Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 443 of 770
Found at i:136324549 original size:18 final size:18
Alignment explanation
Indices: 136324500--136324555 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
136324490 CACTCTCAAA
* *
136324500 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
136324517 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
136324535 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
136324554 TT
1 TT
136324556 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:136324556 original size:12 final size:12
Alignment explanation
Indices: 136324525--136324549 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
136324515 TTTTTCAATC
136324525 TCATTTTCTTTT
1 TCATTTTCTTTT
136324537 TCATTTTCTTTT
1 TCATTTTCTTTT
136324549 T
1 T
136324550 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:136324567 original size:12 final size:12
Alignment explanation
Indices: 136324552--136324582 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
136324542 TTCTTTTTGC
136324552 TTTTCAAAGACT
1 TTTTCAAAGACT
*
136324564 TTTTCAAAGGCT
1 TTTTCAAAGACT
136324576 TTTTCAA
1 TTTTCAA
136324583 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:136324640 original size:5 final size:5
Alignment explanation
Indices: 136324630--136324696 Score: 59
Period size: 5 Copynumber: 13.0 Consensus size: 5
136324620 CTCTTGCCTC
*
136324630 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
136324677 TCTTT TCTTT T-TTT CTCTTT
1 TCTTT TCTTT TCTTT -TCTTT
136324697 ACAAGAATGT
Statistics
Matches: 52, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
4 7 0.13
5 31 0.60
6 9 0.17
7 5 0.10
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:136324672 original size:31 final size:29
Alignment explanation
Indices: 136324630--136324692 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 29
136324620 CTCTTGCCTC
136324630 TCTTTTCTTTTT-ATTTCGTTTTCTTTTTCT
1 TCTTTTCTTTTTCATTTC-TTTTCTTTTT-T
*
136324660 TCTTTTGCTTTTTCTTTTCTTTTCTTTTTT
1 TCTTTT-CTTTTTCATTTCTTTTCTTTTTT
136324690 TCT
1 TCT
136324693 CTTTACAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 10 0.33
31 16 0.53
32 4 0.13
ACGTcount: A:0.02, C:0.17, G:0.03, T:0.78
Consensus pattern (29 bp):
TCTTTTCTTTTTCATTTCTTTTCTTTTTT
Found at i:136324695 original size:15 final size:16
Alignment explanation
Indices: 136324628--136324696 Score: 81
Period size: 15 Copynumber: 4.4 Consensus size: 16
136324618 GCCTCTTGCC
*
136324628 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
136324644 T-TCGTTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
136324660 TCT-TTTGCTTTTTCT
1 TCTCTTTTCTTTTTCT
*
136324675 TTTCTTTTCTTTTT-T
1 TCTCTTTTCTTTTTCT
136324690 TCTCTTT
1 TCTCTTT
136324697 ACAAGAATGT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
15 22 0.49
16 22 0.49
17 1 0.02
ACGTcount: A:0.01, C:0.19, G:0.03, T:0.77
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:136327235 original size:30 final size:30
Alignment explanation
Indices: 136327149--136327246 Score: 88
Period size: 30 Copynumber: 3.3 Consensus size: 30
136327139 TTAAACTAAA
* * *
136327149 ATGAGCTAAGCTTTAGCTCTTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCCTGAGCTGAAG
* * * * *
136327179 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCCTGAGCTGAAG
* * * *
136327209 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCCTGAGCTGAAG
136327239 ATGAGCTA
1 ATGAGCTA
136327247 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCCTGAGCTGAAG
Found at i:136328995 original size:30 final size:30
Alignment explanation
Indices: 136328961--136329044 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
136328951 TAAACTAAAA
* *
136328961 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
* * * * * *
136328991 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
*
136329021 TGAGC-AAGGTTTAGCTCGTGAGCT
1 TGAGCTAAGATTTAGCTCGTGAGCT
136329045 GAATATGAGC
Statistics
Matches: 40, Mismatches: 14, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
29 13 0.32
30 27 0.68
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
Found at i:136331789 original size:11 final size:12
Alignment explanation
Indices: 136331773--136331802 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
136331763 TAAATCACTT
136331773 TTTTTTTC-GAA
1 TTTTTTTCGGAA
136331784 TTTTTTTCGGAA
1 TTTTTTTCGGAA
136331796 TTTTTTT
1 TTTTTTT
136331803 TTCAAACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (12 bp):
TTTTTTTCGGAA
Found at i:136331789 original size:12 final size:13
Alignment explanation
Indices: 136331772--136331803 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
136331762 ATAAATCACT
136331772 TTTTTTTTC-GAA
1 TTTTTTTTCGGAA
136331784 -TTTTTTTCGGAA
1 TTTTTTTTCGGAA
136331796 TTTTTTTT
1 TTTTTTTT
136331804 TCAAACTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 3 0.17
13 7 0.39
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.72
Consensus pattern (13 bp):
TTTTTTTTCGGAA
Found at i:136341418 original size:39 final size:39
Alignment explanation
Indices: 136341293--136341420 Score: 141
Period size: 39 Copynumber: 3.3 Consensus size: 39
136341283 ATGCTGGAAA
* * *
136341293 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCC-GGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * **
136341333 CTACATCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
136341372 TTCTATCCGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
136341411 TTATATCCGG
1 TTATATCCGG
136341421 TTATATTCCG
Statistics
Matches: 70, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 64 0.91
40 5 0.07
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:136350733 original size:43 final size:43
Alignment explanation
Indices: 136350553--136350867 Score: 221
Period size: 43 Copynumber: 7.3 Consensus size: 43
136350543 GTTTGAACGG
* * *
136350553 AAAACGCCGCTAAAAGTAGATACCTTTAGCGGCGCTTT-ACCAT
1 AAAA-GCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTCACCAC
* * * * * *
136350596 AAACGTCGCTAATAGTATAGACCTTTAGCGGCGCTTAGCA-AAC
1 AAAAGCCGCTAAAAGTACAGACCTTTAGCGGCGCTT-TCACCAC
* * * ** **
136350639 AAACGCCACTAAAGGTGTAGACCTTTAGCGGCG-TTTCTAGGA-
1 AAAAGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTC-ACCAC
* *
136350681 AAAGCGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTTGC-CCA-
1 AAA-AGCCGCTAAAAGTACAGACCTTTAGCGGCGC-TTT-CACCAC
** * * *
136350725 AAAAGCCGCTAAATTTATAGACCTATAGCGGCGCTTACACCA-
1 AAAAGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTCACCAC
* * *
136350767 AAAACGCCGCCAAAAGTACAGACCTTTTAGCGGTGCTTTCTCCAC
1 AAAA-GCCGCTAAAAGTACAGACC-TTTAGCGGCGCTTTCACCAC
* * * * *
136350812 AAATGCCGCCAAAAGTAGAGTCCTTTAGCGGCGCTTTCCCCAC
1 AAAAGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTCACCAC
*
136350855 AAACGCCGCTAAA
1 AAAAGCCGCTAAA
136350868 TTTACAGATT
Statistics
Matches: 216, Mismatches: 44, Indels: 24
0.76 0.15 0.08
Matches are distributed among these distances:
41 2 0.01
42 43 0.20
43 127 0.59
44 37 0.17
45 6 0.03
46 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
AAAAGCCGCTAAAAGTACAGACCTTTAGCGGCGCTTTCACCAC
Found at i:136350865 original size:130 final size:127
Alignment explanation
Indices: 136350553--136350871 Score: 319
Period size: 130 Copynumber: 2.5 Consensus size: 127
136350543 GTTTGAACGG
* * *
136350553 AAAA-CGCCGCTAAAAGTAGA-TACCTTTAGCGGCGCTTTACCATAAACGTCGCT-AATAGTATA
1 AAAAGCGCCGCTAAAAGTAGAGT-CCTTTAGCGGCGCTTTCCCA-AAACGCCGCTAAAT-TTATA
* * * ** **
136350615 GACCTTTAGCGGCGCTTAGCAAACAAACGCCACTAAAGGTGTAGACCTTTAGCGGCGTTTCTAGG
63 GACCTATAGCGGCGCTTAGCAAACAAACGCCACCAAAAGTACAGACCTTTAGCGGCGTTTCTACC
* * * *
136350680 AAAAGCGCCGCTAAAAGTACAGACCTTTAGCGGAGCTTTTGCCCAAAAAGCCGCTAAATTTATAG
1 AAAAGCGCCGCTAAAAGTAGAGTCCTTTAGCGGCGC-TTT-CCCAAAACGCCGCTAAATTTATAG
* *
136350745 ACCTATAGCGGCGCTTA-CACCAA-AAACGCCGCCAAAAGTACAGACCTTTTAGCGGTGCTTTCT
64 ACCTATAGCGGCGCTTAGCA--AACAAACGCCACCAAAAGTACAGACC-TTTAGCGGCG-TTTCT
136350808 -CC
125 ACC
* *
136350810 ACAAA-TGCCGCCAAAAGTAGAGTCCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAAATTTA
1 A-AAAGCGCCGCTAAAAGTAGAGTCCTTTAGCGGCGCTTT-CCCA-AAACGCCGCTAAATTTA
136350872 CAGATTGAAA
Statistics
Matches: 158, Mismatches: 23, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
127 4 0.03
128 29 0.18
129 57 0.36
130 60 0.38
131 8 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (127 bp):
AAAAGCGCCGCTAAAAGTAGAGTCCTTTAGCGGCGCTTTCCCAAAACGCCGCTAAATTTATAGAC
CTATAGCGGCGCTTAGCAAACAAACGCCACCAAAAGTACAGACCTTTAGCGGCGTTTCTACC
Found at i:136351274 original size:21 final size:21
Alignment explanation
Indices: 136351193--136351266 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
136351183 CTGCTTTGCT
* *
136351193 CTGCCTCTCTCGCTGCTGCCA
1 CTGCCTCCCTCGCTGCTGCCG
136351214 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
136351235 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
136351256 CTGCCTCCCTC
1 CTGCCTCCCTC
136351267 TCTACTGCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.01, C:0.53, G:0.20, T:0.26
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCG
Found at i:136355691 original size:40 final size:40
Alignment explanation
Indices: 136355633--136355787 Score: 158
Period size: 40 Copynumber: 3.9 Consensus size: 40
136355623 GGATATAGCG
* * * *
136355633 ACTCGCTCGATTGTCTTCGGGACATT-GCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTT-TAGTA
*
136355673 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* *
136355713 ACTCGCACGAA-TGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* *
136355753 ACTCGCACAAATGCCTTCGGGAC-TTAACCCGGTTT
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTTT
136355788 TGGTAATCAG
Statistics
Matches: 101, Mismatches: 9, Indels: 11
0.83 0.07 0.09
Matches are distributed among these distances:
39 8 0.08
40 89 0.88
41 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTTTAGTA
Found at i:136355788 original size:40 final size:40
Alignment explanation
Indices: 136355675--136355793 Score: 184
Period size: 40 Copynumber: 3.0 Consensus size: 40
136355665 TTATAGTGAT
* * * * *
136355675 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
*
