Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 445 of 770
Found at i:136928373 original size:11 final size:11
Alignment explanation
Indices: 136928348--136928429 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
136928338 TTTCTATTCT
136928348 ATTAGTATTAG
1 ATTAGTATTAG
136928359 ---AGTATTAG
1 ATTAGTATTAG
**
136928367 ATTAGTATTCT
1 ATTAGTATTAG
*
136928378 ATT-CTATTAG
1 ATTAGTATTAG
136928388 TATTAG-ATTAG
1 -ATTAGTATTAG
136928399 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
136928414 ATTAGTATTAG
1 ATTAGTATTAG
136928425 -TTAGT
1 ATTAGT
136928430 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:136928414 original size:20 final size:21
Alignment explanation
Indices: 136928384--136928429 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
136928374 TTCTATTCTA
136928384 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
136928405 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
136928425 TTAGT
1 TTAGT
136928430 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:136936642 original size:32 final size:32
Alignment explanation
Indices: 136936601--136936662 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
136936591 CATCTATTTT
136936601 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
136936633 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
136936663 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:136943971 original size:13 final size:13
Alignment explanation
Indices: 136943953--136943980 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
136943943 TGAAAATTCG
136943953 TTAATGGTACATT
1 TTAATGGTACATT
136943966 TTAATGGTACATT
1 TTAATGGTACATT
136943979 TT
1 TT
136943981 CCCCTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (13 bp):
TTAATGGTACATT
Found at i:136953901 original size:21 final size:21
Alignment explanation
Indices: 136953877--136953920 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
136953867 GAATCTTTAG
*
136953877 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
136953898 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
136953919 TA
1 TA
136953921 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:136956177 original size:22 final size:22
Alignment explanation
Indices: 136956150--136956193 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
136956140 CTCTCGATTT
136956150 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
136956172 TTTTATTGCTCCTTTTCAATCA
1 TTTTATTGCTCCTTTTCAATCA
136956194 AAAGAGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTATTGCTCCTTTTCAATCA
Found at i:136960346 original size:32 final size:32
Alignment explanation
Indices: 136960310--136960371 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
136960300 AGCTTTTGGT
136960310 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
136960342 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
136960372 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:136970841 original size:40 final size:40
Alignment explanation
Indices: 136970733--136970942 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
136970723 CGGGATTTAA
* * * * *
136970733 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
136970773 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136970813 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136970853 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136970893 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136970933 CCGGATATAT
1 CCGGATATAT
136970943 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:136978975 original size:40 final size:40
Alignment explanation
Indices: 136978867--136979036 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
136978857 CGGGATTTAA
* * * * *
136978867 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
136978907 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136978947 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136978987 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
136979027 CCGGATATAT
1 CCGGATATAT
136979037 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:136981569 original size:15 final size:15
Alignment explanation
Indices: 136981549--136981577 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
136981539 AAGACTCAAC
136981549 AACCGGCTTTTCATA
1 AACCGGCTTTTCATA
136981564 AACCGGCTTTTCAT
1 AACCGGCTTTTCAT
136981578 TCAACCGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (15 bp):
AACCGGCTTTTCATA
Found at i:136993712 original size:32 final size:32
Alignment explanation
Indices: 136993670--136993738 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
136993660 GGACACGGCT
* *
136993670 GTGTGCCACGCCCATGTGAAGGTCCTCAGGTC
1 GTGTGACACGCCCATGTGAAGGTCCTCAGGCC
*
136993702 GTGTGACACGCCCATGTGAAGGTGCTCAGGCC
1 GTGTGACACGCCCATGTGAAGGTCCTCAGGCC
136993734 GTGTG
1 GTGTG
136993739 TAATTCTGGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.22
Consensus pattern (32 bp):
GTGTGACACGCCCATGTGAAGGTCCTCAGGCC
Found at i:136995850 original size:24 final size:23
Alignment explanation
Indices: 136995812--136995862 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
136995802 GTTTTTGAAG
* *
136995812 AAAATGATAAATAAAGACAAAAT
1 AAAATGAAAAATAAAAACAAAAT
*
136995835 AAAATGAAAAAATAAAAATAAAAT
1 AAAATG-AAAAATAAAAACAAAAT
136995859 AAAA
1 AAAA
136995863 AAGAAAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (23 bp):
AAAATGAAAAATAAAAACAAAAT
Found at i:136995854 original size:19 final size:18
Alignment explanation
Indices: 136995818--136995869 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 18
136995808 GAAGAAAATG
136995818 ATAAATAAAGACAAAATAAA
1 ATAAA-AAAGA-AAAATAAA
*
136995838 ATGAAAAAATAAAAATAAA
1 AT-AAAAAAGAAAAATAAA
136995857 ATAAAAAAGAAAA
1 ATAAAAAAGAAAA
136995870 CAAATTGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 10 0.34
19 10 0.34
20 6 0.21
21 3 0.10
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (18 bp):
ATAAAAAAGAAAAATAAA
Found at i:136995869 original size:24 final size:24
Alignment explanation
Indices: 136995820--136995869 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
136995810 AGAAAATGAT
* *
136995820 AAATAAAGACAAAATAAAATGAAA
1 AAATAAAAACAAAATAAAAAGAAA
*
136995844 AAATAAAAATAAAATAAAAAAGAAA
1 AAATAAAAACAAAAT-AAAAAGAAA
136995869 A
1 A
136995870 CAAATTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (24 bp):
AAATAAAAACAAAATAAAAAGAAA
Found at i:136999721 original size:47 final size:47
Alignment explanation
Indices: 136999652--136999856 Score: 320
Period size: 47 Copynumber: 4.4 Consensus size: 47
136999642 CCCTTCGGGA
* * * *
136999652 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
136999699 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
136999746 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
136999793 CTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
136999840 TTTATCACATATATACA
1 CTTATCACATATATACA
136999857 TATCACACAT
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 144 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:136999906 original size:48 final size:48
Alignment explanation
Indices: 136999830--137000013 Score: 323
Period size: 48 Copynumber: 3.8 Consensus size: 48
136999820 CATCACATGG
* *
136999830 GCCATTAGGCTTTATCACATATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTA-C-CACATATACATATCACACATATATTTCACATTA
136999880 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
*
136999928 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
136999976 GCCATTCGGCTTTACCACATATACATATCACACATATA
1 GCCATTCGGCTTTACCACATATACATATCACACATATA
137000014 CTTATTTATC
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 117 0.89
49 1 0.01
50 13 0.10
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.33
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
Found at i:136999911 original size:94 final size:97
Alignment explanation
Indices: 136999681--137000007 Score: 340
Period size: 94 Copynumber: 3.4 Consensus size: 97
136999671 TTCACATCCA
* * * *
136999681 TCACATTGGCCACTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
* *
136999746 CTTATCACATATATACACT-T-TCACAT-TCA--
66 TTTATCACATATATACA-TATCACACATAT-ATT
* * * *
136999775 TCACATTGGCCATTCGGCCTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
136999840 TTTATCACATATATACATATCACACATATATT
66 TTTATCACATATATACATATCACACATATATT
* **
136999872 TCACATTAGCCATTCGGCTTTA-C-CACATATACA-TATCACACATAT-ATTTCACATTAGCCAT
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTAT--CACAT-TCA--TCACATCGGCCAT
* *
136999933 TCGGCTTTA-C-CACATATACATATCACACATATATT
61 TAGGCTTTATCACATATATACATATCACACATATATT
* *
136999968 TCACATCAGCCATTCGGCTTTA-C-CACATATACA-TATCACA
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACA
137000008 CATATACTTA
Statistics
Matches: 208, Mismatches: 15, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
93 1 0.00
94 84 0.40
95 15 0.07
96 67 0.32
97 22 0.11
98 19 0.09
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (97 bp):
TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
TTTATCACATATATACATATCACACATATATT
Found at i:136999911 original size:141 final size:141
Alignment explanation
Indices: 136999652--136999911 Score: 305
Period size: 141 Copynumber: 1.8 Consensus size: 141
136999642 CCCTTCGGGA
** * *
136999652 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATGGGCCACTAGGCCTTATCACATATATACAC
* * * *
136999717 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
66 TTACACATTCATCACATCAGCCATTAGGCCTTATCACACATATACACTATCACATTCATCACATT
136999782 GGCCATTCGGC
131 GGCCATTCGGC
* * * *
136999793 CTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGCTTTATCACATATATACA-
1 CTTATCACACATATACACTTTCACATCCATCACATGGGCCACTAGGCCTTATCACATATATACAC
* * *
136999857 TATCACACATAT-ATTTCACATTAGCCATTCGGCTTTA-C-CACATATACA-TATCACA
