Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 447 of 770
Found at i:137566471 original size:15 final size:14
Alignment explanation
Indices: 137566451--137566495 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
137566441 TATGATATGG
137566451 AAATATGACATGAGA
1 AAATATGACATGA-A
137566466 AAATATGACATGAA
1 AAATATGACATGAA
*
137566480 AGAATATTACATGAA
1 A-AATATGACATGAA
137566495 A
1 A
137566496 TTCAAGAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.22
Consensus pattern (14 bp):
AAATATGACATGAA
Found at i:137577999 original size:29 final size:27
Alignment explanation
Indices: 137577965--137578067 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
137577955 TACTCAATCA
*
137577965 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
137577994 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
137578023 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
137578052 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
137578068 ATTTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:137581679 original size:40 final size:39
Alignment explanation
Indices: 137581514--137581697 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
137581504 AAATTGAATG
* * *
137581514 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
137581554 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
137581594 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
137581634 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
137581673 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
137581698 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:137581722 original size:80 final size:81
Alignment explanation
Indices: 137581554--137581742 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
137581544 GCTGGAAATT
* * * *
137581554 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
137581619 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
137581635 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
137581698 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
137581714 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
137581743 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:137585868 original size:28 final size:28
Alignment explanation
Indices: 137585799--137585899 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
137585789 GACAAGATTG
* * * *
137585799 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
137585829 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
137585857 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
137585886 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
137585900 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:137593826 original size:28 final size:28
Alignment explanation
Indices: 137593757--137593857 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
137593747 GACAAGATTG
* * * *
137593757 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
137593787 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
137593815 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
137593844 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
137593858 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:137605567 original size:29 final size:29
Alignment explanation
Indices: 137605525--137605606 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
137605515 TTATTTTTTT
137605525 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
137605554 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
137605583 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
137605607 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:137606034 original size:1 final size:1
Alignment explanation
Indices: 137606028--137606053 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
137606018 ATATGACCCA
137606028 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
137606054 ACCCCATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:137623468 original size:39 final size:39
Alignment explanation
Indices: 137623381--137623572 Score: 285
Period size: 39 Copynumber: 4.9 Consensus size: 39
137623371 TATGGTAACC
** * *
137623381 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
137623421 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
137623460 CGCCCAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
137623499 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
137623538 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
137623573 TCGAACATTC
Statistics
Matches: 140, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 125 0.89
40 15 0.11
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:137623552 original size:117 final size:119
Alignment explanation
Indices: 137623350--137623571 Score: 340
Period size: 117 Copynumber: 1.9 Consensus size: 119
137623340 TCGTTCAAAC
* **
137623350 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
*
137623415 ACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
66 ACAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
* * ** *
137623469 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
*
137623532 ACAATTCGCACATTTGCCTTCGGGCTTAGCCCGGATATCA
66 ACAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
137623572 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
117 52 0.56
118 32 0.34
119 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (119 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
ACAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
