Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 441 of 770
Found at i:135722114 original size:20 final size:21
Alignment explanation
Indices: 135722089--135722128 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
135722079 CACTTCAAAT
135722089 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
135722109 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
135722129 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:135733155 original size:49 final size:49
Alignment explanation
Indices: 135733094--135733271 Score: 250
Period size: 49 Copynumber: 3.6 Consensus size: 49
135733084 ATTAAAGTCA
* *
135733094 ATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAGACCG
1 ATGCCATATCCCAGACAGGTCTTACACTGACTTTCATATATCGAGACCG
135733143 ATGCCATATCCCAGACAGGTCTTACACTGACTTTCATATATCGAGACCG
1 ATGCCATATCCCAGACAGGTCTTACACTGACTTTCATATATCGAGACCG
* * * * **
135733192 ATGCCATATCCCAGACAGGTCTTACACTGGCTCTCCTCTATCG-GTGTCG
1 ATGCCATATCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-ACCG
* *
135733241 ATGCCGTGTCCCAGACAGGTCTTACACTGAC
1 ATGCCATATCCCAGACAGGTCTTACACTGAC
135733272 ACACAACAAG
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 1 0.01
49 116 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
ATGCCATATCCCAGACAGGTCTTACACTGACTTTCATATATCGAGACCG
Found at i:135733396 original size:46 final size:45
Alignment explanation
Indices: 135733334--135733462 Score: 163
Period size: 46 Copynumber: 2.8 Consensus size: 45
135733324 CCCGAGGCTG
*
135733334 ATGCATGTCCCGGACATGTCTTACACTAGCTCTCATCTCAA-T-GCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AAGTGGCCA
* *
135733380 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCCA
* *
135733426 ATGCATGTCCCAGACATGTCCTACACTAGCTCACATA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
135733463 CGGCCCGATG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 70 0.95
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCCA
Found at i:135736752 original size:15 final size:15
Alignment explanation
Indices: 135736720--135736748 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
135736710 ATTTTCTGTG
135736720 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
135736735 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
135736749 ATTTTCGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:135737992 original size:41 final size:42
Alignment explanation
Indices: 135737886--135737993 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
135737876 ATATGTGTTC
* * *
135737886 TCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGAT
1 TCATGTAAGACCATGTCTGGGACATTGACATCGATTTGTGAT
* * *
135737928 TACATGTAAAACCATGTCCGGGACATTGACCTCG-TATT-TGAT
1 T-CATGTAAGACCATGTCTGGGACATTGACATCGAT-TTGTGAT
*
135737970 TCATGTAAGACCTTGTCTGGGACA
1 TCATGTAAGACCATGTCTGGGACA
135737994 GTGGCACCGA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 20 0.36
42 7 0.13
43 28 0.51
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TCATGTAAGACCATGTCTGGGACATTGACATCGATTTGTGAT
Found at i:135742412 original size:18 final size:20
Alignment explanation
Indices: 135742376--135742422 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
135742366 AATTGTAAGT
135742376 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
135742396 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
135742415 ATGATATA
1 AT-ATATA
135742423 ACCTGCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:135744118 original size:79 final size:81
Alignment explanation
Indices: 135744017--135744201 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
135744007 ACGACTCGCT
** * * *
135744017 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACGAATGCCTTC-GGATCCTAACCC
* *
135744080 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
135744097 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCACACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAATGCCTTCGGATCCTAACCCGG
*
135744161 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
135744177 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
135744202 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:135744201 original size:40 final size:40
Alignment explanation
Indices: 135744017--135744201 Score: 146
Period size: 40 Copynumber: 4.6 Consensus size: 40
135744007 ACGACTCGCT
** * * *
135744017 CAAATGCCTTCGGGACGAAGCCCGGTTATAGTGAC-TCGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
135744057 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTT-GCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
135744097 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCA-CA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
135744136 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
135744177 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
135744202 CATCATTCGA
Statistics
Matches: 114, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 74 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:135745871 original size:40 final size:40
Alignment explanation
Indices: 135745763--135745972 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
135745753 CGGGATTTAA
* * * * *
135745763 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
135745803 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135745843 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135745883 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135745923 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
135745963 CCGGATATAT
1 CCGGATATAT
135745973 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:135759972 original size:27 final size:28
Alignment explanation
Indices: 135759916--135759985 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
135759906 AAATTTGTAC
135759916 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
135759944 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
135759971 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
135759986 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:135759996 original size:27 final size:27
Alignment explanation
Indices: 135759916--135759997 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
135759906 AAATTTGTAC
* *
135759916 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
135759944 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
135759971 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
135759998 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:135762238 original size:30 final size:30
Alignment explanation
Indices: 135762202--135762302 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
135762192 GACAAGATTG
* * *
135762202 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
135762232 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
135762260 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
135762289 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
135762303 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:135762296 original size:29 final size:29
Alignment explanation
Indices: 135762202--135762302 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
135762192 GACAAGATTG
* * * *
135762202 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
135762232 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
135762260 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
135762289 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
135762303 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:135769192 original size:27 final size:27
Alignment explanation
Indices: 135769147--135769302 Score: 185
Period size: 27 Copynumber: 5.8 Consensus size: 27
135769137 AGGCTGCCAA
* * *
135769147 ATATTGTGACGGAGTCACCAGATACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
135769174 ATATTGTGGCAGAGCCACCAGA-ACAG
1 ATATTGTGGCAGAGCCACCAGATACAG
*
135769200 ATATATGTGGCAGAGCCACCAGAT-CAT
1 ATAT-TGTGGCAGAGCCACCAGATACAG
* *
135769227 ATAATTGTGGCATAGCCACCAG-GACAG
1 AT-ATTGTGGCAGAGCCACCAGATACAG
135769254 ATATATGTGGCAGAGCCACCAGAT-CAG
1 ATAT-TGTGGCAGAGCCACCAGATACAG
*
135769281 ATAATTGTGGCATAGCCACCAG
1 AT-ATTGTGGCAGAGCCACCAG
135769303 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 98 0.88
28 4 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
ATATTGTGGCAGAGCCACCAGATACAG
Found at i:135769303 original size:54 final size:54
Alignment explanation
Indices: 135769162--135769305 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
135769152 GTGACGGAGT
* *
135769162 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
135769216 CACCAGATCATATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
135769270 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
135769306 GCTTCCTCTA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:135784283 original size:31 final size:27
Alignment explanation
Indices: 135784217--135784289 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
135784207 TATAGTGAGT
* *
135784217 CCGCACACTTAGTGCTATATAATCAAC
1 CCGCACACTTAGTGCTATAAAATAAAC
*
135784244 TCGCACACTTAGTGCTATACAAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AAA---TAAAC
135784275 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
135784290 CATTCTCATG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 18 0.47
28 2 0.05
31 18 0.47
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
CCGCACACTTAGTGCTATAAAATAAAC
Found at i:135788727 original size:68 final size:70
Alignment explanation
Indices: 135788655--135788852 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
135788645 ACACCCTGTA
* * * *
135788655 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
135788717 ATAAAT
65 ATAAAT
*
135788723 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
135788788 ATAAAT
65 ATAAAT
*
135788794 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
135788853 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:135788766 original size:41 final size:41
Alignment explanation
Indices: 135788721--135788838 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
135788711 TGAAAGATAA
135788721 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
135788762 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
135788792 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
135788833 ATGTAG
1 ATGTAG
135788839 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:135788778 original size:71 final size:71
Alignment explanation
Indices: 135788689--135788852 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
135788679 GAGATGTATC
135788689 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
135788754 AGGACA
66 AGGACA
135788760 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
135788825 AGGACA
66 AGGACA
135788831 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
135788853 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:135796339 original size:40 final size:39
Alignment explanation
Indices: 135796244--135796450 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
135796234 CGGAATACAA
* *
135796244 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* *
135796283 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* *
135796323 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
135796363 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
135796403 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
135796443 CCGGATAT
1 CCGGATAT
135796451 CATTCAATTG
Statistics
Matches: 141, Mismatches: 23, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 25 0.18
40 114 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:135797879 original size:20 final size:20
Alignment explanation
Indices: 135797849--135797899 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
135797839 AAAGGGGGAA
135797849 TTTGACATGCAAGTCCATTGT
1 TTTG-CATGCAAGTCCATTGT
135797870 TTTGCATGCAAGTCCATTGT
1 TTTGCATGCAAGTCCATTGT
135797890 TTTGCATGCA
1 TTTGCATGCA
135797900 TGCTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 26 0.87
21 4 0.13
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (20 bp):
TTTGCATGCAAGTCCATTGT
Found at i:135802144 original size:40 final size:40
Alignment explanation
Indices: 135802042--135802225 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
135802032 AAATTGAATG
* * * * * *
135802042 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
135802082 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
135802122 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
135802162 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
135802202 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
135802226 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:135802250 original size:80 final size:80
Alignment explanation
