Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 444 of 770
Found at i:136575526 original size:40 final size:40
Alignment explanation
Indices: 136575460--136575609 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
136575450 AAATTGAATG
* *
136575460 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
136575499 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
136575539 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
136575579 CTATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
136575610 ACGTGGTTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 28 0.31
40 61 0.69
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:136575623 original size:39 final size:40
Alignment explanation
Indices: 136575497--136575625 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
136575487 ATGCTGGAAA
* * *
136575497 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
136575537 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
136575577 TTCTATCCGGGCTAAGA-CCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
136575616 TTATATCCGG
1 TTATATCCGG
136575626 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
38 1 0.01
39 25 0.35
40 45 0.63
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:136575624 original size:79 final size:79
Alignment explanation
Indices: 136575460--136575625 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 79
136575450 AAATTGAATG
*
136575460 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
136575525 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
136575539 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGA-CCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
136575601 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
136575618 ATATCCGG
1 ATATCCGG
136575626 TTATATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 44 0.59
80 29 0.39
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:136577321 original size:30 final size:29
Alignment explanation
Indices: 136577287--136577351 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
136577277 TATACTATAC
*
136577287 TAGTCCAT-ATATTTCATTTATTTTT-CATTT
1 TAGTCCATCA-ATTT-A-TTATTTTTGCAATT
*
136577317 TAGTCCTTCAATTTATTATTTTTGCAATT
1 TAGTCCATCAATTTATTATTTTTGCAATT
136577346 TAGTCC
1 TAGTCC
136577352 TAATAACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 11 0.35
31 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTGCAATT
Found at i:136579547 original size:43 final size:43
Alignment explanation
Indices: 136579486--136579601 Score: 214
Period size: 43 Copynumber: 2.7 Consensus size: 43
136579476 GTCATAGGCA
* *
136579486 TCGCATCCAAAATGAACTCTGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
136579529 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
136579572 TCGCATCCATAATGAACTCGGACCACTCAA
1 TCGCATCCATAATGAACTCGGACCACTCAA
136579602 AACGTTTAGA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.19
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
Found at i:136582481 original size:11 final size:10
Alignment explanation
Indices: 136582456--136582480 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
136582446 TGATGGAATC
136582456 AAAAATAGAA
1 AAAAATAGAA
136582466 AAAAATAGAA
1 AAAAATAGAA
136582476 AAAAA
1 AAAAA
136582481 AACTTAAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAATAGAA
Found at i:136585205 original size:25 final size:25
Alignment explanation
Indices: 136585176--136585225 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
136585166 CAAGTTATAA
136585176 CTAAAACATTTCACCACATTAGTTC
1 CTAAAACATTTCACCACATTAGTTC
136585201 CTAAAACATTTCACCACATTAGTTC
1 CTAAAACATTTCACCACATTAGTTC
136585226 AATTATAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.32
Consensus pattern (25 bp):
CTAAAACATTTCACCACATTAGTTC
Found at i:136586656 original size:39 final size:38
Alignment explanation
Indices: 136586631--136586771 Score: 187
Period size: 39 Copynumber: 3.7 Consensus size: 38
136586621 AATGCCTTCG
* * *
136586631 GGACTT-AGCCCGGATATTTTTCCAGCACT-TAGCCTAC
1 GGACTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTAC
136586668 GGACTTTAAGTCCGGATATATTTCCAGCATAAAGCCTAC
1 GGAC-TTAAGTCCGGATATATTTCCAGCATAAAGCCTAC
*
136586707 GGACTTCAAGTCCGGATATATTTCCAGCATAAAGCCTGC
1 GGACTT-AAGTCCGGATATATTTCCAGCATAAAGCCTAC
*
136586746 GGACTTCAAGTCCGGATATTTTTCCA
1 GGACTT-AAGTCCGGATATATTTCCA
136586772 ATACCATGCA
Statistics
Matches: 95, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
37 4 0.04
38 5 0.05
39 86 0.91
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (38 bp):
GGACTTAAGTCCGGATATATTTCCAGCATAAAGCCTAC
Found at i:136588960 original size:46 final size:45
Alignment explanation
Indices: 136588812--136588947 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 45
136588802 GCGTTCGCAC
* * * *
136588812 CCATAAGTGAACTCGGACTCAACTCAATGTGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA--T
* *** * *
136588858 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAT
136588905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCA
136588948 AATATCCTAG
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
44 5 0.07
46 32 0.45
47 30 0.42
49 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAT
Found at i:136592252 original size:143 final size:143
Alignment explanation
Indices: 136592043--136592340 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
136592033 GTGAGTTAAA
*
136592043 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
136592108 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
136592173 TGTGTGCATGAGT
131 TGTGTGCATGAGT
136592186 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
136592251 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
136592316 TGTGTGCATGAGT
131 TGTGTGCATGAGT
136592329 ATTCGGCCATGC
1 ATTCGGCCATGC
136592341 TATAGAATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
ATTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGTGCATGAGT
Found at i:136593017 original size:29 final size:29
Alignment explanation
Indices: 136592984--136593115 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
136592974 GTGACGAGAT
*
136592984 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
136593013 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
136593042 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
136593071 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
136593100 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
136593116 AGCTCGGAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:136600238 original size:143 final size:143
Alignment explanation
Indices: 136599980--136600273 Score: 579
Period size: 143 Copynumber: 2.1 Consensus size: 143
136599970 AGTTAAATTA
*
136599980 GGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
1 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
136600045 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
66 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
136600110 TGCATGAGTATTC
131 TGCATGAGTATTC
136600123 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
1 GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
136600188 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
66 TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
136600253 TGCATGAGTATTC
131 TGCATGAGTATTC
136600266 GGCCATGC
1 GGCCATGC
136600274 TATAGAATTT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 150 1.00
ACGTcount: A:0.21, C:0.10, G:0.30, T:0.39
Consensus pattern (143 bp):
GGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATGAG
TGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
TGCATGAGTATTC
Found at i:136600950 original size:29 final size:29
Alignment explanation
Indices: 136600917--136601048 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
136600907 GTGACGAGAT
*
136600917 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
136600946 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
136600975 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
136601004 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
136601033 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
136601049 AGCTCGAGGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:136602801 original size:40 final size:40
Alignment explanation
Indices: 136602741--136602895 Score: 197
Period size: 40 Copynumber: 3.9 Consensus size: 40
136602731 CGTTCAGACA
* * *
136602741 TACCGAAGTACAAGCAGGGGCATGTATGTGCAATCAGGGT
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGG
* *
136602781 TACCAAAGTACAAACAGGGGCGCGTAT-TGCAAAT-AGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGC-AATCAGGGG
* * *
136602820 TACCGAAGTAGAAACAGGGGCATGTATGTGGAATCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGG
* *
136602860 TACCGAAGTACAAACAGGGGCACATATTTGCAATCA
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATCA
136602896 TTTAATAATT
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.34
40 64 0.66
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.18
Consensus pattern (40 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGG
Found at i:136602877 original size:20 final size:20
Alignment explanation
Indices: 136602775--136602879 Score: 54
Period size: 20 Copynumber: 5.3 Consensus size: 20
136602765 TATGTGCAAT
* *
136602775 CAGGGTTACCAAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * *
136602795 CAGGGG--CGCGTATTGCAAA
1 CAGGGGTAC-CGAAGTACAAA
* *
136602814 TAGGGGTACCGAAGTAGAAA
1 CAGGGGTACCGAAGTACAAA
* * * ** *
136602834 CAGGGGCA-TGTATGTGGAAT
1 CAGGGGTACCG-AAGTACAAA
136602854 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
136602874 CAGGGG
1 CAGGGG
136602880 CACATATTTG
Statistics
Matches: 58, Mismatches: 22, Indels: 10
0.64 0.24 0.11
Matches are distributed among these distances:
18 1 0.02
19 13 0.22
20 42 0.72
21 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.34, T:0.15
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:136603707 original size:10 final size:10
Alignment explanation
Indices: 136603692--136603716 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
136603682 ATTTAAGCTA
136603692 ATTACCATCC
1 ATTACCATCC
136603702 ATTACCATCC
1 ATTACCATCC
136603712 ATTAC
1 ATTAC
136603717 ATATTTAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (10 bp):
ATTACCATCC
Found at i:136608539 original size:29 final size:29
Alignment explanation
Indices: 136608500--136608587 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
136608490 CAAAGATAAC
*
136608500 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
136608529 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
136608558 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
136608588 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:136608558 original size:15 final size:15
Alignment explanation
Indices: 136608500--136608578 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
136608490 CAAAGATAAC
*
136608500 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
136608514 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
136608529 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
136608543 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
136608558 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
136608573 AAGAAA
1 AAGAAA
136608579 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:136608587 original size:15 final size:15
Alignment explanation
Indices: 136608511--136608587 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
136608501 AGAAAACCGA
136608511 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
136608526 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
136608540 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
136608554 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
136608570 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
136608585 ATA
1 ATA
136608588 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:136611592 original size:92 final size:93
Alignment explanation
Indices: 136611481--136611650 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
136611471 GCCCATAAGT
* *
136611481 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
136611546 CGAG-TCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
* *
136611573 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
136611638 CGAGTTCGGATGC
66 CGAGTTCGGATGC
136611651 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 65 0.89
93 8 0.11
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:136611647 original size:46 final size:46
Alignment explanation
Indices: 136611473--136611647 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
136611463 TGTAACCCGC
* * * *
136611473 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
136611519 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
136611568 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
136611611 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
136611648 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
45 4 0.04
46 83 0.75
47 5 0.05
48 1 0.01
49 6 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:136611666 original size:46 final size:46
Alignment explanation
Indices: 136611478--136611666 Score: 137
Period size: 46 Copynumber: 4.1 Consensus size: 46
136611468 CCCGCCCATA
* ** * *
136611478 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
136611523 AAGTGAACTCGGACTCAACTCAACGAG-TCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * *
136611572 --CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCCT
136611616 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
136611662 AGTGA
1 AGTGA
136611667 CATGTCACTT
Statistics
Matches: 114, Mismatches: 11, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
44 9 0.08
45 6 0.05
46 82 0.72
47 7 0.06
49 8 0.07
50 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:136613077 original size:19 final size:19
Alignment explanation
Indices: 136613053--136613089 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
136613043 TCACCGATAG
*
136613053 TGTTTTATTGCAAGAGGGT
1 TGTTTTAATGCAAGAGGGT
136613072 TGTTTTAATGCAAGAGGG
1 TGTTTTAATGCAAGAGGG
136613090 AAAAGTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.32, T:0.38
Consensus pattern (19 bp):
TGTTTTAATGCAAGAGGGT
Found at i:136617311 original size:40 final size:40
Alignment explanation
Indices: 136617263--136617474 Score: 320
Period size: 40 Copynumber: 5.3 Consensus size: 40
136617253 CTTCGGGGTT
* *
136617263 TTAG-CCGGATATAG-CAACTTGCACAAATGCCTTCGGGCC
1 TTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTCGGGAC
* * * *
136617302 TTAGCCCGGATATAGTCCATAGAACAAAAGCCTTCGAGAC
1 TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
* *
136617342 TTAGCCCGGATATAGTCACTAACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
*
136617382 TTAGCCCGGATATAGTCAATAGCACAAATGCATTCGGGAC
1 TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
136617422 TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
136617462 TTAGCCCGGATAT
1 TTAGCCCGGATAT
136617475 CATTCGAATA
Statistics
Matches: 155, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 4 0.03
40 149 0.96
41 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGAC
Found at i:136626231 original size:40 final size:40
Alignment explanation
Indices: 136626172--136626313 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
136626162 AAATTGAATG
* *
136626172 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
136626212 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
136626252 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
136626292 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
136626314 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:136626314 original size:40 final size:39
Alignment explanation
Indices: 136626211--136626339 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
136626201 TGCTGGAAAT
* * *
136626211 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
136626251 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
136626291 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
136626331 TATATCCGG
1 TATATCCGG
136626340 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:136634103 original size:16 final size:16
Alignment explanation
Indices: 136634082--136634118 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
136634072 GTAGATTGGT
136634082 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
*
136634098 AAAAGTCGAAATGTCG
1 AAAAGTCGAAATGCCG
136634114 AAAAG
1 AAAAG
136634119 CCAAAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.14, G:0.24, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:136634403 original size:57 final size:55
Alignment explanation
Indices: 136634336--136634467 Score: 140
Period size: 57 Copynumber: 2.3 Consensus size: 55
136634326 GTGAGCATGA
* *
136634336 ATATAATGTGATTTGGGCAGGATGGGCCGTATAAA-TGAGATTGGGCCTAATGGGCC
1 ATATAATGTGA-TTGGGCAGGATGGGCCATATAAACTGA-ATTGGGCCCAATGGGCC
** * *
136634392 ATATGAATGTGAATTGGGCCTGATGGGTCATATAAACGTGAATTGGGCCCGATGGGCC
1 ATAT-AATGTG-ATTGGGCAGGATGGGCCATATAAAC-TGAATTGGGCCCAATGGGCC
*
136634450 ATATAAATGAGATTGGGC
1 ATAT-AATGTGATTGGGC
136634468 CTAGCTGGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
56 4 0.06
57 32 0.50
58 25 0.39
59 3 0.05
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.27
Consensus pattern (55 bp):
ATATAATGTGATTGGGCAGGATGGGCCATATAAACTGAATTGGGCCCAATGGGCC
Found at i:136634417 original size:29 final size:29
Alignment explanation
Indices: 136634336--136634469 Score: 148
Period size: 29 Copynumber: 4.7 Consensus size: 29
136634326 GTGAGCATGA
* **
136634336 ATAT-AATGTGATTTGGGCAGGATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* * *
136634364 GTATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* *
136634392 ATATGAATGTGAATTGGGCCTGATGGGTC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
* *
136634421 ATATAAACGTGAATTGGGCCCGATGGGCC
1 ATATAAATGTGAATTGGGCCTGATGGGCC
*
136634450 ATATAAATGAG-ATTGGGCCT
1 ATATAAATGTGAATTGGGCCT
136634470 AGCTGGCCAT
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
28 32 0.37
29 54 0.63
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGAATTGGGCCTGATGGGCC
Found at i:136643896 original size:29 final size:29
Alignment explanation
Indices: 136643857--136643935 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
136643847 CTTAATAATC
*
136643857 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
136643887 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
136643916 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
136643936 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:136644593 original size:2 final size:2
Alignment explanation
Indices: 136644575--136644610 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
136644565 TGATGGCCGA
* *
136644575 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
136644611 CAACTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:136652013 original size:29 final size:29
Alignment explanation
Indices: 136651974--136652052 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
136651964 CTTAATAATC
*
136651974 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
136652004 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
136652033 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
136652053 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:136662463 original size:40 final size:40
Alignment explanation
Indices: 136662355--136662524 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
136662345 CGGGATTTAA
* * * * *
136662355 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
136662395 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136662435 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136662475 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136662515 CCGGATATAT
1 CCGGATATAT
136662525 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:136670560 original size:40 final size:40
Alignment explanation
Indices: 136670452--136670621 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
136670442 CGGGATTTAA
* * * * *
136670452 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
136670492 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136670532 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136670572 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136670612 CCGGATATAT
1 CCGGATATAT
136670622 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:136678255 original size:29 final size:29
Alignment explanation
Indices: 136678209--136678286 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
136678199 CTTAATAATC
*
136678209 AACCACGCACA-TTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
136678238 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
136678267 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
136678287 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 9 0.21
29 34 0.79
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:136678943 original size:2 final size:2
Alignment explanation
Indices: 136678925--136678960 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
136678915 TGATGGCCGA
* *
136678925 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
136678961 CAACTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:136691648 original size:47 final size:49
Alignment explanation
Indices: 136691531--136691705 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 49
136691521 AACCCGCCCC
* * *
136691531 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
*
136691577 TAA-TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
136691624 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
136691669 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
136691706 TCAACCATCC
Statistics
Matches: 110, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 30 0.27
46 32 0.29
47 32 0.29
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:136691705 original size:93 final size:92
Alignment explanation
Indices: 136691536--136691705 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
136691526 GCCCCTAAGT
* *
136691536 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAAC
136691601 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
136691628 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAA-TGAACTCGGACTCAACTCAA
136691693 CGAGTTCGGATGC
65 CGAGTTCGGATGC
136691706 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 40 0.55
93 33 0.45
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:136699193 original size:93 final size:93
Alignment explanation
Indices: 136699083--136699253 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
136699073 GCCCCTAAGT
* *
136699083 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
136699148 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
136699176 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
136699241 CGAGTTCGGATGC
66 CGAGTTCGGATGC
136699254 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:136699250 original size:46 final size:46
Alignment explanation
Indices: 136699078--136699250 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
136699068 AACCCGCCCC
* * * *
136699078 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
136699124 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
136699172 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
136699217 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
136699251 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:136711400 original size:54 final size:53
Alignment explanation
Indices: 136711196--136711400 Score: 148
Period size: 54 Copynumber: 3.8 Consensus size: 53
136711186 TTCTTTTTAA
* * * * *
136711196 ACTTACCATTACCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTGTAG
* * * * * *
136711248 AACTCACCATTGTCATGCCTTGGCATGGTCTTA-TATGGGAT-CTTTCCTTATTGTAG
1 -ACTTACCAATGCCATGCCTTGACATGGTCTTACT-TGGTATCCTTGCC---TTGTAG
* * * * * * *
136711304 -TTTATCAAAGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAG
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTGT-AG
* *
136711357 ACTTACCAATGCCATGCCTTGGCATGGTCTTACTTAGTATCCTT
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
136711401 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 31, Indels: 17
0.70 0.19 0.11
Matches are distributed among these distances:
52 9 0.08
53 34 0.30
54 60 0.54
55 8 0.07
56 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
ACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTGTAG
Found at i:136718977 original size:43 final size:43
Alignment explanation
Indices: 136718929--136719096 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
136718919 TATCGAGATG
* * *
136718929 TGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTATTT
1 TGATTACATGTAAGACCATATCTAGGATATTGGCATTGTATTA
** * * * *
136718972 TGATTATGTGTAAGACCATGTCTAGGACATTGTCATCGTATTA
1 TGATTACATGTAAGACCATATCTAGGATATTGGCATTGTATTA
*** * ** *
136719015 TGATTTTGTGTAAGATCC-TATCTAGGATAGTGGCA-TCAATATG
1 TGATTACATGTAAGA-CCATATCTAGGATATTGGCATTGTAT-TA
* **
136719058 TGATAACATGTAAGACCATATCCGGGATA-TGGCATTGTA
1 TGATTACATGTAAGACCATATCTAGGATATTGGCATTGTA
136719097 CGAGCTTATG
Statistics
Matches: 97, Mismatches: 24, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
42 9 0.09
43 86 0.89
44 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (43 bp):
TGATTACATGTAAGACCATATCTAGGATATTGGCATTGTATTA
Found at i:136721249 original size:40 final size:40
Alignment explanation
Indices: 136721205--136721314 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
136721195 TTCACAATTT
* *
136721205 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
136721245 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
136721285 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
136721315 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:136729141 original size:40 final size:40
Alignment explanation
Indices: 136729097--136729206 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
136729087 TTCACAATTT
* *
136729097 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
136729137 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
136729177 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
136729207 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:136732906 original size:34 final size:34
Alignment explanation
Indices: 136732868--136732935 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
136732858 TTCTGAGTTG
136732868 AACTCTTCTACCACTTCCTTTTTTAGAGACAAAC
1 AACTCTTCTACCACTTCCTTTTTTAGAGACAAAC
136732902 AACTCTTCTACCACTTCCTTTTTTAGAGACAAAC
1 AACTCTTCTACCACTTCCTTTTTTAGAGACAAAC
136732936 TCTCTTTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35
Consensus pattern (34 bp):
AACTCTTCTACCACTTCCTTTTTTAGAGACAAAC
Found at i:136734114 original size:42 final size:42
Alignment explanation
Indices: 136734051--136734165 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 42
136734041 ACTTTTTTTC
** * * *
136734051 TCGATGACATAGTTCAACTATGGTCTTATACATCTTCACATA-A
1 TCGATGACATAGCCCAGCTATGGTCTTACACAT-ATC-CATATA
136734094 T-GATGACATAGCCCAGCTATGGTCTTACACATATCCATATA
1 TCGATGACATAGCCCAGCTATGGTCTTACACATATCCATATA
*
136734135 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGACATAGCCCAGCTATGGTCTTACAC
