Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 438 of 770
Found at i:135007536 original size:87 final size:89
Alignment explanation
Indices: 135007359--135007538 Score: 235
Period size: 89 Copynumber: 2.0 Consensus size: 89
135007349 CGGAGAGCAG
* * *
135007359 ATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
* *
135007424 CATTCTTATGTTTACGAAGACCAA
66 CATTCTTATGTTCACGAAGAACAA
* *
135007448 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
135007511 CATCTCTGTAT-TATCA-G-AGAACAA
66 CAT-TCT-TATGT-TCACGAAGAACAA
135007535 ATCG
1 ATCG
135007539 GAGAAACAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
87 35 0.43
88 6 0.07
89 40 0.49
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
CATTCTTATGTTCACGAAGAACAA
Found at i:135007701 original size:88 final size:86
Alignment explanation
Indices: 135007573--135007732 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 86
135007563 ATTCAATGGA
* ** *
135007573 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135007638 ATTTGGCATTTTGTGTTTACAAG
64 ATTTGGCATTTTGTGTTTACAAG
** *
135007661 GAGCAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTACACTGAAGCAGATCCAAGATGA
135007725 TTTGGCAT
65 TTTGGCAT
135007733 CTCCGTATTG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
86 26 0.41
87 1 0.02
88 34 0.53
89 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (86 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTTTGTGTTTACAAG
Found at i:135007975 original size:87 final size:89
Alignment explanation
Indices: 135007766--135007979 Score: 199
Period size: 87 Copynumber: 2.4 Consensus size: 89
135007756 TGAAGAAACA
** * * * *
135007766 GATTTGGCATCTCCATATTCGACAGAGAACAGATCGAAGGCATAGCAAATCTGACCTTTGGTTGT
1 GATTTGGCATCTCTTTATT-GTCAGAGAACAAATCGAAGACATAGCAAATCTGACCTTAGGTTGT
135007831 TTTCACAACGAAGCAGACTCAAGAT
65 TTTCACAACGAAGCAGACTCAAGAT
* * * ** * * *
135007856 GATTTGGCAT-TCTTGTGTTTATAAG-GGGCAAATTGAAGACATAGCAGATCTGAGCTTCAGG-T
1 GATTTGGCATCTCTT-T-ATTGTCAGAGAACAAATCGAAGACATAGCAAATCTGACCTT-AGGTT
135007918 G-TTT-AC-ACTGAAGCAGA-TCCAAGAT
63 GTTTTCACAAC-GAAGCAGACT-CAAGAT
135007943 GATTTGGCATCTCTTTATTGTCAGAGAACAAATCGAA
1 GATTTGGCATCTCTTTATTGTCAGAGAACAAATCGAA
135007980 CAAACAGATT
Statistics
Matches: 97, Mismatches: 20, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
86 8 0.08
87 36 0.37
88 7 0.07
89 29 0.30
90 15 0.15
91 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (89 bp):
GATTTGGCATCTCTTTATTGTCAGAGAACAAATCGAAGACATAGCAAATCTGACCTTAGGTTGTT
TTCACAACGAAGCAGACTCAAGAT
Found at i:135008565 original size:89 final size:87
Alignment explanation
Indices: 135008436--135008596 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135008426 ATTCGACGAA
* * * *
135008436 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135008501 ATTTGGCATACTTGTGTTTACAAG
64 ATTTGGCATACTTGTGTTTACAAG
* *
135008525 GAGCAAATCAAAGACATAGTAGATCTGACCTTCAGG-TGTTTACACTGAAGCATATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135008589 TTTGGCAT
65 TTTGGCAT
135008597 CTCTGTATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATACTTGTGTTTACAAG
Found at i:135008620 original size:87 final size:88
Alignment explanation
Indices: 135008446--135008605 Score: 202
Period size: 87 Copynumber: 1.8 Consensus size: 88
135008436 GAGCAGATCG
* *
135008446 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATA
1 AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
* **
135008511 CTTGTGTTTACAAGGAGCAAATCA
66 CTTGTATTTACAA-GAAAAAATCA
* *
135008535 AAGACATAGTAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCAT
1 AAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCAT
135008597 -CTCTGTATT
65 ACT-TGTATT
135008606 GTGAGAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
86 2 0.03
87 30 0.47
88 1 0.02
89 29 0.45
90 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (88 bp):
AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
CTTGTATTTACAAGAAAAAATCA
Found at i:135009234 original size:130 final size:126
Alignment explanation
Indices: 135008970--135009290 Score: 361
Period size: 130 Copynumber: 2.5 Consensus size: 126
135008960 GAAGGAGAAA
*
135008970 ATCGAAGACATAGCAGATCTGACCCTTAGGTGTTTACACTAAAGCAGATCTAAGATGA--T----
1 ATCGAAGACATAGCAGATCTGA-CCTTAGGTGTTTACACTGAAGCAGATC-AAGATGATTTGGCA
* * * * * *
135009029 TTTATATATCTGAGAACAAATTGGATAAATAGATTTGGCATCTCCATATTCGACAGAGAGCAG
64 TTTATATATCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAG
*
135009092 ATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCAAGATGATTTGGCAT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGTGTTTACACTGAAGCAGATCAAGATGATTTGGCAT
* *
135009157 CTCTATATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAATT-GACGGAGAGCA
65 -T-TATA-TATCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCAT-ATTCGACAGAGAGCA
135009221 G
126 G
* * *
135009222 ATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCA-TAACGAAGCAGATTCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTAGG-TGTTTACACT---GAAGCAGA-TCAAGATGATTTG
135009286 GCATT
61 GCATT
135009291 CTTGTGTTTA
Statistics
Matches: 169, Mismatches: 14, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
121 11 0.07
122 43 0.25
123 1 0.01
127 1 0.01
128 1 0.01
129 7 0.04
130 76 0.45
131 3 0.02
132 9 0.05
133 17 0.10
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (126 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGTGTTTACACTGAAGCAGATCAAGATGATTTGGCATT
TATATATCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAG
Found at i:135009658 original size:220 final size:220
Alignment explanation
Indices: 135009086--135011911 Score: 4020
Period size: 220 Copynumber: 12.9 Consensus size: 220
135009076 ATTCGACAGA
* *
135009086 GAGCAGATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGAT-CAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135009150 TTGGCATCTCTATATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAATT-GACG
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCAT-ATTCGACG
* * * *
135009214 GAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCATAACGAAGCAGATTCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
135009279 TGATTTGGCATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* *
135009305 G-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAAATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
** * * * *
135009369 TCAGCATCTCTGTATTGTCAGAGA-ACAAATCAAAGAAACAGATTTCGCATCTCCATATTCAATG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
135009433 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
135009498 TGATTTGGCATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * *
135009524 GAGCAAATCGAGGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * ** * *
135009589 TTGGCATCTCTGTATTATTAGAGAGCGGACT-GAAGAAACAGATTTGGCATCTCCATATTTGACG
66 TTGGCATCTCTGTATTGTCAGAGA-CAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
* *
135009653 GAGAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
*
135009718 TGATTTGGCATTCTTGTGTTTACATG
195 TGATTTGGCATTCTTGTGTTTACAAG
*
135009744 GAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135009809 TTGGCATCTCTGTAGTGTTAGAGA-ACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
* * * * *
135009872 AAGAGTAGATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCGAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
*
135009937 TGATTTGGAATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * * * *
135009963 GAGTAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGATGTAGATCCTAGATCAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135010028 TTGGCATCTCTGTATTGTCAGAGA-ACAAATTGAAGAAATAGATTTGGCATCTCCATATTCGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
*
135010092 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATATTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * * *
135010157 TGATTTAGAATTCTTCTTTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * *
135010183 GAGTAAATTGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTAAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135010248 TTGGCATCTCTGTATTGTCAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCCATTTTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * *
135010313 AGAGCAGATTGAAGACATAGCAAATCTGACCTTTGGTTGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135010378 GA-TTGGCATTCTTTTGTTTACAAC
196 GATTTGGCATTCTTGTGTTTACAAG
** *
135010402 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGTTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135010467 TTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGA
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* *
135010532 AGAGCAGATC-AAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135010596 GATTTAGAATTCTTGTGTTTACGAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * *
135010621 GAGTAAATTGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135010686 TTGGCATCTCTGTATTGTCAGAGA-ACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
* * *
135010750 GAGGGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* *
135010815 TGATTTAGAATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* *
135010841 GAGTAAATCGAAGACATAGCAGATCTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135010906 TTAGCATCTCTGTATTGTCAGAGA-ACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
*
135010970 GAGAGCAGATCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* *
135011035 TGATTAGGCATTCTTTTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * * *
135011061 GAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTAAAGCATATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135011125 TTGGCATCACTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * *
135011190 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135011255 GATTTGGCATTCTTGTGTTTACAAC
196 GATTTGGCATTCTTGTGTTTACAAG
* * * * * *
135011280 TAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCTTACACTGAAGCCGATTCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135011345 TTCGCATCTCTGTATTGTCAGAGA-ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
* *
135011409 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * *
135011474 TGCTTTGGCATTCTTATGTTTACAAA
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * *
135011500 GACCAAATGGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135011565 CTGGCATCTCTGTATTGGCAGAGA-ATAAATCGAAGAAACATATTTGGTATCTCCAT-TATCGAC
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGAC
* * * *
135011628 GGAGAGCAGATTGAAGACATAGTAGATATGACCTTTGGATGTTTTCACATCGAAGCAGA-ACAAG
129 GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG
135011692 ATGATTT-GCATTCTTGTGTTTACAAG
194 ATGATTTGGCATTCTTGTGTTTACAAG
* * * *
135011718 GAGTAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCTGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
** * * * *
135011783 TTTACATATC-----TG--AGA-AC-AAATTGAATAAATAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * * *
135011839 AGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
135011901 TGATTTGGCAT
195 TGATTTGGCAT
135011912 CTCTGTATTG
Statistics
Matches: 2341, Mismatches: 244, Indels: 54
0.89 0.09 0.02
Matches are distributed among these distances:
207 8 0.00
208 12 0.01
209 71 0.03
210 4 0.00
211 3 0.00
213 2 0.00
218 188 0.08
219 844 0.36
220 1206 0.52
221 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTGGCATTCTTGTGTTTACAAG
Found at i:135009784 original size:89 final size:87
Alignment explanation
Indices: 135009655--135009815 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135009645 ATTTGACGGA
* * * *
135009655 GAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135009720 ATTTGGCATTCTTGTGTTTACATG
64 ATTTGGCATTCTTGTGTTTACATG
* *
135009744 GAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135009808 TTTGGCAT
65 TTTGGCAT
135009816 CTCTGTAGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTCTTGTGTTTACATG
Found at i:135009838 original size:87 final size:88
Alignment explanation
Indices: 135009661--135009844 Score: 225
Period size: 87 Copynumber: 2.1 Consensus size: 88
135009651 CGGAGAGCAG
* * *
135009661 ATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGG
1 ATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
*
135009726 CATTCTTGTGTTTACATGGAGCAA
66 CATTCTTGTGTTTACA-GGAACAA
* *
135009750 ATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
1 ATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTG
*
135009812 GCA-TCTCTGTAGTGTTAGA-GAACAA
65 GCATTCT-TGT-GT-TTACAGGAACAA
135009837 ATCAAAGA
1 ATCAAAGA
135009845 AACAGATTTG
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
86 3 0.04
87 39 0.47
88 3 0.04
89 36 0.43
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (88 bp):
ATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTGTGTTTACAGGAACAA
Found at i:135009860 original size:439 final size:440
Alignment explanation
Indices: 135009086--135011911 Score: 4070
Period size: 439 Copynumber: 6.5 Consensus size: 440
135009076 ATTCGACAGA
* *
135009086 GAGCAGATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATC-AAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* *
135009150 TTGGCATCTCTATATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAATT-GACG
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCAT-ATTCGACG
* * * *
135009214 GAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCATAACGAAGCAGATTCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
135009279 TGATTTGGCATTCTTGTGTTTACAAGG-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
195 TGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
* **
135009343 TTACACTGAAGCAAATCCAAGATGATTCAGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAAC
* * *
135009408 AGATTTCGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
135009473 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135009524 GAGCAAATCGAGGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * ** * *
135009589 TTGGCATCTCTGTATTATTAGAGAGCGGACT-GAAGAAACAGATTTGGCATCTCCATATTTGACG
66 TTGGCATCTCTGTATTGTCAGAGA-CAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
* *
135009653 GAGAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * *
135009718 TGATTTGGCATTCTTGTGTTTACATGGAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGT
195 TGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
* *
135009783 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAAC
* * * * *
135009848 AGATTT-GCATCTCAATATTCGACGAAGAGTAGATTGAAGACAAAGCAGATCTGACCTTTGGATG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* *
135009912 TTTTCACATCGAAGCAGATCGAAGATGATTTGGAATTCTTGTGTTTACAAG
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * * * *
135009963 GAGTAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGATGTAGATCCT-AGATCA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAT-CTAAGATGA
* *
135010027 TTTGGCATCTCTGTATTGTCAGAGA-ACAAATTGAAGAAATAGATTTGGCATCTCCATATTCGAC
65 TTTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
*
135010091 GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATATTTTCACATCGAAGCAGATCCAAG
129 GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG
* * * * * *
135010156 ATGATTTAGAATTCTTCTTTTTACAAGGAGTAAATTGAAGACATAGTAGATCTGACCTTCAGGTG
194 ATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTG
* *
135010221 TTTACACTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCAAAGAAA
259 TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAA
* * * *
135010286 CAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATTGAAGACATAGCAAATCTGACCTTTGGTT
324 CAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGAT
* *
135010351 GTTTTCACATCGAAGCAGATCCAAGATGA-TTGGCATTCTTTTGTTTACAAC
389 GTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
** * *
135010402 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGTTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * * *
135010467 TTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGA
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* *
135010532 AGAGCAGATC-AAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * *
135010596 GATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGTAGATCTGACCTTCAGGTGTT
196 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
*
135010661 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
* * *
135010726 GATTTGGCATCTCCATATTTGACGGAGGGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * *
135010791 TTTCACTTCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAG
391 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135010841 GAGTAAATCGAAGACATAGCAGATCTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* *
135010906 TTAGCATCTCTGTATTGTCAGAGA-ACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACG
66 TTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
*
135010970 GAGAGCAGATCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * * *
135011035 TGATTAGGCATTCTTTTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGT
195 TGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGT
* * * * * * * * *
135011099 TTACATTAAAGCATATCTAAGATGATTTGGCATCACTATATTGTGAGAGAAAAAATCGAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAAC
* *
135011164 AGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* * *
135011229 TTTTCACATCAAAGCAGATACAAGATGATTTGGCATTCTTGTGTTTACAAC
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * * * *
135011280 TAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCTTACACTGAAGCCGAT-TCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCT-AAGATGA
*
135011344 TTTCGCATCTCTGTATTGTCAGAGA-ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
65 TTTGGCATCTCTGTATTGTCAGAGACA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
* *
135011408 GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAGATCCAAG
129 GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG
* * * * * *
135011473 ATGCTTTGGCATTCTTATGTTTACAAAGACCAAATGGAAGACATAACAGATCTGACCTTCAGGTG
194 ATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTG
* * * * *
135011538 TTTACACTGAAGCAGATCTAAGATGATCTGGCATCTCTGTATTGGCAGAGAATAAATCGAAGAAA
259 TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAA
* * * * *
135011603 CATATTTGGTATCTCCAT-TATCGACGGAGAGCAGATTGAAGACATAGTAGATATGACCTTTGGA
324 CAGATTTGGCATCTCCATAT-TCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA
*
135011667 TGTTTTCACATCGAAGCAGA-ACAAGATGATTT-GCATTCTTGTGTTTACAAG
388 TGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135011718 GAGTAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCTGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
** * * * *
135011783 TTTACATATC-----TG--AGA-AC-AAATTGAATAAATAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * * *
135011839 AGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
135011901 TGATTTGGCAT
195 TGATTTGGCAT
135011912 CTCTGTATTG
Statistics
Matches: 2157, Mismatches: 212, Indels: 49
0.89 0.09 0.02
Matches are distributed among these distances:
427 23 0.01
428 1 0.00
429 74 0.03
430 2 0.00
431 3 0.00
433 2 0.00
438 398 0.18
439 1236 0.57
440 418 0.19
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (440 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGACAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACA
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
Found at i:135010937 original size:87 final size:89
Alignment explanation
Indices: 135010758--135010941 Score: 227
Period size: 87 Copynumber: 2.1 Consensus size: 89
135010748 CGGAGGGTAG
** *
135010758 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAG
1 ATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
* **
135010823 AATTCTTGTGTTTACAAGGAGTAA
66 AATTCTTGTATTTACAAGGAACAA
135010847 ATCGAAGACATAGCAGATCTGACCATCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTA
1 ATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTA
*
135010909 GCA-TCTCTGTATTGT-C-AGAGAACAA
65 GAATTCT-TGTATT-TACAAG-GAACAA
135010934 ATCGAAGA
1 ATCGAAGA
135010942 AACAGATTTG
Statistics
Matches: 84, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
86 5 0.06
87 42 0.50
88 2 0.02
89 32 0.38
90 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
AATTCTTGTATTTACAAGGAACAA
Found at i:135011515 original size:659 final size:658
Alignment explanation
Indices: 135009086--135011911 Score: 4049
Period size: 659 Copynumber: 4.3 Consensus size: 658
135009076 ATTCGACAGA
* *
135009086 GAGCAGATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATC-AAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
*
135009150 TTGGCATCTCTATATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAATT-GACG
66 TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCAT-ATTCGACG
* * * * *
135009214 GAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCATAACGAAGCAGATTCAAGA
130 AAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGA
* * *
135009279 TGATTTGGCATTCTTGTGTTTACAAGGGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTT
194 TGATTTGGCATTCTTGTGTTTACAAGAGCAAATCGAAGACATAGCAGATCTGACCTTCAAGTGTT
* * *
135009344 TACACTGAAGCAAATCCAAGATGA-TTCAGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAAC
259 TACACTGAAGCAGATTCAAGATGATTTC-GCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
* * *
135009408 AGATTTCGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
323 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* * *
135009473 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAGGA
388 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAAGAGCAAATCGAAGA
* * *
135009538 CATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATCTCTGTA
453 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
* * * ** *
135009603 TTATTAGAGAGCGGA-CTGAAGAAACAGATTTGGCATCTCCATATTT-GACGGAGAGCAGATCAA
518 TTGTCAGAGAACAAATC-GAAGAAACAGATTTGGCATCTCCAT-TTTCGACGGAGAGCAGATCGA
*
135009666 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTGGCATTC
581 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
*
135009731 TTGTGTTTACATG
646 TTGTGTTTACAAG
* *
135009744 GAGCAAATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * * * *
135009809 TTGGCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGA
66 TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
* * * *
135009873 AGAGTAGATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCGAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135009938 GATTTGGAATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
195 GATTTGGCATTCTTGTGTTTACAA-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAAGTGTT
* * * * * * * * *
135010003 TACGCTGATGTAGATCCTAGATCATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAATA
259 TACACTGAAGCAGATTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
*
135010068 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATAT
324 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * * * * *
135010133 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTCTTTTTACAAGGAGTAAATTGAAGAC
389 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAAGAGCAAATCGAAGAC
* *
135010198 ATAGTAGATCTGACCTTCAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
454 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* * *
135010263 TGTCAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATTGAAGA
519 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGA
* * *
135010328 CATAGCAAATCTGACCTTTGGTTGTTTTCACATCGAAGCAGATCCAAGATGA-TTGGCATTCTTT
584 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
135010392 TGTTTACAAC
649 TGTTTACAAG
** * *
135010402 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGTTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * * *
135010467 TTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGA
66 TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
* *
135010532 AGAGCAGATC-AAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGAT
* * * * * * *
135010596 GATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGTAGATCTGACCTTCAGGTGTT
195 GATTTGGCATTCTTGTGTTTAC-AAGAGCAAATCGAAGACATAGCAGATCTGACCTTCAAGTGTT
* *
135010661 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
259 TACACTGAAGCAGATTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135010726 GATTTGGCATCTCCATATTTGACGGAGGGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
324 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * * * *
135010791 TTTCACTTCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATCGAAGAC
389 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAAGAGCAAATCGAAGAC
* *
135010856 ATAGCAGATCTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTAT
454 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
135010921 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGA
519 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGA
* * *
135010986 CATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTAGGCATTCTTT
584 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
135011051 TGTTTACAAG
649 TGTTTACAAG
* * * *
135011061 GAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTAAAGCATATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * *
135011125 TTGGCATCACTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
66 TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
* *
135011190 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135011255 GATTTGGCATTCTTGTGTTTACAACTAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCT
195 GATTTGGCATTCTTGTGTTTACAA-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAAGTGTT
*
135011320 TACACTGAAGCCGATTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
259 TACACTGAAGCAGATTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
*
135011385 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGT
324 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * *
135011450 TTTCACATCGAAGAAGATCCAAGATGCTTTGGCATTCTTATGTTTACAAAGACCAAATGGAAGAC
389 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAAGAGCAAATCGAAGAC
* * *
135011515 ATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATCTGGCATCTCTGTAT
454 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
* * * * * *
135011580 TGGCAGAGAATAAATCGAAGAAACATATTTGGTATCTCCATTATCGACGGAGAGCAGATTGAAGA
519 TGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGA
* * *
135011645 CATAGTAGATATGACCTTTGGATGTTTTCACATCGAAGCAGA-ACAAGATGATTT-GCATTCTTG
584 CATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTG
135011708 TGTTTACAAG
649 TGTTTACAAG
* * *
135011718 GAGTAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCTGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
* * * * * *
135011783 TT----T-AC-ATA---TCTGAGAACAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
* * * * * *
135011839 AGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGC-T-GAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGTGTTTTCACATCGAAGCAGATCCAAGAT
135011902 GATTTGGCAT
195 GATTTGGCAT
135011912 CTCTGTATTG
Statistics
Matches: 1973, Mismatches: 182, Indels: 37
0.90 0.08 0.02
Matches are distributed among these distances:
647 24 0.01
648 1 0.00
649 79 0.04
650 2 0.00
652 3 0.00
653 2 0.00
654 1 0.00
657 48 0.02
658 882 0.45
659 928 0.47
660 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (658 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGAT
TTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGA
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTGTTTTCACATCGAAGCAGATCCAAGATG
ATTTGGCATTCTTGTGTTTACAAGAGCAAATCGAAGACATAGCAGATCTGACCTTCAAGTGTTTA
CACTGAAGCAGATTCAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGA
TTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTT
TCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAAGAGCAAATCGAAGACAT
AGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTG
TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGACA
TAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTG
TTTACAAG
Found at i:135012244 original size:220 final size:220
Alignment explanation
Indices: 135011848--135015327 Score: 5107
Period size: 220 Copynumber: 15.9 Consensus size: 220
135011838 GAGAGTAGAA
* *
135011848 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * **
135011913 TCTGTATTGTCAGAGAAAAAATCGCAGAAATAGATTCAGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * ** * *
135011978 TCGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCGTAACGAAGCAGATTCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135012043 ATTCTTGTGTTTACAAGGGGAAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* *
135012068 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* *
135012133 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135012198 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135012263 ATTCTTATGTTTACAAGGAGCAAAC
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * * * *
135012288 CAAAGACATAGCAGATTTGACATTCAAGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * *
135012353 TCTGTATTGTCAGAGAAAAAATCGAA-AAACAGATTTGGTATCTCCATATTCGGCGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * * * *
135012417 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGTAGATTCAAGATGATTTGGT
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * *
135012482 ATTCTTCTGTTTACAAGGGGAAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135012507 TGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135012572 TCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTTCATATTCAATGGAGAGCAG
66 TCTGTATTGTCAGAGAACAAATCGA-AGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
*
135012636 ATCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
*
135012701 CATTCTTGTGTTTACAAGGAACAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
*
135012727 CGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* *
135012792 TCTGTATTGTCAGAGAA-AAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * *
135012856 TCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGA
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135012921 ATTCTTGTGTTTACAAGCAGTAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
*
135012946 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
*
135013011 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135013076 TTGAAGACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135013140 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* *
135013165 CGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * *
135013230 TCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGAATTTCCATATTCAATGGAGTGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135013295 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135013360 ATTCTTGTGTTTGCAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* ** *
135013385 CG-AGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGTGGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * *
135013449 TCTGTATTGTCAGAGAA-AAATCGAAGAAATAGATTTGGTATCTCCATATTCTACGGAGAGCAGG
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA-G
* * * * *
135013513 ATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* *
135013578 TATTCTTGTGTTTACAAGGGGCAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * *
135013604 TGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * *
135013669 TCTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* **
135013734 TCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATGAAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135013799 ATTCTTGTGTTTACAATGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* *
135013824 CGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
*
135013889 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * * *
135013954 TTGAAGGCATAGCAGATCTGACCTATCGATTTTTTCACAACGAAGCAGA-CTCAAGATGATTTGG
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGG
135014018 CATTCTTGTGTTTACAAGTG-GCAAAT
195 CATTCTTGTGTTTACAAG-GAGCAAAT
*
135014044 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* *
135014109 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135014174 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGA
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135014239 ATTCTTGTGTTTACAAGGAGTAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135014264 CGAAGACATAGCAGATCTGACCATCAGGTGTTTGCACTGAAGCAGATCCAAGATGATTTAGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
