 182
Period size: 24 Copynumber: 3.8 Consensus size: 24
134819730 GCTGGAAATA
134819740 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134819764 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134819788 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134819812 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
134819831 ACATAATAAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:134819844 original size:48 final size:48
Alignment explanation
Indices: 134819739--134819852 Score: 167
Period size: 48 Copynumber: 2.4 Consensus size: 48
134819729 TGCTGGAAAT
* **
134819739 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATA
* *
134819787 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATA
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATA
134819836 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
134819853 CACATTCGGT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 55 0.92
49 5 0.08
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (48 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATA
Found at i:134827572 original size:29 final size:29
Alignment explanation
Indices: 134827539--134827612 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
134827529 GTGACGAGAT
134827539 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
134827568 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
134827597 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
134827613 ATTTACTATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:134827622 original size:24 final size:24
Alignment explanation
Indices: 134827595--134827683 Score: 178
Period size: 24 Copynumber: 3.7 Consensus size: 24
134827585 GCTGGAAATA
134827595 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134827619 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134827643 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
134827667 TATGGCACTATGTGTGC
1 TATGGCACTATGTGTGC
134827684 CACATTCGAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:134830060 original size:41 final size:41
Alignment explanation
Indices: 134830015--134830097 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
134830005 CATACCACAT
134830015 ATGTATAATTTCCTCTTTGAGTCTAGTTTCTATAGAAACAA
1 ATGTATAATTTCCTCTTTGAGTCTAGTTTCTATAGAAACAA
134830056 ATGTATAATTTCCTCTTTGAGTCTAGTTTCTATAGAAACAA
1 ATGTATAATTTCCTCTTTGAGTCTAGTTTCTATAGAAACAA
134830097 A
1 A
134830098 CGGCATCAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (41 bp):
ATGTATAATTTCCTCTTTGAGTCTAGTTTCTATAGAAACAA
Found at i:134831726 original size:18 final size:19
Alignment explanation
Indices: 134831693--134831731 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
134831683 TGAGGTGCGC
*
134831693 AAGGGTGAGAAGAGGGGAG
1 AAGGGAGAGAAGAGGGGAG
134831712 AAGGGAGAG-AGAGGGGAG
1 AAGGGAGAGAAGAGGGGAG
134831730 AA
1 AA
134831732 AAATGAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.56, T:0.03
Consensus pattern (19 bp):
AAGGGAGAGAAGAGGGGAG
Found at i:134839361 original size:28 final size:28
Alignment explanation
Indices: 134839326--134839385 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
134839316 CCATGAGCCA
134839326 TATCATAAGATTATATACACAAAATGAG
1 TATCATAAGATTATATACACAAAATGAG
134839354 TATCATAAGATTATATACACAAAATGAG
1 TATCATAAGATTATATACACAAAATGAG
134839382 TATC
1 TATC
134839386 CCAAAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (28 bp):
TATCATAAGATTATATACACAAAATGAG
Found at i:134842033 original size:35 final size:36
Alignment explanation
Indices: 134841987--134842062 Score: 127
Period size: 35 Copynumber: 2.1 Consensus size: 36
134841977 CAAAATCGCG
134841987 AGGTAAACCTCAGATCTCTATCT-AATGATCGACAA
1 AGGTAAACCTCAGATCTCTATCTAAATGATCGACAA
*
134842022 AGGTAAACCTCAGATCTCTATCTGAAATGATTGACAA
1 AGGTAAACCTCAGATCTCTATCT-AAATGATCGACAA
134842059 AGGT
1 AGGT
134842063 GCTCTGTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
35 23 0.61
37 15 0.39
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (36 bp):
AGGTAAACCTCAGATCTCTATCTAAATGATCGACAA
Found at i:134846230 original size:40 final size:40
Alignment explanation
Indices: 134846186--134846364 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
134846176 GCTCGATTTT
* * * *
134846186 CTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
134846226 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
134846266 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGT
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
134846306 CTTCGGGACTTAACCCAGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
134846347 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
134846365 ATACCATTCG
Statistics
Matches: 119, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
40 94 0.79
41 25 0.21
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:134849420 original size:24 final size:24
Alignment explanation
Indices: 134849370--134849514 Score: 193
Period size: 24 Copynumber: 6.0 Consensus size: 24
134849360 GCTTTATCAT
* *
134849370 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * *
134849395 ATAACTGGGGCAAAAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
134849419 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
134849443 ATAACTAGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
134849467 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
134849491 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
134849515 CACTTCCTCC
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 97 0.90
25 11 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:134849577 original size:11 final size:11
Alignment explanation
Indices: 134849563--134849618 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
134849553 TTATGTATAC
134849563 ATCATGTGCAT
1 ATCATGTGCAT
*
134849574 ATCA--TACAT
1 ATCATGTGCAT
134849583 ATCATGTGCAT
1 ATCATGTGCAT
*
134849594 ATCA--TACAT
1 ATCATGTGCAT
*
134849603 GTCATGTGCAT
1 ATCATGTGCAT
134849614 ATCAT
1 ATCAT
134849619 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:134849588 original size:20 final size:20
Alignment explanation
Indices: 134849563--134849629 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
134849553 TTATGTATAC
134849563 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
134849583 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
134849603 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
134849623 ACCATGT
1 ATCATGT
134849630 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:134853805 original size:39 final size:40
Alignment explanation
Indices: 134853696--134853939 Score: 259
Period size: 40 Copynumber: 6.2 Consensus size: 40
134853686 CGGAATACAA
*
134853696 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGC
* * * * *
134853736 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
*
134853776 CCGGATTTAACAACT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
*
134853815 CCGGAT-TAACAACTCGCACGAATGCCTT-GGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
134853853 CC-GATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTAGCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
134853892 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
134853932 CCGGATAT
1 CCGGATAT
134853940 CATTCAATTG
Statistics
Matches: 175, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
37 5 0.03
38 35 0.20
39 53 0.30
40 80 0.46
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:134861785 original size:40 final size:39
Alignment explanation
Indices: 134861740--134861983 Score: 262
Period size: 40 Copynumber: 6.2 Consensus size: 39
134861730 CGGAATACAA
*
134861740 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
134861780 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-TGCACGAATGCCTTCGGGTCTTAGC
*
134861820 CCGGATTTAACAACT-CACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGC
*
134861857 CCGGATTTAACAACTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGC
* * *
134861896 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACT-GCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
134861936 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACT-GCACGAATGCCTTCGGGTCTTAGC
134861976 CCGGATAT
1 CCGGATAT
134861984 CATTCAATTG
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
37 23 0.13
38 25 0.14
39 23 0.13
40 104 0.59
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:134870030 original size:40 final size:40
Alignment explanation
Indices: 134869970--134870137 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
134869960 CGGGATTTAA
* ** *
134869970 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
134870010 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
134870050 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
134870090 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
134870130 CCGGATAT
1 CCGGATAT
134870138 CATTCAAATG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:134870117 original size:80 final size:80
Alignment explanation
Indices: 134869956--134870137 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
134869946 AATTCACGTA
* * * * **
134869956 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
134870020 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
134870035 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
134870099 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
134870115 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
134870138 CATTCAAATG
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 11 0.13
80 73 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:134877981 original size:20 final size:20
Alignment explanation
Indices: 134877921--134877981 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
134877911 ATAAATATGG
*
134877921 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
* *
134877941 CATGTATGATAGGCACATGA
1 TATGTATGATATGCACATGA
134877961 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
134877981 T
1 T
134877982 GTAATCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:134878059 original size:24 final size:24
Alignment explanation
Indices: 134878032--134878174 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
134878022 GAGGAAGTGA
134878032 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
134878056 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
134878080 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
134878103 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
134878127 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
134878151 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
134878175 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:134878125 original size:47 final size:47
Alignment explanation
Indices: 134878032--134878174 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
134878022 GAGGAAGTGA
134878032 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
134878080 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
134878127 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
134878175 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:134878148 original size:71 final size:72
Alignment explanation
Indices: 134878032--134878175 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
134878022 GAGGAAGTGA
*
134878032 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
134878095 CCAGTTAT
65 CCAGTTAT
** * *
134878103 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
134878168 CAGTTAT
66 CAGTTAT
134878175 A
1 A
134878176 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:134878421 original size:29 final size:30
Alignment explanation
Indices: 134878365--134878426 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
134878355 CGTTTACAGT
134878365 AAAGGCTTCGGCCCAGTAATATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
** *
134878395 AAAGGCTTCGG-CCAGTGTTATGGAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
134878424 AAA
1 AAA
134878427 TGATTTATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:134881356 original size:20 final size:20
Alignment explanation
Indices: 134881333--134881370 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
134881323 CACATCCAAA
*
134881333 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
134881353 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
134881371 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:134889228 original size:20 final size:20
Alignment explanation
Indices: 134889205--134889242 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
134889195 CACATCCAAA
*
134889205 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
134889225 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
134889243 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:134894315 original size:44 final size:44
Alignment explanation
Indices: 134894250--134894335 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
134894240 TTAATATCTC
* *
134894250 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
134894294 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACG
134894336 ATTAAGGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:134894534 original size:47 final size:47
Alignment explanation
Indices: 134894473--134894594 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
134894463 GCATTGGCAC
134894473 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
134894520 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
134894567 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
134894595 CCAAGTCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:134894755 original size:53 final size:53
Alignment explanation
Indices: 134894576--134894875 Score: 350
Period size: 55 Copynumber: 5.6 Consensus size: 53
134894566 GTAAGATAAG
* * * * * *
134894576 GATATCATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGACAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGCAAA
* *
134894630 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAA
* * * *
134894685 GGT-CCTATGTAAGACCATGACAAGGCATGGCATTGGTGAGTTCATAAGGCAAA
1 GATACC-ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAA
*
134894738 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAGTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT--CATAAGGCAAA
* * * * * **
134894793 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCATG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAA
*
134894846 GATACCACGTAAGACCATGTCAAGACATGG
1 GATACCATGTAAGACCATGTCAAGACATGG
134894876 TAATGTTAAG
Statistics
Matches: 211, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
53 78 0.37
54 42 0.20
55 91 0.43
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGCAAA
Found at i:134894765 original size:108 final size:108
Alignment explanation
Indices: 134894581--134894875 Score: 473
Period size: 108 Copynumber: 2.7 Consensus size: 108
134894571 ATAAGGATAT
* * * * * *
134894581 CATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGACAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
134894646 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * *
134894690 TATGTAAGACCATGACAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
*
134894755 TGTCAAGACATGGCATTGATGAGTTAGTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
134894798 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCATGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
134894863 TGTCAAGACATGG
66 TGTCAAGACATGG
134894876 TAATGTTAAG
Statistics
Matches: 171, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 138 0.81
109 33 0.19
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:134895936 original size:14 final size:14
Alignment explanation
Indices: 134895917--134895944 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
134895907 GCAACAGGGG
134895917 AAACTTTAACTAAT
1 AAACTTTAACTAAT
134895931 AAACTTTAACTAAT
1 AAACTTTAACTAAT
134895945 TGACTAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
AAACTTTAACTAAT
Found at i:134897461 original size:15 final size:15
Alignment explanation
Indices: 134897441--134897509 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
134897431 GTATCTTGGG