136734166 GAATCACATA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 4 0.06
41 4 0.06
42 55 0.86
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGACATAGCCCAGCTATGGTCTTACACATATCCATATA
Found at i:136734239 original size:47 final size:48
Alignment explanation
Indices: 136734134--136734259 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 48
136734124 ATATCCATAT
* * * *
136734134 ATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
*
136734182 -T-GATGCCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC
136734227 ATCGATGCCATATCCCAGATATGGTCTTATACG
1 ATCGATGCCATATCCCAGATATGGTCTTATACG
136734260 GAAATCACTT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.16
46 27 0.39
47 30 0.43
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
Found at i:136734320 original size:31 final size:31
Alignment explanation
Indices: 136734285--136734463 Score: 229
Period size: 31 Copynumber: 5.8 Consensus size: 31
136734275 TTGTCACTTG
*
136734285 TAGCCGAAGCTACCACTATTCACTGATCAGA
1 TAGCCGAAGCTACCACTTTTCACTGATCAGA
* * *
136734316 TAGCCGGAGCTACCATTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGA
*
136734347 TAGCCGGAGCTACCACTTTTCACTGATCA-A
1 TAGCCGAAGCTACCACTTTTCACTGATCAGA
136734377 GTAGCCGGAA-CTACCACTTTTCACTGATCA-A
1 -TAGCC-GAAGCTACCACTTTTCACTGATCAGA
* *
136734408 GTAGCTGAAGCTACCACTTTTCACTGATCAGG
1 -TAGCCGAAGCTACCACTTTTCACTGATCAGA
* *
136734440 TAGCTGAAGCTACCACATTTCACT
1 TAGCCGAAGCTACCACTTTTCACT
136734464 TGTCATTTAT
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
30 3 0.02
31 129 0.96
32 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGA
Found at i:136734382 original size:62 final size:62
Alignment explanation
Indices: 136734284--136734463 Score: 254
Period size: 62 Copynumber: 2.9 Consensus size: 62
136734274 CTTGTCACTT
* * *
136734284 GTAGCCGAAGCTACCACTATTCACTGATC-AGATAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAG-TAGCCGGAGCTACCACTTTTCACTGATCAA
* *
136734346 GTAGCCGGAGCTACCACTTTTCACTGATCAAGTAGCCGGAACTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCGGAGCTACCACTTTTCACTGATCAA
* * * * *
136734408 GTAGCTGAAGCTACCACTTTTCACTGATCAGGTAGCTGAAGCTACCACATTTCACT
1 GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCGGAGCTACCACTTTTCACT
136734464 TGTCATTTAT
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
62 103 0.98
63 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAAGTAGCCGGAGCTACCACTTTTCACTGATCAA
Found at i:136734443 original size:93 final size:93
Alignment explanation
Indices: 136734284--136734463 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
136734274 CTTGTCACTT
* *
136734284 GTAGCCGAAGCTACCACTATTCACTGATCAGATAGCCGGAGCTACCATTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTATTCACTGATCAGATAGCCGAAGCTACCACTTTTCACTGATCAGGTA
* *
136734349 GCCGGAGCTACCACTTTTCACTGATCAA
66 GCCGAAGCTACCACATTTCACTGATCAA
* *
136734377 GTAGCCGGAA-CTACCACTTTTCACTGATCA-AGTAGCTGAAGCTACCACTTTTCACTGATCAGG
1 GTAGCC-GAAGCTACCACTATTCACTGATCAGA-TAGCCGAAGCTACCACTTTTCACTGATCAGG
*
136734440 TAGCTGAAGCTACCACATTTCACT
64 TAGCCGAAGCTACCACATTTCACT
136734464 TGTCATTTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
92 1 0.01
93 74 0.95
94 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGATAGCCGAAGCTACCACTTTTCACTGATCAGGTA
GCCGAAGCTACCACATTTCACTGATCAA
Found at i:136734543 original size:50 final size:51
Alignment explanation
Indices: 136734439--136734567 Score: 174
Period size: 50 Copynumber: 2.5 Consensus size: 51
136734429 CACTGATCAG
* *
136734439 GTAGCTGAAGCTACCACATT-TCACTTGTCATTTATCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCAC-TTATCACTTGTCATTTATCATTGATCAGATAAGT
*
136734490 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTATCATTGATCAGATAAGT
* *
136734540 GTAGCCGAAGTTATCGCTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
136734568 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
50 45 0.64
51 25 0.36
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTATCATTGATCAGATAAGT
Found at i:136740960 original size:40 final size:40
Alignment explanation
Indices: 136740894--136741037 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
136740884 AAATTGAATG
* * *
136740894 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
136740933 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
136740973 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
136741013 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
136741038 TTCGTGCACT
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:136749056 original size:40 final size:40
Alignment explanation
Indices: 136748929--136749058 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
136748919 ATGCTGGAAA
* *
136748929 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
136748969 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
136749009 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
136749049 TTATATCCGG
1 TTATATCCGG
136749059 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:136759993 original size:43 final size:43
Alignment explanation
Indices: 136759945--136760100 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 43
136759935 GATTACATGT
* *
136759945 AAGACCATGTCTGGGACATTGGCATTG-TATTGTGGTTAT-GTGC
1 AAGACCATGTCTGGGACATTGGCATTGTTA-TATGATT-TCGTGC
* *
136759988 AAGACCATGTCTAGGACATTGGCATCGTTATATGATTTCGTGC
1 AAGACCATGTCTGGGACATTGGCATTGTTATATGATTTCGTGC
* * ** * ** * *
136760031 AAGACCTTGTCTGGGACAGTGGCATTAATATGTGATAACATGT
1 AAGACCATGTCTGGGACATTGGCATTGTTATATGATTTCGTGC
* *
136760074 AAGACCATATCTGGGATA-TGGCATTGT
1 AAGACCATGTCTGGGACATTGGCATTGT
136760101 ATGAGCTTTA
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 8 0.09
43 81 0.89
44 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATTGTTATATGATTTCGTGC
Found at i:136766279 original size:40 final size:40
Alignment explanation
Indices: 136766234--136766401 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
136766224 CGGAATATAA
136766234 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
136766274 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
136766314 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
136766354 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
136766394 CCGGATAT
1 CCGGATAT
136766402 CATTCAATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 108 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:136779931 original size:42 final size:42
Alignment explanation
Indices: 136779885--136780033 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 42
136779875 TGAGTTTACG
* * *
136779885 TGTAAGACCATATCTGGGATACGACATCGTTATGAGATTTGA
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGATTCGA
* * * * *
136779927 TGTAAGACCATGTCTAGGACATGGCATCGATATGAGAATCG-
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGATTCGA
* * * * * * *
136779968 TGTAAGACCATAGCTGGGCTATTGCCATCAATATAAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAGATTCGA
136780011 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
136780034 GCATTGGTAT
Statistics
Matches: 84, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
41 16 0.19
42 49 0.58
43 19 0.23
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGATTCGA
Found at i:136780140 original size:27 final size:27
Alignment explanation
Indices: 136780110--136780169 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
136780100 GTAATTTAAA
136780110 GATTATGTCAAAGATGTGAAAGGTTAT
1 GATTATGTCAAAGATGTGAAAGGTTAT
136780137 GATTATGTCAAAGATGTGAAAGGTTAT
1 GATTATGTCAAAGATGTGAAAGGTTAT
136780164 GATTAT
1 GATTAT
136780170 CTTATGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (27 bp):
GATTATGTCAAAGATGTGAAAGGTTAT
Found at i:136783254 original size:43 final size:43
Alignment explanation
Indices: 136783100--136783254 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 43
136783090 CAATGTCATA
* * * ** * *
136783100 TCCCAGATATGGTCTTACATGTTATCACATATTGATACCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATAGCGATGCCAATG
* * * * * *
136783143 TCCCAGACAGGGTTTTACACGAAATCATATAGCGATGTCAGTG
1 TCCCAGACATGGTCTTACACGTAATCACATAGCGATGCCAATG
* * *
136783186 TCCCAGACATGGTTTTACACATAATCACAATA-CAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCAC-ATAGCGATGCCAATG
*
136783229 TCCCAGACATGGTCTTACATGTAATC
1 TCCCAGACATGGTCTTACACGTAATC
136783255 TTAGTAATCC
Statistics
Matches: 89, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
43 86 0.97
44 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATAGCGATGCCAATG
Found at i:136789225 original size:29 final size:29
Alignment explanation
Indices: 136789192--136789288 Score: 171
Period size: 29 Copynumber: 3.4 Consensus size: 29
136789182 ACGAGATTGC
136789192 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGG
*
136789221 CACTAAGTGTGCGTGCTGG-AA-ATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGG
136789248 CACTAAGTGTGCATGCTGGAAATATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGG
136789277 CACTAAGTGTGC
1 CACTAAGTGTGC
136789289 GAGCTCGAAG
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
27 24 0.38
28 4 0.06
29 36 0.56