136355715 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
136355755 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAA
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAA
136355794 TCAGCAAGTC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
Found at i:136359980 original size:40 final size:39
Alignment explanation
Indices: 136359936--136360153 Score: 226
Period size: 40 Copynumber: 5.5 Consensus size: 39
136359926 GCTCGATTGT
* * *
136359936 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
136359976 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
136360016 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
136360056 CTT-GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
136360095 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
136360136 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
136360154 ACACCATTCG
Statistics
Matches: 154, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 41 0.27
40 85 0.55
41 27 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:136360074 original size:39 final size:40
Alignment explanation
Indices: 136359964--136360154 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 40
136359954 TTATAGTGAT
* * *
136359964 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
136360004 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* *
136360044 TCGCACAAATGCCTT-GGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
136360083 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
136360123 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
136360155 CACCATTCGA
Statistics
Matches: 132, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 39 0.30
40 67 0.51
41 26 0.20
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
Found at i:136364470 original size:9 final size:9
Alignment explanation
Indices: 136364456--136364592 Score: 103
Period size: 9 Copynumber: 14.6 Consensus size: 9
136364446 ATGTATTAGT
*
136364456 TAAGTTATA
1 TAAGTTATG
136364465 TAAGTTATG
1 TAAGTTATG
*
136364474 TGAGTTATG
1 TAAGTTATG
*
136364483 TAAGTTGCTATA
1 TAAG-T--TATG
*
136364495 TACGTTATG
1 TAAGTTATG
* *
136364504 TGAGTTATA
1 TAAGTTATG
*
136364513 TAAATTATG
1 TAAGTTATG
136364522 TAAGTTATG
1 TAAGTTATG
136364531 TAAGTTATG
1 TAAGTTATG
*
136364540 TAGGTTGTTATG
1 TA---AGTTATG
*
136364552 TAAATTATG
1 TAAGTTATG
*
136364561 TAAGTTACG
1 TAAGTTATG
*
136364570 TGAGTTATG
1 TAAGTTATG
* *
136364579 TAACTTATT
1 TAAGTTATG
136364588 TAAGT
1 TAAGT
136364593 AATGATCAAT
Statistics
Matches: 98, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
9 82 0.84
10 1 0.01
11 1 0.01
12 14 0.14
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:136364496 original size:30 final size:29
Alignment explanation
Indices: 136364461--136364567 Score: 101
Period size: 30 Copynumber: 3.7 Consensus size: 29
136364451 TTAGTTAAGT
*
136364461 TATATAAGTTATGTGAGTTATGTAAGTTG
1 TATATAAGTTATGTAAGTTATGTAAGTTG
* * * *
136364490 CTATATACGTTATGTGAGTTATATAA-AT-
1 -TATATAAGTTATGTAAGTTATGTAAGTTG
* *
136364518 TATGTAAGTTATGTAAGTTATGTAGGTTG
1 TATATAAGTTATGTAAGTTATGTAAGTTG
* *
136364547 TTATGTAAATTATGTAAGTTA
1 -TATATAAGTTATGTAAGTTA
136364568 CGTGAGTTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 20 0.31
28 1 0.02
29 1 0.02
30 42 0.66
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.45
Consensus pattern (29 bp):
TATATAAGTTATGTAAGTTATGTAAGTTG
Found at i:136364550 original size:48 final size:50
Alignment explanation
Indices: 136364456--136364586 Score: 144
Period size: 48 Copynumber: 2.7 Consensus size: 50
136364446 ATGTATTAGT
*
136364456 TAAGTTATATAAGTTATGTGAGTTATGTAAG-T-TGCTATATACGTTATG
1 TAAGTTATATAAGTTATGTGAGTTATGTAAGTTATGCTAGATACGTTATG
* * * * *
136364504 TGAGTTATATAAATTATGTAAGTTATGTAAGTTATG-TAGGT-TGTTATG
1 TAAGTTATATAAGTTATGTGAGTTATGTAAGTTATGCTAGATACGTTATG
* * * *
136364552 TAAATTATGTAAGTTACGTGAGTTATGTAACTTAT
1 TAAGTTATATAAGTTATGTGAGTTATGTAAGTTAT
136364587 TTAAGTAATG
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 62 0.91
49 4 0.06
50 2 0.03
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (50 bp):
TAAGTTATATAAGTTATGTGAGTTATGTAAGTTATGCTAGATACGTTATG
Found at i:136364578 original size:57 final size:57
Alignment explanation
Indices: 136364456--136364592 Score: 148
Period size: 57 Copynumber: 2.4 Consensus size: 57
136364446 ATGTATTAGT
* * ** * *
136364456 TAAGTTATATAAGTTATGTGAGTTATGTAAGTTGCTATATACGTTATGTGAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGCTATATAAATTATGTAAGTTACA
* * * * *
136364513 TAAATTATGTAAGTTATGTAAGTTATGTAGGTTGTTATGTAAATTATGTAAGTTACG
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGCTATATAAATTATGTAAGTTACA
* * *
136364570 TGAGTTATGTAACTTATTTAAGT
1 TAAGTTATGTAAGTTATGTAAGT
136364593 AATGATCAAT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.45
Consensus pattern (57 bp):
TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGCTATATAAATTATGTAAGTTACA
Found at i:136366547 original size:25 final size:26
Alignment explanation
Indices: 136366492--136366547 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
136366482 TTATAATTAA
* * *
136366492 ATTAATATAATATATAAAAATTTAGG
1 ATTAATATAAGATAAAAAAATTTACG
*
136366518 A-TAATATTAGATAAAAAAATTT-CG
1 ATTAATATAAGATAAAAAAATTTACG
136366542 ATTAAT
1 ATTAAT
136366548 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.08
25 22 0.88
26 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (26 bp):
ATTAATATAAGATAAAAAAATTTACG
Found at i:136367952 original size:7 final size:7
Alignment explanation
Indices: 136367940--136367988 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
136367930 ACAAAATCAG
136367940 ACCCTAA
1 ACCCTAA
136367947 ACCCTAA
1 ACCCTAA
* *
136367954 ATCTTAA
1 ACCCTAA
136367961 ACCCTAA
1 ACCCTAA
*
136367968 ACTCTAA
1 ACCCTAA
*
136367975 ACCATAA
1 ACCCTAA
136367982 ACCCTAA
1 ACCCTAA
136367989 CCTTATAAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:136367965 original size:21 final size:21
Alignment explanation
Indices: 136367940--136368011 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
136367930 ACAAAATCAG
*
136367940 ACCCTAAACCCTAAATCTTAA
1 ACCCTAAACCCTAAAACTTAA
* * *
136367961 ACCCTAAACTCTAAACCATAA
1 ACCCTAAACCCTAAAACTTAA
*
136367982 ACCCT-AACCTTATAAACATTAA
1 ACCCTAAACCCTA-AAAC-TTAA
136368004 ACCCTAAA
1 ACCCTAAA
136368012 TTCTAGATAC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 5 0.12
21 26 0.63
22 8 0.20
23 2 0.05
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (21 bp):
ACCCTAAACCCTAAAACTTAA
Found at i:136369230 original size:15 final size:16
Alignment explanation
Indices: 136369212--136369301 Score: 59
Period size: 15 Copynumber: 6.1 Consensus size: 16
136369202 TAAATCAAAA
136369212 CACTAAACCCCT-AAC
1 CACTAAACCCCTAAAC
*
136369227 CACT-AACCCTTAAAC
1 CACTAAACCCCTAAAC
*
136369242 CCCTAAA-CCCTAAAC
1 CACTAAACCCCTAAAC
** *
136369257 CAC-AAAAACATAAAC
1 CACTAAACCCCTAAAC
* *
136369272 CA-TGAACCCTTAAA-
1 CACTAAACCCCTAAAC
*
136369286 C-CTAAACCCATAAAC
1 CACTAAACCCCTAAAC
136369301 C
1 C
136369302 CTCAATACCG
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
14 20 0.35
15 35 0.61
16 2 0.04
ACGTcount: A:0.46, C:0.39, G:0.01, T:0.14
Consensus pattern (16 bp):
CACTAAACCCCTAAAC
Found at i:136369255 original size:7 final size:7
Alignment explanation
Indices: 136369209--136369317 Score: 53
Period size: 7 Copynumber: 14.6 Consensus size: 7
136369199 CTATAAATCA
*
136369209 AAACACT
1 AAACCCT
136369216 AAACCCCT
1 AAA-CCCT
136369224 -AACCACT
1 AAACC-CT
136369231 -AACCCTT
1 AAACCC-T
136369238 AAACCCCT
1 AAA-CCCT
136369246 AAACCCT
1 AAACCCT
*
136369253 AAACCACA
1 AAACC-CT
* *
136369261 AAAACAT
1 AAACCCT
*
136369268 AAACCAT
1 AAACCCT
*
136369275 GAACCCTT
1 AAACCC-T
136369283 AAA-CCT
1 AAACCCT
136369289 AAACCCAT
1 AAACCC-T
136369297 AAACCCT
1 AAACCCT
136369304 CAATACCGCT
1 -AA-ACC-CT
136369314 AAAC
1 AAAC
136369318 ATTAAGATCA
Statistics
Matches: 81, Mismatches: 9, Indels: 23
0.72 0.08 0.20
Matches are distributed among these distances:
6 7 0.09
7 36 0.44
8 28 0.35
9 8 0.10
10 2 0.02
ACGTcount: A:0.46, C:0.38, G:0.02, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:136369436 original size:35 final size:35
Alignment explanation
Indices: 136369371--136369452 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
136369361 CAAAATAACA
** *
136369371 AAACCCTAAACCATAAAATTAACATTTTAAATCTT
1 AAACCCTAAACCATAAAATTAACACCTTAAATATT
**
136369406 AAACCCTAAACCATAGACCTTAA-ACCTTAAATATT
1 AAACCCTAAACCATA-AAATTAACACCTTAAATATT
*
136369441 AAACCGTAAACC
1 AAACCCTAAACC
136369453 CAAAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 35 0.88
36 5 0.12
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (35 bp):
AAACCCTAAACCATAAAATTAACACCTTAAATATT
Found at i:136369573 original size:41 final size:41
Alignment explanation
Indices: 136369506--136370033 Score: 677
Period size: 41 Copynumber: 12.9 Consensus size: 41
136369496 AATTCAAAAA
* * * *
136369506 AGACGTTTAGCGGCGTTTCTCTAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
136369547 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
136369588 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
136369629 AGACTTTTGGCGGCGTTTTTCCAAAAAACGCCGCGAATACTC
1 AGACTTTTGGCGGCGTTTTTCC-AAAAACGCCGCTAATGCTC
* * *
136369671 AGACTTTTGGCGGCATTTTCCCAAAAACGCCGCTAATACTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * *
136369712 AGACTTTTGGAGGCATTTTCCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
136369753 AGTA-TTTTGGCGGCG-TTTTCCGACAAACGCCGCTAATTCTC
1 AG-ACTTTTGGCGGCGTTTTTCC-AAAAACGCCGCTAATGCTC
* * *
136369794 AGACTTTTAGCGACGTTTTTCCAACAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
*** * * *
136369835 AGACTTTTAAAGGCGCTTTTCCAACAACGCCGCTAATGTTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * * *
136369876 AGACTTTTGGCGGTGTTTTTCTAAAAATGACGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** *
136369917 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCGGATTCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
*
136369958 AGACTTTTGGCGGCG--TTTCCTGAAAAACGCCGCTAATTCTC
1 AGACTTTTGGCGGCGTTTTTCC--AAAAACGCCGCTAATGCTC
* **
136369999 GGACTTTTGGCGGCGTTTTTCTGAAAACGCCGCTA