66 T-T-ACACAT-TCA--TCACATCAGCCATTAGGCCTTATCACACATATACACTATCACA
136999912 CATATATTTC
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
140 1 0.01
141 63 0.64
142 15 0.15
143 2 0.02
144 18 0.18
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACACATATACACTTTCACATCCATCACATGGGCCACTAGGCCTTATCACATATATACAC
TTACACATTCATCACATCAGCCATTAGGCCTTATCACACATATACACTATCACATTCATCACATT
GGCCATTCGGC
Found at i:137003235 original size:40 final size:40
Alignment explanation
Indices: 137003178--137003459 Score: 447
Period size: 40 Copynumber: 7.0 Consensus size: 40
137003168 CGAATACACG
* * *** **
137003178 TCACCAGCATGATTGCTCTTCGGGGTTTAGCATGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
* * * *
137003218 TCACTAGCACGAATGCTCTTCGGAACTTAGCTCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
137003258 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
*
137003298 TCACTAGCATGAATGCTCTTCGGGACCTATCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
137003338 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
137003378 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
*
137003418 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
137003458 TC
1 TC
137003460 GTCGAGACCT
Statistics
Matches: 227, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 227 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATACA
Found at i:137003555 original size:38 final size:38
Alignment explanation
Indices: 137003513--137003587 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
137003503 AAATTTTAAT
*
137003513 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
137003551 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
137003588 AACTTGAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:137006591 original size:28 final size:28
Alignment explanation
Indices: 137006526--137006597 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
137006516 ATAGTGAATC
* *
137006526 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
137006555 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
137006583 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
137006598 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:137014091 original size:28 final size:28
Alignment explanation
Indices: 137014026--137014097 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
137014016 ATAGTGAATC
* *
137014026 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
137014055 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
137014083 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
137014098 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:137016709 original size:47 final size:47
Alignment explanation
Indices: 137016640--137016844 Score: 295
Period size: 47 Copynumber: 4.4 Consensus size: 47
137016630 CCCTTCGGGA
* * * *
137016640 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
137016687 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
137016733 CTTAATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTT-ATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
137016781 CTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
137016828 TTTATCACATATATACA
1 CTTATCACATATATACA
137016845 TATCACACAT
Statistics
Matches: 140, Mismatches: 16, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
46 3 0.02
47 134 0.96
48 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:137016809 original size:94 final size:94
Alignment explanation
Indices: 137016643--137016844 Score: 332
Period size: 94 Copynumber: 2.1 Consensus size: 94
137016633 TTCGGGACTT
* *
137016643 ATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACACATATACACTTT
*
137016708 CATATTCATCACATCGGCCATTAGGCTTA
66 CACATTCATCACATCGGCCATTAGGCTTA
* * *
137016737 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCACTTT
1 ATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACACATATACACTTT
* *
137016802 CACATTCATCACATGGGCCATTAGGCTTT
66 CACATTCATCACATCGGCCATTAGGCTTA
137016831 ATCACATATATACA
1 ATCACATATATACA
137016845 TATCACACAT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 100 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
ATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACACATATACACTTT
CACATTCATCACATCGGCCATTAGGCTTA
Found at i:137016894 original size:48 final size:48
Alignment explanation
Indices: 137016818--137017001 Score: 323
Period size: 48 Copynumber: 3.8 Consensus size: 48
137016808 CATCACATGG
* *
137016818 GCCATTAGGCTTTATCACATATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTA-C-CACATATACATATCACACATATATTTCACATTA
137016868 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
*
137016916 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATCA
1 GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
137016964 GCCATTCGGCTTTACCACATATACATATCACACATATA
1 GCCATTCGGCTTTACCACATATACATATCACACATATA
137017002 CTTATTTATC
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
48 117 0.89
49 1 0.01
50 13 0.10
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.33
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTA
Found at i:137016899 original size:94 final size:97
Alignment explanation
Indices: 137016669--137016995 Score: 331
Period size: 94 Copynumber: 3.4 Consensus size: 97
137016659 TTCACATCCA
* * * * *
137016669 TCACATTGGCCACTCGGCCTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
* *
137016734 TTAATCACATATATACACT-T-TCACAT-TCA--
66 TTTATCACATATATACA-TATCACACATAT-ATT
* * * *
137016763 TCACATTGGCCATTCGGCCTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
137016828 TTTATCACATATATACATATCACACATATATT
66 TTTATCACATATATACATATCACACATATATT
* **
137016860 TCACATTAGCCATTCGGCTTTA-C-CACATATACA-TATCACACATAT-ATTTCACATTAGCCAT
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTAT--CACAT-TCA--TCACATCGGCCAT
* *
137016921 TCGGCTTTA-C-CACATATACATATCACACATATATT
61 TAGGCTTTATCACATATATACATATCACACATATATT
* *
137016956 TCACATCAGCCATTCGGCTTTA-C-CACATATACA-TATCACA
1 TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACA
137016996 CATATACTTA
Statistics
Matches: 207, Mismatches: 16, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
93 1 0.00
94 83 0.40
95 15 0.07
96 67 0.32
97 22 0.11
98 19 0.09
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.32
Consensus pattern (97 bp):
TCACATTAGCCATTCGGCCTTATCACACATATACACTATCACATTCATCACATCGGCCATTAGGC
TTTATCACATATATACATATCACACATATATT
Found at i:137023465 original size:41 final size:41
Alignment explanation
Indices: 137023420--137023537 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
137023410 TGAAAGATAA
137023420 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
137023461 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
137023491 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
137023532 ATGTAG
1 ATGTAG
137023538 ACAAGAAGCT
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:137023476 original size:71 final size:71
Alignment explanation
Indices: 137023388--137023548 Score: 315
Period size: 71 Copynumber: 2.3 Consensus size: 71
137023378 GAGATGTATC
137023388 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
137023453 AGGACA
66 AGGACA
137023459 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
137023524 AGGACA
66 AGGACA
137023530 CCATGTAGACAAGA-AGCTA
1 CCATGTAGACAAGAGAGCTA
137023549 TGAGACAAAT
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 5 0.06
71 85 0.94
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:137028473 original size:30 final size:29
Alignment explanation
Indices: 137028409--137028515 Score: 198
Period size: 30 Copynumber: 3.7 Consensus size: 29
137028399 TGTGAGTTTG
137028409 TATATAGCACTAAGTGTGCGAGCTG-AAA
1 TATATAGCACTAAGTGTGCGAGCTGAAAA
137028437 TATATAGCACTAAGTGTGCGAGCTGAAAA
1 TATATAGCACTAAGTGTGCGAGCTGAAAA
137028466 TTATATAGCACTAAGTGTGCGAGCTGAAAA
1 -TATATAGCACTAAGTGTGCGAGCTGAAAA
137028496 TATATAGCACTAAGTGTGCG
1 TATATAGCACTAAGTGTGCG
137028516 GATTCACTAT
Statistics
Matches: 77, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
28 25 0.32
29 23 0.30
30 29 0.38
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
TATATAGCACTAAGTGTGCGAGCTGAAAA
Found at i:137036422 original size:29 final size:29
Alignment explanation
Indices: 137036303--137036410 Score: 207
Period size: 29 Copynumber: 3.7 Consensus size: 29
137036293 TGAGTTTGAT
137036303 TATATAGCACTAAGTGTGCGAGCTGAAAA
1 TATATAGCACTAAGTGTGCGAGCTGAAAA
137036332 TATATAGCACTAAGTGTGCGAGCTGAAAA
1 TATATAGCACTAAGTGTGCGAGCTGAAAA
137036361 TTATATAGCACTAAGTGTGCGAGCTGAAAA
1 -TATATAGCACTAAGTGTGCGAGCTGAAAA
137036391 TATATAGCACTAAGTGTGCG
1 TATATAGCACTAAGTGTGCG
137036411 GATTCACTAT
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
29 49 0.63
30 29 0.37
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
TATATAGCACTAAGTGTGCGAGCTGAAAA
Found at i:137041743 original size:39 final size:39
Alignment explanation
Indices: 137041700--137041781 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
137041690 AATTATGTTA
137041700 CCAGCAC-AAGGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAA-GCCTACGGGACTTTAGCCCGGATACATTT
* *
137041739 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
137041778 CCAG
1 CCAG
137041782 TGTCTTGCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 38 0.95
40 2 0.05
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:137042376 original size:27 final size:27
Alignment explanation
Indices: 137042328--137042468 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
137042318 GGGGCAAAAT
* * * *
137042328 GGTAATTTTACCCCACGAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
137042355 AGTAATTCTACCCTATAGGGGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
137042381 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
137042408 GGTAATTCTACCCTACAAGGATATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