Found at i:137625790 original size:40 final size:40
Alignment explanation
Indices: 137625746--137625826 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
137625736 TTCTTACCAC
137625746 AAGCTCATCATATTTCATGTCATTCACATGAG-TACGATGT
1 AAGCTCATCATATTTCATGTCATTCACATGAGCT-CGATGT
137625786 AAGCTCATCATATTTCATGTCATTCACATGAGCTCGATGT
1 AAGCTCATCATATTTCATGTCATTCACATGAGCTCGATGT
137625826 A
1 A
137625827 CATACCTGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (40 bp):
AAGCTCATCATATTTCATGTCATTCACATGAGCTCGATGT
Found at i:137629415 original size:71 final size:71
Alignment explanation
Indices: 137629331--137629494 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
137629321 CGATTTGTCT
137629331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
137629396 CTTTCA
66 CTTTCA
137629402 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
137629467 CTTTCA
66 CTTTCA
137629473 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
137629495 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:137629532 original size:71 final size:70
Alignment explanation
Indices: 137629331--137629528 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
137629321 CGATTTGTCT
* * * *
137629331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
137629396 CTTTCA
65 CTTTCA
* * * *
137629402 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
137629467 CTTTCA
65 CTTTCA
* *
137629473 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
137629529 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:137636446 original size:71 final size:71
Alignment explanation
Indices: 137636362--137636525 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
137636352 CGATTTGTCT
137636362 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
137636427 CTTTCA
66 CTTTCA
137636433 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
137636498 CTTTCA
66 CTTTCA
137636504 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
137636526 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:137636563 original size:71 final size:70
Alignment explanation
Indices: 137636362--137636559 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
137636352 CGATTTGTCT
* * * *
137636362 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
137636427 CTTTCA
65 CTTTCA
* * * *
137636433 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
137636498 CTTTCA
65 CTTTCA
* *
137636504 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
137636560 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:137638008 original size:54 final size:54
Alignment explanation
Indices: 137637922--137638028 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
137637912 TGACTGCCAG
* *
137637922 AACAGATATTGTGACAGAGTCACTAGATACAGAT-ATTGTGGCAGAGCCACCAA
1 AACAGATATTGTGACAGAGCCACTAGAAACAGATAATTGTGGCAGAGCCACCAA
* * *
137637975 AACAGATATCTGTGGCATAGCCACTAGAAACAGATAATTGTGGCATAGCCACCA
1 AACAGATAT-TGTGACAGAGCCACTAGAAACAGATAATTGTGGCAGAGCCACCA
137638029 GAACGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 9 0.19
54 21 0.45
55 17 0.36
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (54 bp):
AACAGATATTGTGACAGAGCCACTAGAAACAGATAATTGTGGCAGAGCCACCAA
Found at i:137638016 original size:28 final size:27
Alignment explanation
Indices: 137637918--137638031 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
137637908 AGCATGACTG
* *
137637918 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
* *
137637944 CTAGATACAGATATTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
*
137637971 CCA-AAACAGATATCTGTGGCATAGCCA
1 CCAGAAACAGATAT-TGTGGCAGAGCCA
* *
137637998 CTAGAAACAGATAATTGTGGCATAGCCA
1 CCAGAAACAGAT-ATTGTGGCAGAGCCA
137638026 CCAGAA
1 CCAGAA
137638032 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.16
27 35 0.47
28 26 0.35
29 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:137638196 original size:27 final size:28
Alignment explanation
Indices: 137638134--137638199 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
137638124 CAAAATTAAC
* *
137638134 CTTAGGGGTATAATGGTCATTTTGCATA
1 CTTAGGGGTATAATGGTAATTGTGCATA
137638162 CTTAGGGGTATAATGGTAATTGT-CATA
1 CTTAGGGGTATAATGGTAATTGTGCATA
137638189 CTTAGGGGTAT
1 CTTAGGGGTAT
137638200 TTTAGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.42
28 21 0.58
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.38
Consensus pattern (28 bp):
CTTAGGGGTATAATGGTAATTGTGCATA
Found at i:137641370 original size:40 final size:40
Alignment explanation
Indices: 137641269--137641510 Score: 359
Period size: 40 Copynumber: 6.1 Consensus size: 40
137641259 TGATAACCAA
* * *
137641269 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCTGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGG
137641309 GCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
137641348 GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAGCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
137641388 GCTAAGTCCCG-AGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
137641427 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
137641467 GCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
137641506 GCTAA
1 GCTAA
137641511 ACTCTGAAGG
Statistics
Matches: 187, Mismatches: 11, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
39 79 0.42
40 108 0.58
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:137641501 original size:119 final size:118
Alignment explanation
Indices: 137641269--137641510 Score: 355