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTA
136370034 TTTCATGACT
Statistics
Matches: 430, Mismatches: 48, Indels: 18
0.87 0.10 0.04
Matches are distributed among these distances:
39 5 0.01
40 6 0.01
41 371 0.86
42 44 0.10
43 4 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (41 bp):
AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
Found at i:136371661 original size:17 final size:16
Alignment explanation
Indices: 136371641--136371687 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
136371631 TTATTTTTAC
136371641 TTTATTTTACTTTTCCT
1 TTTATTTTA-TTTTCCT
*
136371658 TTTATTTTTATTTTTCT
1 TTTA-TTTTATTTTCCT
136371675 TTTATTTTTATTT
1 TTTA-TTTTATTT
136371688 CTATTTCCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 23 0.82
18 5 0.18
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTATTTTCCT
Found at i:136371667 original size:23 final size:23
Alignment explanation
Indices: 136371641--136371693 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
136371631 TTATTTTTAC
*
136371641 TTTATTTTACTTTTCCTTTTATT
1 TTTATTTTACTTTTACTTTTATT
* *
136371664 TTTATTTTTCTTTTATTTTTATT
1 TTTATTTTACTTTTACTTTTATT
*
136371687 TCTATTT
1 TTTATTT
136371694 CCAGTTTTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTATTTTACTTTTACTTTTATT
Found at i:136371685 original size:6 final size:6
Alignment explanation
Indices: 136371630--136371693 Score: 53
Period size: 6 Copynumber: 11.2 Consensus size: 6
136371620 TTTGAGTCTA
* * ** *
136371630 TTTATT TTTA-C TTTA-T TTTACT TTTCCT TTTATT TTTATT TTT-CT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
136371675 TTTATT TTTATT TCTATT T
1 TTTATT TTTATT TTTATT T
136371694 CCAGTTTTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
5 12 0.25
6 36 0.75
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:136377428 original size:42 final size:41
Alignment explanation
Indices: 136377365--136377519 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
136377355 CCAAGACTAT
* * *
136377365 GTGTAAGACCATGTGTTGGATATGGCATCATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCA-TATGAGATTTC
* *
136377407 GTGTAAGACCATATCTAGGATATGGCATCCATATGACATTTC
1 GTGTAAGACCATATCTGGGATATGGCAT-CATATGAGATTTC
* * * * *
136377449 GTGTAAAACCATAGCTGGGCTTTTGGCATCGATATGAGATTAC
1 GTGTAAGACCATATCTGGG-ATATGGCATC-ATATGAGATTTC
*
136377492 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
136377520 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 59 0.63
43 35 0.37
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (41 bp):
GTGTAAGACCATATCTGGGATATGGCATCATATGAGATTTC
Found at i:136377497 original size:43 final size:43
Alignment explanation
Indices: 136377429--136377510 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
136377419 ATCTAGGATA
* *
136377429 TGGCATCCATATGACATTTCGTGTAAAACCATAGCTGGGCTTT
1 TGGCATCCATATGACATTACATGTAAAACCATAGCTGGGCTTT
* * * *
136377472 TGGCATCGATATGAGATTACATGTAAGACCATATCTGGG
1 TGGCATCCATATGACATTACATGTAAAACCATAGCTGGG
136377511 ATATGGCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (43 bp):
TGGCATCCATATGACATTACATGTAAAACCATAGCTGGGCTTT
Found at i:136379946 original size:79 final size:80
Alignment explanation
Indices: 136379815--136380017 Score: 342
Period size: 79 Copynumber: 2.6 Consensus size: 80
136379805 AACCCAAGTA
*
136379815 CCTTCGGGATTTAG-CCGGATATA--AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
136379877 TAACTCGCACAAATG
66 TAACTCGCACAAATG
136379892 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG-CTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
136379956 TAACTCGTACAAATG
66 TAACTCGCACAAATG
* *
136379971 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
136380018 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
77 13 0.11
78 9 0.08
79 76 0.64
80 20 0.17
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:136380024 original size:40 final size:40
Alignment explanation
Indices: 136379815--136380017 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
136379805 AACCCAAGTA
*
136379815 CCTTCGGGATTTAG-CCGGATATA--AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
136379852 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
136379892 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
136379932 -CTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
136379971 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
136380011 CCTTCGG
1 CCTTCGG
136380018 ATCTTAGTCC
Statistics
Matches: 157, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
37 13 0.08
38 9 0.06
39 38 0.24
40 97 0.62
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:136385119 original size:40 final size:40
Alignment explanation
Indices: 136385074--136385203 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
136385064 CGGAATACAA
136385074 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
136385114 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
136385154 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
136385194 CCGGATATAA
1 CCGGATATAA
136385204 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:136385218 original size:40 final size:40
Alignment explanation
Indices: 136385074--136385241 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
136385064 CGGAATACAA
* **
136385074 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
136385114 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
136385154 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
136385194 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
136385234 CCGGATAT
1 CCGGATAT
136385242 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:136393813 original size:53 final size:54
Alignment explanation
Indices: 136393747--136393883 Score: 158
Period size: 53 Copynumber: 2.6 Consensus size: 54
136393737 AAAGTACCCC
* *
136393747 CGATTTA-ATAATTACCGTTTTACCCTCGATTTACAGAATTAC-CGTTTACCT-T
1 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAGTTTA-CTGT
* * *
136393799 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTATTTTACTGT
1 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAGTTTACTGT
* *
136393853 TGA-TTGT-GAAATTACCGTTTTACCCTCGATT
1 CGATTTATAG-AATTACCGTTTTACCCTCGATT
136393884 GTGAATTACT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
52 8 0.11
53 57 0.79
54 7 0.10
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.43
Consensus pattern (54 bp):
CGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTAGTTTACTGT
Found at i:136393888 original size:26 final size:27
Alignment explanation
Indices: 136393741--136393883 Score: 141
Period size: 26 Copynumber: 5.4 Consensus size: 27
136393731 ATTACCAAAG
* *
136393741 TACCCCCGATTTA-ATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
136393767 TACCCTCGATTTACAGAATTACCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
136393793 TACCTTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
136393820 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
** * *
136393847 TACTGTTGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
136393873 TACCCTCGATT
1 TACCCTCGATT
136393884 GTGAATTACT
Statistics
Matches: 97, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 52 0.54
27 44 0.45
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:136393953 original size:54 final size:54
Alignment explanation
Indices: 136393895--136394012 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
136393885 TGAATTACTG
* *
136393895 AAATACCCCTA-TAGGGTAGAATTACAAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCCTAGT-GGGTAAAATTACAAAAATACCCTC-AATTTGTAAAATTACCA
* ** ** *
136393949 AAATACCACTAGTTTGTAAAATTACCGAAATATCCTCAATTTGTAAAATTACCA
1 AAATACCCCTAGTGGGTAAAATTACAAAAATACCCTCAATTTGTAAAATTACCA
136394003 AAATACCCCT
1 AAATACCCCT
136394013 GATTTACAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (54 bp):
AAATACCCCTAGTGGGTAAAATTACAAAAATACCCTCAATTTGTAAAATTACCA
Found at i:136394026 original size:27 final size:27
Alignment explanation
Indices: 136393914--136394012 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
136393904 TATAGGGTAG
*
136393914 AATTACAAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
136393941 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
136393968 AATTACCGAAATA-TCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
136393995 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
136394013 GATTTACAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 57 0.92
28 3 0.05
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:136394033 original size:27 final size:27
Alignment explanation
Indices: 136394003--136394096 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
136393993 AAAATTACCA
*
136394003 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
136394030 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
136394059 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
136394086 AAATACCCTTG
1 AAATACCCTTG
136394097 GTTTGTATAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
27 30 0.52
28 7 0.12
29 21 0.36
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:136394186 original size:27 final size:27
Alignment explanation
Indices: 136394156--136394214 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
136394146 CCCTAATAGA
136394156 TAAAAAGACCATAA-AGCCACTGTAGGG
1 TAAAAAGACCATAATA-CCACTGTAGGG
* * * *
136394183 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAAAGACCATAATACCACTGTAGGG
136394210 TAAAA
1 TAAAA
136394215 TGACGAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (27 bp):
TAAAAAGACCATAATACCACTGTAGGG
Found at i:136395083 original size:26 final size:25
Alignment explanation
Indices: 136395030--136395088 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
136395020 AGGAAGTGCT
* * *
136395030 AAAAGGACTCTGCCCAAGTTTACCG
1 AAAAGGGCTCTACCCAAGTTTACAG
*
136395055 AAAAGGGCTCTACCCCAGTTTATCAG
1 AAAAGGGCTCTACCCAAGTTTA-CAG
136395081 -AAAGGGCT
1 AAAAGGGCT
136395089 TTGCCCCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 27 0.93
26 2 0.07
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.20
Consensus pattern (25 bp):
AAAAGGGCTCTACCCAAGTTTACAG
Found at i:136395370 original size:31 final size:31