*
135014329 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135014394 TCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTAGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135014459 ATTCTTTTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * * * *
135014484 CGAAGACATAGCAGATCTGA-CATCAGGTGTTTCCATTAAAGCATATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135014548 ACTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135014613 TCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
**
135014678 ATTCTTGTGTTTACAACTAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * * ** *
135014703 CGAAGACATAGCAGATCTGGCCTTCAAGTGCTTACACTGAAGCCGATTAAAGATGATTTCGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
135014768 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135014833 TCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAGATCCAAGATGCTTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * *
135014898 ATTCTTATGTTTACAAAGACCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * *
135014923 GGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATCTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * *
135014988 TCTGTATTGGCAGAGAATAAATCGAAGAAACATATTTGGTATCTCCAT-TATCGACGGAGAGCAG
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGAGAGCAG
* *
135015052 ATTGAAGACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-G
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
*
135015116 CATTCTTGTGTTTACAAGGAGTAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * *
135015142 CGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCTGATCTAAGATGATTT----T-
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * * *
135015202 AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGGAGAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * *
135015263 ACGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGATGATTTGG
131 TCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
135015325 CAT
195 CAT
135015328 CTCTGTATTG
Statistics
Matches: 2938, Mismatches: 305, Indels: 45
0.89 0.09 0.01
Matches are distributed among these distances:
208 20 0.01
209 5 0.00
210 75 0.03
211 4 0.00
214 1 0.00
215 1 0.00
218 41 0.01
219 1031 0.35
220 1717 0.58
221 43 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAAT
Found at i:135012470 original size:439 final size:440
Alignment explanation
Indices: 135011848--135015327 Score: 5093
Period size: 439 Copynumber: 7.9 Consensus size: 440
135011838 GAGAGTAGAA
*
135011848 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGAT-TCAAGATGATTTGGCAT
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCT-AAGATGATTTGGCAT
* * **
135011912 CTCTGTATTGTCAGAGAAAAAATCGCAGAAATAGATTCAGCATCTCCATATTCGACGGAGAGCAG
65 CTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
* * * * ** * *
135011977 ATCGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCGTAACGAAGCAGATTCAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* * *
135012042 CATTCTTGTGTTTACAAGGGGAAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
195 CATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
*
135012107 AAGCAGATCCAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGG
260 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGG
* * * *
135012172 CATCTCCATATTCAATGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACA
325 CATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACA
* *
135012237 TCGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGGAGCAAAC
390 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* * * * *
135012288 CAAAGACATAGCAGATTTGACATTCAAGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* *
135012353 TCTGTATTGTCAGAGAAAAAATCGAA-AAACAGATTTGGTATCTCCATATTCGGCGGAGAGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * * * *
135012417 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGTAGATTCAAGATGATTTGGT
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * * * * *
135012482 ATTCTTCTGTTTACAAGGGGAAAATTGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
* *
135012547 AGCAGATCCAAGATGATTTGGCATCTCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGG
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA-AGAAACAGATTTGG
* * * *
135012611 CATCTTCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACA
325 CATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACA
*
135012676 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
390 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* *
135012727 CGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* *
135012792 TCTGTATTGTCAGAG-AAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * *
135012856 TCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGA
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * *
135012921 ATTCTTGTGTTTACAAGCAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
135012986 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* * *
135013051 ATCTCCATAGTCGACGGAGAGCAGATTGAAGACATAGCAGATATGACCTTTGGATGTTTTCACAT
326 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
135013116 CGAAGCAGATCCAAGATGATTT-GCATTCTTGTGTTTACAAGGAGCAAAT
391 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* * *
135013165 CGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* * * * * * *
135013230 TCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGAATTTCCATATTCAATGGAGTGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135013295 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135013360 ATTCTTGTGTTTGCAAGGAGCAAATCG-AGACATAGCAGATTTGACCTTCAGGTGTTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
** * * *
135013424 AGTGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA-AAATCGAAGAAATAGATTTGGT
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* * * *
135013488 ATCTCCATATTCTACGGAGAGCAGGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATA
326 ATCTCCATATTCGACGGAGAGCA-GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACA
* * * *
135013553 ACGAAGCAGATTCAAGATGATTTGGTATTCTTGTGTTTACAAGGGGCAAAT
390 TCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* *
135013604 TGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGAT-TCAAGATGATTTGGCAT
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCT-AAGATGATTTGGCAT
* * * * *
135013668 CTCTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAG
65 CTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
* **
135013733 ATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATGAAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* *
135013798 CATTCTTGTGTTTACAATGAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTG
195 CATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
* *
135013863 AAGCAGATCAAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGG
260 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGG
* * * * *
135013928 CATCTCCATATTCGACGGAGAGCAGATTGAAGGCATAGCAGATCTGACCTATCGATTTTTTCACA
325 CATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACA
*
135013993 ACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTACAAGTG-GCAAAT
390 TCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAG-GAGCAAAT
* *
135014044 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* * *
135014109 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGTAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135014174 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGA
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * *
135014239 ATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGATCTGACCATCAGGTGTTTGCACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
*
135014304 AGCAGATCCAAGATGATTTAGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* *
135014369 ATCTCCATTTTCGACGGAGAGCAGATCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACAT
326 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* *
135014434 CGAAGCAGATCCAAGATGATTAGGCATTCTTTTGTTTACAAGGAGCAAAT
391 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* * * * *
135014484 CGAAGACATAGCAGATCTGA-CATCAGGTGTTTCCATTAAAGCATATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* * * *
135014548 ACTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135014613 TCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
** * * *
135014678 ATTCTTGTGTTTACAACTAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
* ** *
135014743 AGCCGATTAAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
*
135014808 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACAT
326 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * *
135014873 CGAAGAAGATCCAAGATGCTTTGGCATTCTTATGTTTACAAAGACCAAAT
391 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
* * *
135014923 GGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATCTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
* * * *
135014988 TCTGTATTGGCAGAGAATAAATCGAAGAAACATATTTGGTATCTCCAT-TATCGACGGAGAGCAG
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGAGAGCAG
* *
135015052 ATTGAAGACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-G
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* *
135015116 CATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTG
195 CATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
* * * * * * * *
135015181 AAGCTGATCTAAGATGATTT----T-AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGG
260 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGG
* * * * *
135015237 CATCTCCATATTCGACGGAGAGTAGAACGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC
325 CATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCAC
*
135015301 -T-GAAGCAGATTCAAGATGATTTGGCAT
389 ATCGAAGCAGATCCAAGATGATTTGGCAT
135015328 CTCTGTATTG
Statistics
Matches: 2767, Mismatches: 255, Indels: 48
0.90 0.08 0.02
Matches are distributed among these distances:
428 23 0.01
429 1 0.00
430 83 0.03
431 2 0.00
434 1 0.00
435 1 0.00
437 41 0.01
438 245 0.09
439 1513 0.55
440 812 0.29
441 45 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (440 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATC
TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACAT
CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAAT
Found at i:135013038 original size:87 final size:89
Alignment explanation
Indices: 135012855--135013038 Score: 200
Period size: 87 Copynumber: 2.1 Consensus size: 89
135012845 CGGAGTGCAG
* * *
135012855 ATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAG
1 ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
* **
135012920 AATTCTTGTGTTTACAAGCAGTAA
66 AATTCTTGTATTTACAAGCAACAA
* * *
135012944 ATTGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTAACCTT-AGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTA
*
135013006 GCA-TCTCTGTATTGT-CAGAG-AACAA
65 GAATTCT-TGTATT-TACA-AGCAACAA
135013031 ATCGAAGA
1 ATCGAAGA
135013039 AACAGATTTG
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
86 3 0.04
87 40 0.50
88 4 0.05
89 31 0.39
90 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
AATTCTTGTATTTACAAGCAACAA
Found at i:135013107 original size:659 final size:660
Alignment explanation
Indices: 135011848--135015327 Score: 5102
Period size: 659 Copynumber: 5.3 Consensus size: 660
135011838 GAGAGTAGAA
* *
135011848 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * **
135011913 TCTGTATTGTCAGAGAAAAAATCGCAGAAATAGATTCAGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * * * ** * *
135011978 TCGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCGTAACGAAGCAGATTCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * *
135012043 ATTCTTGTGTTTACAAGGGGAAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
*
135012108 AGCAGATCCAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* * * * *
135012173 ATCTCCATATTCAATGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACAT
326 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTT
* * * *
135012238 CGAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGGAGCAAACCAAAGACATAGCAGA
391 CGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * * * *
135012303 TTTGACATTCAAGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
456 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * * *
135012368 AAAAAATCGAA-AAACAGATTTGGTATCTCCATATTCGGCGGAGAGCAGATCGAAGGCATAGCAG
521 AACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAG
* * * * * * * *
135012432 ATCTGACCTTTGGATGTTTGCATAACGAAGTAGATTCAAGATGATTTGGTATTCTTCTGTTTACA
586 ATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
* *
135012497 AGGGGAAAAT
651 AGGAGCAAAT
* * *
135012507 TGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135012572 TCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTTCATATTCAATGGAGAGCAG
66 TCTGTATTGTCAGAGAAAAAATCGA-AGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
135012636 ATCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* *
135012701 CATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTG
195 CATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTG
*
135012766 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAA-AAATTGAAGAAACAGATTTGG
260 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGG
* * *
135012830 CATCTCCATATTCGACGGAGTGCAGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACT
325 CATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACT
* * * *
135012895 TCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGCAGTAAATTGAAGACATAGCAG
390 TCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAG
135012960 ATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
455 ATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
135013025 GAACAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGGAGAGCAGATTGAAGACATAGCA
520 GAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
135013090 GATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCATTCTTGTGTTTAC
585 GATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
135013154 AAGGAGCAAAT
650 AAGGAGCAAAT
* *
135013165 CGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * * *
135013230 TCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGAATTTCCATATTCAATGGAGTGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * *
135013295 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135013360 ATTCTTGTGTTTGCAAGGAGCAAATCG-AGACATAGCAGATTTGACCTTCAGGTGTTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
** * * *
135013424 AGTGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA-AAATCGAAGAAATAGATTTGGT
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* * *
135013488 ATCTCCATATTCTACGGAGAGCAGGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCA-T
326 ATCTCCATATTCGACGGAGAGCA-GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACT
* * * * *
135013552 AACGAAGCAGATTCAAGATGATTTGGTATTCTTGTGTTTACAAGGGGCAAATTGAAGACATAGCA
390 -TCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * * *
135013617 GATCTGACCTTTAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCTCTATTTTGTCAG
454 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* *
135013682 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGC
519 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * **
135013747 AGATCTGACCTTTGGATGATTTCACATCGAAGCAGATGAAAGATGATTTGGCATTCTTGTGTTTA
584 AGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
*
135013812 CAATGAGCAAAT
649 CAAGGAGCAAAT
* *
135013824 CGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
135013889 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135013954 TTGAAGGCATAGCAGATCTGACCTATC-GATTTTTTCACAACGAAGCAGA-CTCAAGATGATTTG
131 TCGAAGACATAGCAGATCTGACCT-TCGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTG
*
135014017 GCATTCTTGTGTTTACAAGTG-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
194 GCATTCTTGTGTTTACAAG-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
135014081 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTT
258 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTT
* *
135014146 GGCATCTCCATATTCGACGGAGTGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
323 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
* *
135014211 CTTCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATCGAAGACATAGC
388 CTTCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * *
135014276 AGATCTGACCATCAGGTGTTTGCACTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTGTCA
453 AGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
*
135014341 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGACGGAGAGCAGATCGAAGACATAG
518 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
* * *
135014406 CAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTAGGCATTCTTTTGTTT
583 CAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTT
135014471 ACAAGGAGCAAAT
648 ACAAGGAGCAAAT
* * * * * *
135014484 CGAAGACATAGCAGATCTGA-CATCAGGTGTTTCCATTAAAGCATATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * *
135014548 ACTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135014613 TCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
** * * *
135014678 ATTCTTGTGTTTACAACTAGCAAATCGAAGACATAGCAGATCTGGCCTTCAAGTGCTTACACTGA
196 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
* ** *
135014743 AGCCGATTAAAGATGATTTCGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
261 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* *
135014808 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACAT
326 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTT
* * * * * * * *
135014873 CGAAGAAGATCCAAGATGCTTTGGCATTCTTATGTTTACAAAGACCAAATGGAAGACATAACAGA
391 CGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
* * *
135014938 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCTAAGATGATCTGGCATCTCTGTATTGGCAGAG
456 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * * *
135015003 AATAAATCGAAGAAACATATTTGGTATCTCCAT-TATCGACGGAGAGCAGATTGAAGACATAGCA
521 AACAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGAGAGCAGATCGAAGACATAGCA
135015067 GATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCATTCTTGTGTTTAC
585 GATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
135015131 AAGGAGTAAAT
650 AAGGAGCAAAT
* * *
135015142 CGAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCTGATCTAAGATGATTT----T-
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * * * *
135015202 AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGGAGAGTAGA
66 TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135015263 ACGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGATGATTTGG
131 TCGAAGACATAGCAGATCTGACCTTC-GGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
135015325 CAT
195 CAT
135015328 CTCTGTATTG
Statistics
Matches: 2555, Mismatches: 248, Indels: 47
0.90 0.09 0.02
Matches are distributed among these distances:
648 24 0.01
649 1 0.00
650 80 0.03
651 3 0.00
654 2 0.00
655 1 0.00
657 117 0.05
658 738 0.29
659 1168 0.46
660 380 0.15
661 41 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (660 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
TCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTT
CGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
TCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAG
ATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
AGGAGCAAAT
Found at i:135013911 original size:87 final size:89
Alignment explanation
Indices: 135013733--135013916 Score: 220
Period size: 87 Copynumber: 2.1 Consensus size: 89
135013723 TGGAGAGCAG
* *
135013733 ATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATGAAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
* **
135013798 CATTCTTGTGTTTACAATGAGCAA
66 CATTCTTGTATTTACAATGAAAAA
*
135013822 ATCGAAGACATAGCAGATTTGACCTTCAGG-TG-TTT-ACA-CTGAAGCAGATCAAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGATTTCACATC-GAAGCAGATCAAAGATGATTT
135013883 GGCA-TCTCTGTATTGT-CAGA-GAAAAA
64 GGCATTCT-TGTATT-TACA-ATGAAAAA
135013909 ATCGAAGA
1 ATCGAAGA
135013917 AACAGATTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
86 4 0.05
87 46 0.55
88 5 0.06
89 27 0.32
90 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
CATTCTTGTATTTACAATGAAAAA
Found at i:135014130 original size:87 final size:89
Alignment explanation
Indices: 135013921--135014136 Score: 205
Period size: 87 Copynumber: 2.4 Consensus size: 89
135013911 CGAAGAAACA
** * * * * * *
135013921 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGGCATAGCAGATCTGACCTATCGATTT
1 GATTTGGCATCTCTGTATT-GTCAGAGAGCAAATTGAAGACATAGCAGATCTGACCTATCGAGTG
135013986 TTTCACAACGAAGCAGACTCAAGAT
65 TTTCACAACGAAGCAGACTCAAGAT
* *
135014011 GATTTGGCAT-TCTTGTGTT-TACA-AGTGGCAAATTGAAGACATAGCAGATCTGACCT-TC-AG
1 GATTTGGCATCTC-TGTATTGT-CAGAG-AGCAAATTGAAGACATAGCAGATCTGACCTATCGA-
135014071 GTGTTT-AC-ACTGAAGCAGA-TCCAAGAT
62 GTGTTTCACAAC-GAAGCAGACT-CAAGAT
* *
135014098 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGA
135014137 AACAGATTTG
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
86 3 0.03
87 44 0.43
88 13 0.13
89 30 0.29
90 13 0.13
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (89 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGACATAGCAGATCTGACCTATCGAGTGT
TTCACAACGAAGCAGACTCAAGAT
Found at i:135014352 original size:87 final size:89
Alignment explanation
Indices: 135014173--135014356 Score: 227
Period size: 87 Copynumber: 2.1 Consensus size: 89
135014163 CGGAGTGTAG
** *
135014173 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAG
1 ATCGAAGACATAGCAGATCTGACCTCAGGATGTTTGCACTTCGAAGCAGATCCAAGATGATTTAG
* **
135014238 AATTCTTGTGTTTACAAGGAGTAA
66 AATTCTTGTATTTACAAGGAACAA
135014262 ATCGAAGACATAGCAGATCTGACCATCAGG-TGTTTGCAC-T-GAAGCAGATCCAAGATGATTTA
1 ATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTGCACTTCGAAGCAGATCCAAGATGATTTA
*
135014324 GCA-TCTCTGTATTGT-C-AGAGAACAA
65 GAATTCT-TGTATT-TACAAG-GAACAA
135014349 ATCGAAGA
1 ATCGAAGA
135014357 AACAGATTTG
Statistics
Matches: 84, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
86 5 0.06
87 42 0.50
88 2 0.02
89 32 0.38
90 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTCAGGATGTTTGCACTTCGAAGCAGATCCAAGATGATTTAG
AATTCTTGTATTTACAAGGAACAA
Found at i:135015660 original size:220 final size:220
Alignment explanation
Indices: 135015265--135019186 Score: 5797
Period size: 220 Copynumber: 17.9 Consensus size: 220
135015255 AGAGTAGAAC
* *
135015265 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * **
135015330 CTGTATTGTCAGAGAAAAAATCGCAGAAATAGATTCAGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * ** * *
135015395 CGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCGTAACGAAGCAGATTCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135015460 TTCTTGTGTTTACAAGGGGAAAATT
196 TTCTTGTGTTTACAAGGAGCAAATT
*
135015485 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135015550 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135015615 CGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* **
135015680 TTCTTATGTTTACAAGGAGCAAACC
196 TTCTTGTGTTTACAAGGAGCAAATT
* * * * * *
135015705 AAAGACATAGCAGATTTGACATTCAAGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * *
135015770 CTGTATTGTCAGAGAAAAAATCGAA-AAACAGATTTGGTATCTCCATATTCGGCGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * * * *
135015834 CGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGTAGATTCAAGATGATTTGGTA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
*
135015899 TTCTTCTGTTTACAAAGG-GCAAATT
196 TTCTTGTGTTTAC-AAGGAGCAAATT
* * * **
135015924 GAAGACATAGAAGATCTGACCATT-AGGTGTTTACTCAGAAGCAGATGGAAGATGATTTGGCATC
1 GAAGACATAGCAGATCTGACC-TTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * *
135015988 TCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTTCATATTCAATGGAGAGCAGA
65 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
*
135016053 TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
130 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135016118 ATTCTTGTGTTTACAAGGAACAAATA
195 ATTCTTGTGTTTACAAGGAGCAAATT
* *
135016144 GAAGACATAGCAGATTTGACCTTCAGGTTTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135016209 CTGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
*
135016274 CGAA-AGCATAGCAGATCTGACCTTTGGACGTTTTCACGA-CGAAGCAGA-CTCAAGATGATTTG
131 CGAAGA-CATAGCAGATCTGACCTTTGGATGTTTTCAC-ATCGAAGCAGATC-CAAGATGATTTG
*
135016336 GCATTCTTGTGTTTACAAGGGGCAAATT
193 GCATTCTTGTGTTTACAAGGAGCAAATT
*
135016364 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
*
135016429 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * *
135016494 CGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135016559 TTCTTGTGTTTACAAGCAGTAAATT
196 TTCTTGTGTTTACAAGGAGCAAATT
135016584 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
*
135016649 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135016714 TGAAGACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
*
135016778 TTCTTGTGTTTACAAGGAGCAAATC
196 TTCTTGTGTTTACAAGGAGCAAATT
* *
135016803 GAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGAATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * * * *
135016868 CTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGAATTTCCATATTCAATGGAGTGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135016933 CGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135016998 TTCTTGTGTTTGCAAGGAGCAAATC
196 TTCTTGTGTTTACAAGGAGCAAATT
* ** *
135017023 GAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGTGGATCTAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * *
135017088 CTGTATTGTCAGAGAAAAAATCGAAGAAATAGATTTGGTATCTCCATATTCTACGGAGAGCAGGA
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA-GA
* * * * * *
135017153 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGT
130 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135017218 ATTCTTGTGTTTACAAGGGGCAAATT
195 ATTCTTGTGTTTACAAGGAGCAAATT
* *
135017244 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * *
135017309 CTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* **
135017374 CGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATTAAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135017439 TTCTTGTGTTTACAATGAGCAAATC
196 TTCTTGTGTTTACAAGGAGCAAATT
* *
135017464 GAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
*
135017529 CTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * * *
135017594 TGAAGGCATAGCAGATCTGACCTATCGATTTTTTCACAACGAAGCAGA-CTCAAGATGATTTGGC
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGGC
135017658 ATTCTTGTGTTTACAAGTG-GCAAATT
195 ATTCTTGTGTTTACAAG-GAGCAAATT
*
135017684 GAAGACATAGCAGATCTGACCTTCAGCTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135017749 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGGAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * *
135017814 CGAAGACATAGCAGATCGGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
*
135017879 TTCTTGTGTTTACAAGGAGTAAATT
196 TTCTTGTGTTTACAAGGAGCAAATT
*
135017904 GAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135017969 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCTATTTTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135018034 CGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTAGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135018099 TTCTTTTGTTTACAAGGAGCAAATC
196 TTCTTGTGTTTACAAGGAGCAAATT
* * * *
135018124 GAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTGAAGCATATCTAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * * *
135018188 CTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCTATATTCGACGAAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135018253 CGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* * *
135018318 TTCTTGTGCTTACGAGGAGCAATTT
196 TTCTTGTGTTTACAAGGAGCAAATT
* *
135018343 GAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * *
135018408 CTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGTATCTCCATACTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * *
135018473 CGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
*
135018538 TTCTTGTGTTTAGAAGGAGCAAATT
196 TTCTTGTGTTTACAAGGAGCAAATT
* * * * *
135018563 GAAGACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGCCGATTCAAGATGATTTCGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
*
135018628 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135018693 CGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAAGATCCAAGATGATTTGGC
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG-CAGATCCAAGATGATTTGGC
* * * *
135018758 ATTCTTATGTTTACAAAGACCAAATG
195 ATTCTTGTGTTTACAAGGAGCAAATT
* *
135018784 GAAGACATAAC-GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* *
135018848 CTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCAT-TGTCGATGGAGAGCAGA
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGAGAGCAGA
* * * * *
135018912 TTGAAGACATAGTAGATATGACCTTTGGATGTTTTCACGTCGAAGCAGATCCAAGGTGATTT-GC
130 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135018976 ATTCTTGTGTTTACAAGGAGCATATC
195 ATTCTTGTGTTTACAAGGAGCAAATT
* * *
135019002 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCTAAGATGATTT----T-A
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
* * * * * * * *
135019062 C---A-TATCTGAGATCAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGGAGAGTAGAA
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * *
135019123 CGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGATGATTTGGC
131 CGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135019185 AT
195 AT
135019187 CTCTGTATTG
Statistics
Matches: 3342, Mismatches: 336, Indels: 59
0.89 0.09 0.02
Matches are distributed among these distances:
208 19 0.01
209 5 0.00
210 75 0.02
211 4 0.00
214 1 0.00
215 1 0.00
218 33 0.01
219 655 0.20
220 2297 0.69
221 252 0.08
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
TTCTTGTGTTTACAAGGAGCAAATT
Found at i:135016235 original size:87 final size:89
Alignment explanation
Indices: 135016055--135016215 Score: 233
Period size: 87 Copynumber: 1.8 Consensus size: 89
135016045 AGAGCAGATC
135016055 GAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
1 GAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
* *
135016120 TCTTGTGTTTACAAGGAACAAATA
66 TCTTGTATTTACAAGGAAAAAATA
*
135016144 GAAGACATAGCAGATTTGACCTTCAGG-T-TTTT-ACA-CTGAAGCAGATCCAAGATGATTTGGC
1 GAAGACATAGCAGATCTGACCTTC-GGATGTTTTCACATC-GAAGCAGATCCAAGATGATTTGGC
135016205 A-TCTCTGTATT
64 ATTCT-TGTATT
135016216 GTCAGAGAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
86 4 0.06
87 33 0.49
88 4 0.06
89 24 0.36
90 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (89 bp):
GAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
TCTTGTATTTACAAGGAAAAAATA
Found at i:135016675 original size:87 final size:89
Alignment explanation
Indices: 135016492--135016675 Score: 200
Period size: 87 Copynumber: 2.1 Consensus size: 89
135016482 CGGAGTGCAG
* * *
135016492 ATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAG
1 ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
* **
135016557 AATTCTTGTGTTTACAAGCAGTAA
66 AATTCTTGTATTTACAAGCAACAA
* * *
135016581 ATTGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTAACCTT-AGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTA
*
135016643 GCA-TCTCTGTATTGT-CAGAG-AACAA
65 GAATTCT-TGTATT-TACA-AGCAACAA
135016668 ATCGAAGA
1 ATCGAAGA
135016676 AACAGATTTG
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
86 3 0.04
87 40 0.50
88 4 0.05
89 31 0.39
90 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTAACCTTAGGATGTTTACACTTCGAAGCAGATCCAAGATGATTTAG
AATTCTTGTATTTACAAGCAACAA
Found at i:135016781 original size:659 final size:660
Alignment explanation
Indices: 135015265--135019183 Score: 5815
Period size: 659 Copynumber: 6.0 Consensus size: 660
135015255 AGAGTAGAAC
*
135015265 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
* * * **
135015330 CTGTATTGTCAGAGAAAAAATCGCAGAAATAGATTCAGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * * * ** * *
135015395 CGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCGTAACGAAGCAGATTCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* * *
135015460 TTCTTGTGTTTACAAGGGGAAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* *