134897441 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
134897456 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
134897471 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
134897486 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
134897501 TTTCTTTAT
1 TTTCTTTAT
134897510 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:134897510 original size:30 final size:30
Alignment explanation
Indices: 134897432--134897519 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
134897422 CATAGTATCG
* * * *
134897432 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
134897462 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
134897492 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
134897520 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:134900002 original size:46 final size:46
Alignment explanation
Indices: 134899935--134900109 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
134899925 TGTAACCCGC
*
134899935 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134899981 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
134900031 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134900074 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
134900110 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:134900058 original size:93 final size:93
Alignment explanation
Indices: 134899943--134900113 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
134899933 GCCCATAAGT
** * *
134899943 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134900008 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
134900036 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134900101 CGAGTTCGGATGC
66 CGAGTTCGGATGC
134900114 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:134901546 original size:46 final size:46
Alignment explanation
Indices: 134901479--134901653 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
134901469 TGTAACCCGC
*
134901479 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134901525 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
134901575 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134901618 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
134901654 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:134901602 original size:93 final size:93
Alignment explanation
Indices: 134901487--134901657 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
134901477 GCCCATAAGT
** * *
134901487 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134901552 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
134901580 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134901645 CGAGTTCGGATGC
66 CGAGTTCGGATGC
134901658 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:134903090 original size:46 final size:46
Alignment explanation
Indices: 134903023--134903197 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
134903013 TGTAACCCGC
*
134903023 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134903069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
134903119 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
134903162 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
134903198 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:134903146 original size:93 final size:93
Alignment explanation
Indices: 134903031--134903201 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
134903021 GCCCATAAGT
** * *
134903031 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134903096 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
134903124 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
134903189 CGAGTTCGGATGC
66 CGAGTTCGGATGC
134903202 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:134905308 original size:30 final size:30
Alignment explanation
Indices: 134905230--134905317 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
134905220 CATAGTATCA
* * * *
134905230 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
134905260 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
134905290 TATCTTGGATTTCTTTATT-TGGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
134905318 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 9 0.18
30 40 0.80
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:134905316 original size:14 final size:15
Alignment explanation
Indices: 134905239--134905318 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
134905229 ATATCTTGGG
*
134905239 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
134905254 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
134905269 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
134905284 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
134905299 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
134905313 TTTCTT
1 TTTCTT
134905319 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 11 0.20
15 43 0.78
16 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:134919256 original size:46 final size:46
Alignment explanation
Indices: 134919206--134919377 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
134919196 TGGTTGAGCA
*
134919206 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
134919252 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
134919298 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
134919344 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
134919378 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 6 0.06
44 3 0.03
45 7 0.07
46 73 0.70
47 7 0.07
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:134919360 original size:92 final size:93
Alignment explanation
Indices: 134919203--134919372 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
134919193 GGATGGTTGA
* *
134919203 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
134919268 TGAGTC-GAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* * *
134919295 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
134919360 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
134919373 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.92
93 6 0.08
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:134919638 original size:19 final size:20
Alignment explanation
Indices: 134919601--134919638 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
134919591 ATAAGGTGGT
134919601 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
134919621 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
134919639 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:134928273 original size:28 final size:28
Alignment explanation
Indices: 134928241--134928310 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
134928231 AATGAGATTG
134928241 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
134928269 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
134928297 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
134928311 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:134941894 original size:30 final size:29
Alignment explanation
Indices: 134941800--134941901 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
134941790 TATAGTGAAT
* * *
134941800 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
134941829 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
134941857 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
134941887 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
134941902 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:134947121 original size:29 final size:28
Alignment explanation
Indices: 134947033--134947134 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
134947023 TACTCAATCA
* *
134947033 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
134947062 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
134947091 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
134947120 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
134947135 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:134951217 original size:29 final size:29
Alignment explanation
Indices: 134951179--134951255 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
134951169 AATTATATTC
**
134951179 ATATGGCCCATTAGGGTCAAACCAC-ATGT
1 ATATGGCCCATTAGGCCCAAACCACAAT-T
*
134951208 ATATGGCCCATTAGGCCCAAATCACAATT
1 ATATGGCCCATTAGGCCCAAACCACAATT
*
134951237 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
134951256 GTCACATTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 41 0.95
30 2 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAACCACAATT
Found at i:134952740 original size:16 final size:16
Alignment explanation
Indices: 134952716--134952747 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
134952706 AAGTTTAGAA
*
134952716 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
134952732 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
134952748 GCGTTACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:134954220 original size:33 final size:33
Alignment explanation
Indices: 134954183--134954253 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
134954173 ATACTTGAGT
*
134954183 TTGAAGGTAAATTGGAAAGGTATTTTCCTTTGG
1 TTGAAGGTAAATTGGAAAGGTATTTGCCTTTGG
** **
134954216 TTGAATTTACTTTGGAAAGGTATTTGCCTTTGG
1 TTGAAGGTAAATTGGAAAGGTATTTGCCTTTGG
134954249 TTGAA
1 TTGAA
134954254 TTTACTTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.42
Consensus pattern (33 bp):
TTGAAGGTAAATTGGAAAGGTATTTGCCTTTGG
Found at i:134954254 original size:33 final size:33
Alignment explanation
Indices: 134954194--134954260 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
134954184 TGAAGGTAAA
*
134954194 TTGGAAAGGTATTTTCCTTTGGTTGAATTTACT
1 TTGGAAAGGTATTTGCCTTTGGTTGAATTTACT
134954227 TTGGAAAGGTATTTGCCTTTGGTTGAATTTACT
1 TTGGAAAGGTATTTGCCTTTGGTTGAATTTACT
134954260 T
1 T
134954261 ATAATAACAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.09, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGGAAAGGTATTTGCCTTTGGTTGAATTTACT
Found at i:134962259 original size:39 final size:39
Alignment explanation
Indices: 134962124--134962308 Score: 219
Period size: 40 Copynumber: 4.7 Consensus size: 39
134962114 TCGGATGATA
* * **
134962124 ACCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACT-AT
* * *
134962164 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
134962203 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* *
134962243 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
134962282 AACCGGGCTAAGTCCCGAAGGAATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
134962309 AGCTAGTGGC
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
39 36 0.29
40 86 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:134962341 original size:79 final size:80
Alignment explanation
Indices: 134962121--134962331 Score: 268
Period size: 79 Copynumber: 2.7 Consensus size: 80
134962111 TGTTCGGATG
134962121 ATAACCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
* *
134962184 CATTCGTGCGAGCTACT
64 CATTCGTGCAAGCTACC
* * * * ***
134962201 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
* *
134962265 TTTGTGCAAGTTACC
66 TTCGTGCAAGCTACC
*
134962280 ATAACCGGGCTAAGTCCCGAAGGAATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
134962332 ACTCTGAAGG
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 73 0.67
80 32 0.29
81 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACC
Found at i:134970820 original size:47 final size:47
Alignment explanation
Indices: 134970769--134971151 Score: 568
Period size: 47 Copynumber: 8.1 Consensus size: 47
134970759 TTAGGATTTT
*
134970769 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
134970816 ATGTGATGGATGTGAACATGCGCATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
134970863 ATGTGATGGATGTGAACATGCGCATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
134970910 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
134970961 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
134971008 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
134971055 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
134971102 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
134971149 ATG
1 ATG
134971152 CGAAACGTGT
Statistics
Matches: 316, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 272 0.86
49 2 0.01
51 42 0.13
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:134970956 original size:145 final size:141
Alignment explanation
Indices: 134970769--134971151 Score: 568
Period size: 145 Copynumber: 2.7 Consensus size: 141
134970759 TTAGGATTTT
* * * *
134970769 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
134970834 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGCGCATGTGTGATAAGG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGCATGTGTGATAAGG
134970899 CCGAATGGCCA
131 CCGAATGGCCA
*
134970910 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
134970975 AACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGAT
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGCATGTGTGAT
134971040 AAGGCCGAATGGCCA
127 AAGGCCGAATGGCCA
* * *
134971055 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
134971120 TGAATATATGTGGTAAGGCCGAATGGCTAATG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATG
134971152 CGAAACGTGT
Statistics
Matches: 218, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
141 85 0.39
143 2 0.01
145 131 0.60
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGCATGTGTGATAAGG
CCGAATGGCCA
Found at i:134971096 original size:192 final size:188
Alignment explanation
Indices: 134970769--134971151 Score: 613
Period size: 192 Copynumber: 2.0 Consensus size: 188
134970759 TTAGGATTTT
* * *
134970769 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * *
134970834 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATGCGCATGTGTGATAAGG
66 TACGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCACATATGAGATAAGG
*
134970899 CCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
131 CCGAATGGCCAATGTGATGAATGTGAACACG-A-ATATATGTG-G-TAAGGCCGAATGGCCA
134970961 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
134971026 TACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
66 TACGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCACATATGAGATAAGG
* *
134971091 CCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
131 CCGAATGGCCAATGTGATGAATGTGAACACGAATATATGTGGTAAGGCCGAATGGCCA
134971149 ATG
1 ATG
134971152 CGAAACGTGT
Statistics
Matches: 178, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
188 18 0.10
189 1 0.01
190 9 0.05
191 1 0.01
192 149 0.84
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (188 bp):
ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCACATATGAGATAAGG
CCGAATGGCCAATGTGATGAATGTGAACACGAATATATGTGGTAAGGCCGAATGGCCA
Found at i:134971191 original size:46 final size:46
Alignment explanation
Indices: 134971125--134971215 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
134971115 GAACATGAAT
* * *
134971125 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
134971171 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
134971216 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:134971222 original size:141 final size:140
Alignment explanation
Indices: 134970769--134971200 Score: 438
Period size: 145 Copynumber: 3.0 Consensus size: 140
134970759 TTAGGATTTT
* * * * *
134970769 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* ** * * * * * * *
134970834 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAACATG-CGCATGTGTGATAAG
66 TACATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA-GACGGATATGTGATAAA
*
134970898 GCCGAATGGCCA
129 GCCAAATGGCCA
** * *
134970910 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
* * * * * * *
134970975 AACATACGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATACGTATGTGTGAT
62 AACATACATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACAGACGGATATGTGAT
* *
134971040 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
134971055 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * ** * *
134971120 TGA-ATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATGGATATGTGGTAAA
66 T-ACATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-AACAGACGGATATGTGATAAA