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAATATATGG
Found at i:136789259 original size:56 final size:57
Alignment explanation
Indices: 136789192--136789348 Score: 201
Period size: 56 Copynumber: 2.8 Consensus size: 57
136789182 ACGAGATTGC
* *
136789192 CACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA-ATATGG
1 CACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGATATGG
*
136789248 CACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGGGTATGG
1 CACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA-GATATGG
* ** * **
136789306 CACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 CACTAAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
136789349 AATCGAGTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
56 48 0.54
57 4 0.04
58 37 0.42
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (57 bp):
CACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGATATGG
Found at i:136789304 original size:29 final size:27
Alignment explanation
Indices: 136789192--136789348 Score: 140
Period size: 29 Copynumber: 5.5 Consensus size: 27
136789182 ACGAGATTGC
136789192 CACTAAGTGTGC-ATGCTGGAAATATATGG
1 CACTAAGTGTGCGA-GCTGG-AA-ATATGG
*
136789221 CACTAAGTGTGCGTGCTGGAAATATGG
1 CACTAAGTGTGCGAGCTGGAAATATGG
136789248 CACTAAGTGTGC-ATGCTGGAAATATATGG
1 CACTAAGTGTGCGA-GCTGG-AA-ATATGG
* *
136789277 CACTAAGTGTGCGAGCTCGAAGGGTATGG
1 CACTAAGTGTGCGAGCTGGAA--ATATGG
* * *
136789306 CACTATGTGTGCGGGCT-TAAATCGCATGG
1 CACTAAGTGTGCGAGCTGGAAAT---ATGG
136789335 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
136789349 AATCGAGTAT
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
26 1 0.01
27 23 0.21
28 8 0.07
29 75 0.69
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTGGAAATATGG
Found at i:136801291 original size:39 final size:40
Alignment explanation
Indices: 136801191--136801372 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
136801181 TCGAATGATG
* * *
136801191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
136801231 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
136801271 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
136801309 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
136801350 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
136801373 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:136801336 original size:78 final size:80
Alignment explanation
Indices: 136801191--136801372 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
136801181 TCGAATGATG
* * * *
136801191 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
136801256 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
136801271 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
136801333 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
136801350 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
136801373 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:136809320 original size:39 final size:40
Alignment explanation
Indices: 136809220--136809401 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
136809210 TCGAATGATG
* * *
136809220 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
136809260 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
136809300 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
136809338 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
136809379 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
136809402 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:136809365 original size:78 final size:80
Alignment explanation
Indices: 136809220--136809401 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
136809210 TCGAATGATG
* * * *
136809220 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
136809285 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
136809300 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
136809362 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
136809379 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
136809402 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:136813013 original size:17 final size:17
Alignment explanation
Indices: 136812984--136813026 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
136812974 CTTTTTATGA
136812984 AAAATTGTAAATTAGCAT
1 AAAATT-TAAATTAGCAT
*
136813002 AAAATTTAAATTAGTAT
1 AAAATTTAAATTAGCAT
136813019 AAAATTTA
1 AAAATTTA
136813027 GTAATAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.75
18 6 0.25
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.37
Consensus pattern (17 bp):
AAAATTTAAATTAGCAT
Found at i:136814134 original size:16 final size:16
Alignment explanation
Indices: 136814109--136814143 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
136814099 AATAAAATTT
*
136814109 TTTGAGTTTTTATACA
1 TTTGAATTTTTATACA
*
136814125 TTTGAATTTTTATATA
1 TTTGAATTTTTATACA
136814141 TTT
1 TTT
136814144 TTATAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.63
Consensus pattern (16 bp):
TTTGAATTTTTATACA
Found at i:136814145 original size:10 final size:9
Alignment explanation
Indices: 136814129--136814187 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 9
136814119 TATACATTTG
136814129 AATTTTTAT
1 AATTTTTAT
136814138 ATATTTTTAT
1 A-ATTTTTAT
136814148 AATTTTTAAT
1 AATTTTT-AT
*
136814158 AATTGTTAAT
1 AATT-TTTAT
136814168 AAATTATTTTAT
1 -AA-T-TTTTAT
136814180 AATTTTTA
1 AATTTTTA
136814188 ATTTTTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
9 12 0.29
10 18 0.43
11 6 0.14
12 5 0.12
13 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (9 bp):
AATTTTTAT
Found at i:136814354 original size:4 final size:4
Alignment explanation
Indices: 136814345--136814369 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
136814335 AATTCAAAAT
136814345 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
136814370 ATGAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:136814488 original size:21 final size:21
Alignment explanation
Indices: 136814462--136814501 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
136814452 TTCAATTATT
**
136814462 TAATTTAAATCAATTAAATAA
1 TAATTTAAAGAAATTAAATAA
136814483 TAATTTAAAGAAATTAAAT
1 TAATTTAAAGAAATTAAAT
136814502 TAATCTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TAATTTAAAGAAATTAAATAA
Found at i:136818457 original size:17 final size:17
Alignment explanation
Indices: 136818423--136818458 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
136818413 TCATTTGGTA
**
136818423 TTTGAATTTGACTTTTT
1 TTTGAATTTGACACTTT
136818440 TTTGAATTTGACACTTT
1 TTTGAATTTGACACTTT
136818457 TT
1 TT
136818459 CTAATGTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTGAATTTGACACTTT
Found at i:136820452 original size:498 final size:498
Alignment explanation
Indices: 136819515--136820511 Score: 1958
Period size: 498 Copynumber: 2.0 Consensus size: 498
136819505 TTTGTCGAAA
136819515 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
1 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
*
136819580 TAGAATTAGGTAAATTAGAAACGAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
66 TAGAATTAGGTAAATTAGAAACAAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
136819645 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
131 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
136819710 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
196 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
136819775 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
261 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
136819840 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
326 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
136819905 TCAGGCTCAATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
391 TCAGGCTCAATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
136819970 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
456 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
136820013 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
1 TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
136820078 TAGAATTAGGTAAATTAGAAACAAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
66 TAGAATTAGGTAAATTAGAAACAAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
*
136820143 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTACCCTAA
131 GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
136820208 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
196 AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
136820273 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
261 AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
*
136820338 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAGCCAAACAATAACAATG
326 ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
*
136820403 TCAGGCTCGATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
391 TCAGGCTCAATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
136820468 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
456 ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
136820511 T
1 T
136820512 TAGTCTTGCT
Statistics