137042435 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
137042462 GATAATT
1 GGTAATT
137042469 TCACAAATCA
Statistics
Matches: 94, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
26 20 0.21
27 74 0.79
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:137042402 original size:53 final size:54
Alignment explanation
Indices: 137042332--137042458 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 54
137042322 CAAAATGGTA
* * * * *
137042332 ATTT-TACCCCACGAGGGTATCTCAGTAATTCTACCCTATAGGGGTA-TTCGAT
1 ATTTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGATATTTCGAT
* * * *
137042384 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATATTTTGGT
1 ATTTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGATATTTCGAT
*
137042438 AATTCTACCCTACAAGGGTAT
1 ATTTCTACCCTACAAGGGTAT
137042459 TTCGATAATT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 4 0.06
53 35 0.56
54 24 0.38
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAAGGATATTTCGAT
Found at i:137042484 original size:54 final size:54
Alignment explanation
Indices: 137042386--137042495 Score: 152
Period size: 54 Copynumber: 2.0 Consensus size: 54
137042376 TATTCGATAT
* **
137042386 TTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGATATTTTGGTAA
1 TTCTACCCTACAAGGGTATTTCGATAATTCTACAATACAAGGATATTTTGGTAA
*
137042440 TTCTACCCTACAAGGGTATTTCGATAATT-TCACAA-ATCAGGGATATTTTGGTAA
1 TTCTACCCTACAAGGGTATTTCGATAATTCT-ACAATA-CAAGGATATTTTGGTAA
137042494 TT
1 TT
137042496 TTGTAAACCA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (54 bp):
TTCTACCCTACAAGGGTATTTCGATAATTCTACAATACAAGGATATTTTGGTAA
Found at i:137049395 original size:12 final size:12
Alignment explanation
Indices: 137049387--137049439 Score: 74
Period size: 12 Copynumber: 4.5 Consensus size: 12
137049377 TTGAAATGAA
137049387 AATAAAAATCAA-
1 AATAAAAAT-AAG
*
137049399 AAGAAAAATAAG
1 AATAAAAATAAG
137049411 AAT-AAAATAAG
1 AATAAAAATAAG
137049422 AATAAAAATAAG
1 AATAAAAATAAG
137049434 AATAAA
1 AATAAA
137049440 TAAAAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 13 0.35
12 24 0.65
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (12 bp):
AATAAAAATAAG
Found at i:137049417 original size:11 final size:11
Alignment explanation
Indices: 137049403--137049452 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
137049393 AATCAAAAGA
137049403 AAAATAAGAAT
1 AAAATAAGAAT
137049414 AAAATAAGAAT
1 AAAATAAGAAT
137049425 AAAAATAAGAAT
1 -AAAATAAGAAT
*
137049437 -AAATAAAAAT
1 AAAATAAGAAT
137049447 AAAATA
1 AAAATA
137049453 GGAGGATTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 9 0.25
11 16 0.44
12 11 0.31
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (11 bp):
AAAATAAGAAT
Found at i:137049428 original size:23 final size:22
Alignment explanation
Indices: 137049392--137049450 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 22
137049382 ATGAAAATAA
* *
137049392 AAATCAAAAGAAAAATAAGAAT
1 AAATAAAAATAAAAATAAGAAT
*
137049414 AAAATAAGAATAAAAATAAGAAT
1 -AAATAAAAATAAAAATAAGAAT
137049437 AAATAAAAATAAAA
1 AAATAAAAATAAAA
137049451 TAGGAGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAGAAT
Found at i:137049446 original size:6 final size:6
Alignment explanation
Indices: 137049380--137049450 Score: 67
Period size: 6 Copynumber: 12.3 Consensus size: 6
137049370 AAGAAAATTG
* * * * *
137049380 AAATGA AAATAA AAATCA AAAGAA AAATAA GAAT-A AAATAA GAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
137049427 AAATAA GAAT-- AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
137049451 TAGGAGGATT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
4 3 0.06
5 4 0.08
6 44 0.86
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:137052532 original size:38 final size:38
Alignment explanation
Indices: 137052476--137052664 Score: 270
Period size: 38 Copynumber: 4.9 Consensus size: 38
137052466 CACTCGATAC
* * *
137052476 ATATCCGGGTTAAGTCCCGCAGGCTTCGTACTGGCAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
137052514 ATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
137052552 ATATCCGGGTTAAATCCCGCAGGTTTCGTGCTGGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* *
137052590 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
137052628 ATATCCGGGCTTAAAGTTCCGTAGGCTTTGTGCTGGT
1 ATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGT
137052665 GACTGGATTC
Statistics
Matches: 137, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 114 0.83
39 5 0.04
40 18 0.13
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:137052902 original size:30 final size:30
Alignment explanation
Indices: 137052868--137052928 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
137052858 GATTACTATA
137052868 TTTACGAATAAGAGAATGACCTATTCGGTC
1 TTTACGAATAAGAGAATGACCTATTCGGTC
137052898 TTTACGAATAAGAGAATGACCTATTCGGTC
1 TTTACGAATAAGAGAATGACCTATTCGGTC
137052928 T
1 T
137052929 ATGTCTGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (30 bp):
TTTACGAATAAGAGAATGACCTATTCGGTC
Found at i:137054967 original size:46 final size:46
Alignment explanation
Indices: 137054866--137054953 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
137054856 TGTAACCCGC
* * * *
137054866 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
*
137054912 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
137054954 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.32, G:0.23, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:137062899 original size:38 final size:38
Alignment explanation
Indices: 137062850--137063035 Score: 219
Period size: 38 Copynumber: 4.8 Consensus size: 38
137062840 CACTCGATAC
* *
137062850 ATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAAC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * * *
137062888 ATAACTGGGTTAAATCCCGCATGCTTCGTGCTAGTAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
** *
137062926 ATATCCGGGTTAAATCCTACAGGCTTCGTGCTGATAAT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
137062964 ATATCCGGGTTAAATCCCGCAGGCATAGTGCTGGTACT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
137063002 ATATTCGGGCTTAAAGTTCCGCAGGCTTTGTGCT
1 ATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCT
137063036 AGTGACTGGA
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
38 103 0.84
39 5 0.04
40 15 0.12
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:137070007 original size:15 final size:15
Alignment explanation
Indices: 137069989--137070041 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
137069979 CAAAACAAAT
137069989 AAATCCAAGACAGAA-
1 AAATCCAAGA-AGAAG
*
137070004 AAATCCAAGATGAAG
1 AAATCCAAGAAGAAG
*
137070019 AAATCCAAGATA-TAG
1 AAATCCAAGA-AGAAG
137070034 AAATCCAA
1 AAATCCAA
137070042 TATACGATAC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 3 0.09
15 30 0.91
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (15 bp):
AAATCCAAGAAGAAG
Found at i:137088448 original size:71 final size:71
Alignment explanation
Indices: 137088327--137088459 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 71
137088317 GTTTTCCAAG
* * *
137088327 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
137088392 GTTTCA
66 GTTTCA
* * *
137088398 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
137088460 CCTGCTTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:137088720 original size:71 final size:71
Alignment explanation
Indices: 137088484--137088881 Score: 442
Period size: 71 Copynumber: 5.5 Consensus size: 71
137088474 ATGTTTTCCA
* * * *
137088484 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-T
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCT
137088548 ATGTTTC
66 AT-TTTC
* * *
137088555 AAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGTAATTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT-C
*
137088619 TATTAAATC
65 TATT--TTC
* * * *
137088628 TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-T
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCT
137088692 ATGTTTC
66 AT-TTTC
* * **
137088699 AAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT-C
*
137088764 TATTAAATC
65 TATT--TTC
* *** * * *
137088773 TAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCACGCTAATGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTC-AATTC
137088838 TATTTTC
65 TATTTTC
* * * *
137088845 AAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
137088882 TTAATTTTCG
Statistics
Matches: 277, Mismatches: 39, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
70 21 0.08
71 92 0.33
72 41 0.15
73 40 0.14
74 79 0.29
75 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCT
ATTTTC
Found at i:137088729 original size:144 final size:145
Alignment explanation
Indices: 137088485--137088809 Score: 625
Period size: 144 Copynumber: 2.2 Consensus size: 145
137088475 TGTTTTCCAA
*
137088485 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
137088550 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
137088614 ATTCCTATTAAATCT
131 ATTCCTATTAAATCT
137088629 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
137088694 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
137088759 ATTCCTATTAAATCT
131 ATTCCTATTAAATCT
*
137088774 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
137088810 TGCGGCACGC
Statistics
Matches: 178, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
144 107 0.60
145 71 0.40
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (145 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
ATTCCTATTAAATCT
Found at i:137088939 original size:67 final size:65
Alignment explanation
Indices: 137088827--137089083 Score: 300
Period size: 67 Copynumber: 3.8 Consensus size: 65
137088817 CGCTAATGTA
* * * *
137088827 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
1 TTTTCAAAATCTATTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCCG
137088892 T
65 T
*
137088893 TTTTCAAAATCTACTTTTCAAAGATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCC
1 TTTTCAAAATCTA-TTTTCAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCC
137088958 GT
64 GT
* *
137088960 TTTTCGAAATCTACTTTTCAAATTATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTT
1 TTTTCAAAATCTA-TTTTCAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTT
*
137089025 CCGC
62 CCGT
** * * **
137089029 TTTT-AATTTCTATGTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
1 TTTTCAAAATCTAT-TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
137089084 CAGTTCACCT
Statistics
Matches: 167, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
66 13 0.08
67 96 0.57
68 40 0.24
69 18 0.11
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (65 bp):
TTTTCAAAATCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCCGT
Found at i:137089047 original size:135 final size:133
Alignment explanation
Indices: 137088827--137089083 Score: 333
Period size: 135 Copynumber: 1.9 Consensus size: 133
137088817 CGCTAATGTA
* *
137088827 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
1 TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCCG
* * ** * **
137088892 TTTTTCAAAATCTACTTTTCAAAGATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTTAATTTC
66 CTTTTCAAAATCTACTTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCTTTAATTTC
137088957 CGT
131 CGT
137088960 TTTTCGAAA-TCTACTTTTCAAATTA-TTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAAT
1 TTTTC-AAATTCTA-TTTTCAAA--AGTTAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAAT
**
137089023 TTCCGCTTTT-AATTTCTA-TGTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
61 TTCCGCTTTTCAAAATCTACT-TTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
137089084 CAGTTCACCT
Statistics
Matches: 107, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
133 9 0.08
134 12 0.11
135 71 0.66
136 15 0.14
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (133 bp):
TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCCG
CTTTTCAAAATCTACTTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCTTTAATTTC
CGT
Found at i:137090335 original size:16 final size:17
Alignment explanation
Indices: 137090301--137090335 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
137090291 CAAAACTTAG
*
137090301 AATATAAAAATAATAAA
1 AATATAAAAATAAAAAA
137090318 AATA-AAAAATAAAAAA
1 AATATAAAAATAAAAAA
137090334 AA
1 AA
137090336 AATCAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AATATAAAAATAAAAAA
Found at i:137090460 original size:22 final size:23
Alignment explanation
Indices: 137090435--137090479 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
137090425 CCGGAGCTCC
137090435 CTCTCCCTCTCCCCT-TTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
*
137090457 CTCTCCCTCTCCTCTCTTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
137090480 TTTTCTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (23 bp):
CTCTCCCTCTCCCCTCTTCTTTT
Found at i:137090491 original size:27 final size:28
Alignment explanation
Indices: 137090431--137090489 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
137090421 CCCACCGGAG
137090431 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
1 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
** *
137090459 CTCCCTCT-CCTCTCTTCTTTTTTTTCT
1 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
137090486 -TCCC
1 CTCCC
137090490 CTTCTCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.14
27 16 0.57
28 8 0.29
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (28 bp):
CTCCCTCTCCCTCTCCCCTTTCTTTTCT
Found at i:137091268 original size:17 final size:18
Alignment explanation
Indices: 137091242--137091292 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 18
137091232 TTTCTTTTTC
137091242 ATAT-TATTATTATA-AT
1 ATATATATTATTATATAT
*
137091258 ATATATATTA-TATATTT
1 ATATATATTATTATATAT
*
137091275 ATGTATATTATTATATAT
1 ATATATATTATTATATAT
137091293 TTTTTAATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 8 0.28
17 15 0.52
18 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
ATATATATTATTATATAT
Found at i:137091310 original size:24 final size:23
Alignment explanation
Indices: 137091275--137091327 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
137091265 TTATATATTT
*
137091275 ATGTATATTATTATATATTTTTTA
1 ATGT-TATTATTATATATTTCTTA
*
137091299 ATGTTATGTATTGTATATTTCTTA
1 ATGTTAT-TATTATATATTTCTTA
*
137091323 CTGTT
1 ATGTT
137091328 CGTATACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.60
Consensus pattern (23 bp):
ATGTTATTATTATATATTTCTTA
Found at i:137093115 original size:131 final size:131
Alignment explanation
Indices: 137092876--137093265 Score: 428
Period size: 131 Copynumber: 3.0 Consensus size: 131
137092866 TTGCCTCACC
* * * ** *
137092876 TTAGAAAACACGAGTGAAATTCCGAAGAGATATTCGATCATTTTGAAAAAACGGGAGATTGCAA-
1 TTAGAAAACATGAGTGAAATTCCGAAGAGATCTTCGATCATTTTGAACAAA-GAAAAATTGCAAC
* *
137092940 CCAGCACGATAGGGCACTATTCCCTGAATTGCCAAACATTGAACATTTCTTTCGTTTTAAAGGG-
65 CCAGCACGATAGGGCACAATTCCC-GAATTGCCAAACATCGAACATTTCTTTCGTTTTAAAGGGT
137093004 TTT
129 TTT
* * *
137093007 TTAGAAAACGTGAGTGAAATTCCGAAG-GAATCTTCGATCGTTTTGAACAAATGAAAAAGTGCAA
1 TTAGAAAACATGAGTGAAATTCCGAAGAG-ATCTTCGATCATTTTGAACAAA-GAAAAATTGCAA
* *
137093071 CCCAGCACGATAGGGCACAATTCTCGAATTACCAAACATCGAACATTTCTTTCGTTTTAAAGGGT
64 CCCAGCACGATAGGGCACAATTCCCGAATTGCCAAACATCGAACATTTCTTTCGTTTTAAAGGGT
137093136 TTT
129 TTT
* * * ** * * * * * *
137093139 TTACAAATCATGAATGAAATTCTAAAGAGACCTTCGATTATCTTGAGCAAACAAGAAATTGCGAC
1 TTAGAAAACATGAGTGAAATTCCGAAGAGATCTTCGATCATTTTGAACAAAGAA-AAATTGCAAC
* * * * *
137093204 CCAGCACGTTAGGGCACAATTTCGCGAGTTGCCAAATATCGAACATCGTC-TTCGTTTTAAAG
65 CCAGCACGATAGGGCACAA-TTCCCGAATTGCCAAACATCGAACAT-TTCTTTCGTTTTAAAG
137093266 AATTTTTAAA
Statistics
Matches: 218, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
130 1 0.00
131 91 0.42
132 89 0.41
133 35 0.16
134 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
TTAGAAAACATGAGTGAAATTCCGAAGAGATCTTCGATCATTTTGAACAAAGAAAAATTGCAACC
CAGCACGATAGGGCACAATTCCCGAATTGCCAAACATCGAACATTTCTTTCGTTTTAAAGGGTTT
T
Found at i:137093206 original size:132 final size:131
Alignment explanation
Indices: 137092935--137093265 Score: 373
Period size: 132 Copynumber: 2.5 Consensus size: 131
137092925 AACGGGAGAT
* *
137092935 TGCAA-CCAGCACGATAGGGCACTATTCCCTGAATTGCCAAACATTGAACATTTCTTTCGTTTTA
1 TGCAACCCAGCACGATAGGGCACAATTCCC-GAATTGCCAAACATCGAACATTTCTTTCGTTTTA
* * * * * * * *
137092999 AAGGGTTTTTAGAAAACGTGAGTGAAATTCCGAAGGAATCTTCGATCGTTTTGAACAAATGAAAA
65 AAGGGTTTTTACAAAACATGAATGAAATTCCAAAGGAACCTTCGATCATCTTGAACAAATCAAAA
137093064 AG
130 AG
* *
137093066 TGCAACCCAGCACGATAGGGCACAATTCTCGAATTACCAAACATCGAACATTTCTTTCGTTTTAA
1 TGCAACCCAGCACGATAGGGCACAATTCCCGAATTGCCAAACATCGAACATTTCTTTCGTTTTAA
* * * *
137093131 AGGGTTTTTTACAAATCATGAATGAAATTCTAAA-GAGACCTTCGATTATCTTGAGCAAA-CAAG
66 AGGG-TTTTTACAAAACATGAATGAAATTCCAAAGGA-ACCTTCGATCATCTTGAACAAATCAA-
*
137093194 AAAT
128 AAAG
* * * * * *
137093198 TGCGACCCAGCACGTTAGGGCACAATTTCGCGAGTTGCCAAATATCGAACATCGTC-TTCGTTTT
1 TGCAACCCAGCACGATAGGGCACAA-TTCCCGAATTGCCAAACATCGAACAT-TTCTTTCGTTTT
137093262 AAAG
64 AAAG
137093266 AATTTTTAAA
Statistics
Matches: 170, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
131 46 0.27
132 88 0.52
133 34 0.20
134 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (131 bp):
TGCAACCCAGCACGATAGGGCACAATTCCCGAATTGCCAAACATCGAACATTTCTTTCGTTTTAA
AGGGTTTTTACAAAACATGAATGAAATTCCAAAGGAACCTTCGATCATCTTGAACAAATCAAAAA
G
Found at i:137093626 original size:14 final size:14
Alignment explanation
Indices: 137093607--137093636 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
137093597 AACACGACAC
137093607 AAAAATAATGGACT
1 AAAAATAATGGACT
*
137093621 AAAAATGATGGACT
1 AAAAATAATGGACT
137093635 AA
1 AA
137093637 CAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:137093937 original size:2 final size:2
Alignment explanation
Indices: 137093930--137093955 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
137093920 AAATATGAAT
137093930 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
137093956 AATTGGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:137095806 original size:37 final size:36
Alignment explanation
Indices: 137095756--137095842 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
137095746 TACGAAGTCT
137095756 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
*
137095792 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
137095829 TCACCCGGAACATA
1 T-ACCCGG-ACATA
137095843 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
Found at i:137095977 original size:49 final size:49
Alignment explanation
Indices: 137095911--137096063 Score: 297
Period size: 49 Copynumber: 3.1 Consensus size: 49
137095901 TTTACCACAT
*
137095911 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
137095960 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
137096009 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
137096058 ATATAT
1 ATATAT
137096064 TATTATGTAC
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 103 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:137097991 original size:2 final size:2
Alignment explanation
Indices: 137097986--137098040 Score: 53
Period size: 2 Copynumber: 29.0 Consensus size: 2
137097976 AACTAATGGC
* * *
137097986 AT AT AT AC AT A- AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
137098025 AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT
137098041 TAGAAATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:137098040 original size:20 final size:20
Alignment explanation
Indices: 137097986--137098033 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
137097976 AACTAATGGC
137097986 ATATATACAT-AATATATAT
1 ATATATACATAAATATATAT
*