Indices: 135802082--135802270 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
135802072 GCTGGAAATT
* * *
135802082 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
135802147 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
135802162 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
135802225 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
135802242 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
135802271 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:135810184 original size:39 final size:40
Alignment explanation
Indices: 135810126--135810226 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 40
135810116 AAATTGAATG
* * *
135810126 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
135810166 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
135810205 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
135810227 GCATTCGTGC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 31 0.61
40 20 0.39
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:135810221 original size:40 final size:40
Alignment explanation
Indices: 135810126--135810308 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
135810116 AAATTGAATG
* * * * * *
135810126 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
135810166 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
135810205 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
135810245 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
135810285 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
135810309 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 34 0.29
40 83 0.70
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:135813242 original size:28 final size:27
Alignment explanation
Indices: 135813179--135813248 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
135813169 ATAGTGAGTC
*
135813179 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
135813206 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
135813234 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
135813249 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:135822484 original size:27 final size:27
Alignment explanation
Indices: 135822427--135822486 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
135822417 ATACATCTCA
*
135822427 TAGGGGCATATCAGTCATTTGACCATG
1 TAGGGGCATATCAGTCATTTGACAATG
* *
135822454 TAGGGGCATTTCAGTCATTTTATCAAT-
1 TAGGGGCATATCAGTCATTTGA-CAATG
135822481 TAGGGG
1 TAGGGG
135822487 GTCTAGATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (27 bp):
TAGGGGCATATCAGTCATTTGACAATG
Found at i:135822592 original size:17 final size:17
Alignment explanation
Indices: 135822570--135822612 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
135822560 ATAGTAAAAA
135822570 TGGGCCCACGGCCCATG
1 TGGGCCCACGGCCCATG
135822587 TGGGCCCACGGCCCATG
1 TGGGCCCACGGCCCATG
135822604 TGGGCCCAC
1 TGGGCCCAC
135822613 ATAGCCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.12, C:0.42, G:0.35, T:0.12
Consensus pattern (17 bp):
TGGGCCCACGGCCCATG
Found at i:135824872 original size:4 final size:4
Alignment explanation
Indices: 135824863--135824895 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
135824853 CACGGTCGCG
135824863 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
135824896 GTTTTATGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:135825016 original size:28 final size:28
Alignment explanation
Indices: 135824968--135825032 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
135824958 AAGTCTACAT
*
135824968 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* * *
135824996 TCTTTCATATGGCCCATTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
135825024 ACATTCATA
1 ACATTCATA
135825033 GTCATGCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:135829043 original size:30 final size:30
Alignment explanation
Indices: 135828987--135829045 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
135828977 TGTGAATTAG
*
135828987 GGACTAAATTGTCAAAATGTGAAAATATGA
1 GGACTAAATTGTCAAAATGTCAAAATATGA
* *
135829017 GGACTAATTTGT-AAAATGTCCTAAATATG
1 GGACTAAATTGTCAAAATGT-CAAAATATG
135829046 TGTATATGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (30 bp):
GGACTAAATTGTCAAAATGTCAAAATATGA
Found at i:135829375 original size:40 final size:40
Alignment explanation
Indices: 135829311--135829402 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
135829301 ACTATGTTCT
135829311 GCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAAT-A-
1 GCACTAAGTGTGCGATTTGAAATAGCTTCGGCTAT--ATGAG
* * *
135829351 GCACTAAGTGTGCGTTTTGGAATAGCTTTGGCTATATGAG
1 GCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATATGAG
135829391 GCACTAAGTGTG
1 GCACTAAGTGTG
135829403 TGACACTGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 44 0.94
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (40 bp):
GCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATATGAG
Found at i:135829849 original size:26 final size:26
Alignment explanation
Indices: 135829813--135829864 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
135829803 ATAAAGCTAG
135829813 CTCAAATCGGGGATCGTCAGTGACTC
1 CTCAAATCGGGGATCGTCAGTGACTC
135829839 CTCAAATCGGGGATCGTCAGTGACTC
1 CTCAAATCGGGGATCGTCAGTGACTC
135829865 ATTCACACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (26 bp):
CTCAAATCGGGGATCGTCAGTGACTC
Found at i:135831561 original size:43 final size:43
Alignment explanation
Indices: 135831495--135831585 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
135831485 TACTCTTTAT
*
135831495 TAATCAAATATGAAAACTTTGCACAGATAAACCAATAAACTCC
1 TAATAAAATATGAAAACTTTGCACAGATAAACCAATAAACTCC
135831538 TAATAAAATATGAAAACTTTGCACAGATAAACCAATAAACTCC
1 TAATAAAATATGAAAACTTTGCACAGATAAACCAATAAACTCC
135831581 TAATA
1 TAATA
135831586 CATCATATCG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.51, C:0.19, G:0.07, T:0.24
Consensus pattern (43 bp):
TAATAAAATATGAAAACTTTGCACAGATAAACCAATAAACTCC
Found at i:135833780 original size:14 final size:15
Alignment explanation
Indices: 135833761--135833790 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
135833751 ATATTTGACT
135833761 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
135833775 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
135833790 T
1 T
135833791 TTGAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:135838190 original size:16 final size:16
Alignment explanation
Indices: 135838169--135838210 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
135838159 TCCCATATTA
135838169 TCATTCTCATATGCAT
1 TCATTCTCATATGCAT
* *
135838185 TCATTCAC-TAGGCAT
1 TCATTCTCATATGCAT
135838200 T-ATTCTCATAT
1 TCATTCTCATAT
135838211 TCCTATTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 5 0.24
15 9 0.43
16 7 0.33
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (16 bp):
TCATTCTCATATGCAT
Found at i:135847413 original size:27 final size:26
Alignment explanation
Indices: 135847365--135847424 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
135847355 GCGAGGCTGC
*
135847365 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
135847392 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
135847418 CAGATAT
1 CAGATAT
135847425 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:135847428 original size:2 final size:2
Alignment explanation
Indices: 135847421--135847448 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
135847411 ACCAGAACAG
135847421 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135847449 GTGGCGAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:135847529 original size:27 final size:26
Alignment explanation
Indices: 135847482--135847532 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
135847472 CGAGGCTGCT
*
135847482 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
135847508 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
135847533 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:135850968 original size:727 final size:727
Alignment explanation
Indices: 135849573--135851029 Score: 2725
Period size: 727 Copynumber: 2.0 Consensus size: 727
135849563 GCTTCCTTCA
135849573 ACTGGTCTCTAATCAACTTGACCTTATCCTCAGTATCTGCCACCAACTCAGGTCTAAGAACCTGT
1 ACTGGTCTCTAATCAACTTGACCTTATCCTCAGTATCTGCCACCAACTCAGGTCTAAGAACCTGT
*
135849638 CGTTCATGGAACTCGGTCCAACAAGTAGGTGTACGACATCTTCGCCCATAAAGTGCCTCATAAGG
66 CGTTCATGGAACTCGGTCCAACAAGTAGGTGTACGACATCTTCGCCCATAAAGTGCCTCAAAAGG
*
135849703 AGCCATTTGAATACTTGCCTGATAACTATTGTTGTATGCAAACTCTGCCAACGGTAAGTAATCCT
131 AGCCATTCGAATACTTGCCTGATAACTATTGTTGTATGCAAACTCTGCCAACGGTAAGTAATCCT
135849768 CCCAACTGCCTCGAAAGTCGATAACACATCCCCTCAACATGTCTTCCAGAATTTGAATAACCATT
196 CCCAACTGCCTCGAAAGTCGATAACACATCCCCTCAACATGTCTTCCAGAATTTGAATAACCATT
* *
135849833 TTCGACTGACCATCAGTCTGAGGATGAAAGGCTGTACTAAAGTTCAACCGCGTACCCAACGCCTT
261 TCCGACTGACCATCAGTCTGAGGATGAAAGGCTATACTAAAGTTCAACCGCGTACCCAACGCCTT
135849898 ATGCAACCTTTTACAAAACTGAGATGTGAATCTAGGATCTCGATCAGAAATAATCAACACTGGCA
326 ATGCAACCTTTTACAAAACTGAGATGTGAATCTAGGATCTCGATCAGAAATAATCAACACTGGCA
* *
135849963 CTCCGTGAAGTCGCACTATTTCCGCCACATACAATTTGGCTAACTTCTGAAGTTAATAATCAGTG
391 CCCCGTGAAGTCGCACTATTTCCGCCACATACAATTTGGCTAACTTCTGAAGTCAATAATCAGTG
135850028 CGGACAGGTATAAAATGAGCAGATTTGGTCAACCTATTCCCAATTACCCAAATCGAGTCCTTCTT
456 CGGACAGGTATAAAATGAGCAGATTTGGTCAACCTATTCCCAATTACCCAAATCGAGTCCTTCTT
**
135850093 CGACAGTGTCAAGGTTAACCCACTCACAAAATCCATGGTTACCCTCTCCCACTTCCAAAGTGGTA
521 CGACAGTGTCAAGGGCAACCCACTCACAAAATCCATGGTTACCCTCTCCCACTTCCAAAGTGGTA
*
135850158 CTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGATGTTCAGCTTTTACTTGCTGACAAGTCAGA
586 CTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGATGTTCAGCTTTCACTTGCTGACAAGTCAGA
* *
135850223 CATTTTCCCACAACTTCCGTTACCTCTCATTTCAATCCAGGCCACCAATACAACTCCTTTAAGTC
651 CATTTTCCCACAACTTCCGTTACCTCTCACTTCAATCCAGGCCACCAATACAACTCCTTTAAATC
135850288 ACGATACATTTT
716 ACGATACATTTT
135850300 ACTGGTCTCTAATCAACTTGACCTTATCCTCAGTATCTGCCACCAACTCAGGTCTAAGAACCTGT
1 ACTGGTCTCTAATCAACTTGACCTTATCCTCAGTATCTGCCACCAACTCAGGTCTAAGAACCTGT
* *
135850365 CGTTCATGGAACTCGGTCCAGCAAGTAGGTGTACGATATCTTCGCCCATAAAGTGCCTCAAAAGG
66 CGTTCATGGAACTCGGTCCAACAAGTAGGTGTACGACATCTTCGCCCATAAAGTGCCTCAAAAGG
135850430 AGCCATTCGAATACTTGCCTGATAACTATTGTTGTATGCAAACTCTGCCAACGGTAAGTAATCCT
131 AGCCATTCGAATACTTGCCTGATAACTATTGTTGTATGCAAACTCTGCCAACGGTAAGTAATCCT
*
135850495 CCCAACTGCCTCGAAAGTCGATAACACATCCCCTCAACATGTCTTCCAGAATTTGAATAACCCTT
196 CCCAACTGCCTCGAAAGTCGATAACACATCCCCTCAACATGTCTTCCAGAATTTGAATAACCATT
135850560 TCCGACTGACCATCAGTCTGAGGATGAAAGGCTATACTAAAGTTCAACCGCGTACCCAACGCCTT
261 TCCGACTGACCATCAGTCTGAGGATGAAAGGCTATACTAAAGTTCAACCGCGTACCCAACGCCTT
135850625 ATGCAACCTTTTACAAAACTGAGATGTGAATCTAGGATCTCGATCAGAAATAATCAACACTGGCA
326 ATGCAACCTTTTACAAAACTGAGATGTGAATCTAGGATCTCGATCAGAAATAATCAACACTGGCA
*
135850690 CCCCGTGAAGTCGCACTATTTCCGCCACATACAATTTGGCTAACTTCTGAAGTCAATAATTAGTG
391 CCCCGTGAAGTCGCACTATTTCCGCCACATACAATTTGGCTAACTTCTGAAGTCAATAATCAGTG
* *
135850755 CGGACAGGTATGAAATGAGCAGATTTGGTTAACCTATTCCCAATTACCCAAATCGAGTCCTTCTT
456 CGGACAGGTATAAAATGAGCAGATTTGGTCAACCTATTCCCAATTACCCAAATCGAGTCCTTCTT
*
135850820 CGACAGTGTCAAGGGCAACCCACTCACAAAATCCATGGTTACCCTTTCCCACTTCCAAAGTGGTA
521 CGACAGTGTCAAGGGCAACCCACTCACAAAATCCATGGTTACCCTCTCCCACTTCCAAAGTGGTA
*
135850885 CTTTCACTGGCTGCAAAAGTCCGGAAGGTAATTGATGTTCAGCTTTCACTTGCTGACAAGTCAGA
586 CTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGATGTTCAGCTTTCACTTGCTGACAAGTCAGA
* *
135850950 CATTTTCCCATAACTTCCGTTACCTCTCGCTTCAATCCAGGCCACCAATACAACTCCTTTAAATC
651 CATTTTCCCACAACTTCCGTTACCTCTCACTTCAATCCAGGCCACCAATACAACTCCTTTAAATC
135851015 ACGATACATTTT
716 ACGATACATTTT
135851027 ACT
1 ACT
135851030 CCCTCCAGGA
Statistics
Matches: 709, Mismatches: 21, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
727 709 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (727 bp):
ACTGGTCTCTAATCAACTTGACCTTATCCTCAGTATCTGCCACCAACTCAGGTCTAAGAACCTGT
CGTTCATGGAACTCGGTCCAACAAGTAGGTGTACGACATCTTCGCCCATAAAGTGCCTCAAAAGG
AGCCATTCGAATACTTGCCTGATAACTATTGTTGTATGCAAACTCTGCCAACGGTAAGTAATCCT
CCCAACTGCCTCGAAAGTCGATAACACATCCCCTCAACATGTCTTCCAGAATTTGAATAACCATT
TCCGACTGACCATCAGTCTGAGGATGAAAGGCTATACTAAAGTTCAACCGCGTACCCAACGCCTT
ATGCAACCTTTTACAAAACTGAGATGTGAATCTAGGATCTCGATCAGAAATAATCAACACTGGCA
CCCCGTGAAGTCGCACTATTTCCGCCACATACAATTTGGCTAACTTCTGAAGTCAATAATCAGTG
CGGACAGGTATAAAATGAGCAGATTTGGTCAACCTATTCCCAATTACCCAAATCGAGTCCTTCTT
CGACAGTGTCAAGGGCAACCCACTCACAAAATCCATGGTTACCCTCTCCCACTTCCAAAGTGGTA
CTTTCACTGGCTACAAAAGTCCGGAAGGTAATTGATGTTCAGCTTTCACTTGCTGACAAGTCAGA
CATTTTCCCACAACTTCCGTTACCTCTCACTTCAATCCAGGCCACCAATACAACTCCTTTAAATC
ACGATACATTTT
Found at i:135855674 original size:27 final size:28
Alignment explanation