Alignment explanation
Indices: 136395332--136395401 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
136395322 GGCTTCAGCT
136395332 AGTGATATGATTTATGAAAAGCCTTCGGCCC
1 AGTGATATGATTTATGAAAAGCCTTCGGCCC
* * *
136395363 AGTGATATGATTTATGAAAAGGCTTTGGCCT
1 AGTGATATGATTTATGAAAAGCCTTCGGCCC
136395394 AGT-ATATG
1 AGTGATATG
136395402 TCGAGACTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (31 bp):
AGTGATATGATTTATGAAAAGCCTTCGGCCC
Found at i:136400309 original size:30 final size:31
Alignment explanation
Indices: 136400273--136400335 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
136400263 CCTTTTCATA
136400273 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
136400303 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
136400334 TT
1 TT
136400336 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:136400590 original size:23 final size:23
Alignment explanation
Indices: 136400526--136400689 Score: 244
Period size: 24 Copynumber: 7.0 Consensus size: 23
136400516 TGCTTTATCA
*
136400526 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
136400550 TAATAACTGGGGCA-AAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
136400573 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
136400596 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
136400619 TAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
136400643 TAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
136400667 AATAACT-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
136400689 T
1 T
136400690 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 3, Indels: 10
0.91 0.02 0.07
Matches are distributed among these distances:
22 27 0.20
23 44 0.33
24 54 0.41
25 8 0.06
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:136400625 original size:47 final size:48
Alignment explanation
Indices: 136400527--136400689 Score: 257
Period size: 47 Copynumber: 3.5 Consensus size: 48
136400517 GCTTTATCAT
*
136400527 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
136400574 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
136400621 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
136400668 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136400690 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
45 12 0.11
46 35 0.32
47 45 0.41
48 19 0.17
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:136400629 original size:24 final size:24
Alignment explanation
Indices: 136400527--136400689 Score: 257
Period size: 23 Copynumber: 7.0 Consensus size: 24
136400517 GCTTTATCAT
*
136400527 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
136400552 ATAACTGGGGCA-AAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
136400574 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
136400597 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136400621 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136400645 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136400668 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136400690 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 1, Indels: 10
0.92 0.01 0.07
Matches are distributed among these distances:
22 24 0.18
23 51 0.38
24 50 0.38
25 8 0.06
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:136400761 original size:9 final size:9
Alignment explanation
Indices: 136400747--136400803 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
136400737 ATCTCATGTG
136400747 CATATCATA
1 CATATCATA
*
136400756 CATATCATGTG
1 CATATCA--TA
136400767 CATATCATA
1 CATATCATA
* *
136400776 CATGTCATGTG
1 CATATCA--TA
136400787 CATATCATA
1 CATATCATA
136400796 CATATCAT
1 CATATCAT
136400804 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:136400763 original size:20 final size:20
Alignment explanation
Indices: 136400735--136400805 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
136400725 GCATTTATGA
*
136400735 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136400755 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136400775 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136400795 ACATATCATGT
1 ACATATCATGT
136400806 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:136400770 original size:11 final size:11
Alignment explanation
Indices: 136400740--136400794 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
136400730 TATGAACATC
136400740 TCATGTGCATA
1 TCATGTGCATA
*
136400751 TCA--TACATA
1 TCATGTGCATA
136400760 TCATGTGCATA
1 TCATGTGCATA
* *
136400771 TCA--TACATG
1 TCATGTGCATA
136400780 TCATGTGCATA
1 TCATGTGCATA
136400791 TCAT
1 TCAT
136400795 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:136401317 original size:8 final size:8
Alignment explanation
Indices: 136401304--136401347 Score: 79
Period size: 8 Copynumber: 5.5 Consensus size: 8
136401294 AAATGCCAGA
136401304 ATTTCGGC
1 ATTTCGGC
136401312 ATTTCGGC
1 ATTTCGGC
136401320 ATTTCGGC
1 ATTTCGGC
136401328 ATTTCGGC
1 ATTTCGGC
*
136401336 TTTTCGGC
1 ATTTCGGC
136401344 ATTT
1 ATTT
136401348 ATCGTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (8 bp):
ATTTCGGC
Found at i:136408416 original size:30 final size:31
Alignment explanation
Indices: 136408380--136408442 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
136408370 CCTTTTCATA
136408380 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
136408410 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
136408441 TT
1 TT
136408443 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:136408698 original size:24 final size:24
Alignment explanation
Indices: 136408634--136408773 Score: 209
Period size: 23 Copynumber: 6.0 Consensus size: 24
136408624 GCTTTATCAT
*
136408634 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
136408659 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136408682 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
136408705 ATAACTGGGGCA-AAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
136408728 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
136408752 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
136408774 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
22 10 0.09
23 58 0.53
24 33 0.30
25 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:136408845 original size:9 final size:9
Alignment explanation
Indices: 136408831--136408887 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
136408821 ATCTCATGTG
136408831 CATATCATA
1 CATATCATA
*
136408840 CATATCATGTG
1 CATATCA--TA
136408851 CATATCATA
1 CATATCATA
* *
136408860 CATGTCATGTG
1 CATATCA--TA
136408871 CATATCATA
1 CATATCATA
136408880 CATATCAT
1 CATATCAT
136408888 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:136408847 original size:20 final size:20
Alignment explanation
Indices: 136408819--136408889 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
136408809 GCATTTATGA
*
136408819 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136408839 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136408859 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136408879 ACATATCATGT
1 ACATATCATGT
136408890 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:136408854 original size:11 final size:11
Alignment explanation
Indices: 136408824--136408878 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
136408814 TATGAACATC
136408824 TCATGTGCATA
1 TCATGTGCATA
*
136408835 TCA--TACATA
1 TCATGTGCATA
136408844 TCATGTGCATA
1 TCATGTGCATA
* *
136408855 TCA--TACATG
1 TCATGTGCATA
136408864 TCATGTGCATA
1 TCATGTGCATA
136408875 TCAT
1 TCAT
136408879 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:136410119 original size:18 final size:17
Alignment explanation
Indices: 136410092--136410125 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
136410082 TAGGGAAGAA
136410092 AATAAGAAGAGAAAACT
1 AATAAGAAGAGAAAACT
136410109 AATACAGAAGAGAAAAC
1 AATA-AGAAGAGAAAAC
136410126 GACACAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.09, G:0.18, T:0.09
Consensus pattern (17 bp):
AATAAGAAGAGAAAACT
Found at i:136416413 original size:48 final size:48
Alignment explanation
Indices: 136416307--136416664 Score: 387
Period size: 48 Copynumber: 7.4 Consensus size: 48
136416297 CATGTCCCGG
* * * * *
136416307 ACATGGTCTTACACTGGCTCTCATACATCAATGTCGATGGCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATA-A-CAATGCCGATGCCATGTTCCAA
* *
136416357 ACACGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * *** * * * *
136416405 ATATGGTCTTACACTGGCT-TGCATATTGAGGCAGATGCCATG-TCTTAG
1 ACATGGTCTTACACTAGCTCT-CATAACAATGCCGATGCCATGTTC-CAA
* *
136416453 ACATAGTCTTACACTAGCTCTCATAACAATGCCGATGTCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * ** *** * * *
136416501 ATATGGTCTTACACTGGCTAGCATATTGAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* *
136416549 ACATGGTTTTACAATAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
136416597 ACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
136416645 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
136416665 ACACATAACT
Statistics
Matches: 249, Mismatches: 55, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.01
48 221 0.89
49 4 0.02
50 22 0.09
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
Found at i:136417879 original size:24 final size:26
Alignment explanation
Indices: 136417852--136417914 Score: 103
Period size: 24 Copynumber: 2.5 Consensus size: 26
136417842 ACCAAACAAA
136417852 TATCTTCCACTAACCTATTAATA-G-
1 TATCTTCCACTAACCTATTAATAGGT
136417876 TATCTTCCACTAACCTATTAATAGGT
1 TATCTTCCACTAACCTATTAATAGGT
*
136417902 TAACTTCCACTAA
1 TATCTTCCACTAA
136417915 AAATTCTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 23 0.64
25 1 0.03
26 12 0.33
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (26 bp):
TATCTTCCACTAACCTATTAATAGGT
Found at i:136419281 original size:20 final size:21
Alignment explanation
Indices: 136419256--136419295 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
136419246 CCTTAGAAAC
*
136419256 AGGGC-ACACGTCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
136419276 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