135015525 GCAGATCCAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCA
261 GCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
* * * *
135015590 TCTCCATATTCAATGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATC
326 TCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGATGTTTTCACATC
* * *
135015655 GAAGCAGATCCAAGATGATTTGGCATTCTTATGTTTACAAGGAGCAAACCAAAGACATAGCAGAT
391 GAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGAT
* * * * *
135015720 TTGACATTCAAGTGTTTACACTGAAGCGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
456 CTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * *
135015785 AAAAATCGAA-AAACAGATTTGGTATCTCCATATTCGGCGGAGAGCAGATCGAAGGCATAGCAGA
521 ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
* * * * *
135015849 TCTGACCTTTGGATGTTTGCA-TAACGAAGTAGATTCAAGATGATTTGGTATTCTTCTGTTTACA
586 TCTGACCTTTGGATGTTTTCACT-TCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTAC-
135015913 AAGG-GCAAATT
649 AAGGAGCAAATT
* * * **
135015924 GAAGACATAGAAGATCTGACCATT-AGGTGTTTACTCAGAAGCAGATGGAAGATGATTTGGCATC
1 GAAGACATAGCAGATCTGACC-TTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATC
* * * *
135015988 TCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTTCATATTCAATGGAGAGCAGA
65 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
*
135016053 TCGAAGACATAGCAGATCTGACCTTCGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
130 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* * * *
135016118 ATTCTTGTGTTTACAAGGAACAAATAGAAGACATAGCAGATTTGACCTTCAGGTTTTTACACTGA
195 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
*
135016183 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGC
260 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGC
*
135016248 ATCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGACGTTTTCACGA
325 ATCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGATGTTTTCAC-A
* *
135016313 -CGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTACAAGGGGCAAATTGAAGACATAGCA
389 TCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
*
135016376 GATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
453 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* *
135016441 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGCAGATCGAAGACATAGT
518 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * *
135016506 AGATCTAACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTA
583 AGATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTA
* *
135016571 CAAGCAGTAAATT
648 CAAGGAGCAAATT
*
135016584 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
*
135016649 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135016714 TGAAGACATAGCAGATATGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT-GCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
*
135016778 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* * * *
135016843 GCAGATCCAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGAA
261 GCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
* * * * * *
135016908 TTTCCATATTCAATGGAGTGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATC
326 TCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGATGTTTTCACATC
*
135016973 GAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTGCAAGGAGCAAATCGAAGACATAGCAGAT
391 GAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGAT
* ** *
135017038 TTGACCTTCAGGTGTTTACACTGAAGTGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
456 CTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * * *
135017103 AAAAATCGAAGAAATAGATTTGGTATCTCCATATTCTACGGAGAGCAGGATCGAAGGCATAGCAG
521 ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA-GATCGAAGACATAGCAG
* * *
135017168 ATCTGACCTTTGGATGTTTGCA-TAACGAAGCAGATTCAAGATGATTTGGTATTCTTGTGTTTAC
585 ATCTGACCTTTGGATGTTTTCACT-TCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTAC
*
135017232 AAGGGGCAAATT
649 AAGGAGCAAATT
*
135017244 GAAGACATAGCAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
* * * *
135017309 CTATTTTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* **
135017374 CGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATTAAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* *
135017439 TTCTTGTGTTTACAATGAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAA
196 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
*
135017504 GCAGATCAAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
261 GCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
* * * * * *
135017569 TCTCCATATTCGACGGAGAGCAGATTGAAGGCATAGCAGATCTGACCTATCGATTTTTTCACAAC
326 TCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGATGTTTTCACATC
*
135017634 GAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTACAAGTG-GCAAATTGAAGACATAGCAG
391 GAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAG-GAGCAAATCGAAGACATAGCAG
*
135017697 ATCTGACCTTCAGCTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
454 ATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
* *
135017762 GAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGTGGAGATCGAAGACATAGCA
519 GAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
* * *
135017827 GATCGGACCTTTGGATGTTTTCACTTCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTAC
584 GATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTAC
*
135017892 AAGGAGTAAATT
649 AAGGAGCAAATT
* *
135017904 GAAGACATAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
* *
135017969 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCTATTTTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135018034 CGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTAGGCA
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* * *
135018099 TTCTTTTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGA-CATCAGGTGTTTACATTGAA
196 TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
* * * *
135018163 GCATATCTAAGATGATTTGGCATCTCTATATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCA
261 GCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
* * *
135018228 TCTCTATATTCGACGAAGAGCAGATCG-AAGACATAGCAGATCTGACCTTTGGTTGTTTTCACAT
326 TCTCCATATTCGACGGAGAGCAGATCGAAAG-CATAGCAGATCTGACCTTTGGATGTTTTCACAT
* * * * * *
135018292 CGAAGAAGATCCAAGATGATTTGGCATTCTTGTGCTTACGAGGAGCAATTTGAAGACATAACAGA
390 CGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGA
*
135018357 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAG
455 TCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * *
135018422 AACAAATCAAAGAAACAGATTTGGTATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGCAG
520 AACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAG
* * * * * * *
135018487 ATCTAACCTTTGGTTGTTTTCACATCAAAGCAGATACAAGATGATTTGGCATTCTTGTGTTTAGA
585 ATCTGACCTTTGGATGTTTTCACTTCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTACA
135018552 AGGAGCAAATT
650 AGGAGCAAATT
* * * *
135018563 GAAGACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGCCGATTCAAGATGATTTCGCATCT
1 GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
*
135018628 CTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* *
135018693 CGAAGACATAGCAGATCTGACCTTTGAATGTTTTCACATCGAAGAAAGATCCAAGATGATTTGGC
131 CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG-CAGATCCAAGATGATTTGGC
* * * * *
135018758 ATTCTTATGTTTACAAAGACCAAATGGAAGACATAAC-GATCTGACCTTCAGGTGTTTACACTGA
195 ATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGA
* * *
135018822 AGCAGATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGC
260 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGC
* * * *
135018887 ATCTCCAT-TGTCGATGGAGAGCAGATTG-AAGACATAGTAGATATGACCTTTGGATGTTTTCAC
325 ATCTCCATAT-TCGACGGAGAGCAGATCGAAAG-CATAGCAGATCTGACCTTTGGATGTTTTCAC
* * *
135018950 GTCGAAGCAGATCCAAGGTGATTT-GCATTCTTGTGTTTACAAGGAGCATATCGAAGACATAGCA
388 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * * * *
135019014 GATCTGACCTTTAGGTGTTTACACTGAAGCAGATCTAAGATGATTT----T-AC---A-TATCTG
453 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * *
135019070 AGATCAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGGAGAGTAGAACGAAGACATAGC
518 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * *
135019135 AGATCTGACCTTCAGG-TGTTTACGC-T-GAAGCAGATTCAAGATGATTTGG
583 AGATCTGACCTT-TGGATGTTTTCACTTCGAAGCAGATTCAAGATGATTTGG
135019184 CATCTCTGTA
Statistics
Matches: 2954, Mismatches: 284, Indels: 55
0.90 0.09 0.02
Matches are distributed among these distances:
648 21 0.01
649 1 0.00
650 78 0.03
651 3 0.00
654 1 0.00
655 1 0.00
658 5 0.00
659 1449 0.49
660 1052 0.36
661 342 0.12
662 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (660 bp):
GAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCT
CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
CGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
TTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCA
TCTCCATATTCGACGGAGAGCAGATCGAAAGCATAGCAGATCTGACCTTTGGATGTTTTCACATC
GAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGAT
CTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGA
TCTGACCTTTGGATGTTTTCACTTCGAAGCAGATTCAAGATGATTTGGAATTCTTGTGTTTACAA
GGAGCAAATT
Found at i:135017550 original size:87 final size:89
Alignment explanation
Indices: 135017372--135017555 Score: 220
Period size: 87 Copynumber: 2.1 Consensus size: 89
135017362 TGGAGAGCAG
* *
135017372 ATCGAAGACATAGCAGATCTGACCTTTGGATGATTTCACATCGAAGCAGATTAAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
* **
135017437 CATTCTTGTGTTTACAATGAGCAA
66 CATTCTTGTATTTACAATGAAAAA
*
135017461 ATCGAAGACATAGCAGATTTGACCTTCAGG-TG-TTT-ACA-CTGAAGCAGATCAAAGATGATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGATTTCACATC-GAAGCAGATCAAAGATGATTT
135017522 GGCA-TCTCTGTATTGT-CAGA-GAAAAA
64 GGCATTCT-TGTATT-TACA-ATGAAAAA
135017548 ATCGAAGA
1 ATCGAAGA
135017556 AACAGATTTG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
86 4 0.05
87 46 0.55
88 5 0.06
89 27 0.32
90 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGATTTCACATCGAAGCAGATCAAAGATGATTTGG
CATTCTTGTATTTACAATGAAAAA
Found at i:135017769 original size:87 final size:89
Alignment explanation
Indices: 135017560--135017775 Score: 205
Period size: 87 Copynumber: 2.4 Consensus size: 89
135017550 CGAAGAAACA
** * * * * * *
135017560 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGGCATAGCAGATCTGACCTATCGATTT
1 GATTTGGCATCTCTGTATT-GTCAGAGAGCAAATTGAAGACATAGCAGATCTGACCTATCGACTG
135017625 TTTCACAACGAAGCAGACTCAAGAT
65 TTTCACAACGAAGCAGACTCAAGAT
* *
135017650 GATTTGGCAT-TCTTGTGTT-TACA-AGTGGCAAATTGAAGACATAGCAGATCTGACCT-TC-AG
1 GATTTGGCATCTC-TGTATTGT-CAGAG-AGCAAATTGAAGACATAGCAGATCTGACCTATCGA-
135017710 CTGTTT-AC-ACTGAAGCAGA-TCCAAGAT
62 CTGTTTCACAAC-GAAGCAGACT-CAAGAT
* *
135017737 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGA
135017776 AACAGATTTG
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
86 3 0.03
87 44 0.43
88 13 0.13
89 30 0.29
90 13 0.13
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGACATAGCAGATCTGACCTATCGACTGT
TTCACAACGAAGCAGACTCAAGAT
Found at i:135018137 original size:89 final size:86
Alignment explanation
Indices: 135018026--135018185 Score: 212
Period size: 89 Copynumber: 1.8 Consensus size: 86
135018016 TTTCGACGGA
* * * **
135018026 GAGCAGATCGAAGACATAGCAGATTTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACATCAGG-TG-TTT-ACATCGAAGCAGATCCAAGATG
135018091 ATTAGGCATTCTTTTGTTTACAAG
63 ATTAGGCATTCTTTTGTTTACAAG
* * *
135018115 GAGCAAATCGAAGACATAGCAGATCTGACATCAGGTGTTTACATTGAAGCATATCTAAGATGATT
1 GAGCAAATCGAAGACATAGCAGATCTGACATCAGGTGTTTACATCGAAGCAGATCCAAGATGATT
*
135018180 TGGCAT
66 AGGCAT
135018186 CTCTATATTG
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 27 0.44
87 3 0.05
88 2 0.03
89 30 0.48
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (86 bp):
GAGCAAATCGAAGACATAGCAGATCTGACATCAGGTGTTTACATCGAAGCAGATCCAAGATGATT
AGGCATTCTTTTGTTTACAAG
Found at i:135019530 original size:220 final size:220
Alignment explanation
Indices: 135019123--135019979 Score: 1277
Period size: 220 Copynumber: 3.9 Consensus size: 220
135019113 GAGAGTAGAA
* * *
135019123 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* * * * *
135019188 TCTGTATTGTCAGAGAAAAAATCGCAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * * * *
135019253 TCGAAGGCGTAGCACATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
* *
135019318 ATTCTTGTGTTTACAAGGGGAAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135019343 TGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT-AAAGCATATCCAAGATGATTTGGAAT
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAA-CAGATCCAAGATGATTTGGCAT
* *
135019407 CTCTGTATTGTCAGAGA-ACAAATCGAAGAAATAGATTTGGCAACTCCATATTCAATGGAGAGCA
65 CTCTGTATTGTCAGAGAGA-AAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCA
* * *
135019471 GATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTG
129 GATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTG
135019536 GCATTCTTGTGTTTACAAGGAGCAAAT
194 GCATTCTTGTGTTTACAAGGAGCAAAT
* * * *
135019563 CGAAGACATAGTAGATTTGACCTCCAGGTGTTTACACTGAAACAGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* *
135019628 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATATTCAACAGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * *
135019693 TCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCAAAGTAGATCCAAGATGATTTAGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
135019758 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * *
135019783 CGAAGACATAGCAAATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
* *
135019848 TCTATATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCTCCATATTCAACGGAGAGCAGA
66 TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
* * * * *
135019913 TCGAAGGCATAGAAGATCTGACCTTTGGATGTGTACATAACGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
135019978 AT
196 AT
135019980 CCCTGTATTA
Statistics
Matches: 583, Mismatches: 50, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
219 3 0.01
220 576 0.99
221 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAACAGATCCAAGATGATTTGGCATC
TCTGTATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAGCAGA
TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACAACAAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAAT
Found at i:135020016 original size:133 final size:133
Alignment explanation
Indices: 135019827--135020112 Score: 378
Period size: 133 Copynumber: 2.2 Consensus size: 133
135019817 CACTGAAACG
* * * * *
135019827 GATCTAAGATGATTTGGCATCTCTATATTGTCAGAGAGAAAATCGAAGAAATAGATTTGGTATCT
1 GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCT
* * *
135019892 CCATATTCAACGGAGAGCAGATCGAAGGCATAGAAGATCTGACCTTTGGATGTGTACATAACGAA
66 CCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACAAA
135019957 GCA
131 GCA
* *
135019960 GATCCAAGATGATTTGGCATCCCTGTATTATCAGAGA-ATAAATC-AGAGAAACAGATTTGGCAT
1 GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGA-AAATCGA-AGAAACAGATTTGGCAT
* * * * * * *
135020023 CTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCACATCA
64 CTCCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACA
135020088 AAGCA
129 AAGCA
*
135020093 GATAAAAGATGATTTGGCAT
1 GATCAAAGATGATTTGGCAT
135020113 TCTTGTGTTT
Statistics
Matches: 133, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
132 2 0.02
133 131 0.98
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (133 bp):
GATCAAAGATGATTTGGCATCCCTATATTATCAGAGAGAAAATCGAAGAAACAGATTTGGCATCT
CCATATTCAACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTTGGATGTGTACACAACAAA
GCA
Found at i:135020336 original size:220 final size:220
Alignment explanation
Indices: 135019906--135023162 Score: 4556
Period size: 220 Copynumber: 14.9 Consensus size: 220
135019896 ATTCAACGGA
* * * * *
135019906 GAGCAGATCGAAGGCATAGAAGATCTGACCTT-TGGATGTGTACA-TAACGAAGCAGATCCAAGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACACT---GAAGCAGATCCAAGA
* * *
135019969 TGATTTGGCATCCCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTC
62 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA-AGAAACAGATTTGGCATCTCCATATTC
* * * * * **
135020033 AATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCACATCAAAGCAGATAA
126 GACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCC
135020098 AAGATGATTTGGCATTCTTGTGTTTACAAG
191 AAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
135020128 GAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGAGTTTACACTGAAGCAGATCCAACATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * * *
135020193 TTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTTGCATTTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* *
135020258 AGAGCAGATCGAAGACATAGTAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * *
135020323 AATTTGGCATTCTTATGATTACAAA
196 GATTTGGCATTCTTGTGTTTACAAG
* * *
135020348 GACCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135020413 TTGGCATCTCTTTATTGTCAGAGAA-AAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * * *
135020477 AGAGCAGATCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135020542 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* *
135020567 GGGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135020632 TTGGAATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCAATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * *
135020697 AGGGCAGATCGAAGGCATAGCAGATCTGACCTCTGTATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135020762 GATTTAGCTTTCTTGTGTTTTCAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * *
135020787 GAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135020852 TTGGCATCTCTGTATTGTCAGAGAAAAAATCTAAGAAATAGATTTGGTATCTCCATATTCAACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * * *
135020917 AGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135020982 GATTTGGCATTCTTCTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * *
135021007 GGGCAAATTGAAGACAAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135021072 TTGGCATCTCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTCAATG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGA-AGAAACAGATTTGGCATCTCCATATTCGACG
*
135021136 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
*
135021201 TGATTTGGCATTCTTGTTTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
** *
135021227 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135021292 TTTGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * * *
135021357 AGAGCAGATCGAAGGCATAGAAAATCTGACCTTTGGATGTTTTCACAACGAAGCAGA-CTCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGA
*
135021421 TGATTTGGCATTCTTGTGTTTATAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
*
135021447 GTA-CAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGA
1 G-AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGA
* * * *
135021511 TTTGGCATCTATGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCACCTCCATATTCAACA
65 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACG
*
135021576 GAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* *
135021641 TGATTTGACATTTTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * * * * * *
135021667 GAGCAAATCAAAGTCATGGCAGATTTGACCTTCACGTGTTTGCACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * **** * * *
135021732 TTGGCATCTCCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* ** * * *
135021797 AGAGCAGATCAAAGACATAATAGATCTGACATTTGGATGTTTTCACATCTAAGCAGGTCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135021862 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
*
135021887 GAGCGAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
135021952 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135022017 AGAGCAGAT------C-T----G---T--CCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135022066 GATTTAGAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * * * *
135022091 GAGTAAGTTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135022156 TTGGTATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135022221 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135022286 GATTTAGAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * *
135022311 GAGTAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * *
135022376 TTGGTATCTTTATATTGTCAGAGAACAAATCGAAGAAACAGATTTTGCATCCCCATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
135022441 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
135022506 GATTTGGCATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* * *
135022531 GAGCAAATCGAAGACAGAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * *
135022596 TTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAATAGGTTTGGCATCTCTATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* *
135022660 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
*
135022725 GATTT-GAATTCTTGTGTTTACAAG
196 GATTTGGCATTCTTGTGTTTACAAG
* *
135022749 GAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135022814 CTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTTCATATTTGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * **
135022879 AGAGCAGATCGAAGACATAGCAGATCTGACCTTT-GATTGTTTTCACATCAAAGCAAAGACAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA-TGTTTTCACATCGAAGCAGATCCAAGA
135022943 TGATTTGGCATTCTTGTGTTTACAAG
195 TGATTTGGCATTCTTGTGTTTACAAG
* * * *
135022969 GAGCAAATCGAAGACATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * * * *
135023034 TT----T-AC---A-TATCTGAGAACAAATTGAATAAATAGATTTGGCATCTACATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
* * *
135023090 AGACCAGATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
135023152 TGATTTGGCAT
195 TGATTTGGCAT
135023163 CTCTGTATTG
Statistics
Matches: 2719, Mismatches: 285, Indels: 75
0.88 0.09 0.02
Matches are distributed among these distances:
204 187 0.07
206 1 0.00
209 23 0.01
210 2 0.00
211 83 0.03
212 1 0.00
213 2 0.00
214 1 0.00
215 2 0.00
216 1 0.00
218 100 0.04
219 400 0.15
220 1875 0.69
221 4 0.00
222 34 0.01
223 3 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTGGCATTCTTGTGTTTACAAG
Found at i:135020359 original size:133 final size:131
Alignment explanation
Indices: 135020128--135020366 Score: 295
Period size: 133 Copynumber: 1.8 Consensus size: 131
135020118 TGTTTACAAG
* *
135020128 GAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGAGTTTACACTGAAGCAGATCCAACATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGAGTTTACACTGAAGCAGATCCAACATAAT
* * *
135020193 TTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTTGCATTTCCATATTCGACGG
66 TTGACATCTCTTTATTGACAAAGAACAAATTGAAGAAATAGATTTTGCATTTCCATATTCGACGG
135020258 A
131 A
* * * * *
135020259 GAGCAGATCGAAGACATAGTAGATCTGACCTTTA-GATGTTTTCACATCGAAGCAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGA-GTTTACAC-T-GAAGCAGATCCAACAT
* * *
135020323 AATTTGGCAT-TCTTATGATT-ACAAAGACCAAATTGAAGACATAG
63 AATTTGACATCTCTT-T-ATTGACAAAGAACAAATTGAAGAAATAG
135020367 CAGATCTGAC
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
130 2 0.02
131 37 0.41
132 5 0.06
133 43 0.48
134 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (131 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGAGTTTACACTGAAGCAGATCCAACATAAT
TTGACATCTCTTTATTGACAAAGAACAAATTGAAGAAATAGATTTTGCATTTCCATATTCGACGG
A
Found at i:135020410 original size:660 final size:655
Alignment explanation
Indices: 135019906--135037133 Score: 5500
Period size: 659 Copynumber: 26.1 Consensus size: 655
135019896 ATTCAACGGA
* * * * *
135019906 GAGCAGATCGAAGGCATAGAAGATCTGACCTT-TGGATGTGTACA-TAACGAAGCAGATCCAAGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACACT---GAAGCAGATCCAAGA
* * *
135019969 TGATTTGGCATCCCTGTATTATCAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTC
62 TGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGA-AGAAACAGATTTGGCATCTCCATATTC
* * * **
135020033 AATGGAGAGCAGATCGAAGACATAGCAGATGTGACCTTTGGCTGTTTTCACATCAAAGCAGATAA
126 AATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCC
* *
135020098 AAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAG
191 AAGATGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAG
* * * * * *
135020163 GAGTTTACACTGAAGCAGATCCAACATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAG
256 GTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* * * * *
135020228 AAATAGATTTTGCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTTA
321 AAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTG
* * * * *
135020293 GATGTTTTCACATCGAAGCAGATCCAAGATAATTTGGCATTCTTATGATTACAAAGACCAAATTG
386 GATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTG
*
135020358 AAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATTCAAGATGATTTGGCATCTC
451 AAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-
* * * *
135020423 TTTATTGT-CAGAGA-AAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC-GGAGAGCAGA
515 TGTATTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGA
* * * * * * * * *
135020485 TCGAAGGCATAGCAGACCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGC
579 TCGAA-G-A-A-TAGATCTGACATTTGGATGTTTTCA-CATG-AGAAAATCCAAGATGATTTGGC
135020550 ATTCTTGTGTTTACAAGG
638 ATTCTTGTGTTTACAAGG
*
135020568 G-GCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135020632 TTGGAATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCAATGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * * *
135020697 AGGGCAGATCGAAGGCATAGCAGATCTGACCTCTGTATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135020762 GATTTAGCTTTCTTGTGTTTTCAAGGAGCAAATCGAAGACATAGCAGATTTGACCTTCAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * * * * *
135020827 TACACTGAAACGGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCTAAGAAATA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135020892 GATTTGGTATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * * * *
135020957 TTGCATAACGAAGCAGATTCAAGATGATTTGGCATTCTTCTGTTTACAAGGGGCAAATTGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGAC
* *
135021022 AAAGCAGATCTGACCTTCAAGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTAT
* ** * *
135021087 TAT-CAGAGAATAAATC-AGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAA
520 TCTACAGAGAGCAAATCGA-AGAAACAGATTTGGCACCTCCATATTCACTGGAGAGCAGATCGAA
* *
135021150 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATTCT
584 GA-AT---AGATCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTCT
*
135021215 TGTTTTTACAA-G
643 TGTGTTTACAAGG
** *
135021227 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135021292 TTTGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * * *
135021357 AGAGCAGATCGAAGGCATAGAAAATCTGACCTTTGGATGTTTTCACAACGAAGCAGA-CTCAAGA
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGA
* * *
135021421 TGATTTGGCATTCTTGTGTTTATAAGGTA-CAAATTGAAGACATAGCAGATCTGACCTTCAGGTG
195 TGATTTAGCATTCTTGTGTTTACAAGG-AGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTG
*
135021485 TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAATCGAAGAAA
259 TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAA
* * * *
135021550 CAGATTTGGCACCTCCATATTCAACAGAGAGCAGATCGAAGGCATAGCAGATCTGACCTTTGGAT
324 CAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGAT
* * **
135021615 GTTTTCACATCGAAGCAGATCCAAGATGATTTGACATTTTTGTGTTTACAAGGAGCAAATCAAAG
389 GTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
* * * * * * * *
135021680 TCATGGCAGATTTGACCTTCACGTGTTTGCACTGAAGCGGATCTAAGATGATTTGGCATCTCCGT
454 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGT
*** * * *
135021745 ATTCT-CAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCATATTTGA-TGGAGAGCAGATCA
518 ATTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATA-TTCACTGGAGAGCAGATC-
* * * **
135021808 AAGACATAATAGATCTGACATTTGGATGTTTTCACATCTAAGCAGGTCCAAGATGATTTGGCATT
581 --GA-AGAATAGATCTGACATTTGGATGTTTTCACA--TGAGAAAATCCAAGATGATTTGGCATT
135021873 CTTGTGTTTACAA-G
641 CTTGTGTTTACAAGG
*
135021887 GAGCGAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
*
135021952 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTC-----
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
*
135022012 -GA-C-G---G-AG----AGCAGATCTGTCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * *
135022066 GATTTAGAATTCTTGTGTTTACAAGGAGTAAGTTGAAGACATAGCAGATCTGAGCTTCAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * *
135022131 TACACTGAAGCAGGTCCAAGATGATTTGGTATCTCTATATTGTCAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
135022196 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * *
135022261 TTTCACATCGAAGCAGATCCAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGAC
* * *
135022326 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGGTCCAAGATGATTTGGTATCTTTATAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC-TTGTAT
* * *
135022391 TGT-CAGAGAACAAATCGAAGAAACAGATTTTGCATCC-CCATATTCGA-TGGAGAGCAGATCGA
520 TCTACAGAGAGCAAATCGAAGAAACAGATTTGGCA-CCTCCATATTC-ACTGGAGAGCAGATCGA
* * *
135022453 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
583 AGA-AT---AGATCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTC
135022518 TTGTGTTTACAA-G
642 TTGTGTTTACAAGG
* * *
135022531 GAGCAAATCGAAGACAGAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135022596 TTGGCATCTCTGTATTGTGAGA-AAAAAATCGAAGAAATAGGTTTGGCATCTCTATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* *
135022660 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135022725 GATTT-GAATTCTTGTGTTTACAAGGAGAAAATCGAAGACATAACAGATCTGACCTTCAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
*
135022789 TACACTGAAGCAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135022854 AATTTGGCATCTTCATATTTGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTT-GATTG
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGA-TG
* * ** *
135022918 TTTTCACATCAAAGCAAAGACAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGA
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* * * * * *
135022983 CATAGTAGATCTGACCTTCAGGTGTTCACACTGAAGTAGATCTAAGATGATTT--TA-C--ATA-
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTTGTAT
* * * * * * *
135023042 TCT---GAGAACAAATTGAATAAATAGATTTGGCATCTACATATTCGAC-GGAGACCAGATCGAA
520 TCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGAA
* * * * *
135023103 GACATAGCAGATCTGACCTTCAGG-TGTTTACAC-TGAAGCAGATCCAAGATGATTTGGCA-TCT
584 GA-AT---AGATCTGACATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCATTCT
* *
135023165 CTGTATTGT-C-AGA
643 -TGTGTT-TACAAGG
* * * * * * *
135023178 GAACAAATCGAAGA-A-A-TAGATTTGGCATCTCTA--T-TTT-CGACGGAGAGCAGATCGAAGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCT-TC-AGGTGTTTAC-ACTGA-AGCAGATCCAAG-
** *** * * * * * * * * * *
135023236 CATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTGGGCAT-T
61 -AT-G-ATTTGGCATCTCT-G-TATTGTCAGA--GAA-AAAATCGAAGAAACAGATTTGGCATCT
** * * ** * * *
135023297 CTTTTGTTTAAAAG-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TG-TTT-ACATTG
118 C-CATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCG
* * * * **
135023358 AAGCATATCCAAGATGATTTGGCA-TCTCTGTATTGT--GAGAGAAAAAATCGAAGA-A-A-CAG
181 AAGCAGATCCAAGATGATTTAGCATTCT-TGTGTT-TACAAG-GAGCAAATCGAAGACATAGCAG
* * * * * * * * *
135023417 ATTTGGCATCTCCA--T-ATT-CGAC-GAAGAGGAGATCGAAGACATAGCAGATCT-G-ACCTTT
243 ATCT-G-ACCTTCAGGTGTTTAC-ACTG-A-AGCAGATCCAAG--AT----GATTTGGCATCTCT
* * * * * * * ** **
135023475 GGTTGTTTTCACATCGAAGAAGAT-GCAAG--A-TGATTTGGCAT-T-CTTGTGTTTACAAAGAG
297 -G-TATTGTCAGA--GAACAA-ATCG-AAGAAACAGATTTGGCATCTCCATAT-TCGACGGAGAG
* * * * *
135023534 CAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCAAAGATGAT
355 CAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
* * * * * * *
135023596 CTGGCA-TCTCTGTATTGT-C-A-GAGAACAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-
419 TTGGCATTCT-TGTGTT-TACAAGGAGCA-AATTGAAGACATAGCAGATCT-G-ACCTTCAGGTG
* * * * ** * * * * *
135023651 ATT-CGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCT-TTGGT-TGTTTTC--ACATCAA
479 TTTAC-ACTGA-AGCAGATCCAAG--AT----GATTTGGCATCTT-GTAT-TCTACAGAGAGCAA
* * * * ** * * ** *
135023711 AACAGATACAAGA-TGATTTGGCA-TTCTTGTTTTTACAAG-GAGCAAATCGAAGACATAGCAGA
534 ATC-GA-AGAA-ACAGATTTGGCACCTC-CATATTCACTGGAGAGCAGATCGAAGA-AT---AGA
* * * * * * * * *
135023773 TCTGACCTTCAGG-TGTTTACAC-TGAAGTAGATCCAACATGATTTGACA-TC-TGTTTATTGTC
591 TCTGACATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCATTCTTGTGT-TT-AC