Indices: 135855609--135855677 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
135855599 AATGAGATTG
*
135855609 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
*
135855637 GCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
135855664 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
135855678 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:135855686 original size:27 final size:27
Alignment explanation
Indices: 135855609--135855687 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
135855599 AATGAGATTG
* * *
135855609 GCACTAAGTGTGCGAGTTTAAT-TGTATA
1 GCACTAAGTGTGCGACTTGACTAT-TA-A
*
135855637 GCACTAAGTGTGCGAGTTGACTATTAA
1 GCACTAAGTGTGCGACTTGACTATTAA
135855664 GCACTAAGTGTGCGGACTT-ACTAT
1 GCACTAAGTGTGC-GACTTGACTAT
135855688 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 19 0.41
28 26 0.57
29 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGACTATTAA
Found at i:135858563 original size:2 final size:2
Alignment explanation
Indices: 135858556--135858595 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
135858546 CCACCAGAAC
135858556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135858596 GTGGCGAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:135872791 original size:40 final size:40
Alignment explanation
Indices: 135872746--135872875 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
135872736 CGGAATACAA
135872746 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
135872786 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
135872826 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
135872866 CCGGATATAA
1 CCGGATATAA
135872876 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:135872890 original size:40 final size:40
Alignment explanation
Indices: 135872746--135872913 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
135872736 CGGAATACAA
* **
135872746 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
135872786 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
135872826 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
135872866 CCGGATATAATTTCCAGCATAATTGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
135872906 CCGGATAT
1 CCGGATAT
135872914 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:135877612 original size:79 final size:81
Alignment explanation
Indices: 135877484--135877667 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
135877474 GCTACTCGTT
* * *
135877484 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATCCTTC-GGATCTTAACCCG
* *
135877547 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
135877563 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAT-CCTTCGGATCTTAACCCG
*
135877626 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
135877643 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
135877668 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 28 0.30
79 45 0.49
80 19 0.21
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:135877667 original size:40 final size:40
Alignment explanation
Indices: 135877465--135877667 Score: 238
Period size: 39 Copynumber: 5.1 Consensus size: 40
135877455 CGGAATTTAA
** *
135877465 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
135877505 CCGGTTATAGTAACTCGCATAAAT-CCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
135877544 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
135877583 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
135877623 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
135877663 CCGGA
1 CCGGA
135877668 CATCATTCGA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 58 0.41
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:135879269 original size:40 final size:40
Alignment explanation
Indices: 135879224--135879353 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
135879214 CGGAATACAA
135879224 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
135879264 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
135879304 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
135879344 CCGGATATAA
1 CCGGATATAA
135879354 TTTCCAGCAA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:135881640 original size:2 final size:2
Alignment explanation
Indices: 135881633--135881668 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
135881623 CCTTGAGATG
135881633 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
135881669 GTCATACCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:135893908 original size:25 final size:25
Alignment explanation
Indices: 135893879--135893926 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
135893869 TTATAATATG
* * *
135893879 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
135893904 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
135893927 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:135893995 original size:20 final size:20
Alignment explanation
Indices: 135893970--135894028 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
135893960 TAAATATGGT
135893970 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
135893990 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
135894010 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
135894029 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:135894010 original size:11 final size:11
Alignment explanation
Indices: 135893974--135894028 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
135893964 TATGGTATGT
135893974 ATGATATGCAC
1 ATGATATGCAC
* *
135893985 ATGAAATG--T
1 ATGATATGCAC
135893994 ATGATATGCAC
1 ATGATATGCAC
*
135894005 ATGATATG--T
1 ATGATATGCAC
135894014 ATGATATGCAC
1 ATGATATGCAC
135894025 ATGA
1 ATGA
135894029 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:135894106 original size:24 final size:24
Alignment explanation
Indices: 135894079--135894197 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
135894069 GAGGAAGTGA
*
135894079 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
135894103 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
135894126 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
135894150 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
135894174 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
135894198 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:135894148 original size:47 final size:48
Alignment explanation
Indices: 135894079--135894197 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
135894069 GAGGAAGTGA
135894079 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
135894126 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
135894174 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
135894198 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:135894424 original size:31 final size:31
Alignment explanation
Indices: 135894389--135894484 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
135894379 CGTTTACAGT
135894389 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
135894420 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
135894451 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
135894482 AAA
1 AAA
135894485 ATGAAAAGGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:135902010 original size:31 final size:32
Alignment explanation
Indices: 135901949--135902015 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
135901939 AAGATAATTA
135901949 AAAGAGAAGTGATGGCTAAATATTGCGAGGGTTC
1 AAAGAGAAGTGATGG--AAATATTGCGAGGGTTC
* *
135901983 AAAGAGAAGTGATGG-GATATTGTGAGGGTTC
1 AAAGAGAAGTGATGGAAATATTGCGAGGGTTC
135902014 AA
1 AA
135902016 TTTTATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 16 0.52
34 15 0.48
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (32 bp):
AAAGAGAAGTGATGGAAATATTGCGAGGGTTC
Found at i:135904125 original size:15 final size:16
Alignment explanation
Indices: 135904097--135904127 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
135904087 TTTGCTATTT
135904097 ATTTATTAAAATAAAA
1 ATTTATTAAAATAAAA
135904113 ATTTATT-AAATAAAA
1 ATTTATTAAAATAAAA
135904128 TATGATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTATTAAAATAAAA
Found at i:135904327 original size:30 final size:30
Alignment explanation
Indices: 135904270--135904328 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
135904260 TGCCTTTTGA
** * *
135904270 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGAAACCAAATTTTT
135904300 AATATTTACAAAAAGAGAAACCAAATTTT
1 AATATTTACAAAAAGAGAAACCAAATTTT
135904329 GGAAATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGAAACCAAATTTTT
Found at i:135906540 original size:12 final size:11
Alignment explanation
Indices: 135906521--135906550 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
135906511 ATCTATTTCA
135906521 ACCATTTCAAT
1 ACCATTTCAAT
135906532 ACTCATTTCAAT
1 AC-CATTTCAAT
135906544 ACCATTT
1 ACCATTT
135906551 ACCTATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (11 bp):
ACCATTTCAAT
Found at i:135920987 original size:40 final size:40
Alignment explanation
Indices: 135920825--135921007 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
135920815 CGAATGATGT
* *
135920825 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
*
135920865 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
135920905 C-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
135920944 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
135920984 CGGGCTATGTCCCGAAGGTATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
135921008 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
39 40 0.31
40 79 0.61
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:135921029 original size:79 final size:78
Alignment explanation
Indices: 135920857--135921039 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 78
135920847 GTGCTAAGTG
** *
135920857 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGACTAAGATCCGAAGG
1 ACTAAATCCGGGTTAA-ATCCGAAGGCATTTGTGCGAGCTACTAAATCCGACTAAGATCCGAAGG
**
135920922 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* * *
135920936 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGA
1 ACTAAATCCGGGTTAAAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCC-GACTAAGAT-CCGA
*
135920999 AGGTATTTGAACGAG-T
62 AGGCATTTGAACGAGTT
*
135921015 AGCTATATCC-GGTTAAATCCGAAGG
1 A-CTAAATCCGGGTTAAATCCGAAGG
135921040 TACGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
78 8 0.09
79 50 0.57
80 30 0.34
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
ACTAAATCCGGGTTAAATCCGAAGGCATTTGTGCGAGCTACTAAATCCGACTAAGATCCGAAGGC
ATTTGAACGAGTT
Found at i:135929326 original size:40 final size:40
Alignment explanation
Indices: 135929267--135929435 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
135929257 CGGGACTTTA
* * *
135929267 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
135929307 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
135929347 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
135929387 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
135929427 CCCGGATAT
1 CCCGGATAT
135929436 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:135937246 original size:40 final size:40
Alignment explanation
Indices: 135937187--135937355 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
135937177 CGGGACTTTA
* * *
135937187 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
135937227 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
135937267 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
135937307 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
135937347 CCCGGATAT
1 CCCGGATAT
135937356 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:135943382 original size:27 final size:26
Alignment explanation
Indices: 135943330--135943382 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
135943320 AAAAAACCAC
* * *
135943330 AAAAAATAGAGAATAAAGAATAATAA
1 AAAAAATAAAGAAGAAAAAATAATAA
*
135943356 AAAAAATTAAAGAAGAAAAAATGATAA
1 AAAAAA-TAAAGAAGAAAAAATAATAA
135943383 TAATTAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (26 bp):
AAAAAATAAAGAAGAAAAAATAATAA
Found at i:135947991 original size:15 final size:17
Alignment explanation
Indices: 135947973--135948010 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
135947963 TAAAAAATAT
135947973 AATTAACA-AAATTT-A
1 AATTAACACAAATTTAA
*
135947988 AATTGACACAAATTTAA
1 AATTAACACAAATTTAA
135948005 AATTAA
1 AATTAA
135948011 AGTCCTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 7 0.37
16 6 0.32
17 6 0.32
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (17 bp):
AATTAACACAAATTTAA
Found at i:135952947 original size:7 final size:7
Alignment explanation