136419296 CCATTAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:136428176 original size:20 final size:21
Alignment explanation
Indices: 136428151--136428190 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
136428141 CTCTTGAAAT
136428151 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
136428171 AGGGCAACACGTCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
136428191 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:136430759 original size:22 final size:23
Alignment explanation
Indices: 136430711--136430759 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
136430701 TTCCTTCTAG
* *
136430711 GGTTCACATAGACATACATATAG
1 GGTTCACATAGACAAACATATAA
* *
136430734 GGTTCACATATA-AAACATGTAA
1 GGTTCACATAGACAAACATATAA
136430756 GGTT
1 GGTT
136430760 TGCATAGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (23 bp):
GGTTCACATAGACAAACATATAA
Found at i:136431030 original size:28 final size:28
Alignment explanation
Indices: 136430999--136431058 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
136430989 TATTAAATCC
* * *
136430999 TATAAGA-TTTAGTATATAGGTTCGCATA
1 TATAAGAGTTTA-TATAAAGGTTCACACA
*
136431027 TATAATAGTTTATATAAAGGTTCACACA
1 TATAAGAGTTTATATAAAGGTTCACACA
136431055 TATA
1 TATA
136431059 GGGTTTCGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.85
29 4 0.15
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (28 bp):
TATAAGAGTTTATATAAAGGTTCACACA
Found at i:136434805 original size:38 final size:38
Alignment explanation
Indices: 136434753--136435078 Score: 229
Period size: 38 Copynumber: 7.8 Consensus size: 38
136434743 ATTGATTCAT
*
136434753 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* *
136434791 TAACGTGGTACTAAGTGGATATACCACGGTTAAATGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* * *
136434829 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATA
1 TAACGTGGTGCTAAGTGGATATACCACG-GT-----TA---A-ACGTG
* * *
136434877 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
* *
136434924 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
* * * * *
136434962 TAATGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A-CG--T--G
* *
136435009 TAACGCGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
*
136435047 TAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
136435079 TACATGTTAA
Statistics
Matches: 229, Mismatches: 33, Indels: 52
0.73 0.11 0.17
Matches are distributed among these distances:
38 121 0.53
39 1 0.00
40 3 0.01
41 1 0.00
42 5 0.02
43 2 0.01
44 5 0.02
45 4 0.02
47 58 0.25
48 29 0.13
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACGTG
Found at i:136434928 original size:133 final size:132
Alignment explanation
Indices: 136434791--136435040 Score: 383
Period size: 133 Copynumber: 1.9 Consensus size: 132
136434781 GTTATACGTG
**
136434791 TAACGTGGTACTAAGTGGATATACCACGGTTAAATGTGTAACGTGGTGCTAAGTGGATATACCAC
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
* *
136434856 GATTACACATATTGATACATATAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATT
66 GATTACACATATTGATACAT-TAACGCGGTGCTAAGTGGATATACCACGGTTACATATATTGATT
136434921 CAT
130 CAT
* * * * *
136434924 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATGTAATGTGGTGCTAAGTGGATATGCCAT
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
* * *
136434989 GGTTACATATATTGATTCATTAACGCGGTGCTAAGTGGATATACCACGGTTA
66 GATTACACATATTGATACATTAACGCGGTGCTAAGTGGATATACCACGGTTA
136435041 AACATGTAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 30 0.29
133 75 0.71
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (132 bp):
TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATACCAC
GATTACACATATTGATACATTAACGCGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
AT
Found at i:136434940 original size:171 final size:171
Alignment explanation
Indices: 136434655--136434993 Score: 579
Period size: 171 Copynumber: 2.0 Consensus size: 171
136434645 AAATGTGTAC
* ** *
136434655 GTGTAACGTGGTGCTAAGTGGATATACCATGATTACATGTATTGATACATGTAACGTGGTGCTAA
1 GTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATATAACGTGGTGCTAA
136434720 GTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
66 GTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
* *
136434785 TACGTGTAACGTGGTACTAAGTGGATATACCACGGTTAAAT
131 AACATGTAACGTGGTACTAAGTGGATATACCACGGTTAAAT
136434826 GTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATATAACGTGGTGCTAA
1 GTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATATAACGTGGTGCTAA
*
136434891 GTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCATGGTTA
66 GTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
* * * *
136434956 AACATGTAATGTGGTGCTAAGTGGATATGCCATGGTTA
131 AACATGTAACGTGGTACTAAGTGGATATACCACGGTTA
136434994 CATATATTGA
Statistics
Matches: 157, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
171 157 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (171 bp):
GTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATATAACGTGGTGCTAA
GTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGTTA
AACATGTAACGTGGTACTAAGTGGATATACCACGGTTAAAT
Found at i:136434987 original size:85 final size:85
Alignment explanation
Indices: 136434701--136435078 Score: 504
Period size: 85 Copynumber: 4.4 Consensus size: 85
136434691 ATGTATTGAT
136434701 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
136434766 AGTGGATATACCACGGTTAT
66 AGTGGATATACCACGGTTAA
* * * *
136434786 ACGTGTAACGTGGTACTAAGTGGATATACCACGGTT--A-A-A-TG--T--GTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
136434842 AGTGGATATACCACGATTACACATATTGA
66 AGTGGATATACCACG-GT-----TA---A
*
136434871 TACATATAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
1 -ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
*
136434936 AAGTGGATATACCATGGTTAA
65 AAGTGGATATACCACGGTTAA
* * *
136434957 ACATGTAATGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCATTAACGCGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
136435022 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
136435042 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
136435079 TACATGTTAA
Statistics
Matches: 254, Mismatches: 20, Indels: 38
0.81 0.06 0.12
Matches are distributed among these distances:
76 28 0.11
77 1 0.00
78 1 0.00
80 2 0.01
81 1 0.00
82 3 0.01
83 1 0.00
85 148 0.58
86 33 0.13
88 1 0.00
89 3 0.01
90 1 0.00
91 2 0.01
93 1 0.00
94 1 0.00
95 27 0.11
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:136438013 original size:42 final size:42
Alignment explanation
Indices: 136437951--136438068 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 42
136437941 ATGTCGATGC
* * **
136437951 CAATGCCATGTCCCAAACATGGTCTTATACGGGACCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
* * *
136437993 CGATGCCATGTCCCAGACATGATCTTACACGAAATCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
* * *
136438035 CAATGCCATATCCCAGATATGGTCTTACATGAAA
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAA
136438069 TCACATACCG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
Found at i:136438019 original size:90 final size:90
Alignment explanation
Indices: 136437856--136438042 Score: 223
Period size: 90 Copynumber: 2.1 Consensus size: 90
136437846 TACCACATAA
* * * ** *
136437856 AATGCCAAAGCCATGTCCCTAACATGGTCTTATATGGGTCTCCATACCGATGCCATATCTTAGAT
1 AATGCCAAAGCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGAC
* * * * *
136437921 ATGGTCTTATATGAAGTCTCATGTC
66 ATGATCTTACACGAAATCTCATATC
* * * *
136437946 GATGCCAATGCCATGTCCCAAACATGGTCTTATACGGGACCT-CATATCGATGCCATGTCCCAGA
1 AATGCCAAAGCCATGTCCCAAACATGGTCTTATACGGG-CCTCCATACCGATGCCATATCCCAGA
136438010 CATGATCTTACACGAAATCTCATATC
65 CATGATCTTACACGAAATCTCATATC
136438036 AATGCCA
1 AATGCCA
136438043 TATCCCAGAT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 78 0.98
91 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (90 bp):
AATGCCAAAGCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGAC
ATGATCTTACACGAAATCTCATATC
Found at i:136438069 original size:42 final size:44
Alignment explanation
Indices: 136437905--136438112 Score: 145
Period size: 42 Copynumber: 4.6 Consensus size: 44
136437895 CTCCATACCG
** * * *
136437905 ATGCCATATCTTAGATATGGTCTTATATGAAGTCTCATGTCGATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA--TC-AT-CCA
* * * * ** * *
136437953 ATGCCATGTCCCAAACATGGTCTTATACGGGACCTCAT-AT-CG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATCCA
* * *
136437995 ATGCCATGTCCCAGACATGATCTTACACGAAATCTCAT-AT-CA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATCCA
* * *
136438037 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT--C-AT-CCA
136438085 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
136438113 TGGCACACAT
Statistics
Matches: 129, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
42 69 0.53
44 2 0.02
46 3 0.02
48 55 0.43
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCATCCA
Found at i:136438122 original size:48 final size:48
Alignment explanation
Indices: 136438037--136438256 Score: 178
Period size: 48 Copynumber: 4.6 Consensus size: 48
136438027 TCTCATATCA
* ** * *
136438037 ATGCCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCA-CACATACCAACGCCG
* *
136438085 ATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCACACATACCAACGCCG
* * * * * ***
136438133 ACT-CTATGTCCCAAACATGGTCCTACACTGGC-CACATATCAACATTG
1 A-TGCCATGTCCCAGATATGGTCTTACACTGGCACACATACCAACGCCG
* * * ** *
136438180 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCAT-CTTGGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCACACATAC--CAACGCCG
*
136438229 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGATATGGTCTTACAC
136438257 GGGATCTCAT
Statistics
Matches: 139, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.01
47 37 0.27
48 68 0.49
49 33 0.24
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGATATGGTCTTACACTGGCACACATACCAACGCCG
Found at i:136440731 original size:41 final size:41
Alignment explanation
Indices: 136440686--136440803 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
136440676 TGAAAGATAA
136440686 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
136440727 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