137098005 ATAATACACATAATATATATAT
1 AT-ATATACATAA-ATATATAT
137098027 ATATATA
1 ATATATA
137098034 TACATATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 5 0.21
22 10 0.42
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATATACATAAATATATAT
Found at i:137098886 original size:33 final size:31
Alignment explanation
Indices: 137098849--137098927 Score: 104
Period size: 33 Copynumber: 2.5 Consensus size: 31
137098839 TGTTTTTTTT
*
137098849 TTTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTTTGCTGG-AATTTTTTGCTGG-AA
* *
137098882 TTTTTTTTTGGTGCTGGAATTTTTTGCTGGAT
1 TTTTTTTTT-TTGCTGGAATTTTTTGCTGGAA
137098914 TTTTTTTTTTTGCT
1 TTTTTTTTTTTGCT
137098928 TCCCCTCTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 4 0.10
32 10 0.24
33 21 0.51
34 6 0.15
ACGTcount: A:0.11, C:0.06, G:0.18, T:0.65
Consensus pattern (31 bp):
TTTTTTTTTTTGCTGGAATTTTTTGCTGGAA
Found at i:137098888 original size:14 final size:15
Alignment explanation
Indices: 137098853--137098888 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
137098843 TTTTTTTTTT
137098853 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
137098868 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
137098882 TTTTTTT
1 TTTTTTT
137098889 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:137098889 original size:15 final size:16
Alignment explanation
Indices: 137098852--137098889 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
137098842 TTTTTTTTTT
137098852 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
137098868 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
137098882 TTTTTTTT
1 TTTTTTTT
137098890 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:137098918 original size:14 final size:15
Alignment explanation
Indices: 137098852--137098920 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
137098842 TTTTTTTTTT
137098852 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
137098867 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
137098882 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
137098901 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
137098913 TTTTTTTT
1 TTTTTTTT
137098921 TTTTGCTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:137098924 original size:34 final size:35
Alignment explanation
Indices: 137098845--137098925 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 35
137098835 CTATTGTTTT
** *
137098845 TTTTTTTTTTTTTTTGCTGGAAATTTTTTTCTGGA
1 TTTTTTTTTTTTGGTGCTGGAAATTTTTTGCTGGA
**
137098880 -AATTTTTTTTTGGTGCTGG-AATTTTTTGCTGGA
1 TTTTTTTTTTTTGGTGCTGGAAATTTTTTGCTGGA
137098913 TTTTTTTTTTTTG
1 TTTTTTTTTTTTG
137098926 CTTCCCCTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
33 13 0.34
34 25 0.66
ACGTcount: A:0.11, C:0.05, G:0.17, T:0.67
Consensus pattern (35 bp):
TTTTTTTTTTTTGGTGCTGGAAATTTTTTGCTGGA
Found at i:137099369 original size:35 final size:35
Alignment explanation
Indices: 137099329--137099434 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
137099319 GGGGTGTGTG
*
137099329 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
137099364 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
137099399 ATGGTGCTGGTGGCAGGCAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
137099434 A
1 A
137099435 GAGGCAAGTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.22, C:0.12, G:0.50, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:137100219 original size:48 final size:51
Alignment explanation
Indices: 137100143--137100287 Score: 181
Period size: 54 Copynumber: 2.8 Consensus size: 51
137100133 ATATGACCTA
** *
137100143 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAA-CAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAAATAAC
*
137100191 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-AGAAA-TAAC
*
137100245 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
137100288 TAGGAATTGG
Statistics
Matches: 83, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 2 0.02
52 1 0.01
53 3 0.04
54 37 0.45
55 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (51 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAGAAATAAC
Found at i:137100281 original size:54 final size:48
Alignment explanation
Indices: 137100142--137100287 Score: 177
Period size: 48 Copynumber: 2.9 Consensus size: 48
137100132 CATATGACCT
** *
137100142 AAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAA
*
137100190 AAGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-AAA--A
*
137100243 ACAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAA
1 A-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
137100288 TAGGAATTGG
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
47 1 0.01
48 37 0.44
49 1 0.01
50 1 0.01
51 2 0.02
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (48 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAA
Found at i:137100666 original size:77 final size:70
Alignment explanation
Indices: 137100346--137100927 Score: 1011
Period size: 70 Copynumber: 8.2 Consensus size: 70
137100336 TCAACTCACC
137100346 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
137100411 TCGCCA
65 TCGCAA
*
137100417 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
137100482 CGCAA
66 CGCAA
*
137100487 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
137100552 CGCAA
66 CGCAA
137100557 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
137100622 CGCCA
66 CGCAA
*
137100627 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
137100692 CACCTCTCGCAA
59 CACCTCTCGCAA
*
137100704 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
137100769 CGCAA
66 CGCAA
*
137100774 TATGAGTTGATTTTAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
137100839 CGCAA
66 CGCAA
*
137100844 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
137100909 CGCAA
66 CGCAA
*
137100914 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
137100928 CTGTCACTTG
Statistics
Matches: 489, Mismatches: 15, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
70 409 0.84
71 10 0.02
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.13
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAA
Found at i:137100891 original size:287 final size:287
Alignment explanation
Indices: 137100368--137100927 Score: 1039
Period size: 287 Copynumber: 2.0 Consensus size: 287
137100358 TTTGAAACAT
*
137100368 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
*
137100433 AACATAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
137100498 TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAG
131 TTTAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
137100563 TTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCAT
196 TTGATTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAAT
137100628 ATGAGTTGATTTTGAAACATAAATTGA
261 ATGAGTTGATTTTGAAACATAAATTGA
*
137100655 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
*
137100720 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
137100785 TTTAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
131 TTTAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
137100850 TTGATTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAAT
196 TTGATTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAAT
*
137100915 GTGAGTTGATTTT
261 ATGAGTTGATTTT
137100928 CTGTCACTTG
Statistics
Matches: 264, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
287 264 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (287 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTGAAACATAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTGAAACATAAATTGA
Found at i:137108515 original size:2 final size:2
Alignment explanation
Indices: 137108508--137108542 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
137108498 ATGTGCAAAA
* *
137108508 AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
137108543 AAATATACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:137108731 original size:20 final size:21
Alignment explanation
Indices: 137108702--137108753 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
137108692 AACTAATGGC
*
137108702 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
137108723 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
137108743 ATATATACATA
1 ATATACACATA
137108754 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:137109289 original size:11 final size:12
Alignment explanation
Indices: 137109273--137109309 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
137109263 AGAAAAAAAA
137109273 GGAAGAGAG-AG
1 GGAAGAGAGAAG
137109284 GGAAGAGAGAAG
1 GGAAGAGAGAAG
137109296 GG-AGAGAGAAG
1 GGAAGAGAGAAG
137109307 GGA
1 GGA
137109310 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:137109310 original size:11 final size:11
Alignment explanation
Indices: 137109271--137109320 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
137109261 AAAGAAAAAA
*
137109271 AAGGAAGAGAG
1 AAGGGAGAGAG
137109282 -AGGGAAGAGAG
1 AAGGG-AGAGAG
137109293 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
137109304 AAGGGAGGGGG
1 AAGGGAGAGAG
137109315 AAGGGA
1 AAGGGA
137109321 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:137109617 original size:14 final size:15
Alignment explanation
Indices: 137109582--137109617 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
137109572 TTTTTTGGTT
137109582 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
137109597 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
137109611 TTTTTTT
1 TTTTTTT
137109618 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:137109618 original size:15 final size:16
Alignment explanation
Indices: 137109581--137109618 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
137109571 TTTTTTTGGT
137109581 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