*
134971183 GCCAAATGGCTA
129 GCCAAATGGCCA
134971195 ATGTGA
1 ATGTGA
134971201 GATATGTATG
Statistics
Matches: 254, Mismatches: 30, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
139 5 0.02
140 29 0.11
141 87 0.34
142 1 0.00
143 2 0.01
145 130 0.51
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.25
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAGACGGATATGTGATAAAGC
CAAATGGCCA
Found at i:134971409 original size:37 final size:37
Alignment explanation
Indices: 134971359--134971545 Score: 320
Period size: 37 Copynumber: 5.1 Consensus size: 37
134971349 GGAAATATAT
*
134971359 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
134971396 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
134971433 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
134971470 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
134971507 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
134971544 TC
1 TC
134971546 TGAGCTAAAG
Statistics
Matches: 142, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 142 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:134978867 original size:40 final size:39
Alignment explanation
Indices: 134978777--134978915 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 39
134978767 ATGTCCGGGC
* * * *
134978777 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGG-T
134978817 TAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAATCCAGGT
1 TAAG-TCCCGAAGGCATTTGTGTGAGTTACTAAATCC-GGT
* * *
134978857 TAAGTCCCGAAGACATTTGTGCGAGCTACTATAA-CCGGGT
1 TAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AATCC-GGT
* *
134978897 TATGTCCCGAAGGTATTTG
1 TAAGTCCCGAAGGCATTTG
134978916 AACGAGTAGC
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 71 0.86
41 11 0.13
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGT
Found at i:134978929 original size:40 final size:40
Alignment explanation
Indices: 134978854--134978938 Score: 93
Period size: 40 Copynumber: 2.1 Consensus size: 40
134978844 ACTAAATCCA
**
134978854 GGTTAAGTCCCGAAGACATTTGTGCGAGCTACTATAACCG
1 GGTTAAGTCCCGAAGACATTTGAACGAGCTACTATAACCG
* ** *
134978894 GGTTATGTCCCGAAGGTATTTGAACGAG-TAGCTATATCC-
1 GGTTAAGTCCCGAAGACATTTGAACGAGCTA-CTATAACCG
134978933 GGTTAA
1 GGTTAA
134978939 ACTCCGAAGG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
39 7 0.19
40 30 0.81
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
GGTTAAGTCCCGAAGACATTTGAACGAGCTACTATAACCG
Found at i:134981070 original size:49 final size:49
Alignment explanation
Indices: 134980998--134981227 Score: 284
Period size: 49 Copynumber: 4.6 Consensus size: 49
134980988 GGTACGCATG
* * *
134980998 GTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCCGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACGTA
* ** *
134981047 GTAGCCTACACTTAGTACTACACACGTGACCTAACCAT-CTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCAG-TACACGTA
* * *
134981097 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CAGGTACGCATA
1 GTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCA-GTACACGTA
* * *
134981148 GTAGCCTGCACTTAGTACTACACATGGGACCAATTATCTAGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACGTA
134981197 GTAGCCTGCACTTAGTACTACACACGTGACC
1 GTAGCCTGCACTTAGTACTACACACGTGACC
134981228 TCACAATAGC
Statistics
Matches: 154, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
49 70 0.45
50 46 0.30
51 37 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACGTA
Found at i:134981218 original size:100 final size:99
Alignment explanation
Indices: 134980998--134981227 Score: 311
Period size: 100 Copynumber: 2.3 Consensus size: 99
134980988 GGTACGCATG
* * * *
134980998 GTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCCGTACACGTAGTAGCCTACACTTAGT
1 GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCACGTACACATAGTAGCCTACACTTAGT
*
134981063 ACTACACACGTGACCTAACCATCTGATACACGTA
66 ACTACACACGGGACCTAACCATCTGATACACGTA
* * * *
134981097 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACTTA
1 GTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCACGTACACATAGTAGCCTACACTTA
* **
134981162 GTACTACACATGGGACC-AATTATCT-AGTACACGTA
64 GTACTACACACGGGACCTAACCATCTGA-TACACGTA
134981197 GTAGCCTGCACTTAGTACTACACACGTGACC
1 GTAGCCTGCACTTAGTACTACACACGTGACC
134981228 TCACAATAGC
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
99 29 0.25
100 46 0.40
101 40 0.35
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
GTAGCCTGCACTTAGTACTACACACGTGACCAATTATCACGTACACATAGTAGCCTACACTTAGT
ACTACACACGGGACCTAACCATCTGATACACGTA
Found at i:134983333 original size:40 final size:41
Alignment explanation
Indices: 134983288--134983454 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
134983278 CGGAATATAA
*
134983288 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
134983328 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
134983368 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
134983408 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
134983447 CCGGATAT
1 CCGGATAT
134983455 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:134984302 original size:17 final size:19
Alignment explanation
Indices: 134984279--134984324 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
134984269 AAGAAGCATG
134984279 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
134984297 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
134984315 AATCATGCTC
1 AATCATGCTC
134984325 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:134991342 original size:40 final size:41
Alignment explanation
Indices: 134991297--134991463 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
134991287 CGGAATATAA
*
134991297 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
134991337 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
134991377 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
134991417 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
134991456 CCGGATAT
1 CCGGATAT
134991464 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:134992310 original size:17 final size:19
Alignment explanation
Indices: 134992287--134992332 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
134992277 AAGAAGCATG
134992287 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
134992305 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
134992323 AATCATGCTC
1 AATCATGCTC
134992333 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:134997146 original size:40 final size:40
Alignment explanation
Indices: 134997101--134997267 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
134997091 CGGAATATAA
134997101 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
134997141 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
134997181 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
134997221 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
134997260 CCGGATAT
1 CCGGATAT
134997268 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:134997251 original size:80 final size:79
Alignment explanation
Indices: 134997101--134997267 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
134997091 CGGAATATAA
* *
134997101 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
134997166 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
134997181 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
134997243 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
134997260 CCGGATAT
1 CCGGATAT
134997268 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:134998115 original size:17 final size:19
Alignment explanation
Indices: 134998092--134998137 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
134998082 AAGAAGCATG
134998092 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
134998110 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
134998128 AATCATGCTC
1 AATCATGCTC
134998138 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:134999320 original size:220 final size:220
Alignment explanation
Indices: 134998938--135000965 Score: 2967
Period size: 220 Copynumber: 9.3 Consensus size: 220
134998928 TCGGGGTGTC
* * * * *
134998938 ACATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGTATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* *
134999003 GTGTTTACAAGGGGCAAATTGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* * *
134999068 TTCAAGATGATTTGGCATCTCTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
* *
134999133 ATATTCAATGGAGAGCAGATCGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* **
134999158 ACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATTAAAGATGATTTGGCATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* * *
134999223 GTGTTTACAATGAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* *
134999288 TCAAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCC
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
*
134999353 ATATTCGACGGAGAGCAGATTGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* * * * * *
134999378 GCATAGCATATCTGACCTATCGATTTTTTCACAACGAAGCAGA-CTCAAGATGATTTGGCATTCT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGGCATTCT
134999442 TGTGTTTACAAGTG-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCA
65 TGTGTTTACAAG-GAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCA
134999506 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
129 GATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
* *
134999571 CCATATTCGACGGAGTGGAGATCGAAG
194 CCATATTCGACGGAGAGCAGATCGAAG
* * * *
134999598 ACATAGCAGATCGGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* *
134999663 GTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
*
134999728 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCT
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
*
134999793 ATTTTCGACGGAGAGCAGATCGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* * *
134999818 ACATAGCAGATTTGACCTTTGGATGTTTTCCCATCGAAGCAGATCCAAGATGATTAGGCATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* * * * *
134999883 TTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTGAAGCATA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* * * * *
134999947 TCTAAGATGATTTGGCATCTCTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCT
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
*
135000012 ATATTCGACGAAGAGCAGATCGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* *
135000037 ACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* * *
135000102 GTGCTTACGAGGAGCAAATTGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* * *
135000167 TCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGTATCTCC
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
*
135000232 ATACTCGACGGAGAGCAGATCGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* * * *
135000257 ACATAGCAGATCTAACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGCATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* * * *
135000322 GTGTTTAGAAGGAGCAAATTGAAGACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGCCGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* *
135000387 TTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
135000452 ATATTCGACGGAGAGCAGATCGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* *
135000477 ACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAAGATCCAAGATGATTTGGCATTCT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG-CAGATCCAAGATGATTTGGCATTCT
* * * * *
135000542 TATGTTTACAAAGACCAAATGGAAGACATAAC-GATCTGACCTTCAGGTGTTTACACTGAAGCAG
65 TGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
* *
135000606 ATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGCATCTC
130 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTC
* *
135000671 CAT-TGTCGATGGAGAGCAGATTGAAG
195 CATAT-TCGACGGAGAGCAGATCGAAG
* * * *
135000697 ACATAGTAGATATGACCTTTGGATGTTTTCACGTCGAAGCAGATCCAAGGTGATTT-GCATTCTT
1 ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
* * *
135000761 GTGTTTATAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGA
66 GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
* * * * * * * *
135000826 TCTAAGATGATTT----T-AC---A-TATCTGAGATCAAATTGAATAAATAGATTTGGCATCTCC
131 TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
* *
135000882 ATATTCGACGGAGAGTAGAACGAAG
196 ATATTCGACGGAGAGCAGATCGAAG
* * * *
135000907 ACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGATGATTTGGCAT
1 ACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
135000966 CTCTGTATTG
Statistics
Matches: 1630, Mismatches: 167, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
208 19 0.01
209 5 0.00
210 75 0.05
211 4 0.00
214 1 0.00
215 1 0.00
218 33 0.02
219 259 0.16
220 1182 0.73
221 51 0.03
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
ACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
GTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGA
TCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
ATATTCGACGGAGAGCAGATCGAAG
Found at i:134999329 original size:87 final size:89
Alignment explanation
Indices: 134999151--134999334 Score: 220
Period size: 87 Copynumber: 2.1 Consensus size: 89
134999141 TGGAGAGCAG
* *
134999151 ATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATTAAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
* **
134999216 CATTCTTGTGTTTACAATGAGCAA
66 CATTCTTGTATTTACAATGAAAAA
*
134999240 ATCGAAGACATAGCAGATTTGACCTTCAGG-TG-TTT-ACA-CTGAAGCAGATCAAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGATTTCACATC-GAAGCAGATCAAAGATGATTT
134999301 GGCA-TCTCTGTATTGT-CAGA-GAAAAA
64 GGCATTCT-TGTATT-TACA-ATGAAAAA
134999327 ATCGAAGA
1 ATCGAAGA
134999335 AACAGATTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
86 4 0.05
87 46 0.55
88 5 0.06
89 27 0.32
90 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
CATTCTTGTATTTACAATGAAAAA
Found at i:135000136 original size:89 final size:87
Alignment explanation
Indices: 135000019--135000184 Score: 226
Period size: 89 Copynumber: 1.9 Consensus size: 87
135000009 TCTATATTCG
* * * *
135000019 ACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCC
1 ACGAAGAGCAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGAAGATCC
*
135000083 AAGATGATTTGGCATTCTTGTGCTT
63 AAGATGATCTGGCATTCTTGTGCTT
* * *
135000108 ACGAGGAGCAAATTGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAG
1 ACGAAGAGCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGAAGATCCAAG
135000173 ATGATCTGGCAT
66 ATGATCTGGCAT
135000185 CTCTGTATTG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
87 24 0.35
88 1 0.01
89 41 0.60
90 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (87 bp):
ACGAAGAGCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGAAGATCCAAG
ATGATCTGGCATTCTTGTGCTT
Found at i:135000743 original size:879 final size:877
Alignment explanation
Indices: 134998938--135000965 Score: 3044
Period size: 879 Copynumber: 2.3 Consensus size: 877
134998928 TCGGGGTGTC
* * * * * *
134998938 ACATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGTATTCTT
1 ACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGA-TTGGCATTCTT
* *
134999003 GTGTTTACAAGGGGCAAATTGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGA
65 GTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGA
*
134999068 T-TCAAGATGATTTGGCATCTCTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTC
130 TCT-AAGATGATTTGGCATCTCTATATTGT-AGAGAACAAATCGAAGAAACAGATTTGGCATCTC
* * *
134999132 CATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAG
193 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAG
* * * * *
134999197 CAGATTAAAGATGATTTGGCATTCTTGTGTTTACAATGAGCAAATCGAAGACATAGCAGATTTGA
257 CAGATTCAAGATGATTTGGCATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAACAGATCTGA
*
134999262 CCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAA
322 CCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAA
* * * * * *
134999327 ATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGGCATAGCATATCTG
387 ATCAAAGAAACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAGATCTA
*
134999392 ACCTATCGATTTTTTCACAACGAAGCAGACTCAAGATGATTTGGCATTCTTGTGTTTACAAGTGG
452 ACCTATCGATTTTTTCACAACAAAGCAGACTCAAGATGATTTGGCATTCTTGTGTTTACAAGTGG
* *