*
135023834 -AGA
652 AAGG
** * * * * * ** * *
135023837 GAATAAATTGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGAGGGAGACCAGATCGAAGA
1 GAGCAAATCGAAGACATAGCAGATCT-G-ACCTTCAGGTGTTTAC-ACTGA-AGCAGATCCAAG-
* * * * * * * * * * *
135023895 CATAGCAGATCT-G-ACCTTTAGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTAGCAT
61 -AT----GATTTGGCATCTCT-G-TATTGTCAGA--GAA-AAAATCGAAGAAACAGATTTGGCAT
* * * * * * * *
135023955 -TCTTATGTTTACAA---AGACCAAATCGAAGACATAACAGATGTGACCTTCAGG-TGTTTACAC
116 CTC-CAT-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCAC
* * * *
135024015 -T-GAAGCAGATCCAAGATGATTTGGCATCTCTATAT-TGT-C-AGAGAACAAATCGAAGA-A-A
177 ATCGAAGCAGATCCAAGATGATTTAGCAT-TCT-TGTGTTTACAAG-GAGCAAATCGAAGACATA
* * * * * * * * *
135024073 -CAGATTTGGCATCTCCA--T-ATT-CAATGGAGGGCAGATCGAAGGCATAGCAGATCT-G-ACC
239 GCAGATCT-G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAA-G-AT----GATTTGGCATC
* * * * * * *** * *
135024131 TTTGTATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGCATTCTTGTGTTTTC-A-AG-
294 TCTGTA--TTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCA-TC-TCCATATTCGACGGA
* * * * * *
135024190 GAGCAAATCGAAGACATAGCAGATTTGACCTTCAGG-TGTTTACAC-T-GAAACAGATCTAAGAT
352 GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGAT
* ** * * * * * *
135024252 GATTTGGCA-TCTCTGTATTGT-C-AGAGAAAAAATCGAAGAAATAG-A-TTCGGTATCTCCA--
416 GATTTGGCATTCT-TGTGTT-TACAAG-GAGCAAATTGAAGACATAGCAGATCTG-ACCTTCAGG
* * * * * * * * * * *
135024310 TATTCA-ACGGAGAGCAGATCGAAGGCATAGCAGATCTGACCT-TTGGATGTTTGCATAACGAAG
477 TGTTTACACTGA-AGCAGATCCAA-G-AT----GATTTGGCATCTTGTAT-TCTACA-GA-G-AG
* * * ** * * * *
135024373 CAGATTC-AAG--A-TGATTTGGCA-TTCTTTTGTTTACAAT-G-G-GCAAATTGAAGACATAGC
531 CA-AATCGAAGAAACAGATTTGGCACCTC-CAT-ATT-CACTGGAGAGCAGATCGAAGA-AT---
* * * * * **
135024430 AGATCTGACCTTCAGG-TGTTTACAC-TGAAGTAGATCCAAGATGATTTGGCA-TCTCTGCATTG
588 AGATCTGACATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCATTCT-TGTGTT-
*
135024492 T-C-AGA
649 TACAAGG
** * * * * * *
135024497 GAAAAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGCAGATCGAAGG
1 GAGCAAATCGAAGACATAGCAGATCT-G-ACCTTCAGGTGTTTAC-ACTGA-AGCAGATCCAA-G
* * * * * * * *
135024555 TATAGCAAATCT-G-ACCTTTGGATGTTTTCACAACGAAGCAAACTC-AAG--A-TGATTTGGCA
61 -AT-G---ATTTGGCATCTCT-G-TATTGTCA-GA-GAA--AAAATCGAAGAAACAGATTTGGCA
** * * * * * ** * *
135024614 T-TCTTGTTTTTATAAGG-G-GAAAATTTAAGACATAGCAGATTTGACCTTCAGG-T-TTTT-AC
115 TCTC-CATATTCA-ATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCAC
* * * * * *
135024673 A-CTGAAGCAGATCCAGGATGATTTGGTATCTCTATAT-TGT-C-AGAGAACAAATCGAAGA-A-
177 ATC-GAAGCAGATCCAAGATGATTTAGCAT-TCT-TGTGTTTACAAG-GAGCAAATCGAAGACAT
* * * * * * * * *
135024732 A-CAGATTTGGCATCTCCA--TATTT-GACGGAGAGCAGATCAAAGACATAGCAGATCT-G-ACC
238 AGCAGATCT-G-ACCTTCAGGTGTTTACACTGA-AGCAGATCCAAG--AT----GATTTGGCATC
* * * * ** * * * * ** *
135024791 TTTGGATGTTTTCACATCGAAGCAGGTCCAAG--A-TGATTTGGCAT-T-CTTGTGTTTACATGA
294 TCT-G-TATTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGAC-GGA
* * * *
135024851 -AGCAAATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGAT
352 GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * ** *
135024912 GATTTGGCA-TCTCTGTAGTGTTA-GA-GAACAAATCAAAGA-A-A-CAGATTTGCATCTCAATA
416 GATTTGGCATTCT-TGT-GT-TTACAAGGAGCAAATTGAAGACATAGCAGATCTG-A-C-C----
** ** * * ** *
135024971 TTCGACGAAGAGTAGATTGAAGACA-AAGC-AGATCTGACCTTTGG-A---TGTTTTC-ACATCG
471 TTC-A-GGTGTTTACACTGAAG-CAGATCCAAGA--TGA--TTTGGCATCTTGTATTCTACA--G
* * * ** ** * * ** *
135025029 A-AGCAGATCCAAG--A-TGATTTGG-AATTCTTGTGTTTACAAG-GAGCAAATCGAAGACATAG
527 AGAGCAAATCGAAGAAACAGATTTGGCACCTC-CATATTCACTGGAGAGCAGATCGAAGA-AT--
* * * * * * *
135025088 CAGATCTGAGC-TTCAGG-TGTTTACAC-TGAAGCAGATCCAACATGATTTGACATCTCTT-TAT
588 -AGATCTGA-CATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCAT-TCTTGTGT
*
135025149 TGT-C-AGA
648 T-TACAAGG
** * * * * * * * *
135025156 GAATAAATTGAAGA-A-A-TAGATTTGGCATTTCCA--T-ATT-CGACGGAGAGCAGATCGAAGA
1 GAGCAAATCGAAGACATAGCAGATCTGAC-CTT-CAGGTGTTTAC-ACTGA-AGCAGATCCAAG-
* * * * * * * * *
135025214 CATAGCAGATCT-G-ACCTTTAGATGTTTTCACATCGAAGCAAATCCAAG--A-TGATTTGGCAT
61 -AT----GATTTGGCATCTCT-G-TATTGTCAGA--GAA-AAAATCGAAGAAACAGATTTGGCAT
* ** * * * * * * *
135025274 -T-CTTATGTTTACGAAGACCAAATCGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T
116 CTCCATAT-TCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACAT
* * * * *
135025335 -GAAGCAGATCCAAGATGATTTGGCA-TCTCTAT-ATTATC-AGAGAACAAATCGGAGA-A-A-C
179 CGAAGCAGATCCAAGATGATTTAGCATTCT-TGTGTTTA-CAAG-GAGCAAATCGAAGACATAGC
* * * * * * * * *
135025393 AGATTTGGCATCTCCA--T-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTT
241 AGATCT-G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAAG--AT----GATTTGGCATCTC
* * * * * * *** * * *
135025452 TGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGCAT-TTTGTGTT-TAC-AAGGAG
296 T-G-TATTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA-GAG
* ** * ** *
135025511 CAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGAT
355 CAGATCGAAGACATAGCAGATCTGACC-TTTGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
* * ** * * *
135025573 TTGGCA-TCTCCGTATTGT-C-AGAGAAAAAATTGAAGA-A-A-CAGATTTGGCATCTCCA--T-
419 TTGGCATTCT-TGTGTT-TACAAG-GAGCAAATTGAAGACATAGCAGATCT-G-ACCTTCAGGTG
* * * * * * * * *
135025629 ATT-CGACGGAGAACAGATCGAAGGCATAGCAAATCTGACCT-TTGGTTGTTTTCACA-ACGAAG
479 TTTAC-ACTGA-AGCAGATCCAA-G-AT-G---ATTTGGCATCTT-G-TATTCT-ACAGA-G-AG
* * * ** * * * *
135025691 CAGACTC-AAG--A-TGATTTGGCA-TTCTTGTGTTTA-TAAGG-G-GCAAATTGAAGACATAGC
531 CA-AATCGAAGAAACAGATTTGGCACCTC-CATATTCACT--GGAGAGCAGATCGAAGA-AT---
* * * * *
135025748 AGATCTGAGC-TTCAGG-TGTTTACAC-TGAAGCAGATCCAAGATGATTTGGCATCTCTT-TATT
588 AGATCTGA-CATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCAT-TCTTGTGTT
*
135025809 GT-C-AGA
649 -TACAAGG
* * * * * *
135025815 GAACAAATCG-A-ACA-AACAGATTTGACACTTCCA--T-ATT-CGACAGAGAGCAGATCGAAGG
1 GAGCAAATCGAAGACATAGCAGATCTGAC-CTT-CAGGTGTTTAC-ACTGA-AGCAGATCCAA-G
* * * * * * * * * *
135025873 CATAGCAGGTCT-G-ACCTTTGGATGTTTTCACATCGAAGTAGATCCAAG--A-TGATTTGGCAT
61 -AT-G-A--TTTGGCATCTCT-G-TATTGTCAGA--GAA-AAAATCGAAGAAACAGATTTGGCAT
** * * * * * * *
135025933 -TCTTGTGTTTACAA--G-GAGCAAATCAAAGACATAGTAGATTTGACCTTCAGG-TGTTTGCAC
116 CTC-CAT-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCAC
* * * * *
135025993 -T-GAAGCGGATCTAAGATGATTTGGCA-TCTTCGTATTCTCAGAGAGTGGATTGAAGAAACAGA
177 ATCGAAGCAGATCCAAGATGATTTAGCATTCTT-GTGTT-T-ACA-A---G---G-AG---CA-A
* * * * * *
135026055 TTTGGCATCTCCGTATTCGACGGAGAGCAAATCTGACCTT-TGGATGTTTTCACATCAAAGCAGA
227 ------A--T-CG-A--AGAC--ATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGA
* * * * ** * * *
135026119 TCAAAGATGATTTAGAAT-TCTTGTGTT-TACA-AGGAGTAAATTGAAGACATAGCCGATCT-G-
275 TCCAAGATGATTTGGCATCTC-TGTATTGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGC
* * * * * * * * * *
135026179 ACCTTCAGGTGTTTAC-ACTGA-AGCAGATCCAAG--AT----GATTTGGTATCTCT--ATATTG
334 ATCTCCA--T-ATT-CGACGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTT
* * * * * * ** * *
135026234 TCA-A-AGAA-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGAA-GAGCAGATCGA
393 TCACATCGAAGCAGATCCAAG--A-TGATTTGGCAT-T-CTTGTGTTTAC-AAGGAGCAAATTGA
* *
135026294 AGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATA
452 AGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCAT-
* * * * * *
135026358 CTTGTGTT-TACA-AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTTCAGGTGTTTACACT-
513 CTTGTATTCTACAGA-GAGCAAATCGAAGA-A-A-CAGATTTGGCACCTCCA--T-ATT-CACTG
* * * * * * * * * * * *
135026418 GA-AGCATATCCAAG-AT-GATTTGGCATCTCT-G-TATTGTGAGA-AAAAAAATCGAAGAAACA
570 GAGAGCAGATCGAAGAATAGATCTGACAT-T-TGGATGTTTTCACATGAGAAAATCCAAG--A-T
* * * * **
135026477 GGTTTGGC-CTCTCTAT-ATT-CGGCGG
630 GATTTGGCATTCT-TGTGTTTAC-AAGG
* * * * *
135026502 AGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGTTGTTTTCAAATCGAAGAAGATCCAAGA
1 -GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTAC-ACT-GAAGCAGATCCAAGA
* * ** * *
135026566 TGATTTTGCAT-TCTTGTGTT-TACA-AGGAGCAAATCGAAGACATAACAGATTT-G-ACCTTCA
62 TGATTTGGCATCTC-TGTATTGT-CAGA-GAAAAAATCGAAG--A-AACAGATTTGGCATCTCCA
* * * * * * * *
135026626 GGTGTTTACACT-GA-AGCAGATCCAAG--AT-G-A-A-CTGGCATCTCT-G-TATTGTCAGA--
121 --T-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATC
* * * * * * * * * *
135026679 GAA-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TTGAC-GGAGAGCAGATCGAGGACATA
180 GAAGCAGATCCAAG--A-TGATTTAGCAT-T-CTTGTGTTTACAAG-GAGCAAATCGAAGACATA
* * * *
135026741 GCAGATCTGCCCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT-TCTTGTG
239 GCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC-TGTA
* * * * * * * *
135026804 TT-TACA-AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTTCAGGTCTTTAC-ACTGA-AGC
300 TTGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGC
* * * * ** ** * *
135026863 ATATCCAAGATGATTTGGCATCTCTGTA--TTGTGAGA-G--AACAAATCG-A--AGA---AACA
356 AGATCGAAGA-CA--TAGCAGATCTG-ACCTT-TG-GATGTTTTCACATCGAAGCAGATCCAAGA
* ** * * * *
135026917 -GATTTGGCATTTCTATAT-TCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGG
415 TGATTTGGCA-TTCT-TGTGTTTACAAG-GAGCAAATTGAAGACATAGCAGATCTGACCTTCAGG
* * * * * * *
135026978 ATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAATTCTTGTGTT-TAC-GAGGAGTAAATT
477 -TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA-TCTTGTATTCTACAGA-GAGCAAATC
* * * * *
135027041 GAAGACATAGCAGATCT--AACCTTCAGGTGATTACACT-GA-A-CAGATCCAAG-AT-GATTTG
537 GAAGA-A-A-CAGATTTGGCACCTCCA--T-ATT-CACTGGAGAGCAGATCGAAGAATAGATCTG
* * * * * * **
135027099 GCATCTCTGTAT-TGTT-AGA-GA-ACAAATCGAAGAAACAGATTTGGCA-TCTCCAT-TTT-CG
595 ACAT-T-TGGATGTTTTCACATGAGA-AAATCCAAG--A-TGATTTGGCATTCT-TGTGTTTAC-
*
135027157 ATGG
652 AAGG
* * * * * *
135027161 AGAGTAGATCGAAGACATAGTAGATCTGACCTT-TGGATGTTTTCACATCAAAGCAGATCCAAGA
1 -GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
* ** * * *
135027225 TGATTGGGCAT-TCT-T-TTGTTTACA-AGGAGCAAATCGAAGACATAGCAGATCT-G-ACCTTC
62 TGATTTGGCATCTCTGTATTG--T-CAGA-GAAAAAATCGAAGA-A-A-CAGATTTGGCATCTCC
* * * * * * * * * * *
135027284 AGGTGTTTACATTGA-AGCATATCCAAG--AT----GATTTGGCATCTCTGTAT-TGTT-AGA--
120 A--TATTCA-ATGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATC
* * * * * ** * * *
135027338 GAA-AAAATCGAAGAAACAGATTTGGCA-TCTCCAT-ATT-CGATGGAG-AGTAGATCGAAAACA
180 GAAGCAGATCCAAG--A-TGATTTAGCATTCT-TGTGTTTAC-AAGGAGCA--A-ATCGAAGACA
* * * *
135027398 TCGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATCTCTGT
237 TAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTCTGT
* * * * * * *
135027462 AGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTAGATTGAA
299 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
* *
135027526 GACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATTCT
364 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
* *
135027591 TGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAG
429 TGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
* * * * ** * * **
135027656 ATCCAACATGATTTGACATCTCTTTATTGT-CAGAGAATAAATTGAAGAAATAGATTTGGCATTT
494 ATCCAAGATGATTTGGCATCT-TGTATTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCT
* *
135027720 CCATATTCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGA
558 CCATATTC-ACTGGAGAGCAGATCGAAGA-AT---AGATCTGACATTTGGATGTTTTCACAT-G-
* *
135027784 AGCAAATCCAAGATGATTTGGCATTCTTATGTTTACGAA--
616 AGAAAATCCAAGATGATTTGGCATTCTTGTGTTTAC-AAGG
* * *
135027823 GACCAAATTGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * *
135027888 TTGGCATCTCTGTATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
135027953 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* ** * *
135028018 GATTTGGCATT-TTGTGTTTACAAGGAGCAAATCGAAGACATATTAGATTTGACCATCAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * *
135028082 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCCGTATTGTCAGAGAAAAAATTGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * * *
135028147 GATTTGGCATCTCCATATTCGACGGAGAACAGATCGAAGGCATAGCAAATCTGACCTTTGGTTGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * *
135028212 TTTCACAACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTATAAGGGGCAAATTGAAGA
391 TTTCACATCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* *
135028276 CATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTTTA
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTA
* * * * * *
135028341 TTGT-CAGAGAACAAATCGAACAAACAGATTTGACACTTCCATATTCGAC-AGAGAGCAGATCGA
519 TTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGA
* * * *
135028404 AGGCATAGCAGGTCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATTC
583 A-GAATAG-A--TCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTC
135028469 TTGTGTTTACAA-G
642 TTGTGTTTACAAGG
* * * * * *
135028482 GAGCAAATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* **** * *
135028547 TTGGCATCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCGTATTC----
66 TTGGCATCTCT-GTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATG
* * *
135028607 --GA-C-G---G-AG----AGCAAATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * * *
135028660 TGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCCGATCTGACCTTCAGGTGT
195 TGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGT
* * *
135028725 TTACACTGAAGCAGATCCAAGATGATTTGGTATCTCTATATTGTCAAAGAACAAATCGAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
*
135028790 AGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* **
135028855 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATACTTGTGTTTACAAGGAGCAAATCAAAGA
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* *
135028920 CATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTA
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTA
* * * ** * * *
135028985 TTGT-GAGAAAAAAAATCGAAGAAACAGGTTTGGC-CTCTCTATATTCGGC-GGAGAGCAGATCG
519 TTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCAC-CTCCATATTC-ACTGGAGAGCAGATCG
* * * * *
135029047 AAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTTGCATT
582 AAGA-AT---AGATCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATT
135029112 CTTGTGTTTACAA-G
641 CTTGTGTTTACAAGG
* * *
135029126 GAGCAAATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * ** *
135029191 CTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* *
135029256 AGAGCAGATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * *
135029321 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTCTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* *
135029386 TACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135029451 GATTTGGCATTTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATAT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * * *
135029516 TTTCACATCGAAGTAGATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGAC
* *
135029581 ATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCATCTCTGTAT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTAT
* * * * * *
135029645 TGT-TAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGA-TGGAGAGTAGATCGAA
520 TCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGAA
* * *
135029708 GACATAGTAGATCTGACCTTTGGATGTTTTCACATCA-AAGCAGATCCAAGATGATTGGGCATTC
584 G--A-A-TAGATCTGACATTTGGATGTTTTCACATGAGAA--A-ATCCAAGATGATTTGGCATTC
*
135029772 TTTTGTTTACAA-G
642 TTGTGTTTACAAGG
* *
135029785 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135029850 TTGGCATCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * * * *
135029915 AGAGTAGATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * * * *
135029980 GATTTGGCA-TCTCTGTAGTGTTA-GA-GAACAAATCAAAGA-A-A-CAGATTTG-CATCTCA-A
196 GATTTAGCATTCT-TGT-GT-TTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCT-TCAGG
* * * * * * * * * * * *
135030037 TATTCGACGAAGAGTAGATTGAAGA-CAAAGCA-GATCT-G-ACCTTTGGATGTTTTCACATCGA
257 TGTT-TAC----ACT-GA-AGCAGATCCAAG-ATGATTTGGCATCTCT-G-TATTGTCAGA--GA
* * * * * * ** * *
135030098 AGCAGATCCAAG--A-TGATTTGGAAT-T-CTTGTGTTTAC-AAGGAGCAAATCGAAGACATAGC
310 A-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGA-GAGCAGATCGAAGACATAGC
* * * * * *
135030157 AGATCTGAGCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAACATGATTTGACATCTCTT-TATT
372 AGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT-TCTTGTGTT
** * * * * * *
135030218 GT-C-AGAGAATAAATTGAAGA-A-A-TAGATTTGGCATTTCCA--T-ATT-CGACGGAGAGCAG
435 -TACAAG-GAGCAAATTGAAGACATAGCAGATCTGAC-CTT-CAGGTGTTTAC-ACTGA-AGCAG
* * * * * * * *
135030274 ATCGAAGACATAGCAGATCTGACCT-TTAGATGTTTTCACATCGA-AGCAAATCCAAG--A-TGA
494 ATCCAAG--AT----GATTTGGCATCTT-G-TATTCT-ACA--GAGAGCAAATCGAAGAAACAGA
* * * * * * * * *
135030334 TTTGGCA-TTCTTATGTTTAC-GAAGACCAAATCGAAGACATAACAGATCTGACCTTCAGG-TGT
548 TTTGGCACCTC-CATATTCACTGGAGAGCAGATCGAAGA-AT---AGATCTGACATT-TGGATGT
* * * * *
135030396 TTACAC-TGAAGCAGATCCAAGATGATTTGGCA-TCTCTGT-ATTATC-AGA
607 TTTCACATG-AGAAAATCCAAGATGATTTGGCATTCT-TGTGTTTA-CAAGG
* * * * * * * *
135030444 GAACAAATCGGAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CAATGGAGAGCAGATCGAAGA
1 GAGCAAATCGAAGACATAGCAGATCT-G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAAG-
* * * * * * * * * *
135030502 CATAGCAGATCT-G-ACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGCAT
61 -AT----GATTTGGCATCTCT-G-TATTGTCAGA--GAA-AAAATCGAAGAAACAGATTTGGCAT
*** * * ** * ** *
135030562 -TTTGTGTTTACAA--G-GAGCAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACAC-
116 CTCCAT-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCTGACC-TTTGGATGTTTTCACA
* * * ** *
135030621 T-GAAGCAGATCCAAGATGATTTGGCA-TCTCCGTATTGT-C-AGAGAAAAAATTGAAGA-A-A-
178 TCGAAGCAGATCCAAGATGATTTAGCATTCT-TGTGTT-TACAAG-GAGCAAATCGAAGACATAG
* * * * * * * * *
135030679 CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAACAGATCGAAGGCATAGCAAATCT-G-ACCT
240 CAGATCT-G-ACCTTCAGGTGTTTAC-ACTGA-AGCAGATCCAA-G-AT-G---ATTTGGCATCT
* * * * * * ** * ** *
135030738 TTGGTTGTTTTCACAACGAAGCAGACTC-AAG--A-TGATTTGGCAT-TCTTGTGTTTATAAGG-
295 CT-G-TATTGTCA-GA-GAA-CA-AATCGAAGAAACAGATTTGGCATCTC-CAT-ATTCGACGGA
* * * * *
135030797 G-GCAAATTGAAGACATAGCAGATCTGAGCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGAT
352 GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * *
135030858 GATTTGGCATCTCTT-TATTGT-C-AGAGAACAAATCG-A-ACA-AACAGATTTGACACTTCCA-
416 GATTTGGCAT-TCTTGTGTT-TACAAG-GAGCAAATTGAAGACATAGCAGATCTGAC-CTT-CAG
* * * * * * * *
135030916 -T-ATT-CGACAGAGAGCAGATCGAAGGCATAGCAGATCTGACCT-TTGGATGTTTTCACATCGA
476 GTGTTTAC-ACTGA-AGCAGATCCAA-G-AT----GATTTGGCATCTT-G-TATTCT-ACA--GA
* * * * * ** * * ** * *
135030977 -AGTAGATCCAAG--A-TGATTTGGCA-TTCTTGTGTTTACAAG-GAGCAAATCAAAGACATAGT
528 GAGCAAATCGAAGAAACAGATTTGGCACCTC-CATATTCACTGGAGAGCAGATCGAAG--A-A-T
* * * * *** * *
135031036 AGATTTGACCTTCAGG-TGTTTGCAC-TGAAGCGGATCTAAGATGATTTGGCA-TCTTCGTATTC
588 AGATCTGACATT-TGGATGTTTTCACATG-AGAAAATCCAAGATGATTTGGCATTCTT-GTGTT-
*
135031098 TCAGAGAGTGG
649 T-ACA-A--GG
* * * * *
135031109 ATTGAAGAAACAGATTTGGCATCTCCGTATTCGACGGAGAGCAAATCTGACCTT-TGGATGTTTT
1 ---G-AG---CA-A------A--T-CG-A--AGAC--ATAGCAGATCTGACCTTCAGG-TGTTTA
* * * * * ** *
135031173 CACATCAAAGCAGATCAAAGATGATTTAGAAT-TCTTGTGTT-TACA-AGGAGTAAATTGAAGAC
43 CAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC-TGTATTGT-CAGA-GAAAAAATCGAAGA-
* * * * * * * *
135031235 ATAGCCGATCT-G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAAG--AT----GATTTGGT
102 A-A-CAGATTTGGCATCTCCA--T-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCT-G-
* * * * * * * * * * * **
135031290 ATCTCT--ATATTGTCA-A-AGAA-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACG
159 ACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTAGCAT-T-CTTGTGTTTAC-
* * *
135031349 AA-GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAA
218 AAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAA
* * * * * * *
135031412 GATGATTTGGCATACT-TGTGTT-TACA-AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTT
280 GATGATTTGGCAT-CTCTGTATTGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTC
* * * * * * ** *****
135031472 CAGGTGTTTAC-ACTGA-AGCATATCCAAGATGATTTGGCATCTCTG---TATTGTGA-GAAAAA
339 CA--T-ATT-CGACGGAGAGCAGATCGAAGA-CA--TAGCAGATCTGACCT-TTG-GATGTTTTC
* * * * *** * * *
135031531 AAATCGAAG-A-A-AC-AG--G-TTTGGCCTCTCTATAT-TCGGC-GGAGAGCAGATCGAAGACA
395 ACATCGAAGCAGATCCAAGATGATTTGGCAT-TCT-TGTGTTTACAAG-GAGCAAATTGAAGACA
* * * * *
135031587 TAGCAGATCTGACCTT-TGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTTGCATTCTTGT
457 TAGCAGATCTGACCTTCAGG-TGTTTAC-ACT-GAAGCAGATCCAAGATGATTTGGCA-TCTTGT
* * *
135031651 GTT-TACA-AGGAGCAAATCGAAGACATAACAGATTT-G-ACCTTCAGGTGTTTACACT-GA-AG
518 ATTCTACAGA-GAGCAAATCGAAG--A-AACAGATTTGGCACCTCCA--T-ATT-CACTGGAGAG
* * * * * * * *
135031710 CAGATCCAAG-AT-GAACTGGCATCTCT-G-TATTGTCAGA-GA-ACAAATCGAAGAAACAGATT
575 CAGATCGAAGAATAGATCTGACAT-T-TGGATGTTTTCACATGAGA-AAATCCAAG--A-TGATT
* * *
135031769 TGGCATCTCCATAT-TTGAC--GG
634 TGGCAT-T-CTTGTGTTTACAAGG
* * * * *
135031790 AGAGCAGATCGAGGACATAGCAGATCTGCCCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGA
1 -GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
* ** * * * * *
135031854 TGATTTGGCAT-TCTTGTGTT-TACA-AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTTCA
62 TGATTTGGCATCTC-TGTATTGT-CAGA-GAAAAAATCGAAGA-A-A-CAGATTTGGCATCTCCA
* * * * * * ** **
135031914 GGTCTTTACACT-GA-AGCATATCCAAGATGATTTGGCATCTCTGTA--TTGTGAGA-G--AACA
121 --T-ATT-CAATGGAGAGCAGATCGAAGA-CA--TAGCAGATCTG-ACCTT-TG-GATGTTTTCA
* * * * ** * *
135031972 AATCG-A--AGA---AACA-GATTTGGCATTTCTATAT-TCGAC-GGAGAGCAGATCGAAGACAT
176 CATCGAAGCAGATCCAAGATGATTTAGCA-TTCT-TGTGTTTACAAG-GAGCAAATCGAAGACAT
* * * * *
135032028 AGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAAT-TCTTGT
238 AGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC-TGT
* ** * * * * * *
135032091 GTT-T-ACGAGGAGTAAATTGAAGACATAGCAGATCT--AACCTTCAGGTGATTAC-ACTGA-A-
299 ATTGTCA-GA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAG
* * * * * * * * *
135032149 CAGATCCAAG--AT----GATTTGGCATCTCTGTAT-TGTT-AGA--GAA-CAAATCGAAGAAAC
355 CAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--A-
* ** * * * *
135032203 AGATTTGGCA-TCTCCAT-TTT-CGATGGAG-AGTAGATCGAAGACATAGTAGATCTGACCTT-T
415 TGATTTGGCATTCT-TGTGTTTAC-AAGGAGCA--A-ATTGAAGACATAGCAGATCTGACCTTCA
* * * * *
135032263 GGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGGCATTCTTTTGTT-TACA-AGGAGCAAA
475 GG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA-TCTTGTATTCTACAGA-GAGCAAA
* * * * * * * *
135032326 TCGAAGACATAGCAGATCT-G-ACCTTCAGGTGTTTACATTGA-AGCATATCCAAG-AT-GATTT
535 TCGAAGA-A-A-CAGATTTGGCACCTCCA--TATTCAC-TGGAGAGCAGATCGAAGAATAGATCT
* * * * * * * * * **
135032386 GGCATCTCTGTAT-TGTT-AGA-GAAAAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGAC
594 GACAT-T-TGGATGTTTTCACATGAGAAAATCCAAG--A-TGATTTGGCAT-T-CTTGTGTTTAC
135032447 GAA--
652 -AAGG
* * * * * * *
135032450 GAGTAGATCGAAAACATCGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGAT
* ** * * * *
135032514 GATTTGGCAT-TCTTGTGTT-TACCAG-GAGCAAATCGAAGACATAACAGATCTGACCT-TCAGA
63 GATTTGGCATCTC-TGTATTGT--CAGAGAAAAAATCGAAG--A-AACAGATTTGGCATCTC-CA
* * * * * * * * *
135032575 TGTTTACACT-GA-AGTAGATCCAAG--AT----GATCTGGCATCTCT-G-TATTGTCAGA--GA
121 T-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATCGA
* ** * * ** * * *
135032628 A-CAAATTGAAGAAATAGATTTGGTA-TCTCCAT-ATT-CGACGGATAGCAGATCGAAGACATAG
182 AGCAGATCCAAG--AT-GATTTAGCATTCT-TGTGTTTAC-AAGG--AGCAAATCGAAGACATAG
* * * * * * * *
135032689 CAGATTTAAGCTT-TGGATGTTTTCAAATCGAAGCAGATTCAAGATGATTTGGCAT-TCTTGTGT
240 CAGATCTGACCTTCAGG-TGTTTAC-ACT-GAAGCAGATCCAAGATGATTTGGCATCTC-TGTAT
* * * * * ** * * *
135032752 T-TACA-AGGAGCAAATTGAAAACATAGCAGATCT-G-ACCTTAAGGTGTTTAC-AC-TAAAGCA
301 TGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGCA
* * * * * * * *
135032811 GATCCAAG--AT----GATTTGACATCTCT-G-TATTGTCAGA--GAA-CAAATCGAAGAAATAG
357 GATCGAAGACATAGCAGATCTGAC--CTTTGGATGTTTTCACATCGAAGCAGATCCAAG--AT-G
* * ** * *** * * * * *
135032865 ATCTGACA-TCTCCATATTTATGGGAGAGCAGATCGAAGACATAGTAGATCTAACCTT-TGGATG
417 ATTTGGCATTCT-TGTGTTTACAAG-GAGCAAATTGAAGACATAGCAGATCTGACCTTCAGG-TG
* * *
135032928 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT-TACA-AGAAGCAAATTGAA
479 TTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA-TCTTGTATTCTACAGAG-AGCAAATCGAA
* * * * * *
135032991 GACATAACAAATCT-G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAAG-AT-GATCTGGCA
540 G--A-AACAGATTTGGCACCTCCA--T-ATT-CACTGGAGAGCAGATCGAAGAATAGATCTGACA
* * * * * * *
135033050 TCT--CTGTATTGC-CA-GAGAACAAATCGAAGAAACAGATTTGGCATCTCTATAT-TTGACGAA
598 TTTGGATGT-TTTCACATGAG-A-AAATCCAAG--A-TGATTTGGCAT-TCT-TGTGTTTAC-AA
135033110 --
654 GG
* * * * * * * *
135033110 GAGTAGATTGAAGACATAGAAGATATGACCTT-TGGATGTTTTCGCATCGAAGCAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGAT
* ** * * * * * * ***
135033174 GATTT-GCAT-TCTTGTGTT-TACA-AGGAGCAAATCGAATACATAGCGGATCTGACCTTTAGGT
63 GATTTGGCATCTC-TGTATTGT-CAGA-GAAAAAATCGAAGA-A-A-CAGATTTGGCATCTCCAT
* * * * * * ** * *
135033235 GTTTACACT-GA-AGCAGATCTAAG--AT----GATTTTACATATCT-GA-G-AAT-AAAT---T
122 -ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCT-T-TGGATGTTTTCACATCGAA
* ** * * * * *
135033285 G-A-AT--AA-ATAGATTTGGCA-TCTCCAT-ATT-CGACGGAGAGAAGAACGAAGACATAGTAG
183 GCAGATCCAAGAT-GATTTAGCATTCT-TGTGTTTAC-AAGGAG-CAA-ATCGAAGACATAGCAG
* * * * *
135033342 ATCTGACCTTCAGGTGTTTACACTGAAGTAAATTCAAGATGATTTGGCATCACTTTATTGTCAGA
243 ATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGA
* ** *
135033407 GAATAAATCGAAGAAACAGATTCAGCATCTCCATATTCGACGGAGAGCAGATCGAAGGCATAGCA
308 GAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
* * ** * * *
135033472 GATCTGACCTTTGGATGTTTGCATAAT-GAAGCAGAAACAAGATTATTTGACATTGTTGTGTTTA
373 GATCTGACCTTTGGATGTTTTCA-CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
* * * * * * * *
135033536 CAAGGAGAAAATCGAAGACATAGCCGATCTTACCTTTAGGTGTTTACACTGAAGTAAAGCCAAGA
437 CAAGGAGCAAATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGA
* ** * * *
135033601 TGATTTGGCATCTCTGTATTGT-CAGAGAGCGGATTGAAGAAACAAATTTGGCATCTCCATATTT
502 TGATTTGGCATCT-TGTATTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATA-TT
* * * * * ** *
135033665 GAC-GGAAAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCCTACCAGATC
565 CACTGGAGAGCAGATCGAAGA-AT---AGATCTGACATTTGGATGTTTTCACAT--GAGAAAATC
*
135033729 CAAGATGATTTGGCATTCTTGTGTATACAA-G
624 CAAGATGATTTGGCATTCTTGTGTTTACAAGG
*
135033760 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135033825 TTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGAAACATATTTGGCATCTCTATATTCGATGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * * * * ** *
135033890 GGAGAAGATCGAAGACATAGCAGATTTGACCTTTGGACGATTTCACATCGAATTAGATCCAAAAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * * * **
135033955 GATTTGGCATTATTGTGTTTACAAGAAGCAAATCGAAGACATTGCAAATCTGACCTTTAATTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * *
135034020 TACTCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * * *
135034085 GATTTGTCATCCCCATATTCGACGGAGA-CTAGATCGAAGACATAACAGATCTAACCTTTGGATG
326 GATTTGGCATCTCCATATTCGACGGAGAGC-AGATCGAAGACATAGCAGATCTGACCTTTGGATG
** **
135034149 TTTTCACATCGAAGCAGATTAAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCAAAGA
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* * * * *
135034214 CATATCAAATTTGACCTTCAGGTGTTTACACTGTAGCGGATCCAAGATGATTTGGCATCTCTGTA
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTA
* * ** * * * *
135034279 TTGT-CAGAGAACGGATTGAAGAAACAGATTTGGCATCTCCATATTCGAC-GGAGGGTAGATCGA
519 TTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGA
* * * * * *
135034342 AGACATAGCAGATCTGACCTTTGGATGTTTTCAAATCA-AAGCAGGTCTAAGATGATTTGGCTTT
583 AGA-AT---AGATCTGACATTTGGATGTTTTCACATGAGAA--A-ATCCAAGATGATTTGGCATT
135034406 CTTGTGTTTACAA-G
641 CTTGTGTTTACAAGG
* * *
135034420 GAGCAAATCGAATG-CATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGA
1 GAGCAAATCGAA-GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGA
* * * *
135034484 TTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCACCATATTCGACG
65 TTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATG
* * * *
135034549 GAGAGCAGATCGAAGAGATAGCAGATCCGACCTTTGGATGTTGTCACATAGAAGCAGATCCAAGA
130 GAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
* * *
135034614 TGATTT-GCATTCTTGTGTTTACAAGGTGCAAATCGAAGAAATAGTAGATCTGACCTTCAGGTGT
195 TGATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGT
*
135034678 TTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
260 TTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAAC
* * *
135034743 AGATTTGGCATCCCCATATTCGACGAAGAACAGATCGAAGACATAGCAGATCTGACCTTTGGATG
325 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATG
* * ** * *
135034808 TTTTCACATCAAAGCAAAAACAAGATTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGA
390 TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* * *
135034873 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCTAAAATGATTTGGCATCTCTGTA
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTA
* ** * * *
135034938 TTGT-CAGAGAGCGGATTGAAGAAACAGATTTGGCATCTCCATATTTGAC-GGAGAGCAGATCGA
519 TTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATA-TTCACTGGAGAGCAGATCGA
* * *
135035001 AGACCTAGTAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
583 AGA---A-TAGATCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTC
135035066 TTGTGTTTACAA-G
642 TTGTGTTTACAAGG
* * *
135035079 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTATACTAAAGCAGATCCAAGATAAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * * *
135035144 TTGGCATCTCTGTATTGTCAGTGAACAAATCGAAGAAACAGATCTGACATCTCCATATTCAAGGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
** * * * *
135035209 AGAGCAGATCGAAGACATATTATATCTAACCTTTGGATGTTTTCACATCAAAGCAGGTCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * *
135035274 GATTTTGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGATCTGACCTTAAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
*
135035339 TACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135035404 GATTTGGCATCCCCATATTCGACGGAGAGCAGATCGAAGACATAACAGATCTGATCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* ** * *
135035469 TTTCACATCAAAGCAGAAACAAGATTG-TTTCGCATTCTTGTGTTTACAAGGAGCAAATCGAAGA
391 TTTCACATCGAAGCAGATCCAAGA-TGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* *
135035533 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAAATGATTTGGCATCTCTGTA
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCT-TGTA
* ** * * * * *
135035598 TTGT-CAGAGAGCGGATTGAAGAAACAGATTTGGCATCTCCATATTTGA-TGGAGAGCAAATCAA
519 TTCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATA-TTCACTGGAGAGCAGATCGA
* * *
135035661 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
583 AGA-AT---AGATCTGACATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTC
135035726 TTGTGTTTACAA-G
642 TTGTGTTTACAAGG
** * * *
135035739 GAGTGAATCGAAGACATAGTAGATTTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135035804 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * ** * *
135035869 AGAGTAGATCAAAGATGTACCAGGTCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* *
135035934 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTAACCTTCAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* ** *
135035999 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCCGTATTGTCAGAGAACGGATTGAAGAAACA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* *
135036064 GATTTGGCATCTCCATATTCGACGGAAAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
* * * * *
135036129 TTTCACATCTAAGCAGGTCCAAGATGATTTGGCTTTCTTGTGTTTACAAGGAGCAAATCGAATAC
391 TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGAC
* * * * *
135036194 ATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATTATTTGGCATC-TCTATT
456 ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTTGTATT
* * * * * * *
135036258 TTGTCAG-GAACAAATCGAAGAAACAGATTTGGCATCACCATAGTCGAC-GGAGAGTAGATCGAA
521 CT-ACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGAA
* * * * *
135036321 GACATAGCAGATCCGACCA-TTGGATGTTGTCACATCGAAGCAGATCCAAGATGATTTTGCATTC
584 GA-AT---AGATCTGA-CATTTGGATGTTTTCACAT-G-AGAAAATCCAAGATGATTTGGCATTC
135036385 TTGTGTTTACAA-G
642 TTGTGTTTACAAGG
* *
135036398 GTGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* * * *