137109597 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
137109611 TTTTTTTT
1 TTTTTTTT
137109619 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:137109632 original size:33 final size:33
Alignment explanation
Indices: 137109580--137109653 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
137109570 TTTTTTTTGG
*
137109580 TTTTTTTT-TGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
**
137109612 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATTT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAAT
137109645 TTTTTTTTG
1 TTTTTTTTG
137109654 CTTCCCCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 9 0.24
33 22 0.59
34 6 0.16
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
Found at i:137110096 original size:35 final size:35
Alignment explanation
Indices: 137110056--137110161 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
137110046 GGGGTGTGTG
*
137110056 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
137110091 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
137110126 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
137110161 A
1 A
137110162 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:137115125 original size:26 final size:26
Alignment explanation
Indices: 137115088--137115171 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
137115078 TGATACAAAT
* *
137115088 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
137115114 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
137115140 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
137115166 TGATAA
1 TGATAA
137115172 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:137116675 original size:26 final size:26
Alignment explanation
Indices: 137116646--137116698 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
137116636 TTTACAGTTT
137116646 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
137116672 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
137116698 T
1 T
137116699 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:137118210 original size:12 final size:12
Alignment explanation
Indices: 137118193--137118218 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
137118183 TGCGCCATAT
137118193 TTTTATTTTAAG
1 TTTTATTTTAAG
137118205 TTTTATTTTAAG
1 TTTTATTTTAAG
137118217 TT
1 TT
137118219 GGGTTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTATTTTAAG
Found at i:137119151 original size:16 final size:16
Alignment explanation
Indices: 137119110--137119151 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
137119100 CCAACAGAGG
137119110 CCCAAAACCCTTACAA
1 CCCAAAACCCTTACAA
*
137119126 CCTAAAACCCTTACAA
1 CCCAAAACCCTTACAA
*
137119142 CCCAATACCC
1 CCCAAAACCC
137119152 ATTGAAACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.14
Consensus pattern (16 bp):
CCCAAAACCCTTACAA
Found at i:137120441 original size:30 final size:27
Alignment explanation
Indices: 137120407--137120465 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
137120397 TGCATTTTTC
137120407 ATATTAATATATATATATATATTTAATATT
1 ATATT-AT-TATATATATAT-TTTAATATT
*
137120437 ATATTATTATGTATATATTTTAATATT
1 ATATTATTATATATATATTTTAATATT
137120464 AT
1 AT
137120466 TAGCTATCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 11 0.39
28 10 0.36
29 2 0.07
30 5 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
ATATTATTATATATATATTTTAATATT
Found at i:137120649 original size:21 final size:21
Alignment explanation
Indices: 137120607--137120649 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
137120597 TAATATAATA
* *
137120607 TATATATATATCATATAGGTT
1 TATATACATATCATACAGGTT
*
137120628 TATATACATATCATACATGTT
1 TATATACATATCATACAGGTT
137120649 T
1 T
137120650 CATTATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
TATATACATATCATACAGGTT
Found at i:137120670 original size:5 final size:6
Alignment explanation
Indices: 137120652--137120680 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
137120642 ACATGTTTCA
137120652 TTATTT TTATTT TTATTT TTATTT TTATT
1 TTATTT TTATTT TTATTT TTATTT TTATT
137120681 AGTTATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTATTT
Found at i:137121541 original size:3 final size:3
Alignment explanation
Indices: 137121533--137121596 Score: 103
Period size: 3 Copynumber: 21.0 Consensus size: 3
137121523 TCTTAATACC
137121533 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
137121581 A-T ATAT ATT CATT ATT
1 ATT AT-T ATT -ATT ATT
137121597 TTCTCGTATT
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.03
3 50 0.86
4 6 0.10
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:137123563 original size:19 final size:18
Alignment explanation
Indices: 137123539--137123586 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
137123529 TGTATATTTA
*
137123539 TTTGGGTATTTTTTTTATT
1 TTTGGGT-TTTATTTTATT
137123558 TTTGGGTTTTATTTTA-T
1 TTTGGGTTTTATTTTATT
*
137123575 GTTGGGTTTTAT
1 TTTGGGTTTTAT
137123587 CAATTTGGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 12 0.44
18 8 0.30
19 7 0.26
ACGTcount: A:0.10, C:0.00, G:0.21, T:0.69
Consensus pattern (18 bp):
TTTGGGTTTTATTTTATT
Found at i:137124841 original size:19 final size:18
Alignment explanation
Indices: 137124814--137124849 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
137124804 ATATTTAAGT
137124814 AATAATAATAAAAGAACGA
1 AATAATAATAAAA-AACGA
*
137124833 AATAGTAATAAAAAACG
1 AATAATAATAAAAAACG
137124850 CACCTTCGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.06, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAATAATAAAAAACGA
Found at i:137125966 original size:27 final size:26
Alignment explanation
Indices: 137125934--137126101 Score: 110
Period size: 27 Copynumber: 6.3 Consensus size: 26
137125924 AAAATTTATG
137125934 TATTATTTATTTTAAATTATTTTTACA
1 TATTATTTATTTTAAATTA-TTTTACA
*
137125961 TATTATTTATTTT-AATTATTTTCCA
1 TATTATTTATTTTAAATTATTTTACA
* **
137125986 TATATAATTTATTTTAAATCT-TTGTGTA
1 TAT-T-ATTTATTTTAAAT-TATTTTACA
** *
137126014 TATTATCAATTTTAAA--ATTTTATA
1 TATTATTTATTTTAAATTATTTTACA
* ** *
137126038 TGTATTACTTGGTTTAAATTATTTTATA
1 --TATTATTTATTTTAAATTATTTTACA
* * *
137126066 TGTTATTTACTTTAAAATTCTTTTACA
1 TATTATTTA-TTTTAAATTATTTTACA
137126093 TTATTATTT
1 -TATTATTT
137126102 TTTAAAACTG
Statistics
Matches: 109, Mismatches: 21, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
24 5 0.05
25 9 0.08
26 33 0.30
27 36 0.33
28 25 0.23
29 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (26 bp):
TATTATTTATTTTAAATTATTTTACA
Found at i:137125978 original size:13 final size:13
Alignment explanation
Indices: 137125935--137125981 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
137125925 AAATTTATGT
137125935 ATTATTTATTTTAA
1 ATTATTTATTTT-A
**
137125949 ATTATTT-TTACA
1 ATTATTTATTTTA
137125961 TATTATTTATTTTA
1 -ATTATTTATTTTA
137125975 ATTATTT
1 ATTATTT
137125982 TCCATATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
12 1 0.04
13 16 0.59
14 10 0.37
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (13 bp):
ATTATTTATTTTA
Found at i:137126053 original size:26 final size:29
Alignment explanation
Indices: 137126024--137126077 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
137126014 TATTATCAAT
137126024 TTTAAA-ATTTTATATG-TA-TTACTTGG
1 TTTAAATATTTTATATGTTATTTACTTGG
137126050 TTTAAATTATTTTATATGTTATTTACTT
1 TTTAAA-TATTTTATATGTTATTTACTT
137126078 TAAAATTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.25
28 10 0.42
29 2 0.08
30 6 0.25
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (29 bp):
TTTAAATATTTTATATGTTATTTACTTGG
Found at i:137126079 original size:26 final size:26
Alignment explanation
Indices: 137125928--137126126 Score: 124
Period size: 26 Copynumber: 7.6 Consensus size: 26
137125918 ACTTTAAAAA
*
137125928 TTTATGTATTATTTATTTTAAATTATT
1 TTTATATATTATTTATTTTAAATTA-T
*
137125955 TTTACATATTATTTATTTT-AATTAT
1 TTTATATATTATTTATTTTAAATTAT
*
137125980 TTTCCATATATAATTTATTTTAAATCT-T
1 TTT--ATATATTATTTATTTTAAAT-TAT
* * **
137126008 TGTGTATATTATCAATTTTAAA--AT
1 TTTATATATTATTTATTTTAAATTAT
* **
137126032 TTTATATGTATTACTTGGTTTAAATTAT
1 TTTATA--TATTATTTATTTTAAATTAT
* * *
137126060 TTTATATGTTATTTACTTTAAAATTCT
1 TTTATATATTATTTA-TTTTAAATTAT
* * * *
137126087 TTTACATTATTATTT-TTTAAAACTGT
1 TTTATA-TATTATTTATTTTAAATTAT
137126113 TTTATAT-TT-TTTAT
1 TTTATATATTATTTAT
137126127 ATATTATGTA
Statistics
Matches: 133, Mismatches: 27, Indels: 27
0.71 0.14 0.14
Matches are distributed among these distances:
23 3 0.02
24 8 0.06
25 5 0.04
26 51 0.38
27 44 0.33
28 21 0.16
29 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (26 bp):
TTTATATATTATTTATTTTAAATTAT
Found at i:137126233 original size:26 final size:27
Alignment explanation
Indices: 137126179--137126260 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
137126169 TAAACTTTTA
*
137126179 TATGTCATCTTAAATTGTTTTATGA-AT
1 TATGTCATTTTAAATTGTTTTAT-ATAT
*
137126206 TA-GTCATTTTAGATTGTTTTATATAT
1 TATGTCATTTTAAATTGTTTTATATAT
* * *
137126232 TATTTTATTTTAAATTGTTTTGTATAT
1 TATGTCATTTTAAATTGTTTTATATAT
137126259 TA
1 TA
137126261 ATTTTTTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.02
26 22 0.47
27 24 0.51
ACGTcount: A:0.28, C:0.04, G:0.10, T:0.59
Consensus pattern (27 bp):
TATGTCATTTTAAATTGTTTTATATAT
Found at i:137126249 original size:27 final size:26
Alignment explanation
Indices: 137126188--137126272 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
137126178 ATATGTCATC
* *
137126188 TTAAATTGTTTTATGA-ATTAGTCATT
1 TTAAATTGTTTTAT-ATATTAATTATT
* *
137126214 TTAGATTGTTTTATATATTATTTTATT
1 TTAAATTGTTTTATATATTA-ATTATT
*
137126241 TTAAATTGTTTTGTATATTAATT-TT
1 TTAAATTGTTTTATATATTAATTATT
137126266 TTAAATT
1 TTAAATT
137126273 ATTATTTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 10 0.20
26 19 0.37
27 22 0.43
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.61