134999457 CAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTG
517 CAAATTGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTC
*
134999522 GCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGT
582 GCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGA
* * * *
134999587 GGAGATCGAAGACATAGCAGATCGGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGAT
647 GCAGATCGAAGACATAGCAGATCGGACCTTTGAATGTTTTCACATCGAAGAAGATCCAAGATGAT
* * ** * *
134999652 TTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAAGTGTTTAC
712 TTAGAATTCTTATGTTTACAAAGACCAAATGGAAGACATAACAGATCTGACCTTCAAGTGTTTAC
* *
134999717 ACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGAT
777 ACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGAT
* *
134999782 TTGGCATCTCTATTTTCGACGGAGAGCAGATCGAAG
842 TTGGCATCTCCATTGTCGACGGAGAGCAGATCGAAG
* *
134999818 ACATAGCAGATTTGACCTTTGGATGTTTTCCCATCGAAGCAGATCCAAGATGATTAGGCATTCTT
1 ACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATT-GGCATTCTT
* * * * *
134999883 TTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTGAAGCATA
65 GTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGA
* *
134999947 TCTAAGATGATTTGGCATCTCTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCT
130 TCTAAGATGATTTGGCATCTCTATATTGT-AGAGAACAAATCGAAGAAACAGATTTGGCATCTCC
* *
135000012 ATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGA
194 ATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGC
* * *
135000077 AGATCCAAGATGATTTGGCATTCTTGTGCTTACGAGGAGCAAATTGAAGACATAACAGATCTGAC
258 AGATTCAAGATGATTTGGCATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAACAGATCTGAC
* *
135000142 CTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAA
323 CTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAAA
*
135000207 TCAAAGAAACAGATTTGGTATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAA
388 TCAAAGAAACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAA
* * * *
135000272 CCT-TTGGTTGTTTTCACATCAAAGCAGA-TACAAGATGATTTGGCATTCTTGTGTTTAGAAG-G
453 CCTATCGATT-TTTTCACAACAAAGCAGACT-CAAGATGATTTGGCATTCTTGTGTTTACAAGTG
* * *
135000334 AGCAAATTGAAGACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGCCGATTCAAGATGATT
516 -GCAAATTGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATT
135000399 TCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
580 TCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
*
135000464 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAAGATCCAAGAT
645 GAGCAGATCGAAGACATAGCAGATCGGACCTTTGAATGTTTTCACATCGAAG-AAGATCCAAGAT
* * *
135000529 GATTTGGCATTCTTATGTTTACAAAGACCAAATGGAAGACATAAC-GATCTGACCTTCAGGTGTT
709 GATTTAGAATTCTTATGTTTACAAAGACCAAATGGAAGACATAACAGATCTGACCTTCAAGTGTT
135000593 TACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACA
774 TACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACA
* *
135000658 GATTTGGCATCTCCATTGTCGATGGAGAGCAGATTGAAG
839 GATTTGGCATCTCCATTGTCGACGGAGAGCAGATCGAAG
* * * *
135000697 ACATAGTAGATATGACCTTTGGATGTTTTCACGTCGAAGCAGATCCAAGGTGATTTGCATTCTTG
1 ACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGCATTCTTG
*
135000762 TGTTTATAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGAT
66 TGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGAT
* * * * * *
135000827 CTAAGATGATTT----T-AC-ATA-TCT-GAGATCAAATTGAATAAATAGATTTGGCATCTCCAT
131 CTAAGATGATTTGGCATCTCTATATTGTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCAT
* * * * *
135000884 ATTCGACGGAGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGC-T-GAAGCAG
196 ATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGTGTTTTCACATCGAAGCAG
135000947 ATTCAAGATGATTTGGCAT
260 ATTCAAGATGATTTGGCAT
135000966 CTCTGTATTG
Statistics
Matches: 1039, Mismatches: 101, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
868 24 0.02
869 1 0.00
870 76 0.07
871 2 0.00
872 2 0.00
873 3 0.00
874 1 0.00
875 1 0.00
878 51 0.05
879 738 0.71
880 140 0.13
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (877 bp):
ACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGCATTCTTG
TGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGAT
CTAAGATGATTTGGCATCTCTATATTGTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCAT
ATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTGTTTTCACATCGAAGCAGA
TTCAAGATGATTTGGCATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAACAGATCTGACCTT
CAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAAATCA
AAGAAACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCT
ATCGATTTTTTCACAACAAAGCAGACTCAAGATGATTTGGCATTCTTGTGTTTACAAGTGGCAAA
TTGAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTCGCAT
CTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
ATCGAAGACATAGCAGATCGGACCTTTGAATGTTTTCACATCGAAGAAGATCCAAGATGATTTAG
AATTCTTATGTTTACAAAGACCAAATGGAAGACATAACAGATCTGACCTTCAAGTGTTTACACTG
AAGCAGATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGG
CATCTCCATTGTCGACGGAGAGCAGATCGAAG
Found at i:135001309 original size:220 final size:220
Alignment explanation
Indices: 135000902--135001758 Score: 1259
Period size: 220 Copynumber: 3.9 Consensus size: 220
135000892 GAGAGTAGAA
* * *
135000902 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* * * * *
135000967 TCTGTATTGTCAGAGAAAAAATCGCAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * * * * *
135001032 TCGAAGGCGTAGCACATCTGACCCTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
* *
135001097 ATTCTTGTGTTTACAAGGGGAAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135001122 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT-AAAGCATATCCAAGATGATTTGGAAT
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAA-CAGATCCAAGATGATTTGGCAT
* *
135001186 CTCTGTATTGTCAGAGA-ACAAATCGAAGAAATAGATTTGGCAACTCCATATTCAATGGAGAGCA
65 CTCTGTATTGTCAGAGAGA-AAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCA
* * *
135001250 GATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTG
129 GATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTG
135001315 GCATTCTTGTGTTTACAAGGAGCAAAT
194 GCATTCTTGTGTTTACAAGGAGCAAAT
* * * * *
135001342 CGAAGACATAGTAGATTTGACCTCCAGGTGTTTACACTGAAACAGATCTAAGATTATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* *
135001407 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATATTCAACAGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * *
135001472 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTAGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
135001537 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * *
135001562 CGAAGACATAGCAAATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* *
135001627 TCTATATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATATTCAACGGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * * *
135001692 TCGAAGGCATAGAAGATCTGACCTTTGGATGTGTACATAACGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
135001757 AT
196 AT
135001759 CCCTGTATTA
Statistics
Matches: 580, Mismatches: 53, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
219 3 0.01
220 573 0.99
221 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAAT
Found at i:135001795 original size:133 final size:133
Alignment explanation
Indices: 135001606--135001891 Score: 378
Period size: 133 Copynumber: 2.2 Consensus size: 133
135001596 CACTGAAACG
* * * * *
135001606 GATCTAAGATGATTTGGCATCTCTATATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCT
1 GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCT
* * *
135001671 CCATATTCAACGGAGAGCAGATCGAAGGCATAGAAGATCTGACCTTTGGATGTGTACATAACGAA
66 CCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACAAA
135001736 GCA
131 GCA
* *
135001739 GATCCAAGATGATTTGGCATCCCTGTATTATCAGAGA-ATAAATC-AGAGAAACAGATTTGGCAT
1 GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGA-AAATCGA-AGAAACAGATTTGGCAT
* * * * * * *
135001802 CTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCACATCA
64 CTCCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACA
135001867 AAGCA
129 AAGCA
*
135001872 GATAAAAGATGATTTGGCAT
1 GATCAAAGATGATTTGGCAT
135001892 TCTTGTGTTT
Statistics
Matches: 133, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
132 2 0.02
133 131 0.98
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (133 bp):
GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCT
CCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACAAA
GCA
Found at i:135001814 original size:573 final size:566
Alignment explanation
Indices: 135000574--135002886 Score: 2183
Period size: 573 Copynumber: 4.1 Consensus size: 566
135000564 AAGACATAAC
* * * * *
135000574 GATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGC
1 GATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTATT-T
* * *
135000636 CAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCAT-TGTCGATGGAGAGCAGATTGAAGACA
64 CAGAGAACAAATCG-AGAAACAGATTTGGCATCTCCATAT-TCAATGGAGAGCAGATCGAAGGCA
* * * * * *
135000700 TAGTAGATATGACCTTTGGATGTTTTCACGTCGAAGCAGATCCAAGGTGATTT-GCATTCTTGTG
127 TAGCAGAT-TGACCTTTGTATGTTTTCACATCAAAGTAGAT--AAGATGATTTGGCATTCTTGTG
* *
135000764 TTTATAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCT
189 TTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCT
** * ** * *
135000829 AAGATGATTTTACATATC-----TG--AGA-TCAAATTGAATAAATAGATTTGGCATCTCCATAT
254 AAGATGATTTGGCATCTCTTTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATAT
* * * * * * *
135000886 TCGACGGAGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGC-T-GAAGCAGAT
319 TCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTT-TGATGTTTTCACATCGAAGCAGAT
* * ** * *
135000949 TCAAGATGATTTGGCA-TCTCTGTATTGT-C-AGAGAAAAAATCGCAGA-A-A-CAGATTCGGCA
383 CCAAGATGATTTGGCATTCT-TGTGTT-TACAAG-GAGCAAATCGAAGACATAGCAGA-TCTG-A
* * * * * ** * * * *
135001008 TCTCCA--T-ATT-CGACGGAGAGCAGATCGAAG--GCGTAGCACATCTGACCCTTGGATGTTTG
443 CCTTCAGGTGTTTAC-ACTGA-AGCAGATCCAAGATGATTTG-GCATCT----C-TGTAT-TGT-
* * ** * * * *
135001067 CATAACGAAGCAGATTC-AAG--AT-GATTTGGCAT-TCTTGTGTTTACAA-GG-G-GAAAATTG
498 CA-GA-GAA-CA-AATCGAAGAAATAGATTTGGCATCTC-CAT-ATT-CAACGGAGAGCAGATCG
*
135001124 AAGACATAGCA
556 AAGGCATAGCA
* * * * * *
135001135 GATCTGACCTTCAGG-TGTTTACAC-T-AAAGCATATCCAAGATGATTTGGAATCTCTGTATTGT
1 GATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTATT-T
* *
135001197 CAGAGAACAAATCGAAGAAATAGATTTGGCAACTCCATATTCAATGGAGAGCAGATCGAAGGCAT
64 CAGAGAACAAATCG-AGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGGCAT
135001262 AGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
128 AGCAGAT-TGACCTTTGTATGTTTTCACATCAAAGTAGAT--AAGATGATTTGGCATTCTTGTGT
* * * *
135001327 TTACAAGGAGCAAATCGAAGACATAGTAGATTTGACCTCCAGGTGTTTACACTGAAACAGATCTA
190 TTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTA
* * *
135001392 AGATTATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATAT
255 AGATGATTTGGCATCTCTTTATTGTCAGAGA-AAAATCGAAGAAATAGATTTGGCATCTCCATAT
* * * *
135001457 TCAACAGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGAT
319 TCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTG-ATGTTTTCACATCGAAGCAGAT
* * *
135001522 CCAAGATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAAATTTGACCTTC
383 CCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTC
* * * *
135001587 AGGTGTTTACACTGAAACGGATCTAAGATGATTTGGCATCTCTATATTGTCAGAGAGA-AAATCG
448 AGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA-ACAAATCG
* *
135001651 AAGAAATAGATTTGGTATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGAA
512 AAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCA
* * * *
135001706 GATCTGACCTTTGGATGTGTACATAACGAAGCAGATCCAAGATGATTTGGCATCCCTGTATTATC
1 GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTATT-TC
* *
135001771 AGAGAATAAATCAGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATA
65 AGAGAACAAATC-GAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGGCATA
** *
135001836 GCAGATGTGACCTTTGGCTGTTTTCACATCAAAGCAGATAAAAGATGATTTGGCATTCTTGTGTT
129 GCAGAT-TGACCTTTGTATGTTTTCACATCAAAGTAGAT--AAGATGATTTGGCATTCTTGTGTT
* * *
135001901 TACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGAGTTTACACTGAAGCAGATCCAA
191 TACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAA
* * * * *
135001966 CATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTTGCATTTCCATATT
256 GATGATTTGGCATCTCTTTATTGTCAGAGAA-AAATCGAAGAAATAGATTTGGCATCTCCATATT
* *
135002031 CGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATC
320 CGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTT-GATGTTTTCACATCGAAGCAGATC
* * * * * * *
135002096 CAAGATAATTTGGCATTCTTATGATTACAAAGACCAAATCGAAGACATAACAGATCTGACTTTCA
384 CAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCA
* * *
135002161 GGTGTTTACACTGAAGCTGATCCAAGATCATCTGGCATCTCTGTATTG-CTAGAGAACAAATCGA
449 GGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTC-AGAGAACAAATCGA
* * * *
135002225 AGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCA
513 AGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCA
* * * * * *
135002279 GATATGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTT-GCATTCTTGTGTTTAA
1 GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTATTTCA
* * * * * * * ***
135002343 AAGGAGCAAATCGA-AGACATA-GTAG-ATCTGACC-T-TT-AGGTGTTTA-CA-AT-GAA-GCA
66 GA-GAACAAATCGAGAAACAGATTTGGCATCT--CCATATTCA-ATGGAGAGCAGATCGAAGGCA
* * ** * * * * * * *
135002398 GATCTAAGA-TGA--TTT-TACATATCTGAGAACAAA-TTGAATAA-ATAGAATTGGCA-TCTCC
127 TAGC--AGATTGACCTTTGTATGT-TTTCACATCAAAGTAG-ATAAGAT-GATTTGGCATTCT-T
* * * *
135002456 AT-ATT-CGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGC
186 GTGTTTAC-A-AG-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGC
*
135002519 AGAT-TCAAGATGATTTGGCATCTCTTTATTGTCAGAGAAAAATCGAAGAAACAGATTTGGCATC
248 AGATCT-AAGATGATTTGGCATCTCTTTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATC
* * * *
135002583 TCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGA
312 TCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTT-GATGTTTTCACATCGA
* * *
135002648 AGCAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGGGCAAATTGAAGACATAGCAGATCT
376 AGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCT
* *
135002713 GACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATCTCTGTACTGTCAGAGAAC
441 GACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAC
* *
135002778 AAATCGAAGAAATAGATTTGGCATCTCCATATTCAATGGAGGGCAGATCGAAGGCATAGCA
506 AAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCA
* *
135002839 GATCTGACCTCTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTT
1 GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
135002887 AGCTTTCTTG
Statistics
Matches: 1474, Mismatches: 220, Indels: 117
0.81 0.12 0.06
Matches are distributed among these distances:
558 1 0.00
559 8 0.01
560 303 0.21
561 246 0.17
562 98 0.07
564 7 0.00
565 3 0.00
566 8 0.01
567 9 0.01
568 14 0.01
569 14 0.01
570 23 0.02
571 112 0.08
572 25 0.02
573 559 0.38
574 13 0.01
575 3 0.00
576 13 0.01
577 11 0.01
578 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (566 bp):
GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTATTTCA
GAGAACAAATCGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGGCATAGC
AGATTGACCTTTGTATGTTTTCACATCAAAGTAGATAAGATGATTTGGCATTCTTGTGTTTACAA
GGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGA
TTTGGCATCTCTTTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
AGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGATGTTTTCACATCGAAGCAGATCCAAGATG
ATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTT
ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAG
ATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCA
Found at i:135001822 original size:353 final size:353
Alignment explanation
Indices: 135001334--135002111 Score: 1062
Period size: 353 Copynumber: 2.2 Consensus size: 353
135001324 TGTTTACAAG
* * * ** * * * * * *
135001334 GAGCAAATCGAAGACATAGTAGATTTGACCTCCAGGTGTTTACAC--TGAAACAGATCTAAGATT
1 GAGCAGATCGAAGACATAGAAGATCTGACCTTTAGATGTGTACACAACGAAGCAGATCCAAGATA
* * * *
135001397 ATTTGGCATCTCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATATTCAAC
66 ATTTGGCATCCCTGTATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAAC
* * * **
135001462 AGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAG
131 AGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATAAAAG
* *
135001527 ATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAAATTTGACCTTCAGGTG
196 ATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAAATCTGACCTTCAGGAG
* * * *
135001592 TTTACACTGAAACGGATCTAAGATGATTTGGCATCTCTATATTGTCAGAGAGA-AAATCGAAGAA
261 TTTACACTGAAACAGATCCAACATGATTTGACATCTCTATATTGTCAGAGA-ATAAATCGAAGAA
*
135001656 ATAGATTTGGTATCTCCATATTCAACGGA
325 ATAGATTTGGCATCTCCATATTCAACGGA
* * * *
135001685 GAGCAGATCGAAGGCATAGAAGATCTGACCTTTGGATGTGTACATAACGAAGCAGATCCAAGATG
1 GAGCAGATCGAAGACATAGAAGATCTGACCTTTAGATGTGTACACAACGAAGCAGATCCAAGATA
135001750 ATTTGGCATCCCTGTATTATCAGAGA-ATAAATC-AGAGAAACAGATTTGGCATCTCCATATTCA
66 ATTTGGCATCCCTGTATTATCAGAGAGA-AAATCGA-AGAAACAGATTTGGCATCTCCATATTCA
** * *
135001813 ATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCACATCAAAGCAGATAAA
129 ACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATAAA
* * *
135001878 AGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGG
194 AGATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAAATCTGACCTTCAGG
* * *
135001943 AGTTTACACTGAAGCAGATCCAACATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAGA
259 AGTTTACACTGAAACAGATCCAACATGATTTGACATCTCTATATTGTCAGAGAATAAATCGAAGA
* * *
135002008 AATAGATTTTGCATTTCCATATTCGACGGA
324 AATAGATTTGGCATCTCCATATTCAACGGA
* * * *
135002038 GAGCAGATCGAAGACATAGTAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATA
1 GAGCAGATCGAAGACATAGAAGATCTGACCTTTAGATGTGTACACAACGAAGCAGATCCAAGATA
135002103 ATTTGGCAT
66 ATTTGGCAT
135002112 TCTTATGATT
Statistics
Matches: 371, Mismatches: 51, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
351 35 0.09
352 3 0.01
353 333 0.90
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (353 bp):
GAGCAGATCGAAGACATAGAAGATCTGACCTTTAGATGTGTACACAACGAAGCAGATCCAAGATA
ATTTGGCATCCCTGTATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAAC
AGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATAAAAG
ATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAAATCTGACCTTCAGGAG
TTTACACTGAAACAGATCCAACATGATTTGACATCTCTATATTGTCAGAGAATAAATCGAAGAAA
TAGATTTGGCATCTCCATATTCAACGGA
Found at i:135002115 original size:220 final size:219
Alignment explanation
Indices: 135001733--135002544 Score: 1013
Period size: 220 Copynumber: 3.7 Consensus size: 219
135001723 TGTACATAAC
* * * * *
135001733 GAAGCAGATCCAAGATGATTTGGCATCCCTGTATTATCAGAGAATAAA-TCAGAGAAACAGATTT
1 GAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATTGA-AGAAACAGATTT
* * * * *
135001797 GGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCA
65 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCA
* **
135001862 CATCAAAGCAGATAAAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
130 CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
*
135001927 AGATCTGAGCTTCAGGAGTTTACACT
195 AGATCTGA-CTTCAGGTGTTTACACT
* * * * *
135001953 GAAGCAGATCCAACATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTT
1 GAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATTGAAGAAACAGATTTG
* *
135002018 GCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTAGATGTTTTCAC
66 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCAC
* * * * * *
135002083 ATCGAAGCAGATCCAAGATAATTTGGCATTCTTATGATTACAAAGACCAAATCGAAGACATAACA
131 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
135002148 GATCTGACTTTCAGGTGTTTACACT
196 GATCTGAC-TTCAGGTGTTTACACT
* * * * *
135002173 GAAGCTGATCCAAGATCATCTGGCATCTCTGTATTG-CTAGAGAACAAATCGAAGAAACAGATTT
1 GAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTC-AGAGAACAAATTGAAGAAACAGATTT
* * *
135002237 GGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGATATGACCTTTGGATGTTTTCA
65 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCA
* * *
135002302 CATCGAAGTAGATCCAAGATGATTT-GCATTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGT
130 CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* *
135002366 AGATCTGACCTTTAGGTGTTTACAAT
195 AGATCTGA-CTTCAGGTGTTTACACT
* * * * * *
135002392 GAAGCAGATCTAAGATGATTTTACA------TA---TCTGAGAACAAATTGAATAAATAGAATTG
1 GAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATTGAAGAAACAGATTTG
* * * *
135002448 GCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
66 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCAC
*
135002513 -T-GAAGCAGATTCAAGATGATTTGGCATCTCTT
131 ATCGAAGCAGATCCAAGATGATTTGGCAT-TCTT
135002545 TATTGTCAGA
Statistics
Matches: 514, Mismatches: 71, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
208 19 0.04
209 5 0.01
210 84 0.16
211 1 0.00
213 2 0.00
219 75 0.15
220 326 0.63
221 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (219 bp):
GAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATTGAAGAAACAGATTTG
GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCAC
ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
GATCTGACTTCAGGTGTTTACACT
Found at i:135002619 original size:130 final size:130
Alignment explanation
Indices: 135002422--135002675 Score: 361
Period size: 130 Copynumber: 1.9 Consensus size: 130
135002412 TTACATATCT
* * * *
135002422 GAGAACAAATTGAATAAATAGAATTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAG
1 GAGAACAAATCGAAGAAACAGAATTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
*
135002487 CAGATCTGACCTTCAGG-TGTTTACACT-GAAGCAGATTCAAGATGATTTGGCATCTCTTTATTG
66 CAGACCTGACCTT-AGGATGTTTACA-TAGAAGCAGATTCAAGATGATTTGGCAT-TCTTTATTG
135002550 TCA
128 TCA
* *
135002553 GAGAA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAG
1 GAGAACAAATCGAAGAAACAGAATTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
* *
135002617 CAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGCATTCTT
66 CAGACCTGACCTTAGGATGTTTACAT-A-GAAGCAGATTCAAGATGATTTGGCATTCTT
135002676 GTGTTTACAA
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
129 3 0.03
130 72 0.65
131 9 0.08
132 26 0.24
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.26
Consensus pattern (130 bp):
GAGAACAAATCGAAGAAACAGAATTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
CAGACCTGACCTTAGGATGTTTACATAGAAGCAGATTCAAGATGATTTGGCATTCTTTATTGTCA
Found at i:135002848 original size:220 final size:220
Alignment explanation
Indices: 135002468--135005282 Score: 4044
Period size: 220 Copynumber: 12.9 Consensus size: 220
135002458 ATTCGATGGA
* *
135002468 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135002533 TTGGCATCTCTTTATTGTCAGAGAA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * * *
135002597 AGAGCAGATCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135002662 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* *
135002687 GGGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135002752 TTGGAATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCAATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * *
135002817 AGGGCAGATCGAAGGCATAGCAGATCTGACCTCTGTATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135002882 GATTTAGCTTTCTTGTGTTTTCAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * *
135002907 GAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135002972 TTGGCATCTCTGTATTGTCAGAGAAAAAATCTAAGAAATAGATTTGGTATCTCCATATTCAACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * *
135003037 AGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135003102 GATTTGGCATTCTTCTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * *
135003127 GGGCAAATTGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135003192 TTGGCATCTCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTCAATG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGA-AGAAACAGATTTGGCATCTCCATATTCGACG
*
135003256 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
*
135003321 TGATTTGGCATTCTTGTTTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
** *
135003347 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135003412 TTAGCATCTCTGTATTGTCAGAGAA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * *
135003476 AGAGCAGATCGAAGGCATAGAAAATCTGACCTTTGGATGTTTTCACAACGAAGCAGA-CTCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGA
*
135003540 TGATTTGGCATTCTTGTGTTTATAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
*
135003566 GTA-CAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGA
1 G-AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGA
* * * *
135003630 TTTGGCATCTATGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCACCTCCATATTCAACA
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
*
135003695 GAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* *
135003760 TGATTTGACATTTTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * * * * * *
135003786 GAGCAAATCAAAGTCATGGCAGATTTGACCTTCACGTGTTTGCACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * **** * * *
135003851 TTGGCATCTCCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* ** * * *
135003916 AGAGCAGATCAAAGACATAATAGATCTGACATTTGGATGTTTTCACATCTAAGCAGGTCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135003981 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
*
135004006 GAGCGAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
135004071 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATT---C--
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135004131 -GA-C-G---G-AG----AGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135004185 GATTTAGAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * *
135004210 GAGTAAATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135004275 TTGGTATCTCTATATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135004340 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135004405 GATTTAGAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * *
135004430 GAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * *
135004495 TTGGTATCTTTATATTGTCAGAGAACAAATCGAAGAAACAGATTTTGCATCCCCATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135004560 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135004625 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* *
135004650 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * *
135004715 TTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAATAGGTTTGGCATCTCTATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* *
135004779 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135004844 GATTTCGAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* *
135004869 GAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135004934 CTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTTCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * **
135004999 AGAGCAGATCGAAGACATAGCAGATCTGACCTTT-GATTGTTTTCACATCAAAGCAAAGACAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA-TGTTTTCACATCGAAGCAGATCCAAGA
135005063 TGATTTGGCATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * *
135005089 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * * *
135005154 TT----T-AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGGCATCTACATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * *
135005210 AGACCAGATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
135005272 TGATTTGGCAT
195 TGATTTGGCAT
135005283 CTCTGTATTG
Statistics
Matches: 2336, Mismatches: 232, Indels: 66
0.89 0.09 0.03
Matches are distributed among these distances:
204 181 0.08
207 1 0.00
208 2 0.00
209 22 0.01
210 3 0.00
211 84 0.04
212 3 0.00
213 2 0.00
214 2 0.00
215 2 0.00
216 3 0.00
218 1 0.00
219 487 0.21
220 1542 0.66
221 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTGGCATTCTTGTGTTTACAAG
Found at i:135002990 original size:439 final size:439
Alignment explanation
Indices: 135002468--135005282 Score: 4085
Period size: 439 Copynumber: 6.5 Consensus size: 439
135002458 ATTCGATGGA
*
135002468 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAT-TCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCT-AAGATGA
* *
135002532 TTTGGCATCTCTTTATTGTCAGAGAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
65 TTTGGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
* * * * *
135002597 AGAGCAGATCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
130 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGAT
*
135002662 GATTTGGCATTCTTGTGTTTACAAGGGGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
195 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * *
135002727 TACACTGAAGCAGATCCAAGATGATTTGGAATCTCTGTACTGTCAGAGAACAAATCGAAGAAATA
260 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * * *
135002792 GATTTGGCATCTCCATATTCAATGGAGGGCAGATCGAAGGCATAGCAGATCTGACCTCTGTATGT
325 GATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * *
135002857 TTTCACATCGAAGCAGATCCAAGATGATTTAGCTTTCTTGTGTTTTCAAG
390 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135002907 GAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * *
135002972 TTGGCATCTCTGTATTGTCAGAGAAAAAATCTAAGAAATAGATTTGGTATCTCCATATTCAACGG
66 TTGGCATCTCTGTATTGTCAGAG-AAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
* * * *
135003037 AGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
130 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGAT
* * * *
135003102 GATTTGGCATTCTTCTGTTTACAAGGGGCAAATTGAAGACAAAGCAGATCTGACCTTCAAGTGTT
195 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
* *
135003167 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTATCAGAGAATAAATC-AGAGAAAC
260 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA-AGAAAC
135003231 AGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
324 AGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* *
135003296 TTTTCACATCGAAGAAGATCCAAGATGATTTGGCATTCTTGTTTTTACAAG
389 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
** * *
135003347 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* *
135003412 TTAGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA
66 TTGGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGA
* * *
135003477 GAGCAGATCGAAGGCATAGAAAATCTGACCTTTGGATGTTTTCACAACGAAGCAGA-CTCAAGAT
131 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATC-CAAGAT
*
135003541 GATTTGGCATTCTTGTGTTTATAAGGTA-CAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
195 GATTTGGCATTCTTGTGTTTACAAGG-AGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
*
135003605 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAATCGAAGAAAC
259 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
* ** *
135003670 AGATTTGGCACCTCCATATTCAACAGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATG
324 AGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* *
135003735 TTTTCACATCGAAGCAGATCCAAGATGATTTGACATTTTTGTGTTTACAAG
389 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * * * * * *
135003786 GAGCAAATCAAAGTCATGGCAGATTTGACCTTCACGTGTTTGCACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * *** * * * *
135003851 TTGGCATCTCCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGATGG
66 TTGGCATCTCTGTATTGTCAGAGA-AAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
* ** * * * *
135003916 AGAGCAGATCAAAGACATAATAGATCTGACATTTGGATGTTTTCACATCTAAGCAGGTCCAAGAT
130 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGAT
* *
135003981 GATTTGGCATTCTTGTGTTTACAAGGAGCGAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
195 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
135004046 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
260 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
135004111 GATTTGGCATCTCCATATTC------GA-C-G---G-AG----AGCAGATCTGACCTTTGGATGT
325 GATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* *
135004160 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAG
390 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * * * *
135004210 GAGTAAATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* *
135004275 TTGGTATCTCTATATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAA-AAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGG
*
135004340 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
130 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGAT
* * *
135004405 GATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
195 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * * *
135004470 TACACTGAAGCAGGTCCAAGATGATTTGGTATCTTTATATTGTCAGAGAACAAATCGAAGAAACA