Matches: 495, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
498 495 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30
Consensus pattern (498 bp):
TCCTTGAATTAATGAAGTAAAAGTGTTCTGATTCACCAATAATGGAAAGCCTGAATGTTGAATTG
TAGAATTAGGTAAATTAGAAACAAAAATTTTAAGAAAATACCTAGAGTACAAAAAGTTCATTGTA
GTTTTCTAAGAGAAAAATGAAATTTCTTTAGAAAAATTAAAACCTTAAACTGAGAATTAACCTAA
AAACTTTTTACTCCCTTAAAATACTTATAAAGTAGTACTTATATTTTAGCTAAACTTAACCTAAC
AATGACATTTTTTCCATCCATTATAAACTCATTTAAGGCAAGGTTGACCAAAGTGACTATAGATT
ACCCTTTAATGTTAGGCTCGATGTCGCGACCCACAAGTTGATGTCACAACCAAACAATAACAATG
TCAGGCTCAATGTCGTTACCCACAAGTTGATGTCACGACATCAACAATAATCTAGTCCATCGACC
ACTTGATGTTGCGACCATAGAGGTTGATGTCACAACCTTACAC
Found at i:136822105 original size:46 final size:46
Alignment explanation
Indices: 136822037--136822219 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
136822027 TATATATACA
* * * *
136822037 CATCTCATACATATATCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
136822083 CATCTCATACACGTTTCGCATTAACCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
136822129 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
136822175 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
136822220 ATACACTTCT
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:136822264 original size:47 final size:47
Alignment explanation
Indices: 136822193--136822524 Score: 486
Period size: 47 Copynumber: 7.1 Consensus size: 47
136822183 ACACATTTCG
* * * * * **
136822193 CATTAGCCATTCGGCTTTACCACATATATACA-CTTCTATGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTC-ACATTCATCA
*
136822240 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
136822287 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
136822334 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
136822381 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
136822428 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
136822475 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
136822522 CAT
1 CAT
136822525 AAAATCCTAA
Statistics
Matches: 264, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 261 0.99
48 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:136822311 original size:22 final size:22
Alignment explanation
Indices: 136822283--136822357 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
136822273 GTTCACATTC
136822283 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
136822305 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
136822329 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
136822352 ATCACA
1 ATCACA
136822358 CATATGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:136827701 original size:19 final size:19
Alignment explanation
Indices: 136827677--136827716 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
136827667 TGTGTCATCA
136827677 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
**
136827696 TAAATTTGTAGGCATAACT
1 TAAATTCATAGGCATAACT
136827715 TA
1 TA
136827717 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:136830770 original size:93 final size:93
Alignment explanation
Indices: 136830658--136830828 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
136830648 GCCCATAAGT
* *
136830658 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
136830723 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
136830751 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
136830816 CGAGTTCGGATGC
66 CGAGTTCGGATGC
136830829 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:136830844 original size:46 final size:46
Alignment explanation
Indices: 136830650--136830830 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
136830640 TGTAACCCGC
* * *
136830650 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
136830696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
136830746 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
136830789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
136830831 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:136832827 original size:15 final size:15
Alignment explanation
Indices: 136832809--136832837 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
136832799 CTTAGTTCTA
136832809 TTAGTTGTATTTAAC
1 TTAGTTGTATTTAAC
136832824 TTAGTTGTATTTAA
1 TTAGTTGTATTTAA
136832838 TTTTTACAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.55
Consensus pattern (15 bp):
TTAGTTGTATTTAAC
Found at i:136837260 original size:31 final size:31
Alignment explanation
Indices: 136837222--136837300 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
136837212 CAGCATATAT
*
136837222 TGGGCCGAAGCCTTTACATTATTCATGTCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
* *
136837253 TGGGCCGAAGCCTTTTCATTATTCATATTAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
136837284 TGGGCCGAAGCCTTTAC
1 TGGGCCGAAGCCTTTAC
136837301 TATAAATGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTACATTATTCATATCAC
Found at i:136837546 original size:25 final size:24
Alignment explanation
Indices: 136837518--136837612 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 24
136837508 CTCTTTTAAT
136837518 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTG-TA
136837543 AACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTT-TGTA
*
136837568 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTT-TGTA
136837593 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
136837613 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
25 66 0.97
26 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTTGTA
Found at i:136837572 original size:50 final size:50
Alignment explanation
Indices: 136837518--136837612 Score: 172
Period size: 50 Copynumber: 1.9 Consensus size: 50
136837508 CTCTTTTAAT
*
136837518 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCTGTA
1 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
*
136837568 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTT
136837613 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAGCCCTTTTCTGTA
Found at i:136837676 original size:11 final size:11
Alignment explanation
Indices: 136837660--136837728 Score: 58
Period size: 11 Copynumber: 6.7 Consensus size: 11
136837650 TATATGAATT
136837660 TATCATGTGCA
1 TATCATGTGCA
*
136837671 TATCA--TACA
1 TATCATGTGCA
*
136837680 TATAATGTGCA
1 TATCATGTGCA
*
136837691 TATCA--TACA
1 TATCATGTGCA
136837700 TATCATGTGCA
1 TATCATGTGCA
*
136837711 CATCATGT-CA
1 TATCATGTGCA
*
136837721 AATCATGT
1 TATCATGT
136837729 ATATCAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
9 15 0.33
10 9 0.20
11 22 0.48
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:136837689 original size:20 final size:20
Alignment explanation
Indices: 136837664--136837716 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
136837654 TGAATTTATC
136837664 ATGTGCATATCATACATATA
1 ATGTGCATATCATACATATA
*
136837684 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATA
*
136837704 ATGTGCACATCAT
1 ATGTGCATATCAT
136837717 GTCAAATCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATA
Found at i:136839866 original size:26 final size:26
Alignment explanation
Indices: 136839830--136839882 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
136839820 ATGCTATTTC
136839830 TACCTTACCCAAGCCTAGCCGAACAT
1 TACCTTACCCAAGCCTAGCCGAACAT
136839856 TACCTTACCCAAGCCTAGCCGAACAT
1 TACCTTACCCAAGCCTAGCCGAACAT
136839882 T
1 T
136839883 TTTCCCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.38, G:0.11, T:0.21
Consensus pattern (26 bp):
TACCTTACCCAAGCCTAGCCGAACAT
Found at i:136841579 original size:16 final size:16
Alignment explanation
Indices: 136841558--136841593 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
136841548 AATGTGTACT
136841558 TGTAACACCCCTTACC
1 TGTAACACCCCTTACC
*
136841574 TGTAACACCCCTTGCC
1 TGTAACACCCCTTACC
136841590 TGTA
1 TGTA
136841594 TCTAACTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.39, G:0.11, T:0.28
Consensus pattern (16 bp):
TGTAACACCCCTTACC
Found at i:136855506 original size:27 final size:27
Alignment explanation
Indices: 136855473--136855857 Score: 194
Period size: 27 Copynumber: 14.3 Consensus size: 27
136855463 CCTCAAATTG
*
136855473 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* *
136855500 TAGAATTACC-ATTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* ***
136855526 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * ** *
136855553 CAAAATTACTATTTTACCCTTGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * ****
136855580 CAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * * *
136855607 TAAAACTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * *
136855634 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * *
136855660 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAATTACCCTCGATTTA
* * * * *
136855687 TAAAATTGCTAAAATACCC-CTAGTTTG
1 TAAAATTACCAAATTACCCTCGA-TTTA
* *
136855714 TAAAATTACCGAAA-TACCCTCAATTTG
1 TAAAATTACC-AAATTACCCTCGATTTA
* * *
136855741 TAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAATTACCCTC-GATTTA
* * *
136855768 TAAAATTACCAAAATACCACT-GGTTTG
1 TAAAATTACCAAATTACC-CTCGATTTA