Consensus pattern (26 bp):
TTAAATTGTTTTATATATTAATTATT
Found at i:137126276 original size:43 final size:45
Alignment explanation
Indices: 137126229--137126326 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 45
137126219 TTGTTTTATA
*
137126229 TATTATTTTATTTTAAATTG-TTTTGT-ATAT-TAATTTTTTAAA-T
1 TATTATTTTATTTCAAATTGCTTTTGTAATATCT-A-TTTTTAAACT
*
137126272 TATTA-TTTACTTCAAATTGCTTTTGTAATATCTATTTTTAAACT
1 TATTATTTTATTTCAAATTGCTTTTGTAATATCTATTTTTAAACT
*
137126316 TATTTTTTTAT
1 TATTATTTTAT
137126327 GTATTATTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
42 12 0.26
43 19 0.41
44 10 0.22
45 5 0.11
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (45 bp):
TATTATTTTATTTCAAATTGCTTTTGTAATATCTATTTTTAAACT
Found at i:137126367 original size:22 final size:25
Alignment explanation
Indices: 137126328--137126385 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 25
137126318 TTTTTTTATG
*
137126328 TATTATTT-GTTTAGAATT-GTCT-
1 TATTATTTATTTTAGAATTAGTCTA
* *
137126350 TATTATTTATTTTA-AATTATTTTA
1 TATTATTTATTTTAGAATTAGTCTA
137126374 TATTATTTATTT
1 TATTATTTATTT
137126386 CATGTCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 12 0.40
23 6 0.20
24 12 0.40
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (25 bp):
TATTATTTATTTTAGAATTAGTCTA
Found at i:137128231 original size:136 final size:136
Alignment explanation
Indices: 137127987--137128271 Score: 527
Period size: 136 Copynumber: 2.1 Consensus size: 136
137127977 TATTGGGCCT
** *
137127987 AAGCCCATTCAGGTAACAGTGGTACAGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACAGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
137128052 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
137128117 ATATGC
131 ATATGC
137128123 AAGCCCATTTGGGTAACAGTGGTACTAGGG-AAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAACAGTGGTAC-AGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCT
137128187 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
65 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
137128252 CATATGC
130 CATATGC
137128259 AAGCCCATTTGGG
1 AAGCCCATTTGGG
137128272 GAGACTACTC
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
136 141 0.97
137 4 0.03
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACAGGGCAAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:137128556 original size:25 final size:27
Alignment explanation
Indices: 137128519--137128572 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
137128509 TCAAACATGC
137128519 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
137128545 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
137128571 AT
1 AT
137128573 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:137130091 original size:26 final size:26
Alignment explanation
Indices: 137130055--137130216 Score: 279
Period size: 26 Copynumber: 6.2 Consensus size: 26
137130045 CATGATATTC
137130055 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
137130081 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
137130107 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
137130133 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
137130159 TTATCATGGAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
*
137130185 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
137130211 TTATCA
1 TTATCA
137130217 ATTTGTATCA
Statistics
Matches: 127, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 127 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:137136565 original size:2 final size:2
Alignment explanation
Indices: 137136511--137136547 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
137136501 AATATATGCC
137136511 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
137136548 GTTAAAGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:137136772 original size:17 final size:16
Alignment explanation
Indices: 137136728--137136778 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
137136718 CATTAAAAAC
*
137136728 ATATATAATAATATAC
1 ATATATAATAATATAT
*
137136744 ATAAATATATAATATAT
1 ATATATA-ATAATATAT
137136761 ATATTATAATAATA-AT
1 ATA-TATAATAATATAT
137136777 AT
1 AT
137136779 GAAAAAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 10 0.33
17 17 0.57
18 3 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATATAATAATATAT
Found at i:137137558 original size:27 final size:29
Alignment explanation
Indices: 137137528--137137586 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
137137518 TCATTTGAGA
137137528 AGGGGA-AGAAAAAAAAGAAGAGA-GGAG
1 AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
* **
137137555 A-GGGAGAGAAAAGAAAGGGGAGAGGGAG
1 AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
137137583 AGGG
1 AGGG
137137587 AGCTCCGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.15
27 15 0.58
28 5 0.19
29 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (29 bp):
AGGGGAGAGAAAAAAAAGAAGAGAGGGAG
Found at i:137137583 original size:20 final size:23
Alignment explanation
Indices: 137137540--137137584 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
137137530 GGGAAGAAAA
137137540 AAAAGAAGAGAGGAGAGGGAGAG
1 AAAAGAAGAGAGGAGAGGGAGAG
*
137137563 AAAAGAA-AGGGGAGAGGGAGAG
1 AAAAGAAGAGAGGAGAGGGAGAG
137137585 GGAGCTCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (23 bp):
AAAAGAAGAGAGGAGAGGGAGAG
Found at i:137137708 original size:16 final size:17
Alignment explanation
Indices: 137137683--137137717 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
137137673 AAAATCTGAT
*
137137683 TTTTTTTTATTTTT-TA
1 TTTTTATTATTTTTATA
137137699 TTTTTATTATTTTTATA
1 TTTTTATTATTTTTATA
137137716 TT
1 TT
137137718 CTAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTATTATTTTTATA
Found at i:137139070 original size:67 final size:64
Alignment explanation
Indices: 137138934--137139189 Score: 277
Period size: 67 Copynumber: 3.8 Consensus size: 64
137138924 AGGTGAGCTG
** * * * * *
137138934 AGGCTCAACTCATTTTTCGCAATATGGGTTGATTTTTGAAACA-TAGAAATT-AAAAGCGGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTGAAA-AGTAG-ATTTGAAAAAC-GAAAT
137138997 TAAA
62 T-AA
137139001 AGGCTCAACTCACCTCTCGCAATATGAGTTAATAATTTGAAAAGTAGATTTCG-AAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAAT--TTTGAAAAGTAGATTT-GAAAAAC-GAAAT
137139065 TAA
62 TAA
*
137139068 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAAAACGAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAAT-TTTGAAAAGTAGA-TTTGAAAAACG-AAATT
137139133 AA
63 AA
*
137139135 AGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAA-TAGAATTTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTGAAAAGTAG-ATTTGAAAA
137139190 TACCTTAGCG
Statistics
Matches: 167, Mismatches: 12, Indels: 21
0.83 0.06 0.10
Matches are distributed among these distances:
66 28 0.17
67 118 0.71
68 21 0.13
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (64 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGAAAAGTAGATTTGAAAAACGAAATTAA
Found at i:137139376 original size:71 final size:71
Alignment explanation
Indices: 137139068--137139690 Score: 456
Period size: 71 Copynumber: 8.5 Consensus size: 71
137139058 CAGAAATTAA
* * * * *
137139068 AGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAAAAGTAGATTTTGAAA--AAC-GAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-TAGA-ATTGAAATTACCTCAAC
* **
137139130 AT---TAA
64 GTGCCTCG
* * * * * *
137139135 AGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGAAAATAGAATTTGAAAATACCTTAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAA-TTGAAATTACCTCAACG
* *
137139200 TGCCGCA
65 TGCCTCG
* * * *
137139207 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTA-CTCAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA--AAATA-GAATTGAAATTACCTCAA
*
137139271 CGTGCCCCG
63 CGTGCCTCG
* * *
137139280 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTGAAATTACCTCAACG
* *
137139344 TGTCTTG
65 TGCCTCG
* * *
137139351 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA--AAATA-GAATTGAAATTACCTCAA
137139416 CGTGCCTCG
63 CGTGCCTCG
* * *
137139425 AGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATA-AATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTGAAATTACCTCAACG
* *
137139489 TGTCTTG
65 TGCCTCG
* * * ** **
137139496 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAGCAGGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TT-GAAAATA-GAATT-GAA--ATTACC
* ** *
137139561 TGAAAATACCTCAG
59 TCAACGTGCCTC-G
* * *
137139575 CGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AATTGAAATT
1 AG-G--CT----C-AA-CTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ATAGAATTGAAATT
* *
137139639 ACCTCAACGTGTCTTG
56 ACCTCAACGTGCCTCG
*
137139655 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
137139691 CTTGGAAAAC
Statistics
Matches: 437, Mismatches: 83, Indels: 68
0.74 0.14 0.12
Matches are distributed among these distances:
66 10 0.02
67 38 0.09
68 2 0.00
69 2 0.00
70 11 0.03
71 123 0.28
72 46 0.11
73 55 0.13
74 74 0.17
75 7 0.02
76 2 0.00
77 2 0.00
78 8 0.02
79 3 0.01
80 3 0.01
81 8 0.02
82 2 0.00
83 2 0.00
84 4 0.01
85 4 0.01
86 5 0.01
87 4 0.01
88 22 0.05
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAATTGAAATTACCTCAACGT
GCCTCG
Found at i:137139480 original size:145 final size:144
Alignment explanation
Indices: 137139139--137139781 Score: 732
Period size: 159 Copynumber: 4.2 Consensus size: 144
137139129 AATTAAAGGC
* * * * * * * *
137139139 TCAACTCACCTCTCGCAATATGAATTAACTTTTGAAA-ATAGAATTTGAAAATACCTTAGCGTGC
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATA-AA-TTGAAATTACCTCAACGTGT
*** * *
137139203 CGCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTA-C
64 CTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAGATTTAATAGGAATTGAAATTACC
*
137139267 TCATCGTGCCCCGAGGT
129 TCAGCGTG-CCCGAGGT
*
137139284 TCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