260 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135004535 GATTTTGCATCCCCATATTCGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
325 GATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
135004600 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
390 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135004650 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * * * *
135004715 TTGGCATCTCTGTATTGTGAGAAAAAAATCGAAGAAATAGGTTTGGCATCTCTATATTCGATGGA
66 TTGGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGA
* * *
135004780 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATG
131 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGATG
* * * * *
135004845 ATTTCGAATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTT
196 ATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTT
* *
135004910 ACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAA
261 ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAG
* * *
135004975 ATTTGGCATCTTCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT-GATTGT
326 ATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA-TGT
* * **
135005039 TTTCACATCAAAGCAAAGACAAGATGATTTGGCATTCTTGTGTTTACAAG
390 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135005089 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
** * * * * *
135005154 TTTACATATC-----TG--AGA-ACAAATTGAATAAATAGATTTGGCATCTACATATTCGACGGA
66 TTGGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGA
* *
135005211 GACCAGATCGAAGACATAGCAGATCTGACCTTCAGG-TG-TTT-AC-ACTGAAGCAGATCCAAGA
131 GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACAAC-GAAGCAGATCCAAGA
135005272 TGATTTGGCAT
194 TGATTTGGCAT
135005283 CTCTGTATTG
Statistics
Matches: 2158, Mismatches: 189, Indels: 68
0.89 0.08 0.03
Matches are distributed among these distances:
424 372 0.17
428 3 0.00
429 26 0.01
430 5 0.00
431 69 0.03
432 7 0.00
433 1 0.00
434 4 0.00
435 1 0.00
436 2 0.00
438 2 0.00
439 873 0.40
440 792 0.37
441 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (439 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAAAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGA
GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAACGAAGCAGATCCAAGATG
ATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTT
ACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAG
ATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTT
TTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
Found at i:135003387 original size:89 final size:87
Alignment explanation
Indices: 135003258--135003418 Score: 216
Period size: 89 Copynumber: 1.8 Consensus size: 87
135003248 ATTCAATGGA
* * *
135003258 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGAAGATCCAAGATG
*
135003323 ATTTGGCATTCTTGTTTTTACAAG
64 ATTTAGCATTCTTGTTTTTACAAG
** * *
135003347 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGAAGATCCAAGATGA
135003411 TTTAGCAT
65 TTTAGCAT
135003419 CTCTGTATTG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (87 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGAAGATCCAAGATGAT
TTAGCATTCTTGTTTTTACAAG
Found at i:135003704 original size:659 final size:660
Alignment explanation
Indices: 135002468--135005282 Score: 4071
Period size: 659 Copynumber: 4.3 Consensus size: 660
135002458 ATTCGATGGA
* *
135002468 GAGCAGATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135002533 TTGGCATCTCTTTATTGTCAGAGAA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
* * * * * *
135002597 AGAGCAGATCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135002662 GATTTGGCATTCTTGTGTTTACAAGGGGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
196 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * *
135002727 TACACTGAAGCAGATCCAAGATGATTTGGAATCTCTGTACTGTCAGAGAACAAATCGAAGAAATA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * * * *
135002792 GATTTGGCATCTCCATATTCAATGGAGGGCAGATCGAAGGCATAGCAGATCTGACCTCTGTATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGT
** *
135002857 TTTCACATCGAAGCAGATCCAAGATGATTTAGCTTTCTTGTGTTTTCAAGGAGCAAATCGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGAC
* * * *
135002922 ATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGATTTGGCATCTCTGTAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* * * * *
135002987 TGTCAGAGAAAAAATCTAAGAAATAGATTTGGTATCTCCATATTCAACGGAGAGCAGATCGAAGG
521 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGA
* * * * *
135003052 CATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGCATTCTTC
586 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
135003117 TGTTTACAAG
651 TGTTTACAAG
* * * *
135003127 GGGCAAATTGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135003192 TTGGCATCTCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTCAATG
66 TTGGCATCTCTGTATTATCAGAGAACAAATCGA-AGAAACAGATTTGGCATCTCCATATTCGATG
*
135003256 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* ** *
135003321 TGATTTGGCATTCTTGTTTTTACAAGGAGCAAATCGAAGACATATTAGATTTGACCTTCAGGTGT
195 TGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGT
*
135003386 TTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAA-AAATCGAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
* *
135003450 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGAAAATCTGACCTTTGGATG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATG
* * * * *
135003515 TTTTCACAACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTATAAGGTA-CAAATTGAA
390 TTTTCACATCGAAGCAGATC-CAAGATGATTTAGAATTCTTGTGTTTACAAGG-AGCAAATCGAA
*
135003578 GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTATG
453 GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTG
* *
135003643 TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCACCTCCATATTCAACAGAGAGCAGATCGA
518 TATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGA
* * *
135003708 AGGCATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGACATTT
583 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
135003773 TTGTGTTTACAAG
648 TTGTGTTTACAAG
* * * * * * * *
135003786 GAGCAAATCAAAGTCATGGCAGATTTGACCTTCACGTGTTTGCACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * **** * *
135003851 TTGGCATCTCCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGATGG
66 TTGGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
* ** * * *
135003916 AGAGCAGATCAAAGACATAATAGATCTGACATTTGGATGTTTTCACATCTAAGCAGGTCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135003981 GATTTGGCATTCTTGTGTTTACAAGGAGCGAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
196 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
135004046 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
135004111 GATTTGGCATCTCCATATT---C---GA-C-G---G-A-G---AGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGT
* *
135004160 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGAC
* * * *
135004225 ATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGATTTGGTATCTCTATAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* *
135004290 TGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
521 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGA
* *
135004355 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTG
586 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
135004420 TGTTTACAAG
651 TGTTTACAAG
* * *
135004430 GAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * *
135004495 TTGGTATCTTTATATTGTCAGAGAACAAATCGAAGAAACAGATTTTGCATCCCCATATTCGATGG
66 TTGGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
135004560 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135004625 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTT
196 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * * *
135004690 TACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAATA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * * * *
135004754 GGTTTGGCATCTCTATATTCGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGT
* * *
135004819 TTTCACATCGAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAGGAGAAAATCGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGAC
* *
135004884 ATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* * *
135004949 TGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTTCATATTCGACGGAGAGCAGATCGAAGA
521 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGA
* * **
135005014 CATAGCAGATCTGACCTTT-GATTGTTTTCACATCAAAGCAAAGACAAGATGATTTGGCATTCTT
586 CATAGCAGATCTGACCTTTGGA-TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTT
135005078 GTGTTTACAAG
650 GTGTTTACAAG
* * * *
135005089 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * * *
135005154 TT----T-AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGGCATCTACATATTCGACGG
66 TTGGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
* * *
135005210 AGACCAGATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
135005272 TGATTTGGCAT
195 TGATTTGGCAT
135005283 CTCTGTATTG
Statistics
Matches: 1938, Mismatches: 192, Indels: 63
0.88 0.09 0.03
Matches are distributed among these distances:
643 33 0.02
644 540 0.28
645 1 0.00
647 1 0.00
648 27 0.01
649 4 0.00
650 82 0.04
651 4 0.00
652 1 0.00
653 1 0.00
654 3 0.00
655 2 0.00
657 1 0.00
658 3 0.00
659 1001 0.52
660 234 0.12
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (660 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTCTGTATTATCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGT
TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGCAAATCGAAGAC
ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGATCGAAGA
CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAG
Found at i:135005289 original size:342 final size:347
Alignment explanation
Indices: 135004875--135005635 Score: 1079
Period size: 342 Copynumber: 2.2 Consensus size: 347
135004865 CAAGGAGAAA
* *
135004875 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
135004940 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCT-TCATATTCGACGGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCT-ATATTCGACGGAGAGC
*
135005004 AGATCGAAGACATAGCAGATCTGACCTTT-GATTGTTTTCACATCAAAGCAAAGACAAGATGATT
130 AGATCGAAGACATAGCAGATCTAACCTTTGGA-TGTTTTCACATCAAAGCAAAGACAAGATGATT
* * *
135005068 TGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACA
194 GGGCATTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACA
* * * * * *
135005133 CTGAAGTAGATCTAAGATGATTT-T-AC-ATA-TCT-GAGAACAAATTGAATAAATAGATTTGGC
259 CTGAAGCAGATCCAAGATGATTTGTCACTATATTCTAGAGAAAAAATCGAAGAAACAGATTTGGC
*
135005193 ATCTACATATTCGACGGAGACCAG
324 ATCTACATATTCGACGAAGACCAG
135005217 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135005282 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCTATATTCGACGGAGAGCA
* * **
135005347 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAAAGACAAGATGATTGG
* * *
135005412 GCATTCTTTTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATT
196 GCATTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACT
* * * *
135005477 GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTT-G--TCACTATATTCT-AGAGAAAAAATCGAAGAAACAGATTTG
* *
135005542 GCATCTCCATATTCGACGAAGAGCAG
322 GCATCTACATATTCGACGAAGACCAG
* * * * *
135005568 ATCGAAGACATAGCAGATCTCACCTT-TGGTTGTTTTCACATAGAAGAAGATGCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
135005632 GCAT
63 GCAT
135005636 TCTTGTGTTT
Statistics
Matches: 371, Mismatches: 34, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
342 257 0.69
343 3 0.01
346 1 0.00
347 1 0.00
348 2 0.01
349 2 0.01
350 2 0.01
351 78 0.21
352 1 0.00
353 24 0.06
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (347 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCTATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAAAGACAAGATGATTGG
GCATTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACT
GAAGCAGATCCAAGATGATTTGTCACTATATTCTAGAGAAAAAATCGAAGAAACAGATTTGGCAT
CTACATATTCGACGAAGACCAG
Found at i:135005386 original size:562 final size:566
Alignment explanation
Indices: 135004656--135005854 Score: 1804
Period size: 562 Copynumber: 2.1 Consensus size: 566
135004646 CAAGGAGCAA
* *
135004656 ATCGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135004721 TCTCTGTATTGTGAGAAAAAAATCGAAGAAATAGGTTTGGCATCTCTATATTCGATGGAGAGCAG
66 TCTCTGTATTGTCAGAAAAAAATCGAAGAAATAGATTTGGCATCTCTATATTCGACGGAGAGCAG
* * *
135004786 ATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTCG
131 ATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATGATTGCG
*
135004851 AATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTG
196 AATTCTTGTGTTTAAAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTG
*
135004916 AAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGG
261 AAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAAATTTGG
* * *
135004981 CATCTTCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGATTGTTTTCACA
326 CATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGATTGTTTTCACA
* **
135005046 TCA-AAGCAA-AGACAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGT
391 T-AGAAG-AAGAG-CAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAAC
* * * *
135005109 AGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGATTTTACATATCTG-A-G-A-A
453 AGATCTGACCTTCAGGTGTTCACACTGAAGCAGATCAAAGATGATCTGACATATCTGTATGCAGA
* * * *
135005170 -CA-AATTGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAG
518 GAACAATCGAAGAAACAGATTTGGCATCTACATATTCGACGGAGACCAG
135005217 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* *
135005282 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCA
66 TCTCTGTATTGTCAGA-AAAAAATCGAAGAAATAGATTTGGCATCTCTATATTCGACGGAGAGCA
* *
135005347 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGG
130 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATGATTGC
* * * * *
135005412 GCATTCTTTTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATT
195 GAATTCTTGTGTTTAAAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACT
* * * *
135005477 GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTG
260 GAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAAATTTG
*
135005542 GCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCAC
325 GCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGATTGTTTTCAC
135005607 ATAGAAGAAGATGCAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAACA
390 ATAGAAGAAGA-GCAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAACA
* * *
135005672 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAG
454 GATCTGACCTTCAGGTGTTCACACTGAAGCAGATCAAAGATGATCTGACATATCTGTA-TG-CAG
* *
135005737 AGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
517 AGAACAATCGAAGAAACAGATTTGGCATCTACATATTCGACGGAGACCAG
* * * * * *
135005787 ATCGAAGACATAGCAGATCTAACCTT-TGGTTGTTTTCACATCAAAACAGATACAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
135005851 GCAT
63 GCAT
135005855 TCTTGTTTTT
Statistics
Matches: 574, Mismatches: 49, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
561 81 0.14
562 388 0.68
563 2 0.00
565 1 0.00
567 1 0.00
568 1 0.00
569 3 0.01
570 73 0.13
571 1 0.00
572 23 0.04
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (566 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAAAAAAATCGAAGAAATAGATTTGGCATCTCTATATTCGACGGAGAGCAG
ATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATGATTGCG
AATTCTTGTGTTTAAAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTG
AAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAAATTTGG
CATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGATTGTTTTCACA
TAGAAGAAGAGCAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAACAGA
TCTGACCTTCAGGTGTTCACACTGAAGCAGATCAAAGATGATCTGACATATCTGTATGCAGAGAA
CAATCGAAGAAACAGATTTGGCATCTACATATTCGACGGAGACCAG
Found at i:135005604 original size:220 final size:220
Alignment explanation
Indices: 135005217--135005991 Score: 1241
Period size: 220 Copynumber: 3.5 Consensus size: 220
135005207 CGGAGACCAG
135005217 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135005282 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135005347 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCGAAGCAGATACAAGATGATTTG
135005412 GCATTCTTTTGTTTAAAAGGAGCAA
196 GCATTCTTTTGTTTAAAAGGAGCAA
* *