Indices: 135952935--135952961 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
135952925 TGTTGGAATG
135952935 ATGAAGC
1 ATGAAGC
135952942 ATGAAGC
1 ATGAAGC
135952949 ATGAAGC
1 ATGAAGC
135952956 ATGAAG
1 ATGAAG
135952962 AGAATTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.30, T:0.15
Consensus pattern (7 bp):
ATGAAGC
Found at i:135953987 original size:34 final size:34
Alignment explanation
Indices: 135953944--135954015 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
135953934 TACTATCAAT
135953944 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
1 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
135953978 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
1 ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
135954012 ACAC
1 ACAC
135954016 CCCTTACCCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.22
Consensus pattern (34 bp):
ACACTTAAGAATGAAAAGTAATGGACTAAGTGTA
Found at i:135957331 original size:68 final size:68
Alignment explanation
Indices: 135957181--135957338 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
135957171 CTAGCCAATT
* * *
135957181 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
135957246 TTTA
65 CATA
* * *
135957250 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
135957312 CTACATA
63 C-ACATA
135957319 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
135957339 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:135964810 original size:68 final size:68
Alignment explanation
Indices: 135964661--135964817 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 68
135964651 TAGCCAATTC
* * * *
135964661 ATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACAT
1 ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACAC
*
135964726 TTAT
65 ATAT
* * *
135964730 CTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTAC
1 ATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC
135964792 TACATAGT
63 -ACATA-T
135964800 ATCTCGTAGCTCTCTTGT
1 ATCTCGTAGCTCTCTTGT
135964818 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
68 36 0.49
69 6 0.08
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
ATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACACA
TAT
Found at i:135967054 original size:36 final size:36
Alignment explanation
Indices: 135967012--135967086 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
135967002 TTTTTACGCT
135967012 TTATTCAATTTGGTCCTAAATTTCCAATT-GATCACC
1 TTATTCAATTTGGTCCTAAATTTCCAATTGGA-CACC
135967048 TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
1 TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
135967084 TTA
1 TTA
135967087 CTCATAGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (36 bp):
TTATTCAATTTGGTCCTAAATTTCCAATTGGACACC
Found at i:135970172 original size:25 final size:24
Alignment explanation
Indices: 135970135--135970181 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
135970125 GGGCGATATT
* *
135970135 TTATTTTATTTAATATTGATATAA
1 TTATTTTAATTAATATTAATATAA
135970159 TTATATTTAATTAATATTAATAT
1 TTAT-TTTAATTAATATTAATAT
135970182 TACTATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTATTTTAATTAATATTAATATAA
Found at i:135970188 original size:25 final size:25
Alignment explanation
Indices: 135970139--135970188 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
135970129 GATATTTTAT
* * *
135970139 TTTATTTAATATTGATATAATTATA
1 TTTAATTAATATTAATATAACTATA
*
135970164 TTTAATTAATATTAATATTACTATA
1 TTTAATTAATATTAATATAACTATA
135970189 AAACTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTTAATTAATATTAATATAACTATA
Found at i:135970821 original size:17 final size:19
Alignment explanation
Indices: 135970794--135970831 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
135970784 TTCAACGTAA
*
135970794 TATTATATATATAATT-TT
1 TATTATATATACAATTATT
135970812 TATT-TATATACAATTATT
1 TATTATATATACAATTATT
135970830 TA
1 TA
135970832 CATAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTATATATACAATTATT
Found at i:135972102 original size:19 final size:20
Alignment explanation
Indices: 135972078--135972117 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
135972068 AATATCAACA
135972078 TATACTATATT-A-TAAAAAT
1 TATACT-TATTCATTAAAAAT
135972097 TATACTTATTCATTAAAAAT
1 TATACTTATTCATTAAAAAT
135972117 T
1 T
135972118 GTTATATCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 7 0.37
20 8 0.42
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (20 bp):
TATACTTATTCATTAAAAAT
Found at i:135979258 original size:79 final size:82
Alignment explanation
Indices: 135979118--135979302 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
135979108 TCGAATGATG
* * *
135979118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
135979182 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
135979198 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
135979260 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
135979278 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
135979303 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:135979310 original size:40 final size:40
Alignment explanation
Indices: 135979119--135979310 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
135979109 CGAATGATGT
* * * * *
135979119 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
135979159 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
135979199 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
135979238 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
135979278 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
135979311 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:135979333 original size:79 final size:79
Alignment explanation
Indices: 135979118--135979335 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
135979108 TCGAATGATG
* * * * ** *
135979118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
135979181 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
135979198 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
135979263 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
135979278 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
135979336 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:135987990 original size:39 final size:39
Alignment explanation
Indices: 135987872--135988054 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
135987862 TCGTTCAAAC
* * ** * **
135987872 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
135987912 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
135987952 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
135987991 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
135988030 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
135988055 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:135996218 original size:29 final size:29
Alignment explanation
Indices: 135996185--135996345 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
135996175 GTGACGAGAT
135996185 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
135996214 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
135996243 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
135996272 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
135996301 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
135996330 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
135996346 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:135996382 original size:2 final size:2
Alignment explanation
Indices: 135996377--135996409 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
135996367 GTGTGCGTAC
135996377 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
135996410 CTCCGATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:135998538 original size:39 final size:39
Alignment explanation
Indices: 135998494--135998645 Score: 223
Period size: 39 Copynumber: 3.9 Consensus size: 39
135998484 TATGGTAACC
** * * *
135998494 CGCACAAAGGCCTTCGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
135998533 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
135998572 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
135998611 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
135998646 TCGAACATTC
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 102 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:136002257 original size:541 final size:541
Alignment explanation
Indices: 136001017--136002978 Score: 3381
Period size: 541 Copynumber: 3.6 Consensus size: 541
136001007 AGGATGTTAC
* **
136001017 ACCCACAATTTCCACTAAATCACACTTTTATGTGAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
**
136001082 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCGGCCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
* * **
136001147 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTGA
131 CCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCTAGACCTTAATCATAACACA
*
136001212 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTTAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
* * *
136001277 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGATTAACCAAAACCCTAGCCATGGTGGTTTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
* * *
136001342 CAAACTTTCAGTCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
*
136001407 TAATTACTAAATTTTATCATACTATGGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAAT
391 TAATTACTAAATTTTATCATACTATGG-CAAAAATTACATTTTTGCCCCTAAATTTTATCATAAT
*
136001472 TACACTTTTACCTTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCG
455 TACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCG
136001537 AACCACTTTCATAACTATAAAA
520 AACCACTTTCATAACTATAAAA
* *
136001559 ACCGACAATTTCCACTACATCACACTTTTATGACAAATTTTAGAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
136001624 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
**
136001689 CCATTAAACATCAAAATA-AAGAAATTTATAACATGGTTCAAACCCTAGACCTTAATTGTAACAC
131 CCATTAAACATCAAAATACAA-AAATTTATAACATGGTTCAAACCCTAGACCTTAATCATAACAC
*
136001753 AAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAATCGTGAAAATCATTAAAAA
195 AAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAA
* *
136001818 CGGGGCAAGAACAGACTTATTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCT
260 CGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCT
136001883 TCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACAT
325 TCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACAT
*
136001948 TTAATTACTAAATTTTATCATACTATGGCAAAAATTACATATTTGCCCCTAAATTTTATCATAAT
390 TTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATAAT
*
136002013 TACA-TTGTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCTTAGCC
455 TACACTT-TTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCC
*
136002077 GAACCACTTTCATAATTATAAAA
519 GAACCACTTTCATAACTATAAAA
136002100 ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136002165 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
* * * * *
136002230 CCATTAAACATCAAAATACAAAAATTTATAACATGATTCAAACTCTAAACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCTAGACCTTAATCATAACACA
* *
136002295 AATAAATGGTAGAAATAGGAAGATCATGTTACAAGGATTTAAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
* *
136002360 GGGGCAAGAACGGACGTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTGTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
* * *
136002425 CAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACAGT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* *
136002490 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCGCTAAATTTTATCAT-TTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATAATT
* * *
136002554 ACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCG
456 ACACTTTT-ACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCG
136002619 AACCACTTTCATAACTATAAAA
520 AACCACTTTCATAACTATAAAA
* *
136002641 ACCGACAATTTCCACTACATCACACTTTTATGAAAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
136002706 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
* **
136002771 CCATTAAACATCAAAATAAAAAAATTTATAACATGGTTCAAACCCTAGACCTTAATTGTAACACA
131 CCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCTAGACCTTAATCATAACACA
*
136002836 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAATCGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
*
136002901 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAATAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136002966 CAAAATTTCGGCC
326 CAAAATTTCGGCC
136002979 AAGGTGTAAC
Statistics
Matches: 1341, Mismatches: 74, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
540 9 0.01
541 939 0.70
542 393 0.29
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (541 bp):
ACCCACAATTTCCACTACATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
CCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCTAGACCTTAATCATAACACA
AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATAATT
ACACTTTTACCCTAGGCTTGTAAAATTATTTTCATTTAATTTATTTTCACCTTAAGCCTAGCCGA
ACCACTTTCATAACTATAAAA
Found at i:136003352 original size:26 final size:26
Alignment explanation
Indices: 136003316--136003425 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
136003306 TGATACAAAT
136003316 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
136003342 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
136003368 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
136003394 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
136003420 TGATAA
1 TGATAA
136003426 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:136005104 original size:27 final size:25
Alignment explanation
Indices: 136005046--136005205 Score: 142
Period size: 27 Copynumber: 6.0 Consensus size: 25
136005036 AGGAAGCGTC
*
136005046 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC-AA-TATCTG-T
136005074 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACA-ATATCTGT
*
136005100 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTG-T
* * *
136005128 ATGGTGGCTCTGACACATATATATGTT
1 CTGGTGGCTCTGCCACA-ATATCTG-T
136005155 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG--T
* *
136005182 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
136005206 GCAGCCTCGT
Statistics
Matches: 112, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 85 0.76
28 18 0.16
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAATATCTGT
Found at i:136005138 original size:54 final size:54
Alignment explanation
Indices: 136005043--136005187 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
136005033 TGGAGGAAGC
* *
136005043 GTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAC-AATTATCTGATCTGGTGGCTCTGACACATATATAT
*
136005098 GTCCTGGTGGCTATGCCACAATTATCTGATATGGTGGCTCTGACACATATATAT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGACACATATATAT
* *
136005152 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
136005188 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 6 0.07
54 58 0.70
55 19 0.23
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGACACATATATAT
Found at i:136007373 original size:24 final size:24
Alignment explanation
Indices: 136007323--136007535 Score: 317
Period size: 24 Copynumber: 9.0 Consensus size: 24
136007313 GCTTTATCAT
*
136007323 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
136007348 ATAATTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136007372 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
136007395 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
136007419 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
136007442 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
136007466 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
136007490 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136007513 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136007536 GAACTTCCTC
Statistics
Matches: 173, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
23 66 0.38
24 96 0.55
25 11 0.06
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:136007535 original size:71 final size:71
Alignment explanation
Indices: 136007323--136007537 Score: 335
Period size: 71 Copynumber: 3.0 Consensus size: 71
136007313 GCTTTATCAT
* * * *
136007323 ATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAA
*
136007387 GCCC-TTTA
63 GCCCTTTTG
136007395 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
136007460 CTTTTG
66 CTTTTG
*
136007466 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
136007531 CTTTTG
66 CTTTTG
136007537 A
1 A
136007538 ACTTCCTCCA
Statistics
Matches: 135, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
70 23 0.17
71 100 0.74
72 12 0.09
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
CTTTTG
Found at i:136007537 original size:47 final size:48
Alignment explanation
Indices: 136007323--136007535 Score: 317
Period size: 47 Copynumber: 4.5 Consensus size: 48
136007313 GCTTTATCAT
* * *
136007323 ATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
136007372 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
136007419 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
136007466 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
136007513 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136007536 GAACTTCCTC
Statistics
Matches: 155, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 117 0.75
48 26 0.17
49 12 0.08
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:136007607 original size:9 final size:9
Alignment explanation
Indices: 136007593--136007649 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
136007583 ATCTCATGTG
136007593 CATATCATA
1 CATATCATA
*
136007602 CATATCATGTG
1 CATATCA--TA
136007613 CATATCATA
1 CATATCATA
* *
136007622 CATGTCATGTG
1 CATATCA--TA
136007633 CATATCATA
1 CATATCATA
136007642 CATATCAT
1 CATATCAT
136007650 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:136007609 original size:20 final size:20
Alignment explanation
Indices: 136007581--136007651 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
136007571 GCATTTATGA
*
136007581 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136007601 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136007621 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136007641 ACATATCATGT
1 ACATATCATGT
136007652 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:136007616 original size:11 final size:11
Alignment explanation
Indices: 136007586--136007640 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
136007576 TATGAACATC
136007586 TCATGTGCATA
1 TCATGTGCATA
*
136007597 TCA--TACATA
1 TCATGTGCATA
136007606 TCATGTGCATA
1 TCATGTGCATA
* *
136007617 TCA--TACATG
1 TCATGTGCATA
136007626 TCATGTGCATA
1 TCATGTGCATA
136007637 TCAT
1 TCAT
136007641 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:136012679 original size:26 final size:28
Alignment explanation
Indices: 136012614--136012680 Score: 104
Period size: 26 Copynumber: 2.5 Consensus size: 28
136012604 GCGTAGATCA
136012614 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
136012642 CGAAATTA-CCCTAAAGAGC-AAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
136012668 CGATA-TACCCCTA
1 CGAAATTACCCCTA
136012681 GGGTTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 2 0.05
26 16 0.43
27 11 0.30
28 8 0.22
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:136018050 original size:26 final size:26
Alignment explanation
Indices: 136017988--136018096 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
136017978 TGATACAAAT
136017988 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
136018013 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
136018039 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
136018065 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
136018091 TGATAA
1 TGATAA
136018097 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:136019556 original size:26 final size:26
Alignment explanation
Indices: 136019493--136019568 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
136019483 AAAAGTAGCT
* * * *
136019493 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGCA
136019521 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
136019547 AAATTACTGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
136019569 GTTACTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:136019730 original size:27 final size:25
Alignment explanation
Indices: 136019672--136019803 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 25
136019662 AGGAAGCGTC
*
136019672 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC-AA-TATCTG-T
136019700 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACA-ATATCTGT
* *
136019726 CCTGGTGGCTATGCCATAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTG-T
*
136019754 ATGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTG-T
136019781 CTGGTGGCTCTGCCACAATATCT
1 CTGGTGGCTCTGCCACAATATCT
136019804 ATATCTGGTG
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.09
27 65 0.71
28 18 0.20
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAATATCTGT
Found at i:136019761 original size:54 final size:54
Alignment explanation
Indices: 136019669--136019807 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 54
136019659 TGGAGGAAGC
*
136019669 GTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCA-AAATTATCTGATATGGTGGCTCTGCCACATATATCT
*
136019724 GTCCTGGTGGCTATGCCATAATTATCTGATATGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAAAATTATCTGATATGGTGGCTCTGCCACATATATCT
* * *
136019778 GTTCTGGTGGCTCTGCCACAA-TATCT-ATAT
1 GTCCTGGTGGCTATGCCAAAATTATCTGATAT
136019808 CTGGTGATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
52 4 0.05
53 5 0.06
54 52 0.66
55 18 0.23
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCAAAATTATCTGATATGGTGGCTCTGCCACATATATCT
Found at i:136021765 original size:541 final size:541
Alignment explanation
Indices: 136020743--136022953 Score: 3895
Period size: 541 Copynumber: 4.1 Consensus size: 541
136020733 GTGCTACACA
136020743 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
1 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
*
136020808 TATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA
66 TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA
* *
136020873 GGCTTGTAAAATAATTTTCATTCAATTTATTTTTAATTTAAGCCTAGCCGAACCACTTTCATAAC
131 GGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAAC
136020938 TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTA
196 TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTA
*
136021003 GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCA
261 GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCA
136021068 TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACC-TCTATC
326 TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTTC-ATC
136021132 ATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCA
390 ATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCA
136021197 TTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATG
455 TTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATG
136021262 GTGGTCTTCAAAATTTCGGCCG
520 GTGGTCTTCAAAATTTCGGCCG
**
136021284 AGGGGTTGAAGATGACCAAAATTTTTCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
1 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
* *
136021349 TATCATACTCTGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTATACTTTTACCCTA
66 TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA
* *
136021414 GGCTTGTAAAACAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAGC
131 GGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAAC
* * *
136021479 TATAAAAACCCACAATTTTCACTAAATCACACTTTTATGAAAAATTTTATAAATTTTACAAATTA
196 TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTA
* * *
136021544 GACCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCCCCAACCATAAACATGTA
261 GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCA
* * * *
136021609 TAATCTACCATTAAACATCAAAATACTCAAATTTATAACATGGTTCAAACCATAAACCTTCATCA
326 TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTTCATCA
*
136021674 TAACTGAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
391 TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
*
136021739 TAAAAATGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
456 TAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
*
136021804 TGGTCTTCAAAATTTCGGCCA
521 TGGTCTTCAAAATTTCGGCCG
* * * *
136021825 AGGGGTTCAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACAGTTAACTACTAAATTT
1 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
*
136021890 TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCCT
66 TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCT
* * **
136021954 AGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAAAACCACTTTCATAA
130 AGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAA
136022019 CTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATT
195 CTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATT
* * *
136022084 AGTCCTTTTTAGCAGTTTCATTGAAAATCGCTTAGCAAAAGTTGTTTCTCCAACCATAAACATGA
260 AGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGC
*
136022149 ATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATC
325 ATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTTCATC
* * *
136022214 ATAACTCAAATAAATGGTAGAAATAGGTAGCTCATGTTACAAGGATTTCAAGAATGTGAAAATCA