* * * *
136855795 TGAAATTATCGAAA-TACCCTCAATTTG
1 TAAAATTA-CCAAATTACCCTCGATTTA
*
136855822 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACCAAATTACCCTC-GATTTA
* *
136855849 CAAAGTTAC
1 TAAAATTAC
136855858 AGAAATACCC
Statistics
Matches: 291, Mismatches: 52, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
26 54 0.19
27 227 0.78
28 10 0.03
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TAAAATTACCAAATTACCCTCGATTTA
Found at i:136855652 original size:54 final size:54
Alignment explanation
Indices: 136855474--136855924 Score: 241
Period size: 54 Copynumber: 8.4 Consensus size: 54
136855464 CTCAAATTGT
* * ** * * *
136855474 AAAATTACCAAAGTACCCTCGATTTATAGAATTACC-ATTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC
* **** * * *** *
136855527 AGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC
* ***** * *
136855581 AGAATTACTGTTTTACCCTCGATTTATAAAACTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC
* * * **
136855635 AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCTTGGTTTAC
* * * * * *** **
136855688 AAAATTGCTAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTGGTTTAC
* * **
136855742 AAAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTATAAAATTACCAAAATACC-CTTGGTTTAC
* * * * * * *
136855796 GAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC
* * * *** *
136855850 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTAC
1 AAAATTACCA-AAATACCCTCGA-TTTAT-AAAATTACCAAAATACCCTTGGTTTAC
**
136855906 AAAATTACTGAAATACCCT
1 AAAATTACCAAAATACCCT
136855925 TAGTTTGTAG
Statistics
Matches: 317, Mismatches: 68, Indels: 23
0.78 0.17 0.06
Matches are distributed among these distances:
52 2 0.01
53 70 0.22
54 202 0.64
55 7 0.02
56 36 0.11
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC
Found at i:136855679 original size:81 final size:81
Alignment explanation
Indices: 136855596--136855870 Score: 315
Period size: 81 Copynumber: 3.4 Consensus size: 81
136855586 TACTGTTTTA
* ** * * **
136855596 CCCTCGATTTATAAAACTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAG
1 CCCT-GATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTG
136855661 TAAAATTACCAAAATA-
65 TAAAATTACCAAAATAC
* * * * *
136855677 CCCT-AGTCTGTAAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCGAAATACCCTCAATTTG
1 CCCTGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTG
136855741 TAAAATTACCAAAATAC
65 TAAAATTACCAAAATAC
* * * * *
136855758 CCCTAATTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTATCGAAATACCCTCAATTTG
1 CCCTGATTTATAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTG
136855822 TAAAATTACCAAAATAC
65 TAAAATTACCAAAATAC
* *
136855839 CCCTGATTTACAAAGTTAC-AGAAATACCCTTG
1 CCCTGATTTATAAAATTACTA-AAATACCCTTG
136855871 ACTTTCTAAA
Statistics
Matches: 166, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 64 0.39
81 99 0.60
82 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
CCCTGATTTATAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
AAAATTACCAAAATAC
Found at i:136856014 original size:27 final size:27
Alignment explanation
Indices: 136855984--136856075 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
136855974 ACCCCTATTA
*
136855984 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
136856011 GGTAAAGTGACCGTGAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
136856038 GTTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
136856065 GGTAAAATGAC
1 GGTAAAATGAC
136856076 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:136856805 original size:20 final size:20
Alignment explanation
Indices: 136856774--136856850 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
136856764 ATACGTGGGA
*
136856774 TATGATATGCACATGATATG
1 TATGAAATGCACATGATATG
*
136856794 TATAAAATGCACATGATATG
1 TATGAAATGCACATGATATG
136856814 TATGAAATGCACATGATATG
1 TATGAAATGCACATGATATG
*
136856834 TATGAAATCCACATGAT
1 TATGAAATGCACATGAT
136856851 GTATTCATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (20 bp):
TATGAAATGCACATGATATG
Found at i:136856957 original size:24 final size:26
Alignment explanation
Indices: 136856899--136856957 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
136856889 GAGGAAGTGC
136856899 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
136856925 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
136856948 AAAAGAGGCT
1 AAAAG-GGCT
136856958 AGGCCTCCAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.16
24 9 0.28
25 8 0.25
26 10 0.31
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:136856967 original size:25 final size:25
Alignment explanation
Indices: 136856899--136856967 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
136856889 GAGGAAGTGC
*
136856899 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGC-TAGGCCCCAGTTTATTG
**
136856925 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTAGGCCCCAGTTTATTG
136856948 AAAAGAGGCTAGGCCTCCAG
1 AAAAG-GGCTAGGCC-CCAG
136856968 ATATATGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 5 0.13
24 12 0.32
25 13 0.34
26 8 0.21
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTAGGCCCCAGTTTATTG
Found at i:136857165 original size:42 final size:42
Alignment explanation
Indices: 136857097--136857179 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
136857087 CTAAATAGGC
* ** *
136857097 TTGCATACATTCATTGGTATTTCATGTGATATTGAAATGGGT
1 TTGCATACATCCATTGACATTACATGTGATATTGAAATGGGT
136857139 TTGCATACATCCATTGACATTACATGTGATATTGAAATGGG
1 TTGCATACATCCATTGACATTACATGTGATATTGAAATGGG
136857180 CCTAAGGGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (42 bp):
TTGCATACATCCATTGACATTACATGTGATATTGAAATGGGT
Found at i:136860093 original size:27 final size:28
Alignment explanation
Indices: 136860037--136860106 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
136860027 AAATTTGTAC
136860037 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
136860065 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
136860092 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
136860107 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:136860117 original size:27 final size:27
Alignment explanation
Indices: 136860037--136860118 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
136860027 AAATTTGTAC
* *
136860037 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
136860065 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
136860092 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
136860119 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:136867899 original size:27 final size:28
Alignment explanation
Indices: 136867843--136867912 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
136867833 AAATTTGTAC
136867843 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
136867871 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
136867898 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
136867913 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:136867923 original size:27 final size:27
Alignment explanation
Indices: 136867843--136867924 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
136867833 AAATTTGTAC
* *
136867843 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
136867871 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
136867898 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
136867925 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:136877792 original size:27 final size:27
Alignment explanation
Indices: 136877754--136877814 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
136877744 CTATTGTAAG
*
136877754 TTAGTTTCTTATTATGAAGTTATGACT
1 TTAGTTTCTTATTAAGAAGTTATGACT
136877781 TTAGTTTCTTATTAAGAAGTTATGACT
1 TTAGTTTCTTATTAAGAAGTTATGACT
*
136877808 TTTGTTT
1 TTAGTTT
136877815 TGATAAATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.54
Consensus pattern (27 bp):
TTAGTTTCTTATTAAGAAGTTATGACT
Found at i:136881323 original size:22 final size:22
Alignment explanation
Indices: 136881297--136881338 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
136881287 TGCATATGCG
*
136881297 AACCTCTTCCATGCATTGTGCA
1 AACCTCATCCATGCATTGTGCA
* *
136881319 AACCTCATCTATGCGTTGTG
1 AACCTCATCCATGCATTGTG
136881339 TGAACTCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (22 bp):
AACCTCATCCATGCATTGTGCA
Found at i:136882289 original size:14 final size:15
Alignment explanation
Indices: 136882260--136882300 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
136882250 CCTACGTGTA
136882260 GAACTGTTTATATGC
1 GAACTGTTTATATGC
136882275 GAACTGTTT-TATGC
1 GAACTGTTTATATGC
* *
136882289 GATCTGTCTATA
1 GAACTGTTTATA
136882301 AGTGAGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (15 bp):
GAACTGTTTATATGC
Found at i:136882883 original size:2 final size:2
Alignment explanation
Indices: 136882876--136882901 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
136882866 CAGTTTACTC
136882876 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
136882902 GTATTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:136899919 original size:31 final size:31
Alignment explanation