135005437 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* *
135005502 TCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135005567 GATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATAGAAGAAGATGCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCGAAGCAGATACAAGATGATTTG
*
135005632 GCATTCTTGTGTTTACAAA-GAGCAA
196 GCATTCTTTTGTTTA-AAAGGAGCAA
* * *
135005657 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
135005722 TCTCTGTATTGTCAGAG-AACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135005786 GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCAAAACAGATACAAGATGATTTG
131 GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCGAAGCAGATACAAGATGATTTG
*
135005851 GCATTCTTGTT-TTTACAAGGAGCAA
196 GCATTCTT-TTGTTTAAAAGGAGCAA
* * *
135005876 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135005941 TCTGTTTATTGTCAGAGAATAAATTGAAGAAACAGATTTGGCATCTCCATA
66 TCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATA
135005992 ATAAATTGAA
Statistics
Matches: 509, Mismatches: 42, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
218 2 0.00
219 196 0.39
220 308 0.61
221 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (220 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCGAAGCAGATACAAGATGATTTG
GCATTCTTTTGTTTAAAAGGAGCAA
Found at i:135005963 original size:781 final size:780
Alignment explanation
Indices: 135004439--135011484 Score: 3713
Period size: 781 Copynumber: 9.1 Consensus size: 780
135004429 GGAGTAAATT
* *
135004439 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGATTTGGTATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * *
135004504 TTATATTGTCAGAGAACAAATCGAAGAAACAGATTTTGCATCCCCATATTCGATGGAGAGCAGAT
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
* *
135004569 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
* *
135004634 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* *
135004699 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAAAAAAATCGAAGAAATAGGTTTGGCAT
261 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAAAAAAATCGAAGAAACAGATTTGGCAT
* * * * *
135004764 CTCTATATTCGATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCG
326 CTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATAG
*
135004829 AAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAACAGATC
391 AAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGATC
*
135004894 TGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAA
456 TGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGAA
*
135004959 CAAATCGAAGAAACAAATTTGGCATCTTCATATTCGACGGAGAGCAGATCGAAGACATAGCAGAT
521 CAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGAT
* *
135005024 CTGACCTTTGATTGTTTTCACATCAAAGCAAAGACAAGATGATTTGGCATTCTTGTGTTTACAAG
586 CTAACCTTTGATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135005089 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGAT
651 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCCAACATGAT
*
135005154 TTTACATATCTGAGAACAAATTGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAGAT
716 TTGACATATCTGAGAACAAA-TGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAGAT
135005219 C
780 C
135005220 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * * *
135005285 CTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCAGAT
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
135005350 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
131 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
* *
135005415 TTCTTTTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAA
196 TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
135005480 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCA
261 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAACAGATTTGGCA
135005545 TCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATA
325 TCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATA
* * * *
135005610 GAAGAAGATGCAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAACAGAT
390 GAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGAT
135005675 CTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGA
455 CTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGA
*
135005740 AC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
520 ACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
* * * *
135005804 TCTAACCTTTGGTTGTTTTCACATCAAAACAGATACAAGATGATTTGGCATTCTTGTTTTTACAA
585 TCTAACCTTTGATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTACAA
*
135005869 GGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAACATGA
650 GGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCCAACATGA
*
135005934 TTTGACATCTGTTTATTGTCAGAGAATAAATTGAAGAAACAGATTTGGCATCTCCATAATAAATT
715 TTTGACA------TA---TC-----------TG-AG-AACA-A------A--T---GAATAAA-T
* *
135005999 GAAGAAACAGATTTGGCATCTCCATATTCGAGGGAGACCAGATC
745 --------AGATTTGGCATCTACATATTCGACGGAGACCAGATC
* * * * *
135006043 GAAGACATAGCAGATCTGACATTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTAGCAT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCAT
* * * * * * * *** * *
135006108 -TCT-TATGTTTACAAAGACCAAATCGAAGACATAACAGATGTGACCTTCAGGTGTTTAC-ACTG
64 CTCTATAT-TGT-CAGAGAACAAATCGAAG--A-AACAGATTTGGCATCCCCAT-ATT-CGACGG
* * ** * * ** * * * * *
135006170 A-AGCAGATCCAAG--AT----GATTTGGCATCTCTATATTGTCAGA--GAA-CAAATCGAAGAA
122 AGAGCAGATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--
* * ** * * * * * *
135006225 ACAGATTTGGCA-TCTCCAT-ATTCAATGGAGGGCAGATCGAAGGCATAGCAGATCTGACCTT-T
185 A-TGATTGGGCATTCT-TGTGTTTAAAAGGA--GCAAATCGAAGACATAGCAGATCTGACCTTCA
* * * * * * * **
135006287 GTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT-TCTTGTGTTTTCAAGGAGCAAAT
246 G-GTGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCATCTC-TGTATTGT-GAGAAAAAAAT
* * * *
135006351 CGAAGACATAGCAGATTT-G-ACCTTCAGGTGTTTAC-ACTGAA-A-CAGATCTAAG--AT-G-A
306 CGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGAC-GAAGAGCAGATCGAAGACATAGCA
** ** * * * * * * * * * *
135006407 TTTGGCATCTCT-G-TATTGT--CAGAGAA-AAAATCGAAGAAATAGA-TTCGGTATCTCCATAT
363 GATCTCACCTTTGGTTGTTTTCACATAGAAGAAGATCCAAG--AT-GATTTC-GAAT-T-CTTGT
** ** * * * * * *
135006466 -TCAACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTT-TGGATGTTTGCA-TAACGAAGCA
422 GTTTACAAAGAGAAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACACT---GAAGCA
* ** * * *
135006528 GATTC-AAGATGATTTGGCAT-TCT-T-TTGTTTACA-ATGGGCAAATTGAAGACATAGCAGATC
483 GA-TCAAAGATGATCTGGCATCTCTGTATTG--T-CAGA-GAACAAATCGAAGA-A-A-CAAATT
* * * * * * ** *** * *
135006588 T-G-ACCTTCAGGTGTTTAC-ACTGA-AGTAGATCCAAG--AT-G-ATTTGGCATCTCTGCATTG
540 TGGCATCTCCA--T-ATT-CGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTG-ATTG
* ** * * * * ** * *
135006645 ---TCAGAGAAAAAATCGAAGA-AACA-GATTTGGCATCTCCATAT-TCGAC-GGAGAGCAGATC
600 TTTTCACA-TCAAAA-CAAAGACAAGATGATTTGGCAT-T-CTTGTGTTTACAAG-GAGCAAATC
** * * * * * *
135006703 GAAGGTATAGCAAATCTGACCTT-TGGATGTTTTCACAAC-GAAGCA-AACTCAAGATGATTTGG
660 GAAGACATAGCAGATCTGACCTTCAGG-TG--TTCAC-ACTGAAGTAGATC-CAACATGATTTGA
* *
135006765 CAT-TCT---------TG--T---T---TTT---A--T--A-A---G--GG-GA--AAATT
720 CATATCTGAGAACAAATGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAGATC
* * * * *
135006792 TAAGACATAGCAGATTTGACCTTCAGGTTTTTACACTGAAGCAGATCCAGGATGATTTGGTATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135006857 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGAT
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
* * * *
135006922 CAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
* * *
135006987 TTCTTGTGTTTACATGGAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* * * * *
135007052 GCAGATCCAAGATGATTTGGCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCA
261 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAACAGATTTGGCA
* * * * * * *
135007116 TCTCAATATTCGACGAAGAGTAGATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATC
325 TCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATA
* * * * *
135007181 GAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGAT
390 GAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGAT
* * * * * *
135007246 CTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATTTGACATCTCTTTATTGTCAGAGA
455 CTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGA
* * * * *
135007311 ATAAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
520 ACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
* * * ** *
135007376 TCTGACCTTTAGA-TGTTTTCACATCGAAGCAAATCCAAGATGATTTGGCATTCTTATGTTTACG
585 TCTAACCTTT-GATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTAC-
* * * * *
135007440 AA-GACCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGAT
648 AAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCCAACAT
* * * * * *
135007504 GATTTGGCATCTCTGTATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAA
713 GATTT-G-A---C---A-TATCTGAGAACAAAT-GAATAAATAGATTTGGCATCTACATATTCGA
* *
135007569 TGGAGAGCAGATC
768 CGGAGACCAGATC
* *
135007582 GAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
1 GAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA
* * * * * * *** *
135007646 T-TTTGTGTT-TACA-AGGAGCAAATCGAAGACATATTAGATTTGACCAT-CAGGTGTTTAC-AC
63 TCTCTATATTGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTG-GCATCCCCAT-ATT-CGAC
* * * * * * * * * **
135007706 TGA-AGCAGATCCAAGATGATTTG--GCATCT--CC----G-TATTGTCAGA--GAA-AAAATTG
120 GGAGAGCAGATCGAAGA-CA-TAGCAG-ATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCC
* * ** * ** * * * * *
135007758 AAGAAACAGATTTGGCA-TCTCCATATTCGACAGAGAACAGATCGAAGGCATAGCAAATCTGACC
182 AAG--A-TGATTGGGCATTCT-TGTGTTTAAAAG-GAGCAAATCGAAGACATAGCAGATCTGACC
* * * * * **
135007822 TT-TGGTTGTTTTCACAAC-GAAGCAGA-CTCAAGATGATTTGGCAT-TCTTGTGTTTATAAGGG
242 TTCAGG-TG-TTT-AC-ACTGAAGCATATC-CAAGATGATTTGGCATCTC-TGT-ATTGTGAGAA
** * * * *
135007883 GCAAATTGAAGACATAGCAGATCTGAGC-T-T-CAGGTGTTTAC-ACTG-A-AGCAGATCCAAG-
300 AAAAATCGAAGA-A-A-CAGATTTG-GCATCTCCA--T-ATT-CGAC-GAAGAGCAGATCGAAGA
** ** * * * * * * *
135007941 -AT-G-ATTTGGCATCTCT--TTATTGT--CAGAGAACAA-ATCGAACAA-ACAGATTT-GACAC
356 CATAGCAGATCTCACCTTTGGTTGTTTTCACATAGAAGAAGATC---CAAGA-TGATTTCGA-A-
* * ** * * * * * * *
135007996 TTCCATAT-TCGACAGAGAGCAGATCGAAGGCATAGCAGATCTGACCTT-TGGATGTTTTCACAT
415 TT-CTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T
* * * * * *
135008059 CGAAGTAGATCCAAGATGATTTGGCAT-TCTTGTATT-TACA-AGGAGCAAATCAAAGACATAGT
477 -GAAGCAGATCAAAGATGATCTGGCATCTC-TGTATTGT-CAGA-GAACAAATCGAAGA-A-A-C
* * * * * * * * ** *** * *
135008121 AGATTT-G-ACCTTCAGGTGTTTGCACTGA-AGCGGATCTAAG--AT-G-ATTTGGCATCTTCG-
535 AAATTTGGCATCTCCA--TATTCG-ACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTGA
* * * ** *** * * *
135008178 -TATTCTCAGAGAGT-GGATTGAAGA-AACA-GATTTGGCA-TCTCCGT-ATT-C-----G---A
597 TTGTTTTC--ACA-TCAAAACAAAGACAAGATGATTTGGCATTCT-TGTGTTTACAAGGAGCAAA
* * * **
135008228 -CG--G--AGAGCAAATCTGACCTT-TGGATGTTTTCAC--------AT-C-A-A--A---G-CA
658 TCGAAGACATAGCAGATCTGACCTTCAGG-TGTTCACACTGAAGTAGATCCAACATGATTTGACA
* * * *** * *
135008270 GATC----AA-AAATG-AT--TTAGAATT--C-T-TGTGT-TTAC-AAGGAGTA--A-ATT
722 TATCTGAGAACAAATGAATAAATAGATTTGGCATCTACATATT-CGACGGAG-ACCAGATC
* * *
135008314 GAAGACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAAGATGATTTGGTATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * *
135008379 CTATATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGAT
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
* *
135008444 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
* * * *
135008509 TACTTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* *
135008574 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCC
261 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAG-AAAAAAATCGAAGAAACAGATTTGGCA
* * * * * *
135008639 TCTCTATATTCGGCGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATC
325 TCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATA
* * * *
135008704 GAAGAAGATCCAAGATGATTTTGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGAT
390 GAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGAT
* * *
135008769 TTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCATCTCTGTATTGTCAGAGA
455 CTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGA
* *
135008834 ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGA
520 ACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
* * * * * * * ** *
135008899 TATGACATTTGAATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCATTCTTGTGTTTAGAA
585 TCTAACCTTTGATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTACAA
* * * * * *
135008963 GGAGAAAATCGAAGACATAGCAGATCTGACCCTT-AGGTGTTTACACTAAAGCAGATCTAAGATG
650 GGAGCAAATCGAAGACATAGCAGATCTGA-CCTTCAGGTGTTCACACTGAAGTAGATCCAACATG
* * * * * *
135009027 ATTTTATATATCTGAGAACAAATTGGATAAATAGATTTGGCATCTCCATATTCGACAGAGAGCAG
714 ATTTGACATATCTGAGAACAAA-TGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAG
135009092 ATC
778 ATC
*
135009095 GAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGAT-CAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135009159 CTATATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAATT-GACGGAGAGCAGA
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCAT-ATTCGACGGAGAGCAGA
* * * * * *
135009223 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCATAACGAAGCAGATTCAAGATGATTTGGC
130 TCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGC
* *
135009288 ATTCTTGTGTTTACAAGG-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
195 ATTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
* ** * * * *
135009352 AGCAAATCCAAGATGATTCAGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTCGC
260 AGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAACAGATTTGGC
* * * * *
135009417 ATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
324 ATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACAT
* * * * * * * *
135009482 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAGGACATAGCAGA
389 AGAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGA
* * * * * *
135009547 TTTGACCTTCAGGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATCTCTGTATTATTAGAG
454 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAG
* ** * * *
135009612 AGCGGA-CTGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCAAAGACATAGCA
519 AACAAATC-GAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
* * * * *
135009676 GATCTGACCTTTGGA-TGTTTTCACATCGAAGC-AGGTCCAAGATGATTTGGCATTCTTGTGTTT
583 GATCTAACCTTT-GATTGTTTTCACATCAAAACAAAG-ACAAGATGATTTGGCATTCTTGTGTTT
* * * * *
135009739 ACATGGAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAG
646 ACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCCAAC
* * * * *
135009804 ATGATTTGGCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCT-CAATATT
711 ATGATTT-G-A---C-ATA-T-CT-GAGAACAAAT-GAATAAATAGATTTGGCATCTAC-ATATT
* ** *
135009867 CGACGAAGAGTAGATT
765 CGACGGAGACCAGATC
* * * * *
135009883 GAAGACAAAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCGAAGATGATTTGGAA
1 GAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA
* * ** * * * * *** * * *
135009947 T-TCT-TGTGTTTACA-AGGAGTAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT-TACGC
63 TCTCTATAT-TGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCCCCATATTCGACGG
* * ** * * * * * **
135010008 TGATGTAGATCCTAGATCATTTG--GCATCT---C--T-G-TATTGTCAGA--GAA-CAAATTGA
122 AGA-GCAGATCGAAGA-CA-TAGCAG-ATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCA
* ** * ** ** *
135010061 AGAAATAGATTTGGCA-TCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCT
183 AG--AT-GATTGGGCATTCT-TGTGTTTAAAAG-GAGCAAATCGAAGACATAGCAGATCTGACCT
* * * * * * * * * * *
135010125 T-TGGATATTTTCACATCGAAGCAGATCCAAGATGATTTAGAAT-TCT-TCTTTTTACAAGGAGT
243 TCAGG-TGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAA--A-A
* * * * * * * *
135010187 AAATTGAAGACATAGTAGATCT-G-ACCTTCAGGTGTTTAC-ACTAA-AGCAGATCCAAG--AT-
302 AAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGAAGAGCAGATCGAAGACATA
** ** * * * * * * * * * *
135010245 G-ATTTGGCATCTCT-G-TATTGT--CAGAGAA-AAAATCAAAGAAACAGATTTGGCATCTCCAT
360 GCAGATCTCACCTTTGGTTGTTTTCACATAGAAGAAGATCCAAG--A-TGATTTCGAAT-T-C-T