390 ATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCA
* *
136022279 TTAAAAACGGGGCAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCATG
455 TTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATG
*
136022344 GTGGTCCTCAAAATTTCGGCCG
520 GTGGTCTTCAAAATTTCGGCCG
*
136022366 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAACTT
1 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
* * * * *
136022431 TATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTTACACTTTTACCATA
66 TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA
*
136022496 GGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCGAGCCGAACCACTTTCATAAC
131 GGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAAC
*
136022561 TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAACTA
196 TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTA
* *
136022626 GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTTTCTAACCATAAACATGCA
261 GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCA
*
136022691 TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTCCATCA
326 TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTTCATCA
136022756 TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
391 TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
*
136022821 TAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
456 TAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
*
136022886 TGGTCTTTAAAATTTCGGCCG
521 TGGTCTTCAAAATTTCGGCCG
136022907 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAA
1 AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAA
136022954 TAAACAAGGA
Statistics
Matches: 1579, Mismatches: 88, Indels: 6
0.94 0.05 0.00
Matches are distributed among these distances:
540 10 0.01
541 1556 0.99
542 13 0.01
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (541 bp):
AGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTT
TATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTA
GGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAAC
TATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTA
GTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCA
TAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCTTCATCA
TAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
TAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
TGGTCTTCAAAATTTCGGCCG
Found at i:136023000 original size:10 final size:10
Alignment explanation
Indices: 136022981--136023010 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
136022971 TAACTCAAAT
136022981 AAAT-GGTAG
1 AAATAGGTAG
136022990 AAATAGGTAG
1 AAATAGGTAG
136023000 AAATAGGTAG
1 AAATAGGTAG
136023010 A
1 A
136023011 TCATGTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (10 bp):
AAATAGGTAG
Found at i:136023136 original size:225 final size:224
Alignment explanation
Indices: 136022766--136023176 Score: 813
Period size: 225 Copynumber: 1.8 Consensus size: 224
136022756 TAACTCAAAT
136022766 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
136022831 GCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTAA
66 GCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTAA
136022896 AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAATAAACAA
131 AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAATAAACAA
136022961 GGATTTCAAATAACTCAAATAAATGGTAG
196 GGATTTCAAATAACTCAAATAAATGGTAG
136022990 AAATAGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
1 AAAT-GGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
136023055 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTA
65 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTA
136023120 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTA
130 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTA
136023177 GACATTTAAT
Statistics
Matches: 186, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
224 4 0.02
225 182 0.98
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (224 bp):
AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
GCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTAA
AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAATAAACAA
GGATTTCAAATAACTCAAATAAATGGTAG
Found at i:136023704 original size:766 final size:765
Alignment explanation
Indices: 136022225--136023719 Score: 2639
Period size: 766 Copynumber: 2.0 Consensus size: 765
136022215 TAACTCAAAT
* * *
136022225 AAATGGTAGAAATAGGTAGCTCATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
* *
136022290 GCAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCATGGTGGTCCTCAA
66 GCAAGAACAGACTTACTATGGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCCTCAA
136022355 AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
131 AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
* *
136022420 TTACTAAACTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTTACA
196 TTACTAAACTTTATCATACTATGGAAAAAATTAAATTTATGCCCCTAAATTTTATCATATTTACA
*
136022485 CTTTTACCATAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCGAGCCGAACC
261 CTTTTACCATAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCGAGCCGAACC
*
136022550 ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACT
326 ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAACT
* * * *
136022615 TTTACAAACTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTTTCTAACC
391 TTTACAAACTAGTCATTTTTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACC
*
136022680 ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTA
456 ATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATAGTTCAAACCCTA
*
136022745 GACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAAC
521 AACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAAC
136022810 GTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAAC
586 GTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAAC
* * * *
136022875 CCTAGCCATGGTGGTCTTTAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTAT
651 CCTAGCCATGGTGGTCTTCAAAATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTAT
136022940 TTTGTTTATTTAAATAAACAAGGATTTCAAATAACTCAAATAAATGGTAG
716 TTTGTTTATTTAAATAAACAAGGATTTCAAATAACTCAAATAAATGGTAG
136022990 AAATAGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
1 AAAT-GGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
* * *
136023055 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTA
65 GGCAAGAACAGACTTACTATGGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCCTCA
*
136023120 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAGACATTTA
130 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
* * * * *
136023185 ATTACTAAATTTTTTCATACTATGGAAAAAATTACATTTTTGCCCTTAAATTTTATCATATTTAC
195 ATTACTAAACTTTATCATACTATGGAAAAAATTAAATTTATGCCCCTAAATTTTATCATATTTAC
* *
136023250 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAAC
260 ACTTTTACCATAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCGAGCCGAAC
* *
136023315 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATTAAAAATTTTATAAG
325 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAAC
*
136023380 TTTTACAAATTAGTCATTTTTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
390 TTTTACAAACTAGTCATTTTTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
*
136023445 CATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCT
455 CATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATAGTTCAAACCCT
* *
136023510 AAACCTTCATCATAACTCAAATAAGTGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAA
520 AAACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAA
*
136023575 CGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAA
585 CGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAA
*
136023640 CCCTAGCCATGGTTGTCTTCAAAATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTA
650 CCCTAGCCATGGTGGTCTTCAAAATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTA
136023705 TTTTGTTTATTTAAA
715 TTTTGTTTATTTAAA
136023720 CATTTAATTA
Statistics
Matches: 691, Mismatches: 38, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
765 4 0.01
766 687 0.99
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (765 bp):
AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
GCAAGAACAGACTTACTATGGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCCTCAA
AATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
TTACTAAACTTTATCATACTATGGAAAAAATTAAATTTATGCCCCTAAATTTTATCATATTTACA
CTTTTACCATAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCGAGCCGAACC
ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAACT
TTTACAAACTAGTCATTTTTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACC
ATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATAGTTCAAACCCTA
AACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAAC
GTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAAC
CCTAGCCATGGTGGTCTTCAAAATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTAT
TTTGTTTATTTAAATAAACAAGGATTTCAAATAACTCAAATAAATGGTAG
Found at i:136024730 original size:540 final size:541
Alignment explanation
Indices: 136022990--136025499 Score: 4391
Period size: 540 Copynumber: 4.6 Consensus size: 541
136022980 TAAATGGTAG
136022990 AAATAGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
1 AAAT-GGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGG
* *
136023055 GGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTTA
65 GGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCA
* *
136023120 AAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAGACATTTA
130 AAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTA
* *
136023185 ATTACTAAATTTTTTCATACTATGGAAAAAATTACATTTTTGCCCTTAAATTTTATCATATTTAC
195 ATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTAC
136023250 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAAC
260 ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAAC
* *
136023315 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATTAAAAATTTTATAAG
325 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAAC
* *
136023380 TTTTACAAATTAGTCATTTTTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
390 TTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
*
136023445 CATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATGGTTCAAACCCT
455 CATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCT
136023510 AAACCTTCATCATAACTCAAAT
520 AAACCTTCATCATAACTCAAAT
*
136023532 AAGTGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
*
136023597 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTTGTCTTCAA
66 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
* *
136023662 AATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTATTTTGTTTATTTAAACATTTAA
131 AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
136023727 TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
196 TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
136023792 CTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
261 CTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
* *
136023857 ATTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAAAC-TTTATGAAAAATTTTATAACT
326 ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAACT
*
136023921 TTTAAAAATTAGTCCTTTTTAGCATTTTCATTG-AAATCACTTAGCAAAAGTTGTTTCTCCAACC
391 TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACC
136023985 ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA
456 ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA
*
136024050 AACCTTCATCACAACTCAAAT
521 AACCTTCATCATAACTCAAAT
*
136024071 AAATGGTAGAAATAGGTAGATCATGTTATAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
136024136 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
66 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
*
136024201 AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTAA
131 AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
* *
136024266 CTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCT-AATTTTATCAT-TTTACA
196 TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
* * ** *
136024329 CTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGAAC
261 CTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAAC
*
136024394 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAAC
325 CACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAAC
* *
136024459 TTTTACATATTAGTCCTTTTTAGCATTTTTATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
390 TTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAAC
**
136024524 CATAAACATGCATAATCTAGAATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCT
455 CATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCT
* *
136024589 AGACCTTCATCATAAGTCAAAT
520 AAACCTTCATCATAACTCAAAT
* * * * *