135036463 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGG
66 TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
* * *
135036528 AGAGTAGATAGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGAT
131 AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
* * * * *
135036593 GATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGGCATAGTAGATCTGACCTTTAGGTGTT
196 GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
* * * *
135036658 TACACTGAAGCAGATCCTAGATGATTTGGCATCTCTGTATTGTTAGAGAATAAATCGAAGAAATA
261 TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
* * *
135036723 GATTTGGCATCTCCATATTCGATGGAGGGCAGATCGAAGACATTGCAGATCTGACCTTTGGATGT
326 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
*
135036788 TTTCACATCGAAGCAGATCCAAGA-GTATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGA
391 TTTCACATCGAAGCAGATCCAAGATG-ATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGA
* * * * * * *
135036852 CACAGTAGATCTAACCTTCAGTTTTTTACACTAAAGCAAATCCAAGATGATTT-G-A-C----A-
455 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTTGTAT
* ** * * * * *
135036909 TCT-CTGAGAATAAATTGAATAAACAGATTTGGCATCTCCATATTCGA-GGGAGAGTAGATCGAA
520 TCTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTC-ACTGGAGAGCAGATCGAA
* * * * * * *
135036972 GACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCCAAGATGATTTTGCATCCT
584 GA-AT---AGATCTGACATTTGGATGTTTTCACA-TG-AGAAAATCCAAGATGATTTGGCATTCT
135037037 TGTGTTTACAA-G
643 TGTGTTTACAAGG
* * *
135037049 GAGCAAATCAAAGACATAGCAGATCTGACCTTCATGTGTTTACACTGAAGCAAATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
* *
135037114 TTGACATCTCTATATTGTCA
66 TTGGCATCTCTGTATTGTCA
135037134 AGGAACGAAT
Statistics
Matches: 13546, Mismatches: 1984, Indels: 2083
0.77 0.11 0.12
Matches are distributed among these distances:
640 2 0.00
641 4 0.00
642 2 0.00
643 100 0.01
644 1063 0.08
645 71 0.01
646 51 0.00
647 81 0.01
648 172 0.01
649 170 0.01
650 207 0.02
651 329 0.02
652 77 0.01
653 35 0.00
654 69 0.01
655 54 0.00
656 111 0.01
657 106 0.01
658 681 0.05
659 4624 0.34
660 4105 0.30
661 269 0.02
662 158 0.01
663 35 0.00
664 30 0.00
665 45 0.00
666 14 0.00
667 11 0.00
668 16 0.00
669 12 0.00
670 7 0.00
672 4 0.00
673 2 0.00
675 4 0.00
678 4 0.00
679 4 0.00
681 5 0.00
682 5 0.00
683 18 0.00
684 71 0.01
685 86 0.01
686 47 0.00
687 111 0.01
688 83 0.01
689 58 0.00
690 92 0.01
691 117 0.01
692 54 0.00
693 50 0.00
694 20 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (655 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGG
AGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGAT
GATTTAGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTT
TACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGT
TTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAGAC
ATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTTGTATT
CTACAGAGAGCAAATCGAAGAAACAGATTTGGCACCTCCATATTCACTGGAGAGCAGATCGAAGA
ATAGATCTGACATTTGGATGTTTTCACATGAGAAAATCCAAGATGATTTGGCATTCTTGTGTTTA
CAAGG
Found at i:135021267 original size:89 final size:87
Alignment explanation
Indices: 135021138--135021298 Score: 216
Period size: 89 Copynumber: 1.8 Consensus size: 87
135021128 ATTCAATGGA
* * *
135021138 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGAAGATCCAAGATG
135021203 ATTTGGCATTCTTGTTTTTACAAG
64 ATTTGGCATTCTTGTTTTTACAAG
** * *
135021227 GAGCAAATCGAAGACATATTAGATTTGACCTTCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGAAGATCCAAGATGA
*
135021291 TTTTGCAT
65 TTTGGCAT
135021299 CTCTGTATTG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (87 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGAAGATCCAAGATGAT
TTGGCATTCTTGTTTTTACAAG
Found at i:135021325 original size:87 final size:89
Alignment explanation
Indices: 135021144--135021327 Score: 200
Period size: 87 Copynumber: 2.1 Consensus size: 89
135021134 TGGAGAGCAG
* *
135021144 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGAAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGAAGATCCAAGATGATTTGG
* **
135021209 CATTCTTGTTTTTACAAGGAGCAA
66 CATTCTTGTTTGTACAAGGAAAAA
** * * *
135021233 ATCGAAGACATATTAGATTTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGAAGATCCAAGATGATTTG
135021295 GCA-TCTCTGTATTGT-C-AGAGAAAAA
65 GCATTCT-TGT-TTGTACAAG-GAAAAA
135021320 ATCGAAGA
1 ATCGAAGA
135021328 AACAGATTTG
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
86 5 0.06
87 39 0.48
88 4 0.05
89 31 0.38
90 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGAAGATCCAAGATGATTTGG
CATTCTTGTTTGTACAAGGAAAAA
Found at i:135023484 original size:220 final size:220
Alignment explanation
Indices: 135023097--135027455 Score: 6520
Period size: 220 Copynumber: 19.9 Consensus size: 220
135023087 CGGAGACCAG
135023097 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135023162 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135023227 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135023292 GCATTCTTTTGTTTAAAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* *
135023317 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135023382 TCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGGA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135023447 GATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATGCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135023512 GCATTCTTGTGTTTACAAAGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135023537 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
135023602 TCTCTGTATTGTCAGAGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * * *
135023666 GATCGAAGACATAGCAGATCTAACCTTTGGTTGTTTTCACATCAAAACAGATACAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135023731 GCATTCTTGTTTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135023756 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * *
135023821 TCTGTTTATTGTCAGAGAATAAATTGAAGAAACAGATTTGGCATCTCCATATTCGAGGGAGACCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135023886 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTA
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135023951 GCATTCTTATGTTTACAAAGACCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* *
135023976 ATCGAAGACATAACAGATGTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135024041 TCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAATGGAGGGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135024106 GATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135024171 GCATTCTTGTGTTTTCAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135024196 ATCGAAGACATAGCAGATTTGACCTTCAGGTGTTTACACTGAAACAGATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135024261 TCTCTGTATTGTCAGAGAAAAAATCGAAGAAATAGATTCGGTATCTCCATATTCAACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * * *
135024326 GATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135024391 GCATTCTTTTGTTTACAATGG-GCAA
196 GCATTCTTGTGTTTACAA-GGAGCAA
* *
135024416 ATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* *
135024481 TCTCTGCATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
** * * *
135024546 GATCGAAGGTATAGCAAATCTGACCTTTGGATGTTTTCACAACGAAGCA-AACTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTT
* * * *
135024610 GGCATTCTTGTTTTTATAAGGGGAAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
** * * * *
135024636 ATTTAAGACATAGCAGATTTGACCTTCAGGTTTTTACACTGAAGCAGATCCAGGATGATTTGGTA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* *
135024701 TCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135024766 GATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135024831 GCATTCTTGTGTTTACATGAAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
*
135024856 ATCGAAGACATAGCAGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * *
135024921 TCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135024985 GATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135025050 GAATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135025075 ATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135025140 TCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135025205 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135025270 GCATTCTTATGTTTACGAA-GACCAA
196 GCATTCTTGTGTTTAC-AAGGAGCAA
*
135025295 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135025360 TCTCTATATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135025425 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135025490 GCATT-TTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
** * *
135025514 ATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135025579 TCTCCGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135025644 GATCGAAGGCATAGCAAATCTGACCTTTGGTTGTTTTCACAACGAAGCAGA-CTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTT
* *
135025708 GGCATTCTTGTGTTTATAAGGGGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* *
135025734 ATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135025799 TCTCTTTATTGTCAGAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGC
* * *
135025863 AGATCGAAGGCATAGCAGGTCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
135025928 GGCATTCTTGTGTTTACAAGGAGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * * * * *
135025954 ATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* **** * *
135026019 TCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCGTATTCGAC-----G-
66 TCTCT-GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGC
* *
135026077 -GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
* * *
135026132 AGAATTCTTGTGTTTACAAGGAGTAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * *
135026158 ATTGAAGACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135026223 TCTCTATATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135026288 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135026353 GCATACTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135026378 ATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * * *
135026443 TCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135026508 GATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135026573 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * **
135026598 ATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
135026663 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135026728 GATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135026793 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * *
135026818 ATCAAAGACATAGTAGATCTGACCTTCAGGTCTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135026883 TCTCTGTATTGTGAGAGAACAAATCGAAGAAACAGATTTGGCATTTCTATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135026948 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTA
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135027013 GAATTCTTGTGTTTACGAGGAGTAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135027038 ATTGAAGACATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135027102 TCTCTGTATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135027167 GATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135027232 GCATTCTTTTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* *
135027257 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135027322 TCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135027387 GATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135027452 GCAT
196 GCAT
135027456 CTCTGTAGTG
Statistics
Matches: 3722, Mismatches: 385, Indels: 64
0.89 0.09 0.02
Matches are distributed among these distances:
204 168 0.05
205 2 0.00
207 1 0.00
209 2 0.00
210 2 0.00
211 3 0.00
213 3 0.00
214 2 0.00
215 2 0.00
217 1 0.00
218 3 0.00
219 798 0.21
220 2728 0.73
221 7 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
GCATTCTTGTGTTTACAAGGAGCAA
Found at i:135023807 original size:659 final size:659
Alignment explanation
Indices: 135023097--135033391 Score: 9215
Period size: 659 Copynumber: 15.6 Consensus size: 659
135023087 CGGAGACCAG
135023097 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135023162 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCTATTTTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135023227 GATCGAAGACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135023292 GCATTCTTTTGTTTAAAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* * *
135023357 GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAAAAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * *
135023422 GCATCTCCATATTCGACGAAGAGGAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * * *
135023487 ATCGAAGAAGATGCAAGATGATTTGGCATTCTTGTGTTTACAAAGAGCAAATCGAAGACATAACA
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* *
135023552 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCAAAGATGATCTGGCATCTCTGTATTGTCAG
456 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
135023617 AGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
521 AGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
* * * * * *
135023682 GATCTAACCTTTGGTTGTTTTCACATCAAAACAGATACAAGATGATTTGGCATTCTTGTTTTTAC
586 GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
135023747 AAGGAGCAA
651 AAGGAGCAA
* * *
135023756 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * *
135023821 TCTGTTTATTGTCAGAGAATAAATTGAAGAAACAGATTTGGCATCTCCATATTCGAGGGAGACCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135023886 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAGATCCAAGATGATTTA
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * * * *
135023951 GCATTCTTATGTTTACAAAGACCAAATCGAAGACATAACAGATGTGACCTTCAGGTGTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
*
135024016 GAAGCAGATCCAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * * *
135024081 GCATCTCCATATTCAATGGAGGGCAGATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
*
135024146 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTTCAAGGAGCAAATCGAAGACATAGCA
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * *
135024211 GATTTGACCTTCAGGTGTTTACACTGAAACAGATCTAAGATGATTTGGCATCTCTGTATTGTCAG
456 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * * *
135024276 AGAAAAAATCGAAGAAATAGATTCGGTATCTCCATATTCAACGGAGAGCAGATCGAAGGCATAGC
521 AG-AACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * * * *
135024341 AGATCTGACCTTTGGATGTTTGCATAACGAAGCAGATTCAAGATGATTTGGCATTCTTTTGTTTA
585 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
135024406 CAATGG-GCAA
650 CAA-GGAGCAA
* *
135024416 ATTGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* *
135024481 TCTCTGCATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
** * * *
135024546 GATCGAAGGTATAGCAAATCTGACCTTTGGATGTTTTCACAACGAAGCA-AACTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTT
* * * * ** * *
135024610 GGCATTCTTGTTTTTATAAGGGGAAAATTTAAGACATAGCAGATTTGACCTTCAGGTTTTTACAC
195 GGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
* * *
135024675 TGAAGCAGATCCAGGATGATTTGGTATCTCTATATTGTCAGAGAACAAATCGAAGAAACAGATTT
260 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTT
* *
135024740 GGCATCTCCATATTTGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
325 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
* * *
135024805 CATCGAAGCAGGTCCAAGATGATTTGGCATTCTTGTGTTTACATGAAGCAAATCGAAGACATAGC
390 CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * *
135024870 AGATCTGGCCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTAGTGTTA
455 AGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
* * * * * *
135024935 GAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTAGATTGAAGACAAAG
520 GAGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
*
135024999 CAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTT
584 CAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTT
135025064 ACAAGGAGCAA
649 ACAAGGAGCAA
* * *
135025075 ATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135025140 TCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135025205 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135025270 GCATTCTTATGTTTACGAA-GACCAAATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACAC
196 GCATTCTTGTGTTTAC-AAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
* * *
135025334 TGAAGCAGATCCAAGATGATTTGGCATCTCTATATTATCAGAGAACAAATCGGAGAAACAGATTT
260 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTT
* *
135025399 GGCATCTCCATATTCAATGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
325 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
**
135025464 CATCGAAGCAGATCCAAGATGATTTGGCATT-TTGTGTTTACAAGGAGCAAATCGAAGACATATT
390 CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* * *
135025528 AGATTTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCCGTATTGTCA
455 AGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
135025593 GAGAAAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACAGATCGAAGGCATAG
520 GAG-AACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
* * *
135025658 CAAATCTGACCTTTGGTTGTTTTCACAACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTT
584 CAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTT
* *
135025722 TATAAGGGGCAA
648 TACAAGGAGCAA
* *
135025734 ATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135025799 TCTCTTTATTGTCAGAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGC
* * *
135025863 AGATCGAAGGCATAGCAGGTCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
* * * *
135025928 GGCATTCTTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCAC
195 GGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
* * * **** *
135025993 TGAAGCGGATCTAAGATGATTTGGCATCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATT
260 TGAAGCAGATCCAAGATGATTTGGCATCTCT-GTATTGTCAGAGAACAAATCGAAGAAACAGATT
*
135026057 TGGCATCTCCGTATTCGAC-----G--GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTC
324 TGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTC
* * * * * *
135026106 ACATCAAAGCAGATCAAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAG
389 ACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAG
* * *
135026171 CCGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTATCTCTATATTGTC
454 CAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTC
* *
135026236 AAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATA
519 AGAGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATA
*
135026301 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATACTTGTGTT
583 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT
135026366 TACAAGGAGCAA
648 TACAAGGAGCAA
* * *
135026378 ATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * * *
135026443 TCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135026508 GATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135026573 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
**
135026638 GAAGCAGATCCAAGATGAACTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * *
135026703 GCATCTCCATATTTGACGGAGAGCAGATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* *
135026768 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCAAAGACATAGTA
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * *
135026833 GATCTGACCTTCAGGTCTTTACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAG
456 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* *
135026898 AGAACAAATCGAAGAAACAGATTTGGCATTTCTATATTCGACGGAGAGCAGATCGAAGACATAGC
521 AGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * *
135026963 AGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTAGAATTCTTGTGTTTA
585 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
* *
135027028 CGAGGAGTAA
650 CAAGGAGCAA
* * *
135027038 ATTGAAGACATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135027102 TCTCTGTATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135027167 GATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135027232 GCATTCTTTTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* * *
135027297 GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * * *
135027362 GCATCTCCATATTCGATGGAGAGTAGATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * * *
135027427 ATCGAAGAAGATCCAAGATGATTTGGCA-TCTCTGTAGTGTTA-GA-GAACAAATCAAAGA-A-A
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCT-TGT-GT-TTACAAGGAGCAAATCGAAGACATA
* * * * * * * * * * *
135027487 -CAGATTTG-CATCTCA-ATATTCGACGAAGAGTAGATTGAAGA-CAAAGCA-GATCT-G-ACCT
453 GCAGATCTGACCT-TCAGGTGTT-TAC----ACT-GA-AGCAGATCCAAG-ATGATTTGGCATCT
* * * * * * * * * ** *
135027545 TTGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGAAT-T-CTTGTGTTTAC-AAGG
509 CT-G-TATTGTCAGA--GAA-CA-ATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGGA-G
* * * * *
135027604 AGCAAATCGAAGACATAGCAGATCTGAGCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAACATG
566 AGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATG
* * **
135027666 ATTTGACATCTCTT-TATTGT-C-AGAGAATAA
630 ATTTGGCAT-TCTTGTGTT-TACAAG-GAGCAA
* * * * * * * *
135027696 ATTGAAGA-A-A-TAGATTTGGCATTTCCA--T-ATT-CGACGGAGAGCAGATCGAAGACATAGC
1 ATCGAAGACATAGCAGATCTGAC-CTT-CAGGTGTTTAC-ACTGA-AGCAGATCCAAG--AT---
* * * * * * * * *
135027754 AGATCT-G-ACCTTTAGATGTTTTCACATCGAAGCAAATCCAAG--A-TGATTTGGCAT-T-CTT
57 -GATTTGGCATCTCT-G-TATTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCATCTCCAT
** * * * * * * *
135027812 ATGTTTACGAAGACCAAATTGAAGACATAACAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGC
116 AT-TCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGC
* * * *
135027874 AGATCCAAGATGATTTGGCA-TCTCTGT-ATTATC-AGAGAACAAATCGGAGA-A-A-CAGATTT
179 AGATCCAAGATGATTTGGCATTCT-TGTGTTTA-CAAG-GAGCAAATCGAAGACATAGCAGATCT
* * * * * * * * *
135027933 GGCATCTCCA--T-ATT-CAATGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATG
241 -G-ACCTTCAGGTGTTTACACT-GA-AGCAGATCCAAG--AT----GATTTGGCATCTCT-G-TA
* * * * * *** * * * *
135027992 TTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGCAT-TTTGTGTT-TAC-AAGGAGCAAATC
294 TTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGA-GAGCAGATC
** * ** *
135028051 GAAGACATATTAGATTTGACCATCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCA
355 GAAGACATAGCAGATCTGACC-TTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCA
* * ** * * * * *
135028113 -TCTCCGTATTGT-C-AGAGAAAAAATTGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CG
419 TTCT-TGTGTT-TACAAG-GAGCAAATCGAAGACATAGCAGATCT-G-ACCTTCAGGTGTTTAC-
* * * * * * * * *
135028168 ACGGAGAACAGATCGAAGGCATAGCAAATCT-G-ACCTTTGGTTGTTTTCACAACGAAGCAGACT
478 ACTGA-AGCAGATCCAA-G-AT-G---ATTTGGCATCTCT-G-TATTGTCA-GA-GAA-CA-A-T
* ** * ** * * *
135028231 C-AAG--A-TGATTTGGCAT-TCTTGTGTTTATAAGG-G-GCAAATTGAAGACATAGCAGATCTG
529 CGAAGAAACAGATTTGGCATCTC-CAT-ATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTG
* * * *
135028289 AGCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTCTT-TATTGT-C-AG
592 ACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT-TCTTGTGTT-TACAAG
*
135028348 AGAACAA
654 -GAGCAA
* * * * *
135028355 ATCG-A-ACA-AACAGATTTGACACTTCCA--T-ATT-CGACAGAGAGCAGATCGAAGGCATAGC
1 ATCGAAGACATAGCAGATCTGAC-CTT-CAGGTGTTTAC-ACTGA-AGCAGATCCAA-G-AT-G-
* * * * * * * * * * *
135028413 AGGTCT-G-ACCTTTGGATGTTTTCACATCGAAGTAGATCCAAG--A-TGATTTGGCAT-T-CTT
58 A--TTTGGCATCTCT-G-TATTGTCAGA--GAA-CAAATCGAAGAAACAGATTTGGCATCTCCAT
* ** * * * * * * *
135028471 GTGTTTAC-AAGGAGCAAATCAAAGACATAGTAGATTTGACCTTCAGG-TGTTTGCAC-T-GAAG
116 AT-TCGACGGA-GAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAG
* * * *
135028532 CGGATCTAAGATGATTTGGCA-TCTTCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCA
178 CAGATCCAAGATGATTTGGCATTCTT-GTGTT-T-ACA-A---G---G-AG---CA-A------A
* * * * * * *
135028596 TCTCCGTATTCGACGGAGAGCAAATCTGACCTT-TGGATGTTTTCACATCAAAGCAGATCAAAGA
222 --T-CG-A--AGAC--ATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGA
* * * ** * * * * *
135028660 TGATTTAGAAT-TCTTGTGTT-TACA-AGGAGTAAATTGAAGACATAGCCGATCT-G-ACCTTCA
276 TGATTTGGCATCTC-TGTATTGT-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA
* * * * * * * * *
135028720 GGTGTTTAC-ACTGA-AGCAGATCCAAG--AT----GATTTGGTATCTCT--ATATTGTCA-A-A
335 --T-ATT-CGACGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATC
* * * * * ** *
135028773 GAA-CAAATCGAAGAAACAGATTTGGCATCTCCATAT-TCGACGAA-GAGCAGATCGAAGACATA
394 GAAGCAGATCCAAG--A-TGATTTGGCAT-T-CTTGTGTTTAC-AAGGAGCAAATCGAAGACATA
* * *
135028835 GCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATACT-TGTG
453 GCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCAT-CTCTGTA
* * * * * * * *
135028898 TT-TACA-AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTTCAGGTGTTTAC-ACTGA-AGC
514 TTGT-CAGA-GAAC-AATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGC
* * * * ** ***** * *
135028957 ATATCCAAGATGATTTGGCATCTCTG---TATTGTGA-GAAAAAAAATCGAAG-A-A-AC-AG--
569 AGATCGAAGA-CA--TAGCAGATCTGACCT-TTG-GATGTTTTCACATCGAAGCAGATCCAAGAT
* * *** * *
135029012 G-TTTGGCCTCTCTATAT-TCGGC-GGAGAGCAG
629 GATTTGGCAT-TCT-TGTGTTTACAAG-GAGCAA
* * * * *
135029043 ATCGAAGACATAGCAGATCTGACCTT-TGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTT
1 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTAC-ACT-GAAGCAGATCCAAGATGATTTG
* * * * *
135029107 GCAT-TCTTGTGTT-TACA-AGGAGCAAATCGAAGACATAACAGATTT-G-ACCTTCAGGTGTTT
63 GCATCTC-TGTATTGT-CAGA-GAACAAATCGAAG--A-AACAGATTTGGCATCTCCA--T-ATT
* * * * * * * *
135029167 AC-ACTGA-AGCAGATCCAAG--AT-G-A-A-CTGGCATCTCT-G-TATTGTCAGA--GAA-CAA
119 -CGACGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATCGAAGCAG
* * * * * * * *
135029219 ATCGAAGAAACAGATTTGGCATCTCCATAT-TTGAC-GGAGAGCAGATCGAGGACATAGCAGATC
181 ATCCAAG--A-TGATTTGGCAT-T-CTTGTGTTTACAAG-GAGCAAATCGAAGACATAGCAGATC
* * * *
135029282 TGCCCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT-TCTTGTGTT-TACA
240 TGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC-TGTATTGT-CA
* * * * * * * * * *
135029344 -AGGAGCAAATCAAAGACATAGTAGATCT-G-ACCTTCAGGTCTTTAC-ACTGA-AGCATATCCA
300 GA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGCAGATCGA
* * ** ** * *
135029404 AGATGATTTGGCATCTCTGTA--TTGTGAGA-G--AACAAATCG-A--AGA---AACA-GATTTG
357 AGA-CA--TAGCAGATCTG-ACCTT-TG-GATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* ** * * * * *
135029457 GCATTTCTATAT-TCGAC-GGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATATTTT
416 GCA-TTCT-TGTGTTTACAAG-GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTA
* * * * * *
135029519 CACATCGAAGTAGATCCAAGATGATTTAGAAT-TCTTGTGTT-TACGAGGAGTA-AATTGAAGAC
477 CAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC-TGTATTGT-C-A-GAGAACAATCGAAGA-
* * * * * * *
135029581 ATAGCAGATCT--AACCTTCAGGTGATTAC-ACTGA-A-CAGATCCAAG--AT----GATTTGGC
535 A-A-CAGATTTGGCATCTCCA--T-ATT-CGACGGAGAGCAGATCGAAGACATAGCAGATCT-G-
* * * * * * * * **
135029635 ATCTCTGTAT-TGTT-AGA--GAA-CAAATCGAAGAAACAGATTTGGCA-TCTCCAT-TTT-CGA
592 ACCTTTGGATGTTTTCACATCGAAGCAGATCCAAG--A-TGATTTGGCATTCT-TGTGTTTAC-A
*
135029692 TGGAG-AGTA
652 AGGAGCA--A
* * * * *
135029701 GATCGAAGACATAGTAGATCTGACCTT-TGGATGTTTTCACATCAAAGCAGATCCAAGATGATTG
1 -ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTT
* * * * *
135029765 GGCAT-TCT-T-TTGTTTACA-AGGAGCAAATCGAAGACATAGCAGATCT-G-ACCTTCAGGTGT
62 GGCATCTCTGTATTG--T-CAGA-GAACAAATCGAAGA-A-A-CAGATTTGGCATCTCCA--T-A
** * * * * * * * * *
135029824 TTAC-ATTGA-AGCATATCCAAG--AT----GATTTGGCATCTCTGTAT-TGTT-AGA--GAA-A
117 TT-CGACGGAGAGCAGATCGAAGACATAGCAGATCT-G-ACCTTTGGATGTTTTCACATCGAAGC
* * * ** * * * *
135029876 AAATCGAAGAAACAGATTTGGCA-TCTCCAT-ATT-CGATGGAG-AGTAGATCGAAAACATCGCA
179 AGATCCAAG--A-TGATTTGGCATTCT-TGTGTTTAC-AAGGAGCA--A-ATCGAAGACATAGCA
* * * *
135029937 GATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATCTCTGTAGTGT
236 GATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGT
* * * * * * *
135030001 TAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTAGATTGAAGACAA
298 CAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
*
135030065 AGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAATTCTTGTGT
363 AGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
135030130 TTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCA
428 TTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCA
* * * * * * *
135030195 ACATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCATTTCCATAT
493 AGATGATTTGGCATCTCTGTATTGTCAGAGAA-CAATCGAAGAAACAGATTTGGCATCTCCATAT
* *
135030260 TCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAAT
557 TCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGAT
* *
135030325 CCAAGATGATTTGGCATTCTTATGTTTACGAA-GACCAA
622 CCAAGATGATTTGGCATTCTTGTGTTTAC-AAGGAGCAA
*
135030363 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135030428 TCTCTGTATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135030493 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
** * *
135030558 GCATT-TTGTGTTTACAAGGAGCAAATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* * *
135030622 GAAGCAGATCCAAGATGATTTGGCATCTCCGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * *
135030687 GCATCTCCATATTCGACGGAGAACAGATCGAAGGCATAGCAAATCTGACCTTTGGTTGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * * *
135030752 AACGAAGCAGA-CTCAAGATGATTTGGCATTCTTGTGTTTATAAGGGGCAAATTGAAGACATAGC
391 ATCGAAGCAGATC-CAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* *
135030816 AGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTTTATTGTCA
455 AGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
135030881 GAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGCAGATCGAAGGCATA
520 GAGAAC-AATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGCAGATCGAAGACATA
*
135030945 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTT
583 GCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTT
135031010 TACAAGGAGCAA
648 TACAAGGAGCAA
* * * * * *
135031022 ATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* **** * *
135031087 TCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCGTATTCGAC-----G-
66 TCTCT-GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGC
* *
135031145 -GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
* * * * *
135031200 AGAATTCTTGTGTTTACAAGGAGTAAATTGAAGACATAGCCGATCTGACCTTCAGGTGTTTACAC
195 GGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACAC
* * *
135031265 TGAAGCAGATCCAAGATGATTTGGTATCTCTATATTGTCAAAGAACAAATCGAAGAAACAGATTT
260 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTT
*
135031330 GGCATCTCCATATTCGACGAAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
325 GGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA
* * *
135031395 CATCGAAGCAGATCCAAGATGATTTGGCATACTTGTGTTTACAAGGAGCAAATCAAAGACATAGT
390 CATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGC
* *
135031460 AGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGA
455 AGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCA
* * * * * *
135031525 GAAAAAAAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCAGATCGAAGACATAG
520 G-AGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
* * * *
135031590 CAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTTGCATTCTTGTGTTT
584 CAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTT
135031655 ACAAGGAGCAA
649 ACAAGGAGCAA
* * **
135031666 ATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
135031731 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135031796 GATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135031861 GCATTCTTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTCTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* *
135031926 GAAGCATATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAACAAATCGAAGAAACAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* *
135031991 GCATTTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * * * * *
135032056 ATCGAAGTAGATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAGACATAGCA
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * *
135032121 GATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCATCTCTGTATTGTTAG
456 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
135032185 AGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTAGATCGAAGACATAGT
521 AGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGC
* * *
135032250 AGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGGCATTCTTTTGTTTA
585 AGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTA
135032315 CAAGGAGCAA
650 CAAGGAGCAA
* *
135032325 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135032390 TCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135032455 GATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135032520 GCATTCTTGTGTTTACCAGGAGCAAATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* * * *
135032585 GAAGTAGATCCAAGATGATCTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGAAATAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * * * *
135032650 GTATCTCCATATTCGACGGATAGCAGATCGAAGACATAGCAGATTTAAGCTTTGGATGTTTTCAA
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
* * *
135032715 ATCGAAGCAGATTCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAAACATAGCA
391 ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
* * *
135032780 GATCTGACCTTAAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGACATCTCTGTATTGTCAG
456 GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
135032845 AGAACAAATCGAAGAAATAGATCTGACATCTCCATATT-TATGGGAGAGCAGATCGAAGACATAG
521 AGAAC-AATCGAAGAAACAGATTTGGCATCTCCATATTCGA-CGGAGAGCAGATCGAAGACATAG
* *
135032909 TAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTT
584 CAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTT
*
135032974 ACAAGAAGCAA
649 ACAAGGAGCAA
* * * *
135032985 ATTGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135033050 TCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCTATATTTGACGAAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135033115 GATTGAAGACATAGAAGATATGACCTTTGGATGTTTTCGCATCGAAGCAGATCCAAGATGATTT-
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135033179 GCATTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCGGATCTGACCTTTAGGTGTTTACACT
196 GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
* * * * * * * *
135033244 GAAGCAGATCTAAGATGATTT----T-AC---A-TATCTGAGAATAAATTGAATAAATAGATTTG
261 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
* * * * *
135033300 GCATCTCCATATTCGACGGAGAGAAGAACGAAGACATAGTAGATCTGACCTTCAGG-TGTTTACA
326 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCA
* * *
135033364 C-T-GAAGTAAATTCAAGATGATTTGGCAT
390 CATCGAAGCAGATCCAAGATGATTTGGCAT
135033392 CACTTTATTG
Statistics
Matches: 8095, Mismatches: 1111, Indels: 871
0.80 0.11 0.09
Matches are distributed among these distances:
643 100 0.01
644 1026 0.13
645 9 0.00
646 2 0.00
648 26 0.00
649 7 0.00
650 86 0.01
651 12 0.00
652 21 0.00
653 15 0.00
654 41 0.01
655 45 0.01
656 91 0.01
657 49 0.01
658 348 0.04
659 3439 0.42
660 2012 0.25
661 147 0.02
662 99 0.01
663 22 0.00
664 26 0.00
665 35 0.00
666 3 0.00
667 5 0.00
668 7 0.00
669 4 0.00
670 1 0.00
672 2 0.00
673 1 0.00
675 2 0.00
678 2 0.00
679 2 0.00
681 2 0.00
682 2 0.00
683 8 0.00
684 29 0.00
685 33 0.00
686 21 0.00
687 57 0.01
688 46 0.01
689 30 0.00
690 44 0.01
691 58 0.01
692 34 0.00
693 28 0.00
694 16 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (659 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
GCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACT
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAC
ATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCA
GATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCA
GATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
AAGGAGCAA
Found at i:135024067 original size:87 final size:89
Alignment explanation
Indices: 135023855--135024070 Score: 251
Period size: 89 Copynumber: 2.4 Consensus size: 89
135023845 TGAAGAAACA
* *** * * *
135023855 GATTTGGCATCTCCATATTCGAGGGAGACCAGATCGAAGACATAGCAGATCTGACCTTTAGATGT
1 GATTTGGCATCTCTATATT-GTCAGAGACCAAATCGAAGACATAACAGATCTGACCTTCAGATGT
*
135023920 TTTCACATCGAAGCAGATCCAAGAT
65 TTACACATCGAAGCAGATCCAAGAT
* * * * *
135023945 GATTTAGCAT-TCT-TATGTTTACAAAGACCAAATCGAAGACATAACAGATGTGACCTTCAGGTG
1 GATTTGGCATCTCTATAT-TGT-CAGAGACCAAATCGAAGACATAACAGATCTGACCTTCAGATG
135024008 TTTACAC-T-GAAGCAGATCCAAGAT
64 TTTACACATCGAAGCAGATCCAAGAT
*
135024032 GATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGA
1 GATTTGGCATCTCTATATTGTCAGAGACCAAATCGAAGA
135024071 AACAGATTTG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
87 41 0.39
88 9 0.09
89 46 0.44
90 9 0.09
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (89 bp):
GATTTGGCATCTCTATATTGTCAGAGACCAAATCGAAGACATAACAGATCTGACCTTCAGATGTT
TACACATCGAAGCAGATCCAAGAT
Found at i:135024288 original size:87 final size:89
Alignment explanation
Indices: 135024107--135024295 Score: 208
Period size: 87 Copynumber: 2.1 Consensus size: 89
135024097 TGGAGGGCAG
* * * *
135024107 ATCGAAGGCATAGCAGATCTGACCTTTGTATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGTATGTTTACACATCGAAACAGATCCAAGATGATTTGG
* * **
135024172 CATTCTTGTGTTTTCAAGGAGCAA
66 CATTCTTGTATTGTCAAGGAAAAA
* * *
135024196 ATCGAAGACATAGCAGATTTGACCTTCAG-GTGTTTACAC-T-GAAACAGATCTAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGTATGTTTACACATCGAAACAGATCCAAGATGATTTG
135024258 GCA-TCTCTGTATTGTC-AGAGAAAAA
65 GCATTCT-TGTATTGTCAAG-GAAAAA
*
135024283 ATCGAAGAAATAG
1 ATCGAAGACATAG
135024296 ATTCGGTATC
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
86 5 0.06
87 46 0.54
88 1 0.01
89 32 0.38
90 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGTATGTTTACACATCGAAACAGATCCAAGATGATTTGG
CATTCTTGTATTGTCAAGGAAAAA
Found at i:135024944 original size:87 final size:89
Alignment explanation
Indices: 135024762--135024950 Score: 237
Period size: 89 Copynumber: 2.1 Consensus size: 89
135024752 TTTGACGGAG
* * * *
135024762 AGCAGATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGGTCCAAGATGA
1 AGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGA
135024827 TTTGGCATTCTTGTGTTTACATGA
66 TTTGGCATTCTTGTGTTTACATGA
* *
135024851 AGCAAATCGAAGACATAGCAGATCTGGCCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATG
1 AGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATG
*
135024913 ATTTGGCA-TCTCTGTAGTGTTAGA-GA
65 ATTTGGCATTCT-TGT-GT-TTACATGA
135024939 A-CAAATCAAAGA
1 AGCAAATCAAAGA
135024951 AACAGATTTG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
86 3 0.03
87 37 0.42
88 6 0.07
89 40 0.45
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (89 bp):
AGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGA
TTTGGCATTCTTGTGTTTACATGA
Found at i:135025383 original size:87 final size:89
Alignment explanation
Indices: 135025206--135025385 Score: 235
Period size: 89 Copynumber: 2.0 Consensus size: 89
135025196 CGGAGAGCAG
* * *
135025206 ATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
* *
135025271 CATTCTTATGTTTACGAAGACCAA
66 CATTCTTATGTTCACGAAGAACAA
* *
135025295 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
135025358 CATCTCTATAT-TATCA-G-AGAACAA
66 CAT-TCT-TATGT-TCACGAAGAACAA
135025382 ATCG
1 ATCG
135025386 GAGAAACAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
87 35 0.43
88 6 0.07
89 40 0.49
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
CATTCTTATGTTCACGAAGAACAA
Found at i:135025548 original size:88 final size:86
Alignment explanation
Indices: 135025420--135025579 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 86
135025410 ATTCAATGGA
* ** *
135025420 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135025485 ATTTGGCATTTTGTGTTTACAAG
64 ATTTGGCATTTTGTGTTTACAAG
** *
135025508 GAGCAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTACACTGAAGCAGATCCAAGATGA
135025572 TTTGGCAT
65 TTTGGCAT
135025580 CTCCGTATTG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
86 26 0.41
87 1 0.02
88 34 0.53
89 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (86 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTTTGTGTTTACAAG
Found at i:135026412 original size:89 final size:87
Alignment explanation
Indices: 135026283--135026443 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135026273 ATTCGACGAA
* * * *
135026283 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135026348 ATTTGGCATACTTGTGTTTACAAG
64 ATTTGGCATACTTGTGTTTACAAG
* *
135026372 GAGCAAATCAAAGACATAGTAGATCTGACCTTCAGG-TGTTTACACTGAAGCATATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135026436 TTTGGCAT
65 TTTGGCAT
135026444 CTCTGTATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATACTTGTGTTTACAAG
Found at i:135026467 original size:87 final size:88
Alignment explanation
Indices: 135026293--135026452 Score: 202
Period size: 87 Copynumber: 1.8 Consensus size: 88
135026283 GAGCAGATCG
* *
135026293 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATA
1 AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
* **
135026358 CTTGTGTTTACAAGGAGCAAATCA
66 CTTGTATTTACAA-GAAAAAATCA
* *
135026382 AAGACATAGTAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCAT
1 AAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCAT
135026444 -CTCTGTATT
65 ACT-TGTATT
135026453 GTGAGAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
86 2 0.03
87 30 0.47
88 1 0.02
89 29 0.45
90 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (88 bp):
AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
CTTGTATTTACAAGAAAAAATCA
Found at i:135027348 original size:87 final size:89
Alignment explanation
Indices: 135027168--135027351 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 89
135027158 TGGAGAGTAG
* *
135027168 ATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
**
135027233 CATTCTTTTGTTTACAAGGAGCAA
66 CATTCTTTTGTTTACAAGGAAAAA
** * *
135027257 ATCGAAGACATAGCAGATCTGACCTTCAGG-TG-TTT-ACATTGAAGCATATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
*
135027319 GCATCTCTGTATTG-TTA-GA-GAAAAA
65 GCAT-TCT-T-TTGTTTACAAGGAAAAA
135027344 ATCGAAGA
1 ATCGAAGA
135027352 AACAGATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
87 39 0.48
88 7 0.09
89 31 0.38
90 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
CATTCTTTTGTTTACAAGGAAAAA
Found at i:135027563 original size:132 final size:132
Alignment explanation
Indices: 135027257--135027584 Score: 482
Period size: 132 Copynumber: 2.5 Consensus size: 132
135027247 CAAGGAGCAA
* * *
135027257 ATCGAAGACATAGCAGATCTGACCTTCAGGTG-TTT-ACATTGAAGCATATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTT-TGGTGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* * * * *
135027320 CATCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAG
65 CATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAG
135027385 TAG
130 TAG
* * *
135027388 ATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
*
135027453 CATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAG
65 CATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAG
135027517 TAG
130 TAG
* *
135027520 ATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
135027585 AATTCTTGTG
Statistics
Matches: 176, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
130 2 0.01
131 26 0.15
132 85 0.48
133 63 0.36
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (132 bp):
ATCGAAGACATAGCAGATCTGACCTTTGGTGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAGT
AG
Found at i:135027819 original size:220 final size:220
Alignment explanation
Indices: 135027388--135029989 Score: 3758
Period size: 220 Copynumber: 11.9 Consensus size: 220
135027378 TGGAGAGTAG
* * * * *
135027388 ATCGAAAACATCGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
* * * * *
135027452 GCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGA
63 GCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGA
* * *
135027516 GTAGATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
128 GCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
*
135027581 TTGGAATTCTTGTGTTTACAAGGAGCAA
193 TTGGCATTCTTGTGTTTACAAGGAGCAA
* * *
135027609 ATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135027674 TCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135027739 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135027804 GCATTCTTATGTTTACGAA-GACCAA
196 GCATTCTTGTGTTTAC-AAGGAGCAA
* *
135027829 ATTGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135027894 TCTCTGTATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135027959 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135028024 GCATT-TTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
** * *
135028048 ATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135028113 TCTCCGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135028178 GATCGAAGGCATAGCAAATCTGACCTTTGGTTGTTTTCACAACGAAGCAGA-CTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTT
* *
135028242 GGCATTCTTGTGTTTATAAGGGGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* *
135028268 ATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135028333 TCTCTTTATTGTCAGAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGC
* * *
135028397 AGATCGAAGGCATAGCAGGTCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
135028462 GGCATTCTTGTGTTTACAAGGAGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * * * * *
135028488 ATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* **** * *
135028553 TCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCGTATTCGAC-----G-
66 TCTCT-GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGC
* *
135028611 -GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
* * *
135028666 AGAATTCTTGTGTTTACAAGGAGTAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * *
135028692 ATTGAAGACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135028757 TCTCTATATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135028822 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135028887 GCATACTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135028912 ATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * * *
135028977 TCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135029042 GATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135029107 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * **
135029132 ATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
135029197 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135029262 GATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135029327 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * *
135029352 ATCAAAGACATAGTAGATCTGACCTTCAGGTCTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135029417 TCTCTGTATTGTGAGAGAACAAATCGAAGAAACAGATTTGGCATTTCTATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135029482 GATCGAAGACATAGCAGATCTGACCTTTGGATATTTTCACATCGAAGTAGATCCAAGATGATTTA
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135029547 GAATTCTTGTGTTTACGAGGAGTAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135029572 ATTGAAGACATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135029636 TCTCTGTATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135029701 GATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135029766 GCATTCTTTTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* *
135029791 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135029856 TCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135029921 GATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135029986 GCAT
196 GCAT
135029990 CTCTGTAGTG
Statistics
Matches: 2121, Mismatches: 232, Indels: 57
0.88 0.10 0.02
Matches are distributed among these distances:
204 168 0.08
205 2 0.00
207 1 0.00
209 2 0.00
210 2 0.00
211 3 0.00
213 3 0.00
214 2 0.00
215 2 0.00
217 1 0.00
218 3 0.00
219 450 0.21
220 1445 0.68
221 35 0.02
222 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
GCATTCTTGTGTTTACAAGGAGCAA
Found at i:135028021 original size:440 final size:440
Alignment explanation
Indices: 135027395--135029989 Score: 3784
Period size: 439 Copynumber: 5.9 Consensus size: 440
135027385 TAGATCGAAA
* * * *
135027395 ACATCGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATCTC
1 ACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTGGCATCTC
* * * * * * *
135027459 TGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAGTAGATT
63 TGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATC
* *
135027523 GAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGAAT
128 GAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCAT
* * *
135027588 TCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAG
193 TCTTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAG
* * * * * *
135027653 CAGATCCAACATGATTTGACATCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCAT
258 CAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCAT
* *
135027718 TTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCG
323 CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCG
* *
135027783 AAGCAAATCCAAGATGATTTGGCATTCTTATGTTTACGAA-GACCAAATTGAAG
388 AAGCAAATCCAAGATGATTTGGCATTCTTGTGTTTAC-AAGGAGCAAATTGAAG
*
135027836 ACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
1 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
* * * *
135027901 ATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCAGATCGAA
66 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
135027966 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATT-T
131 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
* * * *
135028030 TGTGTTTACAAGGAGCAAATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACTGAAGCAG
196 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
* *
135028095 ATCCAAGATGATTTGGCATCTCCGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGCATCTC
261 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
* * * * *
135028160 CATATTCGACGGAGAACAGATCGAAGGCATAGCAAATCTGACCTTTGGTTGTTTTCACAACGAAG
326 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
* * *
135028225 CAGA-CTCAAGATGATTTGGCATTCTTGTGTTTATAAGGGGCAAATTGAAG
391 CAAATC-CAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
* *
135028275 ACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTTT
1 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
* * *
135028340 ATTGTCAGAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGCAGATCGA
66 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGCAGATCGA
* * *
135028404 AGGCATAGCAGGTCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATTC
130 AGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTC
* * *
135028469 TTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCG
195 TTGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCA
* * **** *
135028534 GATCTAAGATGATTTGGCATCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATC
260 GATCCAAGATGATTTGGCATCTCT-GTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATC
* *
135028598 TCCGTATTCGAC-----G--GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTCACATCAA
324 TCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGA
* * * * *
135028647 AGCAGATCAAAGATGATTTAGAATTCTTGTGTTTACAAGGAGTAAATTGAAG
389 AGCAAATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
* * *
135028699 ACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTATCTCTAT
1 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
* *
135028764 ATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCAGATCGAA
66 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
*
135028829 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATACT
131 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
*
135028894 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAT
196 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
* * * *
135028959 ATCCAAGATGATTTGGCATCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCCTCTC
261 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
* * * *
135029024 TATATTCGGCGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAG
326 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
* *
135029089 -AAGATCCAAGATGATTTTGCATTCTTGTGTTTACAAGGAGCAAATCGAAG
391 CAA-ATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
* * **
135029139 ACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCATCTCTGT
1 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
* *
135029204 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAG
66 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
*
135029269 GACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
131 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
* *
135029334 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTCTTTACACTGAAGCAT
196 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
* * *
135029399 ATCCAAGATGATTTGGCATCTCTGTATTGTGAGAGAACAAATCGAAGAAACAGATTTGGCATTTC
261 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
* *
135029464 TATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATATTTTCACATCGAAG
326 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
* * * * * *
135029529 TAGATCCAAGATGATTTAGAATTCTTGTGTTTACGAGGAGTAAATTGAAG
391 CAAATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
* *
135029579 ACATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCATCTCTGT
1 ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
* * * *
135029643 ATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTAGATCGAA
66 ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
* * *
135029708 GACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGGCATTCT
131 GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
* * * * *
135029773 TTTGTTTACAAGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCAT
196 TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
*
135029838 ATCCAAGATGATTTGGCATCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
261 ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
* * * * *
135029903 CATATTCGATGGAGAGTAGATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAG
326 CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
135029968 -AAGATCCAAGATGATTTGGCAT
391 CAA-ATCCAAGATGATTTGGCAT
135029990 CTCTGTAGTG
Statistics
Matches: 1945, Mismatches: 180, Indels: 60
0.89 0.08 0.03
Matches are distributed among these distances:
424 369 0.19
425 4 0.00
427 1 0.00
429 2 0.00
430 2 0.00
431 3 0.00
433 3 0.00
434 2 0.00
435 1 0.00
437 1 0.00
438 5 0.00
439 799 0.41
440 725 0.37
441 26 0.01
442 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (440 bp):
ACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
ATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
GACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATTCT
TGTGTTTACAAGGAGCAAATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCAG
ATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGAAACAGATTTGGCATCTC
CATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAG
CAAATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATTGAAG
Found at i:135028082 original size:88 final size:86
Alignment explanation
Indices: 135027954--135028113 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 86
135027944 ATTCAATGGA
* ** *
135027954 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135028019 ATTTGGCATTTTGTGTTTACAAG
64 ATTTGGCATTTTGTGTTTACAAG
** *
135028042 GAGCAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTACACTGAAGCAGATCCAAGATGA
135028106 TTTGGCAT
65 TTTGGCAT
135028114 CTCCGTATTG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
86 26 0.41
87 1 0.02
88 34 0.53
89 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (86 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTTTGTGTTTACAAG
Found at i:135028946 original size:89 final size:87
Alignment explanation
Indices: 135028817--135028977 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135028807 ATTCGACGAA
* * * *
135028817 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135028882 ATTTGGCATACTTGTGTTTACAAG
64 ATTTGGCATACTTGTGTTTACAAG
* *
135028906 GAGCAAATCAAAGACATAGTAGATCTGACCTTCAGG-TGTTTACACTGAAGCATATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135028970 TTTGGCAT
65 TTTGGCAT
135028978 CTCTGTATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATACTTGTGTTTACAAG
Found at i:135029001 original size:87 final size:88
Alignment explanation
Indices: 135028827--135028986 Score: 202
Period size: 87 Copynumber: 1.8 Consensus size: 88
135028817 GAGCAGATCG
* *
135028827 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATA
1 AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
* **
135028892 CTTGTGTTTACAAGGAGCAAATCA
66 CTTGTATTTACAA-GAAAAAATCA
* *
135028916 AAGACATAGTAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCAT
1 AAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCAT
135028978 -CTCTGTATT
65 ACT-TGTATT
135028987 GTGAGAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
86 2 0.03
87 30 0.47
88 1 0.02
89 29 0.45
90 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (88 bp):
AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
CTTGTATTTACAAGAAAAAATCA
Found at i:135029882 original size:87 final size:89
Alignment explanation
Indices: 135029702--135029885 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 89
135029692 TGGAGAGTAG
* *
135029702 ATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
**
135029767 CATTCTTTTGTTTACAAGGAGCAA
66 CATTCTTTTGTTTACAAGGAAAAA
** * *
135029791 ATCGAAGACATAGCAGATCTGACCTTCAGG-TG-TTT-ACATTGAAGCATATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
*
135029853 GCATCTCTGTATTG-TTA-GA-GAAAAA
65 GCAT-TCT-T-TTGTTTACAAGGAAAAA
135029878 ATCGAAGA
1 ATCGAAGA
135029886 AACAGATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
87 39 0.48
88 7 0.09
89 31 0.38
90 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
CATTCTTTTGTTTACAAGGAAAAA
Found at i:135030097 original size:132 final size:132
Alignment explanation
Indices: 135029791--135030118 Score: 482
Period size: 132 Copynumber: 2.5 Consensus size: 132
135029781 CAAGGAGCAA
* * *
135029791 ATCGAAGACATAGCAGATCTGACCTTCAGGTG-TTT-ACATTGAAGCATATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTT-TGGTGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
* * * * *
135029854 CATCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAG
65 CATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAG
135029919 TAG
130 TAG
* * *
135029922 ATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
*
135029987 CATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGAG
65 CATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAG
135030051 TAG
130 TAG
* *
135030054 ATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGG-TGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
135030119 AATTCTTGTG
Statistics
Matches: 176, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
130 2 0.01
131 26 0.15
132 85 0.48
133 63 0.36
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (132 bp):
ATCGAAGACATAGCAGATCTGACCTTTGGTGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATCTCTGTAGTGTTAGAGAAAAAATCAAAGAAACAGATTTGGCATCTCAATATTCGACGAAGAGT
AG
Found at i:135030353 original size:220 final size:220
Alignment explanation
Indices: 135029922--135033391 Score: 4874
Period size: 220 Copynumber: 15.9 Consensus size: 220
135029912 TGGAGAGTAG
* * * * *
135029922 ATCGAAAACATCGCAGATCTGACCTT-TGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCAGATCCAAGATGATTTG
* * * * *
135029986 GCATCTCTGTAGTGTTAGAGAACAAATCAAAGAAACAGATTT-GCATCTCAATATTCGACGAAGA
63 GCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGA
* * *
135030050 GTAGATTGAAGACAAAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
128 GCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGAT
*
135030115 TTGGAATTCTTGTGTTTACAAGGAGCAA
193 TTGGCATTCTTGTGTTTACAAGGAGCAA
* * *
135030143 ATCGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAACATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135030208 TCTCTTTATTGTCAGAGAATAAATTGAAGAAATAGATTTGGCATTTCCATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135030273 GATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* *
135030338 GCATTCTTATGTTTACGAA-GACCAA
196 GCATTCTTGTGTTTAC-AAGGAGCAA
*
135030363 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135030428 TCTCTGTATTATCAGAGAACAAATCGGAGAAACAGATTTGGCATCTCCATATTCAATGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135030493 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135030558 GCATT-TTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
** * *
135030582 ATCGAAGACATATTAGATTTGACCATCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135030647 TCTCCGTATTGTCAGAGAAAAAATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135030712 GATCGAAGGCATAGCAAATCTGACCTTTGGTTGTTTTCACAACGAAGCAGA-CTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATC-CAAGATGATTT
* *
135030776 GGCATTCTTGTGTTTATAAGGGGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* *
135030802 ATTGAAGACATAGCAGATCTGAGCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135030867 TCTCTTTATTGTCAGAGAACAAATCGAACAAACAGATTTGACA-CTTCCATATTCGACAGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATC-TCCATATTCGACGGAGAGC
* *
135030931 AGATCGAAGGCATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
135030996 GGCATTCTTGTGTTTACAAGGAGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * * * * *
135031022 ATCAAAGACATAGTAGATTTGACCTTCAGGTGTTTGCACTGAAGCGGATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* **** * *
135031087 TCT-TCGTATTCTCAGAGAGTGGATTGAAGAAACAGATTTGGCATCTCCGTATTCGAC-----G-
66 TCTCT-GTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGC
* *
135031145 -GA--G-AG-C--A--A-ATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCAAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
* * *
135031200 AGAATTCTTGTGTTTACAAGGAGTAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * *
135031226 ATTGAAGACATAGCCGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGTA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135031291 TCTCTATATTGTCAAAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
135031356 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135031421 GCATACTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135031446 ATCAAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * * *
135031511 TCTCTGTATTGTGAGAAAAAAAATCGAAGAAACAGGTTTGGCCTCTCTATATTCGGCGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135031576 GATCGAAGACATAGCAGATCTGACCTTTGGTTGTTTTCAAATCGAAGAAGATCCAAGATGATTTT
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135031641 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * **
135031666 ATCGAAGACATAACAGATTTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGAACTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
*
135031731 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135031796 GATCGAGGACATAGCAGATCTGCCCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135031861 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * *
135031886 ATCAAAGACATAGTAGATCTGACCTTCAGGTCTTTACACTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * *
135031951 TCTCTGTATTGTGAGAGAACAAATCGAAGAAACAGATTTGGCATTTCTATATTCGACGGAGAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* *
135032016 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTA
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
* * *
135032081 GAATTCTTGTGTTTACGAGGAGTAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * *
135032106 ATTGAAGACATAGCAGATCTAACCTTCAGGTGATTACACTGAA-CAGATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135032170 TCTCTGTATTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATTTTCGATGGAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * *
135032235 GATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135032300 GCATTCTTTTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* *
135032325 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCATATCCAAGATGATTTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135032390 TCTCTGTATTGTTAGAGAAAAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGAAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135032455 GATCGAAAACATCGCAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
*
135032520 GCATTCTTGTGTTTACCAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * *
135032545 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACTGAAGTAGATCCAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * *
135032610 TCTCTGTATTGTCAGAGAACAAATTGAAGAAATAGATTTGGTATCTCCATATTCGACGGATAGCA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * * *
135032675 GATCGAAGACATAGCAGATTTAAGCTTTGGATGTTTTCAAATCGAAGCAGATTCAAGATGATTTG
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135032740 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * * *
135032765 ATTGAAAACATAGCAGATCTGACCTTAAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGACA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135032830 TCTCTGTATTGTCAGAGAACAAATCGAAGAAATAGATCTGACATCTCCATATT-TATGGGAGAGC
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGA-CGGAGAGC
* *
135032894 AGATCGAAGACATAGTAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
130 AGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
*
135032959 GGCATTCTTGTGTTTACAAGAAGCAA
195 GGCATTCTTGTGTTTACAAGGAGCAA
* * * *
135032985 ATTGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATCTGGCA
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * *
135033050 TCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCTATATTTGACGAAGAGTA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * *
135033115 GATTGAAGACATAGAAGATATGACCTTTGGATGTTTTCGCATCGAAGCAGATCCAAGATGATTT-
131 GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
135033179 GCATTCTTGTGTTTACAAGGAGCAA
196 GCATTCTTGTGTTTACAAGGAGCAA
* * * *
135033204 ATCGAATACATAGCGGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCTAAGATGATTT----
1 ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
* * * * * * * *
135033265 T-AC---A-TATCTGAGAATAAATTGAATAAATAGATTTGGCATCTCCATATTCGACGGAGAGAA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
* * * * * * *
135033325 GAACGAAGACATAGTAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGTAAATTCAAGATGATTT
131 GATCGAAGACATAGCAGATCTGACCTT-TGGATGTTTTCACATCGAAGCAGATCCAAGATGATTT
135033387 GGCAT
195 GGCAT
135033392 CACTTTATTG
Statistics
Matches: 2889, Mismatches: 328, Indels: 76
0.88 0.10 0.02
Matches are distributed among these distances:
204 169 0.06
205 2 0.00
207 1 0.00
208 18 0.01
209 7 0.00
210 77 0.03
211 6 0.00
213 3 0.00
214 3 0.00
215 3 0.00
217 1 0.00
218 3 0.00
219 530 0.18
220 2028 0.70
221 36 0.01
222 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (220 bp):
ATCGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
GATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTG
GCATTCTTGTGTTTACAAGGAGCAA
Found at i:135030451 original size:87 final size:89
Alignment explanation
Indices: 135030274--135030453 Score: 235
Period size: 89 Copynumber: 2.0 Consensus size: 89
135030264 CGGAGAGCAG
* * *
135030274 ATCGAAGACATAGCAGATCTGACCTTTAGATGTTTTCACATCGAAGCAAATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
* *
135030339 CATTCTTATGTTTACGAAGACCAA
66 CATTCTTATGTTCACGAAGAACAA
* *
135030363 ATCGAAGACATAACAGATCTGACCTTCAGGTGTTTACAC-T-GAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
135030426 CATCTCTGTAT-TATCA-G-AGAACAA
66 CAT-TCT-TATGT-TCACGAAGAACAA
135030450 ATCG
1 ATCG
135030454 GAGAAACAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
87 35 0.43
88 6 0.07
89 40 0.49
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAACAGATCTGACCTTCAGATGTTTACACATCGAAGCAAATCCAAGATGATTTGG
CATTCTTATGTTCACGAAGAACAA
Found at i:135030616 original size:88 final size:86
Alignment explanation
Indices: 135030488--135030647 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 86
135030478 ATTCAATGGA
* ** *
135030488 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135030553 ATTTGGCATTTTGTGTTTACAAG
64 ATTTGGCATTTTGTGTTTACAAG
** *
135030576 GAGCAAATCGAAGACATATTAGATTTGACCATCAGG-TGTTTACACTGAAGCAGATCCAAGATGA
1 GAGCAAATCGAAGACATAGCAGATCTGACC-TCAGGATGTTTACACTGAAGCAGATCCAAGATGA
135030640 TTTGGCAT
65 TTTGGCAT
135030648 CTCCGTATTG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
86 26 0.41
87 1 0.02
88 34 0.53
89 3 0.05
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (86 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTCAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATTTTGTGTTTACAAG
Found at i:135031480 original size:89 final size:87
Alignment explanation
Indices: 135031351--135031511 Score: 234
Period size: 89 Copynumber: 1.8 Consensus size: 87
135031341 ATTCGACGAA
* * * *
135031351 GAGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG
1 GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACAC-T-GAAGCAGATCCAAGATG
135031416 ATTTGGCATACTTGTGTTTACAAG
64 ATTTGGCATACTTGTGTTTACAAG
* *
135031440 GAGCAAATCAAAGACATAGTAGATCTGACCTTCAGG-TGTTTACACTGAAGCATATCCAAGATGA
1 GAGCAAATCAAAGACATAGCAGATCTGACCTT-AGGATGTTTACACTGAAGCAGATCCAAGATGA
135031504 TTTGGCAT
65 TTTGGCAT
135031512 CTCTGTATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (87 bp):
GAGCAAATCAAAGACATAGCAGATCTGACCTTAGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATACTTGTGTTTACAAG
Found at i:135031535 original size:87 final size:88
Alignment explanation
Indices: 135031361--135031520 Score: 202
Period size: 87 Copynumber: 1.8 Consensus size: 88
135031351 GAGCAGATCG
* *
135031361 AAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGCATA
1 AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
* **
135031426 CTTGTGTTTACAAGGAGCAAATCA
66 CTTGTATTTACAA-GAAAAAATCA
* *
135031450 AAGACATAGTAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGCATATCCAAGATGATTTGGCAT
1 AAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCAT
135031512 -CTCTGTATT
65 ACT-TGTATT
135031521 GTGAGAAAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
86 2 0.03
87 30 0.47
88 1 0.02
89 29 0.45
90 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (88 bp):
AAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGGCATA
CTTGTATTTACAAGAAAAAATCA
Found at i:135032416 original size:87 final size:89
Alignment explanation
Indices: 135032236--135032419 Score: 209
Period size: 87 Copynumber: 2.1 Consensus size: 89
135032226 TGGAGAGTAG
* *
135032236 ATCGAAGACATAGTAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
**
135032301 CATTCTTTTGTTTACAAGGAGCAA
66 CATTCTTTTGTTTACAAGGAAAAA
** * *
135032325 ATCGAAGACATAGCAGATCTGACCTTCAGG-TG-TTT-ACATTGAAGCATATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGG
*
135032387 GCATCTCTGTATTG-TTA-GA-GAAAAA
65 GCAT-TCT-T-TTGTTTACAAGGAAAAA
135032412 ATCGAAGA
1 ATCGAAGA
135032420 AACAGATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
87 39 0.48
88 7 0.09
89 31 0.38
90 5 0.06
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATGATTGGG
CATTCTTTTGTTTACAAGGAAAAA
Found at i:135032633 original size:87 final size:88
Alignment explanation
Indices: 135032469--135032639 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 88
135032459 GAAAACATCG
** * * * *
135032469 CAGATCTGACCTTTGGTTGTTTTCACATCGAAGAAGATCCAAGATGATTTGGCATTCTTGTGTTT
1 CAGATCTGACCTTCAGATGTTTACACATCGAAGAAGATCCAAGATGATCTGGCATTCTTGTATTT
*
135032534 ACCAGGAGCAAATCGAAGACATAA
66 A-CAGGAACAAATCGAAGACATAA
*
135032558 CAGATCTGACCTTCAGATGTTTACAC-T-GAAGTAGATCCAAGATGATCTGGCA-TCTCTGTATT
1 CAGATCTGACCTTCAGATGTTTACACATCGAAGAAGATCCAAGATGATCTGGCATTCT-TGTATT
*
135032620 GT-CAGAGAACAAATTGAAGA
65 -TACAG-GAACAAATCGAAGA
135032640 AATAGATTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
86 6 0.09
87 40 0.57
88 2 0.03
89 22 0.31
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (88 bp):
CAGATCTGACCTTCAGATGTTTACACATCGAAGAAGATCCAAGATGATCTGGCATTCTTGTATTT
ACAGGAACAAATCGAAGACATAA
Found at i:135033462 original size:561 final size:562
Alignment explanation
Indices: 135032772--135033826 Score: 1535
Period size: 561 Copynumber: 1.9 Consensus size: 562
135032762 CAAATTGAAA
* *
135032772 ACATAGCAGATCTGACCTTAAGGTGTTTACACTAAAGCAGATCCAAGATGATTTGACATCTCTGT
1 ACATAGCAGATCTGACCTTAAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGACATCACTGT
* * * *
135032837 ATTGTCAGAGAACAAATCGAAGAAATAGATCTGACATCTCCATATTTATGGGAGAGCAGATCGAA
66 ATTGTCAGAGAACAAATCGAAGAAACAGATCAGACATCTCCATATTGATCGGAGAGCAGATCGAA
* * * ** *
135032902 GACATAGTAGATCTAACCTTTGGATGTTTTCA-CATCGAAGCAGATCCAAGATGATTTGGCATTC
131 GACATAGCAGATCTAACCTTTGGATGTTTGCATAAT-GAAGCAGAAACAAGATGATTTGACATTC
* *
135032966 TTGTGTTTACAAGAAGCAAATTGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGCA
195 TTGTGTTTACAAGAAGAAAATCGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGCA
* * *
135033031 GATCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
260 AAGCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAATTTGGCATCT
* * * *
135033096 CTATATTTGAC-GAAGAGTAGATTGAAGACATAGAAGATATGACCTTTGGATGTTTTCGCATCGA
325 CCATATTTGACGGAA-AGTAGATCGAAGACATAGAAGATATGACCTTTGGATGTTTTCACATCCA
* * * *
135033160 AGCAGATCCAAGATGATTT-GCATTCTTGTGTTTACAAGGAGCAAATCGAATACATAGCGGATCT
389 ACCAGATCCAAGATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGAAGACATAGCAGATCT
* *
135033224 GACCTTTAGGTGTTTACACTGAAGCAGATCTAAGATGATTTTACATATCTGAGAATAAATTGAAT
454 GACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTTACATATCTGAGAATAAATTGAAT
135033289 AAATAGATTTGGCATCTCCATATTCGACGGAGAGAAGAACGAAG
519 AAATAGATTTGGCATCTCCATATTCGACGGAGAGAAGAACGAAG
* * * * * * *
135033333 ACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGTAAATTCAAGATGATTTGGCATCACTTT
1 ACATAGCAGATCTGACCTTAAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGACATCACTGT
*
135033398 ATTGTCAGAGAATAAATCGAAGAAACAGATTCAG-CATCTCCATATTCGA-CGGAGAGCAGATCG
66 ATTGTCAGAGAACAAATCGAAGAAACAGA-TCAGACATCTCCATATT-GATCGGAGAGCAGATCG
* * *
135033461 AAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAATGAAGCAGAAACAAGATTATTTGACATT
129 AAGACATAGCAGATCTAACCTTTGGATGTTTGCATAATGAAGCAGAAACAAGATGATTTGACATT
* * * ** * * *
135033526 GTTGTGTTTACAAGGAGAAAATCGAAGACATAGCCGATCTTACCTTTAGGTGTTTACACTGAAGT
194 CTTGTGTTTACAAGAAGAAAATCGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGC
* * * ** *
135033591 AAAGCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCGGATTGAAGAAACAAATTTGGCATC
259 AAAGCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAATTTGGCATC
* * *
135033656 TCCATATTTGACGGAAAGTAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCCT
324 TCCATATTTGACGGAAAGTAGATCGAAGACATAGAAGATATGACCTTTGGATGTTTTCACATCCA
135033721 ACCAGATCCAAGATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGAAGACATAGCAGATCT
389 ACCAGATCCAAGATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGAAGACATAGCAGATCT
*
135033786 GACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTT
454 GACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTT
135033827 GGCATCTCTG
Statistics
Matches: 433, Mismatches: 56, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
561 344 0.79
562 89 0.21
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (562 bp):
ACATAGCAGATCTGACCTTAAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGACATCACTGT
ATTGTCAGAGAACAAATCGAAGAAACAGATCAGACATCTCCATATTGATCGGAGAGCAGATCGAA
GACATAGCAGATCTAACCTTTGGATGTTTGCATAATGAAGCAGAAACAAGATGATTTGACATTCT
TGTGTTTACAAGAAGAAAATCGAAGACATAACAAATCTGACCTTCAGGTGTTTACACTGAAGCAA
AGCCAAGATGATCTGGCATCTCTGTATTGCCAGAGAACAAATCGAAGAAACAAATTTGGCATCTC
CATATTTGACGGAAAGTAGATCGAAGACATAGAAGATATGACCTTTGGATGTTTTCACATCCAAC
CAGATCCAAGATGATTTGGCATTCTTGTGTATACAAGGAGCAAATCGAAGACATAGCAGATCTGA
CCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTTACATATCTGAGAATAAATTGAATAA
ATAGATTTGGCATCTCCATATTCGACGGAGAGAAGAACGAAG
Found at i:135033710 original size:220 final size:220
Alignment explanation
Indices: 135033328--135037197 Score: 5461
Period size: 220 Copynumber: 17.6 Consensus size: 220
135033318 GAGAGAAGAA
* * * *
135033328 CGAAGACATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGTAAATTCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * **
135033393 ACTTTATTGTCAGAGAATAAATCGAAGAAACAGATTCAGCATCTCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * ** * *
135033458 TCGAAGGCATAGCAGATCTGACCTTTGGATGTTTGCATAAT-GAAGCAGAAACAAGATTATTTGA
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCA-CATCGAAGCAGATCCAAGATGATTTGG
* *
135033522 CATTGTTGTGTTTACAAGGAGAAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * * * * *
135033548 CGAAGACATAGCCGATCTTACCTTTAGGTGTTTACACTGAAGTAAAGCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* ** * * * * *
135033613 TCTGTATTGTCAGAGAGCGGATTGAAGAAACAAATTTGGCATCTCCATATTTGACGGAAAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
** *
135033678 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCCTACCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135033743 ATTCTTGTGTATACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
*
135033768 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * *
135033833 TCTGTATTGTTAGAGAACAAATCGAAGAAACATATTTGGCATCTCTATATTCGATGGGGAGAAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * ** *
135033898 TCGAAGACATAGCAGATTTGACCTTTGGACGATTTCACATCGAATTAGATCCAAAATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
* *
135033963 ATTATTGTGTTTACAAGAAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * ** * *
135033988 CGAAGACATTGCAAATCTGACCTTTAATTGTTTACTCTGAAGTAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * *
135034053 TCTGTATTGTCAGAGAACAAATTGAAGAAACAGATTTGTCATCCCCATATTCGACGGAGA-CTAG
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGC-AG
* * **
135034117 ATCGAAGACATAACAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATTAAAGATGATTTGG
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
135034182 CATTCTTGTGTTTACAAGGAGCAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * * * * *
135034208 CAAAGACATATCAAATTTGACCTTCAGGTGTTTACACTGTAGCGGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
** * * *
135034273 TCTGTATTGTCAGAGAACGGATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGGGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135034338 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCAAATCAAAGCAGGTCTAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135034403 TTTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135034428 CGAATG-CATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCAT
1 CGAA-GACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
*
135034492 CTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCACCATATTCGACGGAGAGCAG
65 CTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
* * * *
135034557 ATCGAAGAGATAGCAGATCCGACCTTTGGATGTTGTCACATAGAAGCAGATCCAAGATGATTT-G
130 ATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
*
135034621 CATTCTTGTGTTTACAAGGTGCAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * *
135034647 CGAAGAAATAGTAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * *
135034712 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGAAGAACAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * ** *
135034777 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAAAAACAAGATTATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135034842 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135034867 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCTAAAATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* ** * *
135034932 TCTGTATTGTCAGAGAGCGGATTGAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135034997 TCGAAGACCTAGTAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135035062 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135035087 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTATACTAAAGCAGATCCAAGATAATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135035152 TCTGTATTGTCAGTGAACAAATCGAAGAAACAGATCTGACATCTCCATATTCAAGGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
** * * * * *
135035217 TCGAAGACATATTATATCTAACCTTTGGATGTTTTCACATCAAAGCAGGTCCAAGATGATTTTGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135035282 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135035307 CGAAGACATAACAGATCTGACCTTAAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
*
135035372 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * ** *
135035437 TCGAAGACATAACAGATCTGATCTTTGGATGTTTTCACATCAAAGCAGAAACAAGATTG-TTTCG
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA-TGATTTGG
135035501 CATTCTTGTGTTTACAAGGAGCAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* *
135035527 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGAGCCAAAATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* ** * * * *
135035592 TCTGTATTGTCAGAGAGCGGATTGAAGAAACAGATTTGGCATCTCCATATTTGATGGAGAGCAAA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
*
135035657 TCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
**
135035722 ATTCTTGTGTTTACAAGGAGTGAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * *
135035747 CGAAGACATAGTAGATTTGACCTTCAGGTGTTTACACTGAAGCATATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* *
135035812 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGACATCTCCATATTCGACGGAGAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* ** * *
135035877 TCAAAGATGTACCAGGTCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135035942 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
*
135035967 CGAAGACATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* ** * * *
135036032 TCCGTATTGTCAGAGAACGGATTGAAGAAACAGATTTGGCATCTCCATATTCGACGGAAAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135036097 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCTAAGCAGGTCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135036162 TTTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * * *
135036187 CGAATACATAGCAGATCTGGCCTTCAAGTGTTTACACTGAAGTAGATCCAAGATTATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135036252 TCTATTTTGTCAG-GAACAAATCGAAGAAACAGATTTGGCATCACCATAGTCGACGGAGAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135036316 TCGAAGACATAGCAGATCCGACCATTGGATGTTGTCACATCGAAGCAGATCCAAGATGATTTTGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135036381 ATTCTTGTGTTTACAAGGTGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
*
135036406 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* *
135036471 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
135036536 TAGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
135036601 ATTCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * * *
135036626 TGAAGGCATAGTAGATCTGACCTTTAGGTGTTTACACTGAAGCAGATCCTAGATGATTTGGCATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135036691 TCTGTATTGTTAGAGAATAAATCGAAGAAATAGATTTGGCATCTCCATATTCGATGGAGGGCAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
*
135036756 TCGAAGACATTGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA-GTATTTGG
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATG-ATTTGG
135036820 CATTCTTGTGTTTACAAGGAGCAAAT
195 CATTCTTGTGTTTACAAGGAGCAAAT
* * * * * * * *
135036846 CGAAGACACAGTAGATCTAACCTTCAGTTTTTTACACTAAAGCAAATCCAAGATGATTTGACATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * *
135036911 TC-------T--GAGAATAAATTGAATAAACAGATTTGGCATCTCCATATTCGAGGGAGAGTAGA
66 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* * * *
135036967 TCGAAGACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCCAAGATGATTTTGC
131 TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
*
135037032 ATCCTTGTGTTTACAAGGAGCAAAT
196 ATTCTTGTGTTTACAAGGAGCAAAT
* * * *
135037057 CAAAGACATAGCAGATCTGACCTTCATGTGTTTACACTGAAGCAAATCCAAGATGATTTGACATC
1 CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
* * * * * * * ** * *
135037122 TCTATATTGTCA-AGGAACGAATCAAAGGTAGCAAATTTGACATCTCTGTATTCGACAGAGAGAA
66 TCTGTATTGTCAGA-GAACAAATCGAA-GAAACAGATTTGGCATCTCCATATTCGACGGAGAGCA
*
135037186 GATCGAAAACAT
129 GATCGAAGACAT
135037198 CAACATGACA
Statistics
Matches: 3249, Mismatches: 379, Indels: 43
0.89 0.10 0.01
Matches are distributed among these distances:
211 188 0.06
212 1 0.00
213 1 0.00
218 2 0.00
219 404 0.12
220 2612 0.80
221 41 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (220 bp):
CGAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATC
TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
TCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGGC
ATTCTTGTGTTTACAAGGAGCAAAT
Found at i:135035119 original size:89 final size:87
Alignment explanation
Indices: 135034990--135035150 Score: 218
Period size: 89 Copynumber: 1.8 Consensus size: 87
135034980 ATTTGACGGA
* * * * *
135034990 GAGCAGATCGAAGACCTAGTAGATCTGACCTTTGGATGTTT-TCACATCGAAGCAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTAT-AC-T-AAAGCAGATCCAAGAT
*
135035054 GATTTGGCATTCTTGTGTTTACAAG
63 AATTTGGCATTCTTGTGTTTACAAG
135035079 GAGCAAATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTATACTAAAGCAGATCCAAGATAA
1 GAGCAAATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTATACTAAAGCAGATCCAAGATAA
135035143 TTTGGCAT
65 TTTGGCAT
135035151 CTCTGTATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.56
90 3 0.05
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (87 bp):
GAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTATACTAAAGCAGATCCAAGATAAT
TTGGCATTCTTGTGTTTACAAG
Found at i:135035173 original size:87 final size:89
Alignment explanation
Indices: 135034996--135035191 Score: 214
Period size: 87 Copynumber: 2.3 Consensus size: 89
135034986 CGGAGAGCAG
* * * * *
135034996 ATCGAAGACCTAGTAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATAATTTGG
* *
135035061 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTGTATTTACAAGGAACAA
135035085 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTAT-AC-T-AAAGCAGATCCAAGATAATTT
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTT-TCACATCAAAGCAGATCCAAGATAATTT
135035146 GGCA-TCTCTGTATTGT-C-AGTGAACAA
64 GGCATTCT-TGTATT-TACAAG-GAACAA
135035172 ATCGAAGA-A-A-CAGATCTGAC
1 ATCGAAGACATAGCAGATCTGAC
135035192 ATCTCCATAT
Statistics
Matches: 95, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
84 10 0.11
85 1 0.01
86 6 0.06
87 42 0.44
88 2 0.02
89 31 0.33
90 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTTCACATCAAAGCAGATCCAAGATAATTTGG
CATTCTTGTATTTACAAGGAACAA
Found at i:135035835 original size:87 final size:89
Alignment explanation
Indices: 135035648--135035839 Score: 216
Period size: 87 Copynumber: 2.2 Consensus size: 89
135035638 ATATTTGATG
* * *
135035648 GAGAGCAAATCAAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGA
1 GAGAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGA
*
135035713 TGATTTGGCATTCTTGTGTTTACA
66 TGATTTGGCATTCTTGTATTTACA
** * * *
135035737 -AGGAGTGAATCGAAGACATAGTAGATTTGACCTTCAGG-TGTTTACAC-T-GAAGCATATCCAA
1 GA-GAGCAAATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAA
135035798 GATGATTTGGCA-TCTCTGTATTGT-CA
64 GATGATTTGGCATTCT-TGTATT-TACA
*
135035824 GAGAACAAATCGAAGA
1 GAGAGCAAATCGAAGA
135035840 AACAGATTTG
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
86 3 0.03
87 42 0.49
88 4 0.05
89 35 0.41
90 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (89 bp):
GAGAGCAAATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGA
TGATTTGGCATTCTTGTATTTACA
Found at i:135036492 original size:87 final size:89
Alignment explanation
Indices: 135036315--135036498 Score: 204
Period size: 87 Copynumber: 2.1 Consensus size: 89
135036305 CGGAGAGTAG
*
135036315 ATCGAAGACATAGCAGATCCGACCATTGGATGTTGTCACATCGAAGCAGATCCAAGATGATTTTG
1 ATCGAAGACATAGCAGATCCGACCATTGGATGTTGTCACATCGAAGCAGATCCAAGATGATTTGG
* **
135036380 CATTCTTGTGTTTACAAGGTGCAA
66 CATTCTTGTATTTACAAGGAACAA
* *
135036404 ATCGAAGACATAGCAGATCTGACC-TTCAGG-TGTT-T-ACA-CTGAAGTAGATCCAAGATGATT
1 ATCGAAGACATAGCAGATCCGACCATT--GGATGTTGTCACATC-GAAGCAGATCCAAGATGATT
135036464 TGGCA-TCTCTGTATTGT-C-AGAGAACAA
63 TGGCATTCT-TGTATT-TACAAG-GAACAA
135036491 ATCGAAGA
1 ATCGAAGA
135036499 AACAGATTTG
Statistics
Matches: 83, Mismatches: 6, Indels: 14
0.81 0.06 0.14
Matches are distributed among these distances:
86 6 0.07
87 44 0.53
88 4 0.05
89 27 0.33
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCCGACCATTGGATGTTGTCACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTGTATTTACAAGGAACAA
Found at i:135037136 original size:87 final size:88
Alignment explanation
Indices: 135036970--135037148 Score: 215
Period size: 87 Copynumber: 2.0 Consensus size: 88
135036960 GAGTAGATCG
* *
135036970 AAGACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCCAAGATGATTTTGCATC
1 AAGACATAGCAGATCTGACCTTC-GATATTTTCACACTGAAGCAAATCCAAGATGATTTTGCATC
* * *
135037035 CTTGTGTTTACAAGGAGCAAATCA
65 CTTATGTGTACAAGGAACAAATCA
*
135037059 AAGACATAGCAGATCTGACCTTC-ATGTGTTT-ACACTGAAGCAAATCCAAGATGA-TTTGACAT
1 AAGACATAGCAGATCTGACCTTCGATAT-TTTCACACTGAAGCAAATCCAAGATGATTTTG-CAT
*
135037121 CTCTATAT-TGT-CAAGGAACGAATCA
64 C-CT-TATGTGTACAAGGAACAAATCA
135037146 AAG
1 AAG
135037149 GTAGCAAATT
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
86 4 0.05
87 43 0.54
88 7 0.09
89 25 0.32
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (88 bp):
AAGACATAGCAGATCTGACCTTCGATATTTTCACACTGAAGCAAATCCAAGATGATTTTGCATCC
TTATGTGTACAAGGAACAAATCA
Found at i:135037550 original size:19 final size:19
Alignment explanation
Indices: 135037526--135037623 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
135037516 AATCTTTAAG
135037526 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
135037545 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
135037564 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
135037581 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
135037600 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
135037621 GAT
1 GAT
135037624 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:135037556 original size:36 final size:36
Alignment explanation
Indices: 135037516--135037623 Score: 121
Period size: 36 Copynumber: 2.9 Consensus size: 36
135037506 ATGGAAATAT
*
135037516 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAAGATATGCAATCTTAGATATGATATGC
* *
135037552 AATC-TTAAATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAAGAT-ATGCAATCTTAGATATGATATGC
135037588 AATC-TTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTTTA-A-A-GATATGCAATCTT--AGATATGAT
135037624 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
35 6 0.10
36 33 0.54
37 1 0.02
38 10 0.16
39 2 0.03
40 9 0.15
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTTAAAGATATGCAATCTTAGATATGATATGC
Found at i:135040937 original size:29 final size:29
Alignment explanation
Indices: 135040836--135040929 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
135040826 GTGACGAGAT
135040836 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
135040865 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
135040894 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
135040923 CGGCACT
1 TGGCACT
135040930 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:135040954 original size:58 final size:58
Alignment explanation
Indices: 135040832--135040966 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
135040822 TACGGTGACG
* * *
135040832 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
135040889 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
135040947 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
135040967 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:135048862 original size:29 final size:29
Alignment explanation
Indices: 135048761--135048854 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
135048751 GTGACGAGAT
135048761 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
135048790 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
135048819 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
135048848 CGGCACT
1 TGGCACT
135048855 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:135048879 original size:58 final size:58
Alignment explanation
Indices: 135048757--135048891 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
135048747 TACGGTGACG
* * *
135048757 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
135048814 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
135048872 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
135048892 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:135052826 original size:30 final size:31
Alignment explanation
Indices: 135052783--135052848 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
135052773 TGGCCATAGC
* *
135052783 CCTTCTCATATTTCATAACACTGGG-CGAAG
1 CCTTTTCAAATTTCATAACACTGGGCCGAAG
**
135052813 CCTTTTCAAATTTCATATTACTGGGCCGAAG
1 CCTTTTCAAATTTCATAACACTGGGCCGAAG
135052844 CCTTT
1 CCTTT
135052849 ACGTAAACTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 21 0.68
31 10 0.32
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (31 bp):
CCTTTTCAAATTTCATAACACTGGGCCGAAG
Found at i:135053092 original size:24 final size:24
Alignment explanation
Indices: 135053040--135053205 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
135053030 GCTTTATCAT
*
135053040 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
135053065 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
135053089 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
135053112 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
135053136 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
135053160 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
135053183 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
135053206 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:135053116 original size:47 final size:48
Alignment explanation
Indices: 135053039--135053205 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
135053029 TGCTTTATCA
* *
135053039 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
135053088 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
135053135 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
135053182 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
135053206 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:135053140 original size:71 final size:71
Alignment explanation
Indices: 135053040--135053205 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
135053030 GCTTTATCAT
* *
135053040 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
135053104 GCCCTTTA
64 GCCCTTTA
* * *
135053112 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
135053177 CCTTTA
66 CCTTTA
135053183 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
135053206 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:135053278 original size:9 final size:9
Alignment explanation
Indices: 135053264--135053320 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
135053254 ATCTCGTGTG
135053264 CATATCATA
1 CATATCATA
*
135053273 CATATCATGTG
1 CATATCA--TA
135053284 CATATCATA
1 CATATCATA
* *
135053293 CATGTCATGTG
1 CATATCA--TA
135053304 CATATCATA
1 CATATCATA
135053313 CATATCAT
1 CATATCAT
135053321 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:135053283 original size:20 final size:20
Alignment explanation
Indices: 135053260--135053322 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
135053250 GAACATCTCG
135053260 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
135053280 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
135053300 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
135053320 TGT
1 TGT
135053323 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:135053400 original size:24 final size:24
Alignment explanation
Indices: 135053359--135053405 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
135053349 ATATATAAAC
* * *
135053359 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
135053383 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
135053406 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:135054615 original size:27 final size:27
Alignment explanation
Indices: 135054553--135054630 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
135054543 GGGCATATTC
135054553 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
135054580 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
135054607 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
135054631 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:135054701 original size:27 final size:27
Alignment explanation
Indices: 135054671--135054890 Score: 165
Period size: 27 Copynumber: 8.1 Consensus size: 27
135054661 GTAAATCTAC
* *
135054671 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTAT
* * ** *
135054698 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACTAAGGGTATTTCGGTAA-TTTTAT
* * * *
135054726 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAACT-AAGGGTATTTCGGTAATTTTAT