136440757 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
136440798 ATGTAG
1 ATGTAG
136440804 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:136440742 original size:71 final size:71
Alignment explanation
Indices: 136440654--136440817 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
136440644 GAGATGTATC
136440654 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
136440719 AGGACA
66 AGGACA
136440725 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
136440790 AGGACA
66 AGGACA
136440796 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
136440818 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:136448385 original size:70 final size:71
Alignment explanation
Indices: 136448226--136448388 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
136448216 GAGATGTATC
136448226 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
136448291 AGGACA
66 AGGACA
136448297 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTC-CATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
136448361 AGGACA
66 AGGACA
136448367 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
136448389 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 47 0.51
71 45 0.49
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:136458243 original size:24 final size:24
Alignment explanation
Indices: 136457952--136458235 Score: 507
Period size: 24 Copynumber: 11.9 Consensus size: 24
136457942 GCAAAGACCA
136457952 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
136457976 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
136458000 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
136458024 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
136458048 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
136458072 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
136458096 TATGGCACTATGTGTGCGATT-AC
1 TATGGCACTATGTGTGCGATTCAC
136458119 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
136458143 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
136458167 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
136458191 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
136458215 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
136458236 TGCTATAGTC
Statistics
Matches: 254, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 23 0.09
24 231 0.91
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:136467197 original size:50 final size:50
Alignment explanation
Indices: 136467116--136467222 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 50
136467106 GAGAATTCTT
* * *
136467116 TAGAAAGCCTTTGTGGCTAATCTTGTAAAAAGCCTTTGTGGCGTATTATC
1 TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
* * *
136467166 TAGAAAGCCTTTGTGGCTAATATTGTGAAAAGCTTTTTTAGAGTATTATC
1 TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
*
136467216 TGGAAAG
1 TAGAAAG
136467223 ACCGTGTGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (50 bp):
TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
Found at i:136467201 original size:24 final size:24
Alignment explanation
Indices: 136467119--136467198 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 24
136467109 AATTCTTTAG
*
136467119 AAAGCCTTTGTGGCTAATCTTGTAA
1 AAAGCCTTTGTGGCTAATATTGT-A
* *
136467144 AAAGCCTTTGTGGCGTATTA-TCTA
1 AAAGCCTTTGTGGC-TAATATTGTA
136467168 GAAAGCCTTTGTGGCTAATATTGTGA
1 -AAAGCCTTTGTGGCTAATATTGT-A
136467194 AAAGC
1 AAAGC
136467199 TTTTTTAGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.11
25 37 0.80
26 4 0.09
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (24 bp):
AAAGCCTTTGTGGCTAATATTGTA
Found at i:136468167 original size:18 final size:17
Alignment explanation
Indices: 136468139--136468172 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
136468129 ATGGCTTTCA
136468139 TAAGTTGTAAAATTTGC
1 TAAGTTGTAAAATTTGC
*
136468156 TAAGTATGTAAATTTTG
1 TAAGT-TGTAAAATTTG
136468173 TAACATCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (17 bp):
TAAGTTGTAAAATTTGC
Found at i:136469052 original size:33 final size:34
Alignment explanation
Indices: 136469005--136469070 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
136468995 AAAGTATAAC
* * *
136469005 TAATTTTTGTATTTTTATATTTTA-TAT-TATTTA
1 TAATTTATGCATTTTT-TAATTTATTATCTATTTA
136469038 TAATTTATGCATTTTTTAATTTATTATCTATTT
1 TAATTTATGCATTTTTTAATTTATTATCTATTT
136469071 TTAAATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 6 0.21
33 17 0.61
34 5 0.18
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (34 bp):
TAATTTATGCATTTTTTAATTTATTATCTATTTA
Found at i:136471637 original size:86 final size:86
Alignment explanation
Indices: 136471492--136471661 Score: 313
Period size: 86 Copynumber: 2.0 Consensus size: 86
136471482 TTATGAGAAG
*
136471492 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCGCCACCACCACC
1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
136471557 AGGTGCAAGTTAAACTATAAA
66 AGGTGCAAGTTAAACTATAAA
* *
136471578 AAGAAGCGTAAGCGACCACCAGCTCAACAGATCCCGACTCTACCATTGCCGCCACCACCACCACC
1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
136471643 AGGTGCAAGTTAAACTATA
66 AGGTGCAAGTTAAACTATA
136471662 TATATGCATC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14
Consensus pattern (86 bp):
AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
AGGTGCAAGTTAAACTATAAA
Found at i:136475084 original size:104 final size:104
Alignment explanation
Indices: 136474904--136475108 Score: 356
Period size: 104 Copynumber: 2.0 Consensus size: 104
136474894 AAACATAATT
* *
136474904 GAACATCCTCATCAAGCTATTGAGATAAGCTAAATGAGATCTCCATTGGGCATCACCTAGACGTT
1 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACGTT
136474969 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
66 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
* * **
136475008 GAACATCCTTATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGTATTGCCTAGACGTT
1 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACGTT
136475073 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTT
66 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTT
136475109 CAAGCTCACC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 95 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (104 bp):
GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACGTT
GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
Found at i:136476437 original size:30 final size:30
Alignment explanation
Indices: 136476396--136476504 Score: 110
Period size: 30 Copynumber: 3.4 Consensus size: 30
136476386 AGGAACTTAA
* *
136476396 GAAGACCTGATATCTCGTTCAAGAGCTTGG
1 GAAGACTTGATATCTCATTCAAGAGCTTGG
*
136476426 GAAGACTTGATATCTCATTCAAGATCTTGGGTTTG
1 GAAGACTTGATATCTCATTCAAGAGCTT--G---G
* *
136476461 AGAAGATTTGATATCTCATTCAGGAGCTTGG
1 -GAAGACTTGATATCTCATTCAAGAGCTTGG
*
136476492 AAAGACTTGATAT
1 GAAGACTTGATAT
136476505 TTGATTTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
30 36 0.55
31 1 0.02
32 1 0.02
34 1 0.02
35 1 0.02
36 25 0.38
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (30 bp):
GAAGACTTGATATCTCATTCAAGAGCTTGG
Found at i:136477964 original size:50 final size:50
Alignment explanation
Indices: 136477896--136477995 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
136477886 CATTGAAAAC
*
136477896 TTTATATTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
1 TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
*
136477946 TTTATACTTCAATAATTTGGGTTTTGCTATGAGGATCGATCGCAACATGG
1 TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
136477996 ACTCCATTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (50 bp):
TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
Found at i:136481017 original size:71 final size:71
Alignment explanation
Indices: 136480825--136481017 Score: 194
Period size: 70 Copynumber: 2.7 Consensus size: 71
136480815 TCATGACACT
* * * * * * **
136480825 AAACTTCGGACCTAAAGAGAGAACATTCAGCCATCGATGTCGCGATAACAACCACTCAATGTCGG
1 AAACTTCGAACCTATAGAGGGAGCATTCAACTATCGATGTCGCGATAACAACCACTCAATGTCAC
* *
136480890 GACAAC
66 AACAAA
* * * * *
136480896 AAATTTTGAA-CT-TAGAGTGGAGCATTCAACCT-TCAATGTCGCAACAACAACCACTCAATGTC
1 AAACTTCGAACCTATAGAG-GGAGCATTCAA-CTATCGATGTCGCGATAACAACCACTCAATGTC
136480958 ACAACAAA
64 ACAACAAA
* *
136480966 AAACTTCGAACCTATAGAGGGAGCATTCAATTATCGATGTTGCGATAACAAC
1 AAACTTCGAACCTATAGAGGGAGCATTCAACTATCGATGTCGCGATAACAAC
136481018 TATTCCATGT
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
69 4 0.04
70 50 0.53
71 36 0.38
72 5 0.05
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (71 bp):
AAACTTCGAACCTATAGAGGGAGCATTCAACTATCGATGTCGCGATAACAACCACTCAATGTCAC
AACAAA
Found at i:136483210 original size:46 final size:46
Alignment explanation
Indices: 136483143--136483271 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
136483133 TGTAACCCGC
* * *
136483143 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
136483189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
136483235 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
136483272 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:136485692 original size:29 final size:29
Alignment explanation
Indices: 136485653--136485740 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
136485643 CAAAGATAAC
*
136485653 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
136485682 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
136485711 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
136485741 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:136485711 original size:15 final size:15
Alignment explanation
Indices: 136485653--136485731 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
136485643 CAAAGATAAC
*
136485653 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
136485667 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
136485682 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
136485696 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
136485711 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
136485726 AAGAAA
1 AAGAAA
136485732 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:136485740 original size:15 final size:15