136024611 AAATGGTAGAAATATGTAGATCACGTTACAAGGATTTCAAGAATGTGAAAATCCTTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
* *
136024676 GCAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCATGGTGGTCTTCAA
66 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
* *
136024741 AATTTCGACCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
131 AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
* * * *
136024806 TTACTAAATTTTATCATACTACGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCGTATTTACA
196 TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
* * *
136024871 CTTTTACCATAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCACTTTAAGCCGAGCCGAACC
261 CTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
*
136024935 ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACT
326 ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAACT
*
136025000 TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACC
391 TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACC
*
136025065 ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTA
456 ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA
* * *
136025130 GACCTCCATCATAACTGAAAT
521 AACCTTCATCATAACTCAAAT
136025151 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
1 AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
*
136025216 GCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
66 GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
* *
136025281 AATTTCTGCCAAGGGGTTAAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
131 AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
* * *
136025346 TTTCTAAATTTTTTCATACTATGGAAAAAATTACATTTTTGCCCTTAAATTTTATCATATTTACA
196 TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
*
136025411 CTTTTACCCTAGGGTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
261 CTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
136025476 ACTTTCATAACTATAAAAACCCAC
326 ACTTTCATAACTATAAAAACCCAC
136025500 TGTAACACCC
Statistics
Matches: 1867, Mismatches: 95, Indels: 13
0.95 0.05 0.01
Matches are distributed among these distances:
537 11 0.01
538 107 0.06
539 399 0.21
540 895 0.48
541 441 0.24
542 14 0.01
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (541 bp):
AAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGG
GCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAA
AATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAA
TTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACA
CTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACC
ACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTATAACT
TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACC
ATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA
AACCTTCATCATAACTCAAAT
Found at i:136026238 original size:31 final size:31
Alignment explanation
Indices: 136026203--136026266 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
136026193 CCTTTTCATG
136026203 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
136026234 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
136026265 TT
1 TT
136026267 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:136026521 original size:23 final size:24
Alignment explanation
Indices: 136026458--136026597 Score: 209
Period size: 23 Copynumber: 6.0 Consensus size: 24
136026448 GCTTTATCAT
* *
136026458 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
136026483 ATAACTGGGGCA-AAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
136026505 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
136026528 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
136026552 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
136026575 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136026598 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 1, Indels: 9
0.92 0.01 0.08
Matches are distributed among these distances:
22 12 0.11
23 61 0.55
24 29 0.26
25 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:136026556 original size:47 final size:47
Alignment explanation
Indices: 136026457--136026597 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
136026447 TGCTTTATCA
*
136026457 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT
136026504 TATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
136026550 TGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
136026597 T
1 T
136026598 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
45 12 0.13
46 35 0.39
47 42 0.47
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:136026673 original size:20 final size:19
Alignment explanation
Indices: 136026648--136026706 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 19
136026638 TATGATTACC
136026648 TCATGTGCATATCATACATA
1 TCATGTGCATA-CATACATA
*
136026668 TCATGTGCATAGCATACATT
1 TCATGTGCATA-CATACATA
136026688 TCATGTGCATACATACATA
1 TCATGTGCATACATACATA
136026707 CCATATTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 7 0.19
20 29 0.81
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (19 bp):
TCATGTGCATACATACATA
Found at i:136026781 original size:25 final size:25
Alignment explanation
Indices: 136026749--136026796 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
136026739 ATACATAAAC
* * *
136026749 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
136026774 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
136026797 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:136033349 original size:536 final size:541
Alignment explanation
Indices: 136029474--136036821 Score: 13418
Period size: 536 Copynumber: 13.7 Consensus size: 541
136029464 GGGGCGTTAC
* * *
136029474 ACCCACAATTTCCACTAAATCACACTTTTATTA-AAATTTTATAAGTTTTACAAATTAGTCATTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
136029538 TTAGCATTGTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136029603 CCATTAAACATCAAAATACA-AAATTTATAACATGGTTCAAACCCTA-ACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136029666 AATAAGTGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136029731 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT-GTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
* * *
136029795 CAAAATTACGGCCAAGGGGTTGAAGATGACCAAAATTTAGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
*
136029860 TAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTG-CCCTAAATTTTATCATATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
* *
136029924 ACACTTTTACCCTAGGCTTGTAAAATAATTTCCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136029989 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136030010 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTAC-AATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
136030074 TTAGCATTTTTATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
*
136030139 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAGTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136030204 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136030268 -GGGCAAGAAC-GACTTACTAT-GAGCTTGGAAAGCTTAAA-AAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136030329 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* *
136030394 TAATTACTAAA-TTTATCATACTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
** *
136030458 ACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136030523 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136030544 ACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136030608 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136030673 CCATTAAACATCAAAATACACAAATTTATAACAT-GTTCAAACCCTAGACC-TCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136030736 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136030801 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136030866 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTT-TTTATTTAAACA-T
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136030928 TAA-TACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
* * *
136030991 ACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCG
456 ACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCG
136031056 AACCACTTTCATAACTATAAAA
520 AACCACTTTCATAACTATAAAA
136031078 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136031143 TTAGCA-TTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136031207 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136031272 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136031337 -GGGCAAGAACGGACTTACTATGGA-CTTGGAAAGCTTAAA-AAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136031399 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* *
136031464 TAATTACTAAATTTTATCATACTATGG-AAAAATTA-AATTTTGCCCCTAAATTTTATCTTATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
136031527 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136031592 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136031613 ACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136031677 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136031742 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA-ACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136031806 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136031871 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
*
136031936 CAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136032000 TAATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
*
136032064 ACACTTTTACCCTAAGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136032129 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136032150 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136032215 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136032280 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136032345 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136032409 GGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136032473 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* *
136032538 TAATTACTAAATTTTATCATACTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
** *
136032603 ACACTTTTAAGCTAGG-ATGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136032667 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136032688 ACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136032752 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136032817 CCATTAAACATCAAAATACACAAATTTATAACAT-GTTCAAACCCTAGACC-TCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136032880 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136032945 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136033010 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTT-TTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136033073 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
* * *
136033137 ACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAG-CG
456 ACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCG
136033201 AACCACTTTCATAACTATAAAA
520 AACCACTTTCATAACTATAAAA
136033223 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136033288 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136033353 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136033418 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136033482 GGGGCAAGAAC-GACTTACTATGGA-CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136033545 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* *
136033610 TAATTACTAAATTTTATCATACTATGG-AAAAATTA-AATTTTGCCCCTAAATTTTATCTTATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
*
136033673 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136033738 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
*
136033759 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACATATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136033824 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136033889 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136033954 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136034018 GGGGCAAGAAC-GACTTACTAT-GAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136034081 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136034146 TAATTACTAAATTTT-T-ATACTATGG-AAAAATTACATTTTTG-CCCTAAATTTTATCATATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
136034207 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136034272 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136034293 ACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136034357 TTAGCA-TTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136034421 CCATTAAACATCAAAATACA-AAATTTATAACATGGTTCAAACCCTA-ACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136034484 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136034549 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT-GTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