** ** * * * * * * *
135010304 T-T-TCGACGGAGAGCAGATTGAAGACATAGCAAATCTGACCTT-TGGTTGTTTTCACATCGAAG
419 TGTGTTTACAAAGAGAAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T-GAAG
* * *
135010366 CAGATCCAAGATGAT-TGGCAT-TCT-T-TTGTTTACA-ACGAGCAAATCGAAGACATAGCAGAT
481 CAGATCAAAGATGATCTGGCATCTCTGTATTG--T-CAGA-GAACAAATCGAAGA-A-A-CAAAT
* * * * * * * * * *
135010426 CT-G-ACCTTCAGGTGTT-TACGTTGA-AGCATATCCAAGATGATTTG--GCATCT---CTGT-A
539 TTGGCATCTCCA--TATTCGACG--GAGAGCAGATCGAAGA-CA-TAGCAG-ATCTAACCTTTGA
*** * * * * * * ** *
135010481 TTG-TGAGAGA-AAAAATCGAAGA-AACA-GATTTGGCATCTCCAT-AGTCGACGAA-GAGCAGA
597 TTGTTTTCACATCAAAA-CAAAGACAAGATGATTTGGCAT-T-CTTGTGTTTAC-AAGGAGCAAA
* *
135010540 TC-AAGACAAAGCAGATCTGACCTT-TGGATGTTTTCACA-TCGAAGTAGATCC-A-A-GA--TG
658 TCGAAGACATAGCAGATCTGACCTTCAGG-TG--TTCACACT-GAAGTAGATCCAACATGATTTG
* * *
135010597 --AT-T-T-AG----AAT---T--CT---TGT-G--T-T---TA--CGA-GGAGTA--A-ATT
719 ACATATCTGAGAACAAATGAATAAATAGATTTGGCATCTACATATTCGACGGAG-ACCAGATC
*
135010630 GAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * * *
135010695 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGGGTAGAT
66 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
* * ** *
135010760 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAA
131 CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
* * *
135010825 TTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGATCTGACCATCAGGTGTTTACACTGAA
196 TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* * * *
135010890 GCAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCA
261 GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAACAGATTTGGCA
* * * * * *
135010955 TCTCCATTTTCGACGGAGAGCAGATCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATC
325 TCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATA
* ** * * * * *
135011020 GAAGCAGATCCAAGATGATTAGGCATTCTTTTGTTTACAAGGAGCAAATCGAAGACATAGCAGAT
390 GAAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGAT
* * * * * * * * *
135011085 CTGA-CATCAGGTGTTTACATTAAAGCATATCTAAGATGATTTGGCATCACTATATTGTGAGAGA
455 CTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGA
* * *
135011149 AAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGA
520 ACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
* * * * *
135011214 TCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGCATTCTTGTGTTTACAA
585 TCTAACCTTTGATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTACAA
** * * ** * *
135011279 CTAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCTT-ACACTGAAGCCGATTCAAGATG
650 GGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTG-TTCACACTGAAGTAGATCCAACATG
* * * * *
135011343 ATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
714 ATTT-G-A---C---A-TATCTGAGAACAAAT-GAATAAATAGATTTGGCATCTACATATTCGAC
*
135011408 GGAGAGCAGATC
769 GGAGACCAGATC
* * * * *
135011420 GAAGACATAGCAGATCTGACCTT-TGAATGTTTTCACATCGAAGAAGATCCAAGATGCTTTGGCA
1 GAAGACATAGCAGATCTGACCTTCAG-GTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA
135011484 T
63 T
135011485 TCTTATGTTT
Statistics
Matches: 4748, Mismatches: 939, Indels: 1145
0.69 0.14 0.17
Matches are distributed among these distances:
726 5 0.00
727 23 0.00
728 59 0.01
729 7 0.00
730 44 0.01
731 104 0.02
732 65 0.01
733 82 0.02
734 61 0.01
735 9 0.00
736 10 0.00
737 10 0.00
739 5 0.00
740 6 0.00
741 24 0.01
742 73 0.02
743 47 0.01
744 72 0.02
745 116 0.02
746 120 0.03
747 243 0.05
748 183 0.04
749 120 0.03
750 43 0.01
751 34 0.01
752 16 0.00
753 7 0.00
754 2 0.00
755 2 0.00
756 5 0.00
757 2 0.00
758 5 0.00
759 1 0.00
760 1 0.00
761 3 0.00
762 2 0.00
763 2 0.00
764 1 0.00
765 11 0.00
766 3 0.00
767 3 0.00
769 5 0.00
770 3 0.00
771 4 0.00
772 2 0.00
773 3 0.00
774 31 0.01
775 1 0.00
776 3 0.00
777 3 0.00
778 10 0.00
779 384 0.08
780 231 0.05
781 518 0.11
782 213 0.04
784 1 0.00
785 17 0.00
786 18 0.00
787 37 0.01
788 146 0.03
789 128 0.03
790 245 0.05
791 149 0.03
792 162 0.03
793 34 0.01
794 72 0.02
795 76 0.02
796 21 0.00
797 3 0.00
801 2 0.00
802 2 0.00
803 4 0.00
804 1 0.00
805 1 0.00
810 1 0.00
811 1 0.00
814 6 0.00
815 1 0.00
816 2 0.00
819 15 0.00
820 10 0.00
821 15 0.00
822 40 0.01
823 164 0.03
824 65 0.01
825 124 0.03
826 48 0.01
827 13 0.00
828 41 0.01
829 29 0.01
830 11 0.00
831 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (780 bp):
GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGAT
CGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGGGCA
TTCTTGTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
GCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAAAAAAATCGAAGAAACAGATTTGGCAT
CTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTCACCTTTGGTTGTTTTCACATAG
AAGAAGATCCAAGATGATTTCGAATTCTTGTGTTTACAAAGAGAAAATCGAAGACATAACAGATC
TGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAGAGAA
CAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGAT
CTAACCTTTGATTGTTTTCACATCAAAACAAAGACAAGATGATTTGGCATTCTTGTGTTTACAAG
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCCAACATGAT
TTGACATATCTGAGAACAAATGAATAAATAGATTTGGCATCTACATATTCGACGGAGACCAGATC
Found at i:135005995 original size:33 final size:33
Alignment explanation
Indices: 135005958--135006024 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
135005948 ATTGTCAGAG
135005958 AATAAATTGAAGAAACAGATTTGGCATCTCCAT
1 AATAAATTGAAGAAACAGATTTGGCATCTCCAT
135005991 AATAAATTGAAGAAACAGATTTGGCATCTCCAT
1 AATAAATTGAAGAAACAGATTTGGCATCTCCAT
135006024 A
1 A
135006025 TTCGAGGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATAAATTGAAGAAACAGATTTGGCATCTCCAT
Found at i:135006217 original size:87 final size:89
Alignment explanation
Indices: 135006008--135006223 Score: 242
Period size: 89 Copynumber: 2.4 Consensus size: 89
135005998 TGAAGAAACA
* *** * * *
135006008 GATTTGGCATCTCCATATTCGAGGGAGACCAGATCGAAGACATAGCAGATCTGACATTTAGATGT
1 GATTTGGCATCTCTATATT-GTCAGAGACCAAATCGAAGACATAACAGATCTGACATTCAGATGT
*
135006073 TTTCACATCGAAGCAGATCCAAGAT
65 TTACACATCGAAGCAGATCCAAGAT
* * * * * *
135006098 GATTTAGCAT-TCT-TATGTTTACAAAGACCAAATCGAAGACATAACAGATGTGACCTTCAGGTG
1 GATTTGGCATCTCTATAT-TGT-CAGAGACCAAATCGAAGACATAACAGATCTGACATTCAGATG
135006161 TTTACAC-T-GAAGCAGATCCAAGAT
64 TTTACACATCGAAGCAGATCCAAGAT
*
135006185 GATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGA
1 GATTTGGCATCTCTATATTGTCAGAGACCAAATCGAAGA
135006224 AACAGATTTG
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
87 41 0.39
88 9 0.09
89 45 0.43
90 9 0.09
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (89 bp):
GATTTGGCATCTCTATATTGTCAGAGACCAAATCGAAGACATAACAGATCTGACATTCAGATGTT
TACACATCGAAGCAGATCCAAGAT
Found at i:135006381 original size:220 final size:220
Alignment explanation
Indices: 135005994--135009156 Score: 4442
Period size: 220 Copynumber: 14.5 Consensus size: 220
135005984 TCTCCATAAT
* * *
135005994 AAATTGAAGAAACAGATTTGGCATCTCCATATTCGAGGGAGACCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * * * *
135006059 TGACATTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTAGCATTCTTATGTTTACAAAG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * *
135006124 ACCAAATCGAAGACATAACAGATGTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
*
135006189 TGGCATCTCTATATTGTCAGAGAAC
196 TGGCATCTCTGTATTGTCAGAGAAC
* * * *
135006214 AAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGGGCAGATCGAAGGCATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* *
135006279 TGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTTCAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * *
135006344 AGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACAGATCTAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
*
135006409 TGGCATCTCTGTATTGTCAGAGAAA
196 TGGCATCTCTGTATTGTCAGAGAAC
* * * * *
135006434 AAATCGAAGAAATAGATTCGGTATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * * * *
135006499 TGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGCATTCTTTTGTTTACAATG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAA-G
* *
135006564 G-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGAT
130 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135006628 TTGGCATCTCTGCATTGTCAGAGAAA
195 TTGGCATCTCTGTATTGTCAGAGAAC
** *
135006654 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGGTATAGCAAATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * * *
135006719 TGACCTTTGGATGTTTTCACAACGAAGCA-AACTCAAGATGATTTGGCATTCTTGTTTTTATAAG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAG
* * ** * * *
135006783 GGGAAAATTTAAGACATAGCAGATTTGACCTTCAGGTTTTTACACTGAAGCAGATCCAGGATGAT
130 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135006848 TTGGTATCTCTATATTGTCAGAGAAC
195 TTGGCATCTCTGTATTGTCAGAGAAC
* *
135006874 AAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCAAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* *
135006939 TGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGGCATTCTTGTGTTTACATGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
*
135007004 AGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* *
135007069 TGGCATCTCTGTAGTGTTAGAGAAC
196 TGGCATCTCTGTATTGTCAGAGAAC
* * * * * *
135007094 AAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTAGATTGAAGACAAAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
*
135007158 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* *
135007223 AGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* * *
135007288 TGACATCTCTTTATTGTCAGAGAAT
196 TGGCATCTCTGTATTGTCAGAGAAC
* * *
135007313 AAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * *
135007378 TGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTGGCATTCTTATGTTTACGAA-
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC-AAG
* *
135007442 GACCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
130 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135007507 TTGGCATCTCTGTATTATCAGAGAAC
195 TTGGCATCTCTGTATTGTCAGAGAAC
* * *
135007533 AAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
135007598 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATT-TTGTGTTTACAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
** * *
135007662 AGCAAATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* *
135007727 TGGCATCTCCGTATTGTCAGAGAAA
196 TGGCATCTCTGTATTGTCAGAGAAC
* * * * *
135007752 AAATTGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAACAGATCGAAGGCATAGCAAATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * *
135007817 TGACCTTTGGTTGTTTTCACAACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTATAAG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135007881 GGGCAAATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
130 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135007946 TTGGCATCTCTTTATTGTCAGAGAAC
195 TTGGCATCTCTGTATTGTCAGAGAAC
* * * *
135007972 AAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGCAGATCGAAGGCATAGCAGAT
1 AAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGAT
* *
135008036 CTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATTCTTGTATTTACAAG
65 CTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * * * * *
135008101 GAGCAAATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGAT
130 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* **
135008166 TTGGCATCT-TCGTATTCTCAGAGAGT
195 TTGGCATCTCT-GTATTGTCAGAGAAC
** * *
135008192 GGATTGAAGAAACAGATTTGGCATCTCCGTATTCGAC-----G--GA--G-AG-C--A--A-ATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * * * *
135008241 TGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAAATGATTTAGAATTCTTGTGTTTACAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * * *
135008306 AGTAAATTGAAGACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* * *
135008371 TGGTATCTCTATATTGTCAAAGAAC
196 TGGCATCTCTGTATTGTCAGAGAAC
*
135008396 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
*
135008461 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATACTTGTGTTTACAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * *
135008526 AGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATT
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
* * *
135008591 TGGCATCTCTGTATTGTGAGAAAAA
196 TGGCATCTCTGTATTGTCAGAGAAC
* * * *
135008616 AAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * * *
135008681 TGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTTGCATTCTTGTGTTTACAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * **
135008746 AGCAAATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAAC
131 AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
135008811 TGGCATCTCTGTATTGTCAGAGAAC
196 TGGCATCTCTGTATTGTCAGAGAAC
* *
135008836 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGATA
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * *
135008901 TGACATTTGAATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCATTCTTGTGTTTAGAAGG
66 TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* * *
135008965 AGAAAATCGAAGACATAGCAGATCTGACCCTT-AGGTGTTTACACTAAAGCAGATCTAAGATGA-
131 AGCAAATCGAAGACATAGCAGATCTGA-CCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135009028 -T----T-T-TATA-TATCTGAGAAC
195 TTGGCATCTCTGTATTGTCAGAGAAC
* * * * *
135009046 AAATTGGATAAATAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATC
1 AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
* * *
135009111 TGGCCTTCAGG-TGTTTACAC-T-GAAGCAGAT-CAAGATGATTTGGCAT
66 TGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
135009157 CTCTATATTG
Statistics
Matches: 2622, Mismatches: 288, Indels: 78
0.88 0.10 0.03
Matches are distributed among these distances:
204 166 0.06
205 2 0.00
207 12 0.00
208 13 0.00
209 3 0.00
210 82 0.03
211 7 0.00
212 1 0.00
213 4 0.00
214 2 0.00
215 2 0.00
217 2 0.00
218 3 0.00
219 471 0.18
220 1845 0.70
221 7 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATC
TGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATT
TGGCATCTCTGTATTGTCAGAGAAC
Found at i:135006441 original size:87 final size:89
Alignment explanation
Indices: 135006260--135006448 Score: 208
Period size: 87 Copynumber: 2.1 Consensus size: 89
135006250 TGGAGGGCAG
* * * *
135006260 ATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGTATGTTTACACATCGAAACAGATCCAAGATGATTTGG
* * **
135006325 CATTCTTGTGTTTTCAAGGAGCAA
66 CATTCTTGTATTGTCAAGGAAAAA
* * *
135006349 ATCGAAGACATAGCAGATTTGACCTTCAG-GTGTTTACAC-T-GAAACAGATCTAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGTATGTTTACACATCGAAACAGATCCAAGATGATTTG
135006411 GCA-TCTCTGTATTGTC-AGAGAAAAA
65 GCATTCT-TGTATTGTCAAG-GAAAAA
*
135006436 ATCGAAGAAATAG
1 ATCGAAGACATAG
135006449 ATTCGGTATC
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
86 5 0.06
87 46 0.54
88 1 0.01
89 32 0.38
90 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGTATGTTTACACATCGAAACAGATCCAAGATGATTTGG
CATTCTTGTATTGTCAAGGAAAAA
Found at i:135007043 original size:89 final size:87
Alignment explanation
Indices: 135006914--135007074 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135006904 ATTTGACGGA
* * * *
135006914 GAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135006979 ATTTGGCATTCTTGTGTTTACATG
64 ATTTGGCATTCTTGTGTTTACATG
* *
135007003 GAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135007067 TTTGGCAT
65 TTTGGCAT
135007075 CTCTGTAGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTCTTGTGTTTACATG
Found at i:135007097 original size:87 final size:88
Alignment explanation
Indices: 135006920--135007103 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 88
135006910 CGGAGAGCAG
* * *
135006920 ATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGG
1 ATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
*
135006985 CATTCTTGTGTTTACATGGAGCAA
66 CATTCTTGTGTTTACA-GGAACAA
* *
135007009 ATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
1 ATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTG
*
135007071 GCA-TCTCTGTAGTGTTAGA-GAACAA
65 GCATTCT-TGT-GT-TTACAGGAACAA
135007096 ATCAAAGA
1 ATCAAAGA
135007104 AACAGATTTG
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
86 3 0.04
87 39 0.47
88 3 0.04
89 36 0.43
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (88 bp):
ATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTGTGTTTACAGGAACAA
Done.