Alignment explanation
Indices: 136485664--136485740 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
136485654 AGAAAACCGA
136485664 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
136485679 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
136485693 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
136485707 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
136485723 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
136485738 ATA
1 ATA
136485741 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:136488747 original size:46 final size:46
Alignment explanation
Indices: 136488680--136488808 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
136488670 TGTAACCCGC
* * *
136488680 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
136488726 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
136488772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
136488809 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:136491509 original size:44 final size:44
Alignment explanation
Indices: 136491449--136491566 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 44
136491439 AGGATTCCAG
* * *
136491449 TATGTGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGA
1 TATGTGATTTACGTGTAAGACCATGTCTGGGAAAATGACATCGA
* *
136491492 TTTGTGATTTACGTGTAAGACCCTGTCTGGGAAAATGACATCGA
1 TATGTGATTTACGTGTAAGACCATGTCTGGGAAAATGACATCGA
* *
136491536 TATGTGA-TTACATGTAAGACCACGTCTGGGA
1 TATGTGATTTACGTGTAAGACCATGTCTGGGA
136491567 TGTGGATGTT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
43 30 0.46
44 35 0.54
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
TATGTGATTTACGTGTAAGACCATGTCTGGGAAAATGACATCGA
Found at i:136491732 original size:2 final size:2
Alignment explanation
Indices: 136491727--136491756 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
136491717 TGTACTTGTG
136491727 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
136491757 GAAATATGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:136496155 original size:39 final size:39
Alignment explanation
Indices: 136496112--136496307 Score: 184
Period size: 39 Copynumber: 5.0 Consensus size: 39
136496102 CTTATATCCC
* *
136496112 TGATCGCACTTATGTGCCAC-TATCGTACTTCGATACCCT
1 TGATCGCACTTATGTGCC-CTTATCATACTTCGGTACCCT
* *
136496151 TGATCACACTTATGTGCCCTTATCATACTTCGGTACACT
1 TGATCGCACTTATGTGCCCTTATCATACTTCGGTACCCT
* *
136496190 TGATCGCATTTATGTGCCCTTGTCATACTTCGGTACCCT
1 TGATCGCACTTATGTGCCCTTATCATACTTCGGTACCCT
* * * * *
136496229 TTATTGCACTTACAT-TTCCC-TGTCATACTTCGGTAGCCT
1 TGATCGCACTT--ATGTGCCCTTATCATACTTCGGTACCCT
* * * *
136496268 TGGTTGCACCTACGTGTCCC-TATCATACTTCGGTAGCCCT
1 TGATCGCACTTATGTG-CCCTTATCATACTTCGGTA-CCCT
136496308 GGTTGCACCT
Statistics
Matches: 131, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 119 0.91
40 7 0.05
41 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (39 bp):
TGATCGCACTTATGTGCCCTTATCATACTTCGGTACCCT
Found at i:136496311 original size:39 final size:39
Alignment explanation
Indices: 136496212--136496338 Score: 157
Period size: 39 Copynumber: 3.3 Consensus size: 39
136496202 TGTGCCCTTG
** * * * *
136496212 TCATACTTCGGTA-CCCTTTATTGCACTTACATTTCCCTG
1 TCATACTTCGGTAGCCC-TGGTTGCACCTACGTGTCCCTA
*
136496251 TCATACTTCGGTAGCCTTGGTTGCACCTACGTGTCCCTA
1 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGTCCCTA
136496290 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGTCCCTA
1 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGTCCCTA
**
136496329 TTGTACTTCG
1 TCATACTTCG
136496339 ATACTCTTGA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 75 0.97
40 2 0.03
ACGTcount: A:0.16, C:0.31, G:0.17, T:0.36
Consensus pattern (39 bp):
TCATACTTCGGTAGCCCTGGTTGCACCTACGTGTCCCTA
Found at i:136496975 original size:26 final size:26
Alignment explanation
Indices: 136496939--136497048 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
136496929 TGATACAAAT
136496939 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
136496965 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
136496991 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
136497017 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
136497043 TGATAA
1 TGATAA
136497049 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:136498711 original size:27 final size:27
Alignment explanation
Indices: 136498670--136498836 Score: 201
Period size: 27 Copynumber: 6.2 Consensus size: 27
136498660 GAGGAAGCGT
*
136498670 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
136498697 TCTGGTGGCTCTGCCACAAATATTTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
136498724 TCTAGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
136498751 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * * *
136498778 TCTGGTGGCCCGGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
136498806 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
136498832 TCTGG
1 TCTGG
136498837 CAGCCATGCT
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 5 0.04
27 103 0.85
28 13 0.11
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:136502889 original size:80 final size:80
Alignment explanation
Indices: 136502752--136502958 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
136502742 CAATTAATGA
* * ** * * *
136502752 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCAGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
136502817 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
136502830 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
136502895 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
136502912 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
136502959 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:136502936 original size:40 final size:39
Alignment explanation
Indices: 136502751--136502958 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
136502741 GCAATTAATG
* * * *
136502751 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * * * * * *
136502791 AAATCCAGGTTAAGACCCGAAGGCAATTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
* *
136502831 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
136502871 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * *
136502911 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
136502951 ATATCCGG
1 ATATCCGG
136502959 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:136515675 original size:40 final size:40
Alignment explanation
Indices: 136515630--136515759 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
136515620 CGGAATATAA
136515630 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
136515670 CCGGATAGAATGACTCGCACGAATACCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
136515710 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
136515750 CCGGATATAA
1 CCGGATATAA
136515760 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:136526738 original size:44 final size:44
Alignment explanation
Indices: 136526669--136527252 Score: 733
Period size: 44 Copynumber: 13.3 Consensus size: 44
136526659 TAGATCACCA
* * * * * *
136526669 ATAGCTGATTTGGCATCTCTATATTGTCAGAGAGCAAATTGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* *
136526713 ATGGCAGATTTGGCGTCTCTGTATTGATAGAGAGCAGATCGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * * *
136526757 AT-GACAGATTTGGCATCTGTGTATTGTCAGAGAGTAGATCGAAG
1 ATAG-CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * * *
136526801 ATAACAGATTTGGTGTCTCTGTGTTGACAGAGAGCAGATCAAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* *
136526845 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * *
136526889 ATAGCAGATTTGGCGTCTCTGTATTGACGGAGAGTAGATTGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* *
136526933 ATAGCAGATTTGGCGTCTCTGTATTGTCGGAGAGCAGATCGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * *
136526977 ATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * *
136527021 ATAGCAGATTTGGCGTCTCTGTATTAACGGAGAGCATATCGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * *
136527065 ATAACAGATTTGGCGTCTCTGTATTGACGGAGAGCATATCGAAG
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* *
136527109 ATAGTAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAT
1 ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
* * *
136527153 ATAGCAGATTTGGCGTCT-TAGTATTGATAAAGAGCAGATTGAA-
1 ATAGCAGATTTGGCGTCTCT-GTATTGACAGAGAGCAGATCGAAG
* * * ** *
136527196 ATAACAGATTTTGCGTCTCTGTGTTAGATGGGGAGCAGATCGAAG
1 ATAGCAGATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAAG
136527241 ATAGCAGATTTG
1 ATAGCAGATTTG
136527253 ACATTTGTAT
Statistics
Matches: 472, Mismatches: 62, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
43 22 0.05
44 440 0.93
45 10 0.02
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (44 bp):
ATAGCAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAG
Found at i:136528994 original size:17 final size:15
Alignment explanation
Indices: 136528974--136529126 Score: 73
Period size: 13 Copynumber: 10.7 Consensus size: 15
136528964 AAAAATAATG
*
136528974 TATATTAGTTTTATTTA
1 TATATTA-TATTA-TTA
136528991 TATATTATATTATTA
1 TATATTATATTATTA
* *
136529006 TATA-TGT-TTCTTA
1 TATATTATATTATTA
*
136529019 TAAATT-T-TTATTA
1 TATATTATATTATTA
*
136529032 TATA-TACATT-TTA
1 TATATTATATTATTA
*
136529045 CTTTA-TATATTATT-
1 -TATATTATATTATTA
*
136529059 TATTTTACTA-TATTTA
1 TATATTA-TATTA-TTA
*
136529075 TATATGTAAATTATTA
1 TATAT-TATATTATTA
136529091 TATATTAT-TATATTA
1 TATATTATAT-TATTA
136529106 T-T-TT-TATTATTA
1 TATATTATATTATTA
136529118 TAT-TTATAT
1 TATATTATAT
136529127 ATATAATTAA
Statistics
Matches: 107, Mismatches: 14, Indels: 33
0.69 0.09 0.21
Matches are distributed among these distances:
12 8 0.07
13 28 0.26
14 22 0.21
15 21 0.20
16 17 0.16
17 11 0.10
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (15 bp):
TATATTATATTATTA
Found at i:136529050 original size:21 final size:21
Alignment explanation
Indices: 136529025--136529079 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
136529015 CTTATAAATT
136529025 TTTATTATATATACATTTTAC
1 TTTATTATATATACATTTTAC
**
136529046 TTTA-TATATTATTTATTTTAC