*
137139349 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTC
66 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAGATTTAATAGGAATTGAAATTACCTC
137139414 AGCGTGCCTCGAGGT
131 AGCGTGCC-CGAGGT
*
137139429 TCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
* *
137139494 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAGCAGGA
66 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TT-TT-------A-G-ATT-TAA-TAGGA
* *
137139559 ATTGAAAATACCTCAGCGTGCCCTGAGGC
117 ATTGAAATTACCTCAGCGTGCCC-GAGGT
137139588 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
* *
137139653 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTGGAAAACATGAATTAAAAAGTAGA
66 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TT-TT-------A-G-ATT--TAA-TAGG
* *
137139718 AATTGAAAATACCTCAGCGTGCCCTGAGGC
116 AATTGAAATTACCTCAGCGTGCCC-GAGGT
137139748 TCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 TCAACTCACTTCTCGCAATATGAGTTGATTTTTG
137139782 GAAAAAACAA
Statistics
Matches: 457, Mismatches: 22, Indels: 23
0.91 0.04 0.05
Matches are distributed among these distances:
144 77 0.17
145 146 0.32
146 3 0.01
147 2 0.00
148 2 0.00
155 1 0.00
156 1 0.00
157 3 0.01
158 3 0.01
159 148 0.32
160 71 0.16
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (144 bp):
TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCT
TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTAGATTTAATAGGAATTGAAATTACCTC
AGCGTGCCCGAGGT
Found at i:137144733 original size:40 final size:39
Alignment explanation
Indices: 137144688--137144817 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
137144678 CGGAATACAA
137144688 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
137144728 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
137144768 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
137144808 CCGGATATAA
1 CCGGATATAA
137144818 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:137152792 original size:40 final size:39
Alignment explanation
Indices: 137152747--137152876 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
137152737 CGGAATACAA
137152747 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
137152787 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
137152827 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
137152867 CCGGATATAA
1 CCGGATATAA
137152877 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:137158904 original size:65 final size:64
Alignment explanation
Indices: 137158793--137158915 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 64
137158783 AAAGTATTGC
137158793 AAGCTGGATTCTTTTGGCCAACATATTTAAAGATGTGTTTGCTTACATAAGAAGTTGTTTTTGT
1 AAGCTGGATTCTTTTGGCCAACATATTTAAAGATGTGTTTGCTTACATAAGAAGTTGTTTTTGT
* *
137158857 AAGCTGGATTCTTTTGGCCAACGCTATTTAAAGATGTGTTTGTTTACATAAGAAGTTGT
1 AAGCTGGATTCTTTTGGCCAAC-ATATTTAAAGATGTGTTTGCTTACATAAGAAGTTGT
137158916 GATCAATGCC
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
64 22 0.39
65 34 0.61
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (64 bp):
AAGCTGGATTCTTTTGGCCAACATATTTAAAGATGTGTTTGCTTACATAAGAAGTTGTTTTTGT
Found at i:137164832 original size:40 final size:39
Alignment explanation
Indices: 137164653--137164838 Score: 173
Period size: 40 Copynumber: 4.6 Consensus size: 39
137164643 GATACTCGTT
* *
137164653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * *
137164693 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
137164733 CTAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCA-CA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACT-AGCA
* *
137164773 CTAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TAGCA
*
137164814 CAAAGCCTCCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
137164839 CATCATTCGA
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 3 0.02
40 114 0.89
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:137164838 original size:80 final size:80
Alignment explanation
Indices: 137164653--137164838 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 80
137164643 GATACTCGTT
* *
137164653 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCA
*
137164717 GATTTAGTAACTCGCA
65 GATTTAGTAACTAGCA
* * * **
137164733 CTAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCACACTAATGCCTTC-GGATCTTAGTC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACC
*
137164795 CGGATTTAGTAACTTAGCA
63 CAGATTTAGTAAC-TAGCA
*
137164814 CAAAGCCTCCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
137164839 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.80
81 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAG
ATTTAGTAACTAGCA
Found at i:137169588 original size:45 final size:45
Alignment explanation
Indices: 137169524--137169742 Score: 331
Period size: 45 Copynumber: 5.0 Consensus size: 45
137169514 TATCGTACAG
*
137169524 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
137169569 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
137169614 TACTATTTGGGCCTTTGAGCCTAGCA-GCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
137169658 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
137169703 TGA-TA-TCGGG-CTTTGAGCCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
137169743 TTTGATAAAA
Statistics
Matches: 163, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
42 11 0.07
43 18 0.11
44 44 0.27
45 89 0.55
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:137169678 original size:89 final size:90
Alignment explanation
Indices: 137169524--137169738 Score: 323
Period size: 89 Copynumber: 2.4 Consensus size: 90
137169514 TATCGTACAG
* * * *
137169524 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTTGGGCCTTTGAGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAATACTATTCGGGCCTTCGAGC
*
137169589 CTAGCAGGCTATGATGCCGGTGAAA
66 CTAGCAGGCTATAATGCCGGTGAAA
* *
137169614 TACTATTTGGGCCTTTGAGCCTAGCA-GCTATAATGCCGATGAGATACTATTCGGGCCTTCGAGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAATACTATTCGGGCCTTCGAGC
137169678 CTAGCAGGCTATAATGCCGGTGAAA
66 CTAGCAGGCTATAATGCCGGTGAAA
137169703 TGA-TA-TCGGG-CTTTGAGCCTAGCAGGCTA-AATGCCG
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCG
137169739 GTGATTTGAT
Statistics
Matches: 115, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
87 21 0.18
88 8 0.07
89 60 0.52
90 26 0.23
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (90 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAAATACTATTCGGGCCTTCGAGC
CTAGCAGGCTATAATGCCGGTGAAA
Found at i:137170248 original size:16 final size:18
Alignment explanation
Indices: 137170217--137170249 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
137170207 AACTCGTCAC
137170217 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
137170235 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
137170250 GTCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:137175867 original size:15 final size:15
Alignment explanation
Indices: 137175822--137175860 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
137175812 AAATGAGTTA
*
137175822 GAAAAAGAAACGAGT
1 GAAAAAGAAAAGAGT
137175837 GAAAAAGAAAAGAGT
1 GAAAAAGAAAAGAGT
*
137175852 GGAAAAGAA
1 GAAAAAGAA
137175861 GAAAGTGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.64, C:0.03, G:0.28, T:0.05
Consensus pattern (15 bp):
GAAAAAGAAAAGAGT
Found at i:137178409 original size:13 final size:13
Alignment explanation
Indices: 137178391--137178415 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137178381 GGTTCTTTTT
137178391 TTTTGTTATTATC
1 TTTTGTTATTATC
137178404 TTTTGTTATTAT
1 TTTTGTTATTAT
137178416 ATGAGATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTTGTTATTATC
Found at i:137178676 original size:50 final size:50
Alignment explanation
Indices: 137178610--137178954 Score: 340
Period size: 50 Copynumber: 6.9 Consensus size: 50
137178600 AAGACAGTTA
*
137178610 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
* * * * * *
137178660 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA--TCATACCTGATAGCT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCAGATTG-T
* * *
137178710 TCA-ATCACGTGTGTAGTACTAATTGCAGGCTACTATGTGTACCAGATTGT
1 T-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
* * * * *
137178760 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAGCTT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG--T
* * * * *
137178812 TA-ATCACGTGTGTAGTACTAAGTGCAGGGTACTTCGTGTATCAGATGGT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
* *
137178861 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTAT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
* * * * * * *
137178911 TAGGTCGCATGTGTTGTACTTAGTGCAGGATACTATGCGTACCA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
137178955 AAGAGCTTCG
Statistics
Matches: 242, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
48 1 0.00
49 12 0.05
50 179 0.74
51 46 0.19
52 4 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGT
Found at i:137178740 original size:100 final size:101
Alignment explanation
Indices: 137178614--137178895 Score: 431
Period size: 101 Copynumber: 2.8 Consensus size: 101
137178604 CAGTTATAGG
*
137178614 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
* **
137178679 TAAGTGTAGGCTACTAT-CATACCTGATAGCTTCAA
66 TAAGTGCAGGCTACTATGCATACCCAATAGCTTCAA
* *
137178714 TCACGTGTGTAGTACTAATTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
* *
137178779 TAAGTGCAGGCTACTATGCGTACCCAATAGCTTTAA
66 TAAGTGCAGGCTACTATGCATACCCAATAGCTTCAA
* * * * * *
137178815 TCACGTGTGTAGTACTAAGTGCAGGGTACTTCGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
137178880 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
137178896 CGTGTATCAG
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
100 78 0.47
101 87 0.53
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCAATAGCTTCAA
Done.