* * *
135054754 AAA-TCAGGGGTATTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTCGGTAATTTTAT
* * * *
135054781 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCGGTAATTTTAT
* *
135054808 AAACCAAGGGTATTTTGGTAATTTTA-
1 AAACTAAGGGTATTTCGGTAATTTTAT
* * *
135054834 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCGGTAATTTTAT
** *
135054861 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTCGGTAATTTTAT
135054888 AAA
1 AAA
135054891 TCGAGGGTAA
Statistics
Matches: 155, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 24 0.15
27 103 0.66
28 14 0.09
29 14 0.09
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACTAAGGGTATTTCGGTAATTTTAT
Found at i:135054776 original size:56 final size:54
Alignment explanation
Indices: 135054648--135054926 Score: 173
Period size: 54 Copynumber: 5.1 Consensus size: 54
135054638 TTTCATCCTA
* * *
135054648 CAAGGGTGTTTTGGTAA-ATCTACAAA-CTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTTACAAATC-AAGGGTATTTCAGTAA-TTTGTAAAC
* * * * *
135054702 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTTACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAAC
* ** * **
135054758 CAGGGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTT-GTAAAC
* **
135054812 CAAGGGTATTTTGGTAA-TTTTA-AAA-CTAGGGGTATTTTGGTAATTT-TACAAAC
1 CAAGGGTATTTTGGTAATTTTTACAAATC-AAGGGTATTTCAGTAATTTGT--AAAC
* * * *** *
135054865 TAAGGGTATTTTAGTAATTTTGT--AAATCGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTT-TACAAATCAAGGGTATTTCAGTAATT-TGTAAAC
135054919 CAAGGGTA
1 CAAGGGTA
135054927 AAATAGTAAT
Statistics
Matches: 175, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
53 41 0.23
54 78 0.45
55 19 0.11
56 36 0.21
57 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTCAGTAATTTGTAAAC
Found at i:135054819 original size:54 final size:54
Alignment explanation
Indices: 135054648--135054885 Score: 219
Period size: 54 Copynumber: 4.4 Consensus size: 54
135054638 TTTCATCCTA
* * * * * **
135054648 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * * * * * ** *
135054702 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCGGTAATTTTACAAAC
* * *
135054758 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* * *
135054812 CAAGGGTATTTTGGTAATTTTA-AAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
* *
135054865 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
135054886 GTAAATCGAG
Statistics
Matches: 149, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 45 0.30
54 53 0.36
55 16 0.11
56 35 0.23
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTTACAAAC
Found at i:135054860 original size:80 final size:81
Alignment explanation
Indices: 135054731--135054884 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 81
135054721 TTTAGAAAGT
* * *
135054731 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
*
135054796 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
135054812 CAAGGGTATTT-TGGTAA-TTT-TAAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
1 CAAGGGTATTTCT-GTAACTTTGTAAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
*
135054874 TTTAGTAATTT
64 TTCAGTAATTT
135054885 TGTAAATCGA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
79 5 0.08
80 46 0.70
81 15 0.23
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
CAGTAATTTCACAAAC
Found at i:135054897 original size:27 final size:27
Alignment explanation
Indices: 135054676--135054953 Score: 145
Period size: 27 Copynumber: 10.3 Consensus size: 27
135054666 TCTACAAACT
* *
135054676 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
135054703 AATGGTATTTCTA-TAATTTT-TAGAAAGTC
1 AAGGGTATTT-TAGTAATTTTGT--AAA-TC
*
135054732 AAGGGTATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TAGTAATTTTGTAAATC
* * ** *
135054759 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTGTAAATC
* ** *** *
135054786 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* *
135054813 AAGGGTATTTTGGTAA-TTT-TAAAAC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * **
135054838 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTGTAAATC
135054865 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTGTAAATC
* **** *
135054893 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
135054920 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
135054947 GAGGGTA
1 AAGGGTA
135054954 AAACGGTAAT
Statistics
Matches: 203, Mismatches: 37, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
25 4 0.02
26 19 0.09
27 150 0.74
28 11 0.05
29 18 0.09
30 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:135054909 original size:80 final size:80
Alignment explanation
Indices: 135054759--135054910 Score: 178
Period size: 80 Copynumber: 1.9 Consensus size: 80
135054749 TTTGTAAATC
* * * ****
135054759 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAC
*
135054824 GGTAATTTTAAAACT
66 AGTAATTTTAAAACT
* *** * *
135054839 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAC
135054904 AGTAATT
66 AGTAATT
135054911 CTGTAAATCA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAC
AGTAATTTTAAAACT
Found at i:135054954 original size:27 final size:27
Alignment explanation
Indices: 135054877--135055083 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
135054867 AGGGTATTTT
*
135054877 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
135054904 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
135054931 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
135054958 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
135054985 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
135055012 -GATAATTATGTAAATC-AGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
135055038 GGTAA-T-TATAAATCG-GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
135055062 -GATAATTCTGTAAATCG-GGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
135055084 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.01
24 19 0.12
25 2 0.01
26 27 0.17
27 112 0.70
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:135055119 original size:27 final size:26
Alignment explanation
Indices: 135055089--135055178 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
135055079 GGGTACTTTG
135055089 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
135055116 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
135055143 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
135055170 GTAATTTTA
1 GTAATTTTA
135055179 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:135055192 original size:27 final size:27
Alignment explanation
Indices: 135055089--135055193 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
135055079 GGGTACTTTG
* *
135055089 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
135055116 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
135055143 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
135055170 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
135055194 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:135057982 original size:31 final size:31
Alignment explanation
Indices: 135057922--135058001 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
135057912 TCAAACATGT
* *
135057922 ACTGGGCC-ATAGCCCTTCTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCAAATTTCATAAC
**
135057954 ACTGGGCCGAAGCCTTTTCAAATTTCATATT
1 ACTGGGCCGAAGCCTTTTCAAATTTCATAAC
135057985 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
135058002 ACGGTAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 32 0.74
32 10 0.23
33 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAATTTCATAAC
Found at i:135058270 original size:23 final size:23
Alignment explanation
Indices: 135058216--135058358 Score: 187
Period size: 23 Copynumber: 6.1 Consensus size: 23
135058206 CCTAGCCTCT
* *
135058216 TTTAATAACTTGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
135058239 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* * *
135058263 TTTAATAACTGGGACGTAAGCCT
1 TTTAATAACTGGGGCATAAGCCC
* *
135058286 TTTGATAACTGGGGTATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
135058309 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
135058333 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
135058356 TTT
1 TTT
135058359 TTCACTTCCT
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
23 62 0.60
24 42 0.40
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:135058271 original size:47 final size:48
Alignment explanation
Indices: 135058194--135058359 Score: 198
Period size: 47 Copynumber: 3.5 Consensus size: 48
135058184 TGCTTTATCA
* *
135058194 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTTGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTTGGGCATAAGCCCTTTT
*
135058243 TATAACTGGGGCATAAGCCC-TTTAATAAC-TGGGACGTAAG-CCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTTGGG-CATAAGCCCTTTT
* * * *
135058289 GATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTTGGGCATAAGCCCTTTT
*
135058336 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
135058360 TCACTTCCTC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
46 28 0.27
47 51 0.50
48 10 0.10
49 13 0.13
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTTGGGCATAAGCCCTTTT
Found at i:135058307 original size:70 final size:71
Alignment explanation
Indices: 135058209--135058359 Score: 223
Period size: 70 Copynumber: 2.1 Consensus size: 71
135058199 CTGGAGGCCT
* *
135058209 AGCCTCTTTTAATAACTTGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
*
135058274 GGACGTA
65 GGACATA
* * *
135058281 AG-CCTTTTGATAACTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
*
135058345 GGCATA
66 GACATA
135058351 AGCCCTTTT
1 AGCCCTTTT
135058360 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
70 62 0.87
71 7 0.10
72 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
GACATA
Found at i:135058432 original size:9 final size:9
Alignment explanation
Indices: 135058418--135058474 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
135058408 ATCTCGTGTG
135058418 CATATCATA
1 CATATCATA
*
135058427 CATATCATGTG
1 CATATCA--TA
135058438 CATATCATA
1 CATATCATA
* *
135058447 CATGTCATGTG
1 CATATCA--TA
135058458 CATATCATA
1 CATATCATA
135058467 CATATCAT
1 CATATCAT
135058475 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:135058437 original size:20 final size:20
Alignment explanation
Indices: 135058414--135058476 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
135058404 GAACATCTCG
135058414 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
135058434 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
135058454 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
135058474 TGT
1 TGT
135058477 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:135058555 original size:25 final size:24
Alignment explanation
Indices: 135058513--135058560 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
135058503 ATATATAAAC
* * *
135058513 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
135058538 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
135058561 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:135059774 original size:27 final size:27
Alignment explanation
Indices: 135059712--135059789 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
135059702 GGGCATATTC
135059712 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
135059739 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
135059766 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
135059790 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:135059860 original size:27 final size:27
Alignment explanation
Indices: 135059830--135060048 Score: 158
Period size: 27 Copynumber: 8.1 Consensus size: 27
135059820 GTAAATCTAC
* *
135059830 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * *
135059857 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACTAAGGGTATTT-TAGTAA-TTTTAT
* * * *
135059885 AAAGTCAAGGGTATTTTTGTAACTTTGT
1 AAACT-AAGGGTATTTTAGTAATTTTAT
* * *
135059913 AAA-TCAGGGGTATTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTTAGTAATTTTAT
* * * *
135059940 AAA-TTAGGGTA-TTTCGTAATTTCAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * *
135059965 AAACCAAGGGTATTTTGGTAATTTTAA
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * * *
135059992 AAACTAGGGGTATTTTGGTACTTTTAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
*
135060019 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTTAGTAATTTTAT
135060046 AAA
1 AAA
135060049 TCGAGGGTAA
Statistics
Matches: 151, Mismatches: 35, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
25 15 0.10
26 11 0.07
27 98 0.65
28 15 0.10
29 12 0.08
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AAACTAAGGGTATTTTAGTAATTTTAT
Found at i:135060001 original size:79 final size:81
Alignment explanation
Indices: 135059890--135060042 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 81
135059880 TTTAGAAAGT
* * *
135059890 CAAGGGTATTTTTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTAGGGTA-TT
1 CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
*
135059953 TCGTAATTTCACAAAC
66 TAGTAATTTCACAAAC
*
135059969 CAAGGGTATTTTGGTAA-TTT-TAAAAACTAGGGGTATTTTGGTACTTTTACAAACTAAGGGTAT
1 CAAGGGTATTTTGGTAACTTTGT-AAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
135060032 TTTAGTAATTT
64 TTTAGTAATTT
135060043 TGTAAATCGA
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
77 1 0.02
78 7 0.11
79 40 0.62
80 7 0.11
81 10 0.15
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTCACAAAC
Found at i:135060055 original size:27 final size:27
Alignment explanation
Indices: 135059835--135060111 Score: 143
Period size: 27 Copynumber: 10.3 Consensus size: 27
135059825 TCTACAAACT
* *
135059835 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
135059862 AATGGTATTTCTA-TAATTTT-TAGAAAGTC
1 AAGGGTATTT-TAGTAATTTTGT--AAA-TC
* *
135059891 AAGGGTATTTTTGTAACTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * **
135059918 AGGGGTATTTTGGTAATTTTACAAAT-
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * *** *
135059944 TAGGGTA-TTTCGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * *
135059970 AAGGGTATTTTGGTAATTTT-AAAAAC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * * **
135059996 TAGGGGTATTTTGGTACTTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTGTAAATC
135060023 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTGTAAATC
* **** *
135060051 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
135060078 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
135060105 GAGGGTA
1 AAGGGTA
135060112 AAACGGTAAT
Statistics
Matches: 200, Mismatches: 39, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
25 15 0.08
26 16 0.08
27 140 0.70
28 12 0.06
29 16 0.08
30 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:135060112 original size:27 final size:27
Alignment explanation
Indices: 135060036--135060244 Score: 287
Period size: 27 Copynumber: 7.8 Consensus size: 27
135060026 GGGTATTTTA
* *
135060036 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
135060063 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
135060090 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
135060117 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
135060144 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
135060171 ATAATTATGTAAATC-AGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
135060197 GTAATTATATAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
135060224 GTAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
135060245 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 29 0.18
27 133 0.82
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:135060310 original size:27 final size:27
Alignment explanation
Indices: 135060234--135060338 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 27
135060224 GTAATTCTGT
*
135060234 AAATCG-GGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
135060260 AAGTCGA-AGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
135060286 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
135060313 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
135060339 GTAAACTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.05
26 25 0.38
27 38 0.58
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:135060345 original size:28 final size:27
Alignment explanation
Indices: 135060268--135060347 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
135060258 ACAAGTCGAA
*
135060268 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGG
*
135060295 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGG
* *
135060322 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
135060348 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGG
Found at i:135063653 original size:21 final size:20
Alignment explanation
Indices: 135063609--135063652 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
135063599 TTTTTAGTCA
*
135063609 TTTTAAAAGAAAGTTTAAAT
1 TTTTAAAACAAAGTTTAAAT
*
135063629 TTTTAAAACAAAGTTTTAAT
1 TTTTAAAACAAAGTTTAAAT
135063649 TTTT
1 TTTT
135063653 TTTGACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (20 bp):
TTTTAAAACAAAGTTTAAAT
Found at i:135063782 original size:143 final size:143
Alignment explanation
Indices: 135063553--135063817 Score: 401
Period size: 143 Copynumber: 1.9 Consensus size: 143
135063543 TAGTTTTGAT
*
135063553 TTTTTTTAAAAAGAGAAATTTTAGATTTTAAAATATAAAAATATGTTTTTTAGTCATTTTAAAAG
1 TTTTTTTAAAAAGAGAAACTTTAGATTTTAAAATATAAAAATATGTTTTTTAGTCATTTTAAAAG
* * *
135063618 AAAGTTTAAATTTTTAAAACAAAGTTTTAATTTTTTTT-GACTATTTCAAAGTAAAAGCTTTATT
66 AAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTATT
135063682 AAGAAAAATAGTG
131 AAGAAAAATAGTG
* *
135063695 TTTTTTTAAAAGGAGAAACTTTAGATTTTGAAAA-ATAAAAATCTAT-TTTTTTAGTCATTTTAG
1 TTTTTTTAAAAAGAGAAACTTTAGATTTT-AAAATATAAAAA--TATGTTTTTTAGTCATTTTAA
* * *
135063758 AGGAAATTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAA
63 AAGAAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTTCAACTATTTCAAAATAAAA
135063818 TTTTGATTTT
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
142 34 0.31
143 57 0.52
144 19 0.17
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (143 bp):
TTTTTTTAAAAAGAGAAACTTTAGATTTTAAAATATAAAAATATGTTTTTTAGTCATTTTAAAAG
AAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTATT
AAGAAAAATAGTG
Found at i:135063878 original size:143 final size:142
Alignment explanation
Indices: 135063553--135063868 Score: 365
Period size: 143 Copynumber: 2.2 Consensus size: 142
135063543 TAGTTTTGAT
* *
135063553 TTTTTTTAAAAAGAGAAATTTTAGATTTT-AAAATATAAAAA--TATGTTTTTTAGTCATTTTAA
1 TTTTTTT-AAAAGAAAAACTTTAGATTTTGAAAA-ATAAAAATCTAT-TTTTTTAGTCATTTTAA
* * * *
135063615 AAGAAAGTTTAAATTTTTAAAACAAAGTTTTAATTTTTTTTGACTATTTCAAAGTAAAAGCTTTA
63 AAGAAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTTAACTATTTCAAAATAAAAGATTTA
*
135063680 TTAAGAAAAATAGTG
128 TTAAGAAAAATAATG
* * *
135063695 TTTTTTTAAAAGGAGAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAGAG
1 TTTTTTTAAAA-GAAAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAAAA
* *
135063760 GAAATTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAATTTTGAT
65 GAAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTT-AACTATTTCAAAATAAAA----GAT
**
135063825 TT-TTAAGAAACGTAATG
125 TTATTAAGAAAAATAATG
135063842 ATTTCTTTTAAAA-AAAAACTTT-GATTT
1 -TTT-TTTTAAAAGAAAAACTTTAGATTT
135063869 CACAAAAAAA
Statistics
Matches: 150, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
141 4 0.03
142 30 0.20
143 57 0.38
144 19 0.13
146 5 0.03
147 20 0.13
148 7 0.05
149 8 0.05
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (142 bp):
TTTTTTTAAAAGAAAAACTTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTCATTTTAAAAG
AAAGTTTAAATTTTTAAAACAAAATTTTAATTTTTTTTAACTATTTCAAAATAAAAGATTTATTA
AGAAAAATAATG
Found at i:135070312 original size:40 final size:40
Alignment explanation
Indices: 135070216--135070357 Score: 110
Period size: 40 Copynumber: 3.6 Consensus size: 40
135070206 AATCACGTAC
* * * * *
135070216 CTTCGGGAT-TTAA-CCGGATATAGCGACTCGCTCGATTGT
1 CTTCGGG-TCTTAACCCGGATATAGTGATTCGCACAATTGA
* * * *
135070255 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGA
1 CTTCGGGTCTTAACCCGGATATAGTGATTCGCACAATTGA
* * * * *
135070295 CTTCGGGTCTTAACCCGGATTTGGTAACTT-GCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAGTGA-TTCGCACAATTGA
*
135070335 CTTCGGGTCTTAGCCCGGATATA
1 CTTCGGGTCTTAACCCGGATATA
135070358 ACAACTAGCA
Statistics
Matches: 79, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
39 9 0.11
40 68 0.86
41 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.30
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAGTGATTCGCACAATTGA
Found at i:135070374 original size:40 final size:40
Alignment explanation
Indices: 135070329--135070509 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
135070319 TAACTTGCAC
* *
135070329 AAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTAGCAT
* * *
135070369 GAATGCCTTCGGGTCTTAGCTCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
*
135070409 AAATGCCTTCGAGACTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
*
135070449 AAATGCCTTCGGGACTTAGCCCGGTTATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
135070489 AAATGCCTTCGGGACTTAGCC
1 AAATGCCTTCGGGACTTAGCC
135070510 TGGGTATCAT
Statistics
Matches: 131, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
40 130 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
Found at i:135070379 original size:80 final size:80
Alignment explanation
Indices: 135070255--135070509 Score: 289
Period size: 80 Copynumber: 3.2 Consensus size: 80
135070245 GCTCGATTGT
* * * * * * * * * **
135070255 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGACTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAAT
* * *
135070320 AACTTGCACAAATGC
66 CACTAGCATAAATGC
* * * *
135070335 CTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACGAATGCCTTCGGGTCTTAGCTCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAA
135070399 TCACTAGCATAAATGC
65 TCACTAGCATAAATGC
* * *
135070415 CTTCGAGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG-TTATAA
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATT-TAA
135070479 TCACTAGCATAAATGC
65 TCACTAGCATAAATGC
135070495 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
135070510 TGGGTATCAT
Statistics
Matches: 146, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 144 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAAT
CACTAGCATAAATGC
Found at i:135078409 original size:40 final size:39
Alignment explanation
Indices: 135078365--135078557 Score: 165
Period size: 40 Copynumber: 4.8 Consensus size: 39
135078355 TAGTGATTCA
* * * *** *
135078365 CACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTTG
1 CACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
135078405 CACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
1 CAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
*
135078445 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAG
1 CAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCG
* * * * *
135078485 CATAAATGCCTTCGAGACTTAGCCTGGATATAATC-ACTAG
1 CA-CAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCG
* * *
135078525 CATAAATGCCTTCGGGACTTAGCCCGGTTATAA
1 CA-CAATGCCTTCGGGTCTTAGCCCGGATATAA
135078558 TCACTAGCAT
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 131 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
CACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
Found at i:135078533 original size:80 final size:80
Alignment explanation
Indices: 135078365--135078573 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
135078355 TAGTGATTCA
* * * * ** * * * * *
135078365 CACAATTGCCTTTGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCC
*
135078430 GGATATAACAACTCG
66 GGATATAACAACTAG
* *
135078445 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCT
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCC
135078510 GGATATAATC-ACTAG
66 GGATATAA-CAACTAG
* * *
135078525 CATAAATGCCTTCGGGACTTAGCCCGGTTATAATCACTAGCATAAATGC
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
135078574 TCATTTACAC
Statistics
Matches: 110, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (80 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCC
GGATATAACAACTAG
Found at i:135078558 original size:40 final size:40
Alignment explanation
Indices: 135078408--135078573 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
135078398 TAACTTGCAC
* * *
135078408 AAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTAGCAT
* *
135078448 GAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
* *
135078488 AAATGCCTTCGAGACTTAGCCTGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
*
135078528 AAATGCCTTCGGGACTTAGCCCGGTTATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
135078568 AAATGC
1 AAATGC
135078574 TCATTTACAC
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 114 0.99
41 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCAT
Found at i:135085804 original size:42 final size:42
Alignment explanation
Indices: 135085758--135085851 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
135085748 GTCTCAAACG
* ** **
135085758 TGGTCTTATATGAGATCTCACATTGATGCCATATCCCAGATA
1 TGGTCTTATATGAAATCTCACATCAACACCATATCCCAGATA
* *
135085800 TGGTCTTATATGAAATCTCATATCAACATCATATCCCAGATA
1 TGGTCTTATATGAAATCTCACATCAACACCATATCCCAGATA
135085842 TGGTCTTATA
1 TGGTCTTATA
135085852 CAAGACCTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (42 bp):
TGGTCTTATATGAAATCTCACATCAACACCATATCCCAGATA
Found at i:135089040 original size:13 final size:13
Alignment explanation
Indices: 135089022--135089047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
135089012 TATCCTTCAG
135089022 TAGAGATACTGCA
1 TAGAGATACTGCA
135089035 TAGAGATACTGCA
1 TAGAGATACTGCA
135089048 CATTTTAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
TAGAGATACTGCA
Found at i:135095576 original size:40 final size:39
Alignment explanation
Indices: 135095375--135095576 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 39
135095365 CGGAGTTTAA
** *
135095375 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGACTTAGC
* *
135095414 CC-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
135095453 CC-GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * * *
135095492 CCGAATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
135095532 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
135095572 CCGGA
1 CCGGA
135095577 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 25 0.18
39 42 0.30
40 62 0.44
41 10 0.07
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:135103587 original size:40 final size:40
Alignment explanation
Indices: 135103550--135103735 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
135103540 GCTACTCGTT
*
135103550 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
135103590 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
135103630 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
135103670 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
135103711 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
135103736 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:135105954 original size:40 final size:40
Alignment explanation
Indices: 135105846--135106055 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
135105836 CGGGATTTAA
* * * * *
135105846 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
135105886 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135105926 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135105966 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135106006 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135106046 CCGGATATAT
1 CCGGATATAT
135106056 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:135114079 original size:168 final size:166
Alignment explanation
Indices: 135113848--135114249 Score: 563
Period size: 168 Copynumber: 2.4 Consensus size: 166
135113838 AATCTTAACC
* * * *
135113848 CCCTAAGCAGTAGGGAAACAGATTGAAGATGACGAGACCATAAACCCCTAAGCAGTAGGGTAACG
1 CCCTAAGCAGTAGGG-AACAGA-TCAA-A-GACGAAACCTTAAACCCCTAAGCAGTAGGGTAACA
*
135113913 GGTTGAACTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
62 AGTTGAACTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
* ***
135113978 CCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCT
127 CCCTAAGCAGTA-GGTAACAGGTTGAATTACAGATC-TAAAA
* *
135114020 CCCTAAGCAGTAGTGG-GCAGATCGAAGACGAAACCTTAAACCCCTAAGCAGTAGGGTAACAAGT
1 CCCTAAGCAGTAG-GGAACAGATCAAAGACGAAACCTTAAACCCCTAAGCAGTAGGGTAACAAGT
*
135114084 TGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCC
65 TGAACTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCC
135114149 TAAGCAGTAGGTAACAGGTTGAATTACAGATCTAAAA
130 TAAGCAGTAGGTAACAGGTTGAATTACAGATCTAAAA
* * * *
135114186 CCCTAAGCAGTAGGGAAACAGATCAAAGATGACAAGCCTGAATCCCCTAAACAGTAGGGTAACA
1 CCCTAAGCAGTAGGG-AACAGATCAAAGACGA-AA-CCTTAAACCCCTAAGCAGTAGGGTAACA
135114250 GGCTGGAAAT
Statistics
Matches: 207, Mismatches: 18, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
165 2 0.01
166 15 0.07
167 34 0.16
168 109 0.53
169 26 0.13
170 2 0.01
171 4 0.02
172 13 0.06
173 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (166 bp):
CCCTAAGCAGTAGGGAACAGATCAAAGACGAAACCTTAAACCCCTAAGCAGTAGGGTAACAAGTT
GAACTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAACCCT
AAGCAGTAGGTAACAGGTTGAATTACAGATCTAAAA
Found at i:135114091 original size:83 final size:85
Alignment explanation
Indices: 135113839--135114251 Score: 527
Period size: 83 Copynumber: 4.9 Consensus size: 85
135113829 AAATTTACAA
* * * * * *
135113839 ATCTTAACCCCCTAAGCAGTAG-GGAAACAGATTGAAGATGACGAGACCATAAACCCCTAAGCAG
1 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA-GA-ACCTTAAACCCCTAAGCAG
* *
135113903 TAGGGTAACGGGTTGAACTGCAG
63 TAGGGTAACAGGTTGAATTGCAG
135113926 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA-CCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-AGAACCTTAAACCCCTAAGCAGTA
135113990 GGGTAACAGGTTGAATTGCAG
65 GGGTAACAGGTTGAATTGCAG
135114011 ATCTTATCTCCCTAAGCAGTAGTGG-GCAGATCGAAGACGA-AACCTTAAACCCCTAAGCAGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAGAACCTTAAACCCCTAAGCAGTAG
*
135114074 GGTAACAAGTTGAATTGCAG
66 GGTAACAGGTTGAATTGCAG
135114094 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA-CCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG-AGAACCTTAAACCCCTAAGCAGTA
*
135114158 -GGTAACAGGTTGAATTACAG
65 GGGTAACAGGTTGAATTGCAG
*** * * * * * * *
135114178 ATC-TAAAACCCTAAGCAGTAG-GGAAACAGATCAAAGATGACAAGCCTGAATCCCCTAAACAGT
1 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAGAA-CCTTAAACCCCTAAGCAGT
135114241 AGGGTAACAGG
64 AGGGTAACAGG
135114252 CTGGAAATTA
Statistics
Matches: 295, Mismatches: 21, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
82 14 0.05
83 90 0.31
84 60 0.20
85 78 0.26
86 16 0.05
87 34 0.12
88 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (85 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAGAACCTTAAACCCCTAAGCAGTAG
GGTAACAGGTTGAATTGCAG
Found at i:135115775 original size:35 final size:35
Alignment explanation
Indices: 135115708--135115875 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
135115698 TCCTCATTGA
*** *
135115708 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
135115744 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
135115784 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
135115819 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
135115854 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
135115876 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:135115834 original size:75 final size:73
Alignment explanation
Indices: 135115703--135115875 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
135115693 GGTTTTCCTC
*** * * **
135115703 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
135115768 TCAGTATGG
65 TCAGTATGG
*
135115777 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
135115841 ACTCAGTATGG
63 ACTCAGTATGG
135115852 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
135115876 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Done.