Indices: 136899876--136899939 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
136899866 CCTTTTCATA
136899876 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
136899907 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
136899938 TT
1 TT
136899940 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:136900182 original size:24 final size:24
Alignment explanation
Indices: 136900146--136900273 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
136900136 CTGGAGGCCT
*
136900146 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
136900171 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
136900195 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
136900218 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
136900242 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
136900265 AGCCCTTTT
1 AGCCCTTTT
136900274 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
23 45 0.46
24 49 0.50
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:136900207 original size:23 final size:23
Alignment explanation
Indices: 136900153--136900272 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
136900143 CCTAGCCTCT
*
136900153 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
136900176 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
136900200 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
136900223 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
136900247 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
136900270 TTT
1 TTT
136900273 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:136900274 original size:47 final size:47
Alignment explanation
Indices: 136900153--136900274 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
136900143 CCTAGCCTCT
* *
136900153 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
136900200 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
136900247 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
136900275 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:136900347 original size:20 final size:20
Alignment explanation
Indices: 136900319--136900389 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
136900309 GCATTTATGA
*
136900319 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136900339 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136900359 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136900379 ACATACCATGT
1 ACATATCATGT
136900390 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:136900354 original size:11 final size:11
Alignment explanation
Indices: 136900324--136900378 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
136900314 TATGAACATC
136900324 TCATGTGCATA
1 TCATGTGCATA
*
136900335 TCA--TACATA
1 TCATGTGCATA
136900344 TCATGTGCATA
1 TCATGTGCATA
* *
136900355 TCA--TACATG
1 TCATGTGCATA
136900364 TCATGTGCATA
1 TCATGTGCATA
136900375 TCAT
1 TCAT
136900379 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:136908231 original size:23 final size:24
Alignment explanation
Indices: 136908182--136908307 Score: 89
Period size: 23 Copynumber: 5.0 Consensus size: 24
136908172 GCTTTATCAT
**
136908182 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTCTTTTA
136908207 ATAACTGGGGCAAAGCC-CTTTTA
1 ATAACTGGGGCAAAGCCTCTTTTA
* *
136908230 ATAACTGGGGCATAAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCA-AA--GC-----CTCTTTTA
136908262 ATAACTGGGGCATAAGCC-C-TTTA
1 ATAACTGGGGCA-AAGCCTCTTTTA
136908285 ATAACTGGGGCATAAGCC-CTTTT
1 ATAACTGGGGCA-AAGCCTCTTTT
136908308 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 21
0.78 0.04 0.19
Matches are distributed among these distances:
23 40 0.46
24 13 0.15
25 9 0.10
26 2 0.02
30 2 0.02
31 1 0.01
32 20 0.23
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTCTTTTA
Found at i:136908255 original size:32 final size:31
Alignment explanation
Indices: 136908214--136908277 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 31
136908204 TTAATAACTG
136908214 GGGCAAAGCCCTTTTAATAACTGGGGCATAA
1 GGGCAAAGCCCTTTTAATAACTGGGGCATAA
*
136908245 GGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 GGGCA-AAGCCCTTTTAATAACTGGGGCATAA
136908277 G
1 G
136908278 CCCTTTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 5 0.16
32 26 0.84
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (31 bp):
GGGCAAAGCCCTTTTAATAACTGGGGCATAA
Found at i:136908267 original size:55 final size:56
Alignment explanation
Indices: 136908196--136908300 Score: 178
Period size: 55 Copynumber: 1.9 Consensus size: 56
136908186 CTGGAGGCCT
136908196 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGGGCATA
1 AGCCTCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGGGCATA
*
136908252 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAG
1 AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAG
136908301 CCCTTTTGCA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
55 37 0.79
56 10 0.21
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (56 bp):
AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGGGCATA
Found at i:136908272 original size:24 final size:24
Alignment explanation
Indices: 136908245--136908308 Score: 112
Period size: 23 Copynumber: 2.7 Consensus size: 24
136908235 TGGGGCATAA
136908245 GGGCATAAGCCCTTTTGATAACTG
1 GGGCATAAGCCCTTTTGATAACTG
*
136908269 GGGCATAAGCCC-TTTAATAACTG
1 GGGCATAAGCCCTTTTGATAACTG
136908292 GGGCATAAGCCCTTTTG
1 GGGCATAAGCCCTTTTG
136908309 CACTTCCTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 22 0.59
24 15 0.41
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (24 bp):
GGGCATAAGCCCTTTTGATAACTG
Found at i:136908381 original size:20 final size:20
Alignment explanation
Indices: 136908353--136908422 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
136908343 GCATTTATGA
*
136908353 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136908373 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
136908393 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
136908413 ACATA-CATGT
1 ACATATCATGT
136908423 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 5 0.11
20 42 0.89
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:136908388 original size:11 final size:11
Alignment explanation
Indices: 136908358--136908412 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
136908348 TATGAACATC
136908358 TCATGTGCATA
1 TCATGTGCATA
*
136908369 TCA--TACATA
1 TCATGTGCATA
136908378 TCATGTGCATA
1 TCATGTGCATA
* *
136908389 TCA--TACATG
1 TCATGTGCATA
136908398 TCATGTGCATA
1 TCATGTGCATA
136908409 TCAT
1 TCAT
136908413 ACATACATGT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:136908487 original size:25 final size:25
Alignment explanation
Indices: 136908459--136908506 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
136908449 ATATATAAAC
* * *
136908459 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
136908484 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
136908507 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:136913371 original size:14 final size:14
Alignment explanation
Indices: 136913352--136913380 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
136913342 ACAGATGGAT
136913352 TCGTATAATTCTTA
1 TCGTATAATTCTTA
136913366 TCGTATAATTCTTA
1 TCGTATAATTCTTA
136913380 T
1 T
136913381 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:136917613 original size:20 final size:21
Alignment explanation
Indices: 136917547--136917615 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
136917537 TCACTTCGTT
136917547 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
136917568 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
136917589 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
136917610 -CTTTTT
1 TCTTTTT
136917616 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:136920014 original size:18 final size:18
Alignment explanation
Indices: 136919981--136920074 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
136919971 AAGGTTTTCT
136919981 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
136919996 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
136920014 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
136920032 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
136920050 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
136920068 TATTGAT
1 TATTGAT
136920075 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:136928342 original size:14 final size:14
Alignment explanation
Indices: 136928323--136928350 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
136928313 TATATTAGTA
136928323 TTTTCTATTCTATT
1 TTTTCTATTCTATT
136928337 TTTTCTATTCTATT
1 TTTTCTATTCTATT
136928351 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:136928358 original size:6 final size:6
Alignment explanation
Indices: 136928347--136928425 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
136928337 TTTTCTATTC
* *
136928347 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
136928394 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
136928426 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Done.