1 TTTATTATA-TATACATTTTAC
*
136529067 TATATTTATATAT
1 TTTA-TTATATAT
136529080 GTAAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 17 0.61
22 3 0.11
23 4 0.14
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTATATATACATTTTAC
Found at i:136529099 original size:27 final size:26
Alignment explanation
Indices: 136529069--136529131 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
136529059 TATTTTACTA
136529069 TATTTATATATGTAAATTATTATATAT
1 TATTTATATATGTAAATTATTATAT-T
* **
136529096 TA-TTATATTATTTTTATTATTATATT
1 TATTTATA-TATGTAAATTATTATATT
*
136529122 TATATATATA
1 TATTTATATA
136529132 ATTAACATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TATTTATATATGTAAATTATTATATT
Found at i:136529124 original size:6 final size:7
Alignment explanation
Indices: 136528988--136529128 Score: 65
Period size: 6 Copynumber: 21.1 Consensus size: 7
136528978 TTAGTTTTAT
136528988 TTATATA
1 TTATATA
136528995 TTATATTA
1 TTATA-TA
136529003 TTATATA
1 TTATATA
*
136529010 TGT-T-TC
1 T-TATATA
*
136529016 TTATAAA
1 TTATATA
*
136529023 TT-TTTA
1 TTATATA
136529029 TTATATA
1 TTATATA
*
136529036 -TACAT-
1 TTATATA
136529041 TT-TACT-
1 TTATA-TA
136529047 TTATATA
1 TTATATA
*
136529054 TTATTTA
1 TTATATA
136529061 TT-T-TA
1 TTATATA
*
136529066 CTATAT-
1 TTATATA
136529072 TTATATA
1 TTATATA
*
136529079 TGTAAATTA
1 T-TATA-TA
136529088 TTATATA
1 TTATATA
136529095 TTATTATA
1 TTA-TATA
*
136529103 TTAT-TT
1 TTATATA
136529109 TTAT-TA
1 TTATATA
136529115 TTATAT-
1 TTATATA
136529121 TTATATA
1 TTATATA
136529128 T
1 T
136529129 ATAATTAACA
Statistics
Matches: 102, Mismatches: 15, Indels: 34
0.68 0.10 0.23
Matches are distributed among these distances:
5 5 0.05
6 39 0.38
7 34 0.33
8 21 0.21
9 3 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (7 bp):
TTATATA
Found at i:136530444 original size:80 final size:85
Alignment explanation
Indices: 136530351--136530507 Score: 234
Period size: 85 Copynumber: 1.9 Consensus size: 85
136530341 ATACTCGAAC
* *
136530351 CTAAAACCTCACATACACAAGCA-T-AA-AA-TAAATTTACTTGAAAATTTTTAATAATTCAAAA
1 CTAAAACCTCACATACACAACCACTAAACAAGTAAATTTACTTGAAAATTTTTAACAATTCAAAA
136530412 AGTTAAAATTTAATTGACCA
66 AGTTAAAATTTAATTGACCA
* *
136530432 CTAAAA-CTCACATACACAACCACTAAACCAAGTCAATTTACTTGATAATTTTTAACAATTCAAA
1 CTAAAACCTCACATACACAACCACTAAA-CAAGTAAATTTACTTGAAAATTTTTAACAATTCAAA
136530496 AAGTTAAAATTT
65 AAGTTAAAATTT
136530508 TGGGGCATTA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
80 15 0.22
81 7 0.10
82 2 0.03
84 2 0.03
85 41 0.61
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.31
Consensus pattern (85 bp):
CTAAAACCTCACATACACAACCACTAAACAAGTAAATTTACTTGAAAATTTTTAACAATTCAAAA
AGTTAAAATTTAATTGACCA
Found at i:136541199 original size:18 final size:18
Alignment explanation
Indices: 136541178--136541232 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
136541168 CAACAGTGAT
*
136541178 AATCGGTTAATCAGTAAC
1 AATCGTTTAATCAGTAAC
* * * *
136541196 AATCATTTATTCAATATC
1 AATCGTTTAATCAGTAAC
*
136541214 AATCGTTTAGTCAGTAAC
1 AATCGTTTAATCAGTAAC
136541232 A
1 A
136541233 GTCAATTATT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
AATCGTTTAATCAGTAAC
Found at i:136541394 original size:6 final size:6
Alignment explanation
Indices: 136541377--136541423 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
136541367 TACACTGTGT
* * * *
136541377 CAGTAA CGGTAA TAGTAA CAGTAA TAGTAA CAGTAA TAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
136541424 GCGGTACACA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (6 bp):
CAGTAA
Found at i:136541395 original size:12 final size:12
Alignment explanation
Indices: 136541378--136541423 Score: 83
Period size: 12 Copynumber: 3.8 Consensus size: 12
136541368 ACACTGTGTC
*
136541378 AGTAACGGTAAT
1 AGTAACAGTAAT
136541390 AGTAACAGTAAT
1 AGTAACAGTAAT
136541402 AGTAACAGTAAT
1 AGTAACAGTAAT
136541414 AGTAACAGTA
1 AGTAACAGTA
136541424 GCGGTACACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.20, T:0.24
Consensus pattern (12 bp):
AGTAACAGTAAT
Found at i:136554913 original size:18 final size:17
Alignment explanation
Indices: 136554855--136554980 Score: 53
Period size: 18 Copynumber: 7.1 Consensus size: 17
136554845 AATAAATTCG
*
136554855 TAAAAAATTTA-AAATA
1 TAAAAAATTTATAAAAA
* *
136554871 TATAAATTTTATAAAAAA
1 TAAAAAATTTAT-AAAAA
**
136554889 TCCAAAATTTATGAAAAA
1 TAAAAAATTTAT-AAAAA
*
136554907 TAAAAAATATT-TAAAAT
1 TAAAAAAT-TTATAAAAA
* *
136554924 TCAAGAAATTTTTTAAAAA
1 T-AA-AAAATTTATAAAAA
*
136554943 -AAAATCATTT-TAAAAA
1 TAAAA-AATTTATAAAAA
*
136554959 TTTTAAAAATTTATGAAAAA
1 --TAAAAAATTTAT-AAAAA
136554979 TA
1 TA
136554981 TAAAGGGTTC
Statistics
Matches: 81, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
16 17 0.21
17 10 0.12
18 34 0.42
19 15 0.19
20 5 0.06
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (17 bp):
TAAAAAATTTATAAAAA
Found at i:136554933 original size:36 final size:37
Alignment explanation
Indices: 136554892--136554980 Score: 96
Period size: 36 Copynumber: 2.5 Consensus size: 37
136554882 TAAAAAATCC
136554892 AAAATTTATGAAAAATAAAA-AATATTT-AAAA-TTCA
1 AAAATTTATGAAAAATAAAATAAT-TTTAAAAATTTCA
* * * *
136554927 AGAAATTTTTTAAAAA-AAAATCATTTTAAAAATTTTA
1 A-AAATTTATGAAAAATAAAATAATTTTAAAAATTTCA
136554964 AAAATTTATGAAAAATA
1 AAAATTTATGAAAAATA
136554981 TAAAGGGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
35 8 0.19
36 30 0.70
37 5 0.12
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (37 bp):
AAAATTTATGAAAAATAAAATAATTTTAAAAATTTCA
Found at i:136555117 original size:15 final size:15
Alignment explanation
Indices: 136555097--136555149 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
136555087 AAAAGTACTT
136555097 TTTAATTTTATTTAA
1 TTTAATTTTATTTAA
* *
136555112 TTTAATTATATTCAA
1 TTTAATTTTATTTAA
** *
136555127 AATATTTTTATTTAAA
1 TTTAATTTTATTT-AA
136555143 TTTAATT
1 TTTAATT
136555150 ATAAAGTATA
Statistics
Matches: 27, Mismatches: 10, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
15 21 0.78
16 6 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTAATTTTATTTAA
Found at i:136558162 original size:43 final size:43
Alignment explanation
Indices: 136558113--136558203 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
136558103 TCACACATGT
*
136558113 GGTTCACACTTAGGGGTTCGCACATA-AGGGTTTGC-TCAAGTAA
1 GGTTCACACATA-GGGTTCGCACATATAGGGTTTGCAT-AAGTAA
* * *
136558156 GGTTCACACATAGGGTTTGCACATATAGGTTTTGCATAAGTAG
1 GGTTCACACATAGGGTTCGCACATATAGGGTTTGCATAAGTAA
136558199 GGTTC
1 GGTTC
136558204 GCCTATAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 12 0.29
43 29 0.69
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GGTTCACACATAGGGTTCGCACATATAGGGTTTGCATAAGTAA
Found at i:136560015 original size:26 final size:26
Alignment explanation
Indices: 136559978--136560111 Score: 173
Period size: 26 Copynumber: 5.2 Consensus size: 26
136559968 TGATACAAAT
*
136559978 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
136560004 TGATATTGGGTTAGGTAAATTTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
136560030 TGATAATAGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
136560056 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
136560082 TGATAATGGGTTAGGT-AA-GTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
136560106 TGATAA
1 TGATAA
136560112 GAATATCATG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
24 12 0.13
25 2 0.02
26 80 0.85
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:136560035 original size:52 final size:52
Alignment explanation
Indices: 136559978--136560099 Score: 199
Period size: 52 Copynumber: 2.3 Consensus size: 52
136559968 TGATACAAAT
* * * *
136559978 TGATAATAGGTTAGGTAAATGTTCCATGATATTGGGTTAGGTAAATTTTTCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGGTTAAGTAAATGTTTCA
136560030 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGCTCCATGATAATGGGTTAAGTAAATGTTTCA
*
136560082 TGATAATGGGTTAGGTAA
1 TGATAATAGGTTAGGTAA
136560100 GTTTCATGAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGCTCCATGATAATGGGTTAAGTAAATGTTTCA
Found at i:136562953 original size:40 final size:40
Alignment explanation
Indices: 136562851--136563034 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
136562841 AAATTGAATG
* * * * *
136562851 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
136562891 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
136562931 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
136562971 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
136563011 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
136563035 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:136567530 original size:40 final size:40
Alignment explanation
Indices: 136567445--136567595 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
136567435 AATTGAATGA
* * * *
136567445 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
136567485 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
136567526 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
136567565 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
136567596 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:136567609 original size:40 final size:40
Alignment explanation
Indices: 136567482--136567611 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
136567472 ATGCTGGAAA
* * *
136567482 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
136567522 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
136567562 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
136567602 TTATATCCGG
1 TTATATCCGG
136567612 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:136567610 original size:80 final size:80
Alignment explanation
Indices: 136567444--136567611 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
136567434 AAATTGAATG
* *
136567444 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
136567509 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
136567524 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
136567587 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
136567604 ATATCCGG
1 ATATCCGG
136567612 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Done.