*
136034613 CAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
*
136034677 TAATTACTAAATTTTATCATAATATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
*
136034741 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136034806 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
* * *
136034827 ACCCACAATTTCCACTAAATCAAAC-TTTATGAAAAATTTTATAACTTTTAAAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136034891 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
136034956 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA-ACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136035020 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136035085 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
*
136035150 CAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136035214 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
* * *
136035278 ACACTTTTGCCCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136035342 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136035363 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTAC-AATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136035427 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
*
136035492 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAGTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
*
136035557 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAAAATCATTAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
*
136035621 GGGGCAAGAACGAACTTACTAT-GAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
136035685 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
* * *
136035750 TAATTACTAAATTTTATCATACTACGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
** *
136035815 ACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136035880 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136035901 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
*
136035966 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAA-ATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
*
136036030 CCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTA-ACC-TCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
136036093 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAA-
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
136036157 GGGGCAAGAACGGACTTACTAT-GAGCTTGGAAAGCTTAAACAAAA-CCTAGCCATGGTGGTCTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
* *
136036220 CAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT-GCTTTTATTTTGTTTATGTAAACATT
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
*
136036284 TAATTACTAAATTTTATCATAC-ATGGCAAAAATTACATTTTTGCCCATAAATTTTATCAT-TTT
391 TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
* *
136036347 ACACTTTTGCCCTAGGCTT-TAAAATAATTTTCATTCAATTTA-TTTCACCTTAAGCCTAGCCGA
456 ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
136036410 ACCACTTTCATAACTATAAAA
521 ACCACTTTCATAACTATAAAA
136036431 ACCCACAATTTCCACTAAATCACAC-TTTATGAC-AA-TTTATAACTTTTACAAATTAGTCCTTT
1 ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
136036493 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
66 TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
*
136036558 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAGCCCTAGACCTTCATCATAACTCA
131 CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
* *
136036623 AATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATCAAAAAC
196 AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
* * * * *
136036688 GGGGCAAGAATGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCGTGGTGGACTT
261 GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
*
136036753 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATG
326 CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
136036818 TAAT
391 TAAT
136036822 GTGACAGCCC
Statistics
Matches: 6623, Mismatches: 121, Indels: 138
0.96 0.02 0.02
Matches are distributed among these distances:
527 78 0.01
528 59 0.01
529 11 0.00
530 199 0.03
531 144 0.02
532 224 0.03
533 373 0.06
534 1147 0.17
535 940 0.14
536 1639 0.25
537 993 0.15
538 647 0.10
539 169 0.03
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.33
Consensus pattern (541 bp):
ACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTT
TTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTA
CCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCA
AATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAAC
GGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTT
CAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATT
TAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTT
ACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
ACCACTTTCATAACTATAAAA
Found at i:136038654 original size:40 final size:40
Alignment explanation
Indices: 136038548--136038730 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
136038538 TGCTGGAAAT
* * * * * **
136038548 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
136038588 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
136038628 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
136038666 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGT-CGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
136038706 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
136038731 GTTTGAATGA
Statistics
Matches: 114, Mismatches: 26, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
38 2 0.02
39 49 0.43
40 63 0.55
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:136042235 original size:34 final size:35
Alignment explanation
Indices: 136042176--136042247 Score: 112
Period size: 34 Copynumber: 2.1 Consensus size: 35
136042166 ATTAAAGGAG
*
136042176 TTGAAAGCTCAGTTGCAAGATTGGTGGATA-AGGTT
1 TTGAAAGCTCAGTTGCAAGAATGGT-GATAGAGGTT
136042211 TTGAAAGCTCAG-TGCAAGAATGGTGATAGAGGTT
1 TTGAAAGCTCAGTTGCAAGAATGGTGATAGAGGTT
136042245 TTG
1 TTG
136042248 TCGCCCGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
33 4 0.11
34 19 0.54
35 12 0.34
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.31
Consensus pattern (35 bp):
TTGAAAGCTCAGTTGCAAGAATGGTGATAGAGGTT
Found at i:136049703 original size:92 final size:93
Alignment explanation
Indices: 136049591--136049761 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
136049581 CGCCCATAAG
* *
136049591 CGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTC-GACTCAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
136049655 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
136049683 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
136049748 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
136049762 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 48 0.66
93 25 0.34
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGAATCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:136049735 original size:46 final size:46
Alignment explanation
Indices: 136049584--136049758 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
136049574 TGTAACCCGC
* * * *
136049584 CCATAAGCGAACTCGGAATCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
136049630 CCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
136049679 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
136049722 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
136049759 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 21 0.19
46 48 0.44
47 24 0.22
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:136053822 original size:27 final size:27
Alignment explanation
Indices: 136053761--136053870 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
136053751 AGCATGGCTG
* *
136053761 CCAGAACAGATAA-TGTGACAGA-TCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
136053786 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
136053814 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
136053841 CCAGATCAGATAATTGT-GCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
136053867 CCAG
1 CCAG
136053871 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.07
26 23 0.31
27 36 0.49
28 10 0.14
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:136053866 original size:53 final size:53
Alignment explanation
Indices: 136053761--136053870 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 53
136053751 AGCATGGCTG
* *
136053761 CCAGAACAGATAATGTGACAGATCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGACCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
136053814 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGT-GCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGA-CCACCAGATACAGATAATCGTGGCAGAGCCA
136053867 CCAG
1 CCAG
136053871 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 23 0.46
54 19 0.38
55 8 0.16
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (53 bp):
CCAGAACAGAAAATGTGACAGACCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:136061649 original size:27 final size:27
Alignment explanation
Indices: 136061618--136061722 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
136061608 TTGCCAGAAT
* *
136061618 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
136061645 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
136061672 AGAAATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
136061699 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
136061723 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.74
28 17 0.25
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:136061875 original size:28 final size:28
Alignment explanation
Indices: 136061828--136061892 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
136061818 AAATTAACCC
*
136061828 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
136061856 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
*
136061884 TAAGGGTAT
1 TAGGGGTAT
136061893 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:136067089 original size:18 final size:18
Alignment explanation
Indices: 136067052--136067090 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
136067042 TTGGAAATCA
*
136067052 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
136067070 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
136067088 AAA
1 AAA
136067091 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:136069759 original size:22 final size:22
Alignment explanation
Indices: 136069715--136069768 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
136069705 CGGCCTGCAG
**
136069715 CACGGGCGTG-CCCTAGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
*
136069736 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
*
136069758 CACAGGCGTGT
1 CACGGGCGTGT
136069769 GAGCCCTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.15, C:0.33, G:0.35, T:0.17
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:136073805 original size:18 final size:18
Alignment explanation
Indices: 136073754--136073806 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
136073744 GGCTAAGGGC
136073754 TAAATTAGAAATCAAAATTAT
1 TAAA-TAGAAAT--AAATTAT
*
136073775 TAAA-AGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
136073793 TAAATAGAAATAAA
1 TAAATAGAAATAAA
136073807 AATCATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 16 0.57
19 6 0.21
20 2 0.07
21 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:136081972 original size:28 final size:27
Alignment explanation
Indices: 136081922--136082000 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 27
136081912 TAAGCCTATC
*
136081922 GGGACAATAAACACAAGGTAAGTTCGCT
1 GGGACAATAAACACAAGGTAAGTCCG-T
*
136081950 GGGACAGTAAACACAAGGTAAGTCCGT
1 GGGACAATAAACACAAGGTAAGTCCGT
*
136081977 GAGAACAATAAACACAA-GTAAGTC
1 G-GGACAATAAACACAAGGTAAGTC
136082001 TGCTAGGACA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 9 0.20
28 37 0.80
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.15
Consensus pattern (27 bp):
GGGACAATAAACACAAGGTAAGTCCGT
Found at i:136082011 original size:27 final size:28
Alignment explanation
Indices: 136081923--136082011 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
136081913 AAGCCTATCG
*
136081923 GGACAATAAACACAAGGTAAGT-TCGCTG
1 GGACAATAAACACAAGGTAAGTCT-GCTA
* *
136081951 GGACAGTAAACACAAGGTAAGTCCG-TGA
1 GGACAATAAACACAAGGTAAGTCTGCT-A
*
136081979 GAACAATAAACACAA-GTAAGTCTGCTA
1 GGACAATAAACACAAGGTAAGTCTGCTA
136082006 GGACAA
1 GGACAA
136082012 GAGAAAATAG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
27 15 0.29
28 36 0.71
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.16
Consensus pattern (28 bp):
GGACAATAAACACAAGGTAAGTCTGCTA
Done.