Period size: 119 Copynumber: 2.0 Consensus size: 118
137641259 TGATAACCAA
* *
137641269 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGA
* * **
137641334 GTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAGCCGG
66 GTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAGCC-G
*
137641388 GCTAAGTCCCG-AGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTGTGC
*
137641451 GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCCG
64 GAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CTATAGCCG
137641506 GCTAA
1 GCTAA
137641511 ACTCTGAAGG
Statistics
Matches: 112, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
117 2 0.02
118 36 0.32
119 74 0.66
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (118 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGA
GTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACTATAGCCG
Found at i:137641520 original size:79 final size:80
Alignment explanation
Indices: 137641269--137641510 Score: 359
Period size: 79 Copynumber: 3.1 Consensus size: 80
137641259 TGATAACCAA
* * * *
137641269 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAG-CCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGC
137641332 GAGTTACTATATCCGG
65 GAGTTACTATATCCGG
* *
137641348 GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAGCCGGGCTAAGTCCCG-AGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCG
137641412 AGTTACTATATCCGG
66 AGTTACTATATCCGG
* *
137641427 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCG
137641492 AG-TAGCTATATCC-G
66 AGTTA-CTATATCCGG
137641506 GCTAA
1 GCTAA
137641511 ACTCTGAAGG
Statistics
Matches: 150, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
79 124 0.83
80 26 0.17
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCG
AGTTACTATATCCGG
Found at i:137645980 original size:40 final size:39
Alignment explanation
Indices: 137645935--137646064 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
137645925 CGGAATATAA
137645935 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
137645975 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
137646015 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
137646055 CCGGATATAA
1 CCGGATATAA
137646065 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:137646079 original size:40 final size:40
Alignment explanation
Indices: 137645951--137646102 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
137645941 ATAACCATGT
* * *
137645951 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
137645991 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
137646031 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
137646071 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
137646103 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:137646085 original size:80 final size:80
Alignment explanation
Indices: 137645951--137646100 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
137645941 ATAACCATGT
*
137645951 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
137646015 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
137646031 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
137646094 CCCGGAT
64 CCCGGAT
137646101 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:137653981 original size:38 final size:37
Alignment explanation
Indices: 137653928--137654038 Score: 120
Period size: 37 Copynumber: 2.9 Consensus size: 37
137653918 GGATATAACC
137653928 ATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-A
1 ATGTGCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCA
137653965 ATGTCGCACGAATGCC-TCGGGTCTTAGCCCGGATTAGCCA
1 ATGT-GCAC-AATGCCTTCGGGTCTTAGCCCGGA-TAG-CA
* * *
137654005 CT-AGCACAATTGCCTTCGGGTCTTAACCCGGATA
1 ATGTGCACAA-TGCCTTCGGGTCTTAGCCCGGATA
137654039 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
37 23 0.36
38 23 0.36
39 16 0.25
40 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (37 bp):
ATGTGCACAATGCCTTCGGGTCTTAGCCCGGATAGCA
Found at i:137653987 original size:37 final size:37
Alignment explanation
Indices: 137653928--137654038 Score: 127
Period size: 38 Copynumber: 2.9 Consensus size: 37
137653918 GGATATAACC
137653928 ATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGA
1 ATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGA
*
137653965 ATGTCGCACGAATGCC-TCGGGTCTTAGCCCGGATTAGCCA
1 ATGT-GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAG--A
* * * *
137654005 CT-AGCACAATTGCCTTCGGGTCTTAACCCGGATA
1 ATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATA
137654039 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
37 21 0.33
38 24 0.38
39 16 0.25
40 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (37 bp):
ATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGA
Found at i:137657960 original size:40 final size:39
Alignment explanation
Indices: 137657795--137657978 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
137657785 AAATTGAATG
* * *
137657795 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
137657835 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
137657875 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
137657915 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
137657954 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
137657979 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:137658003 original size:80 final size:81
Alignment explanation
Indices: 137657835--137658023 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
137657825 GCTGGAAATT
* * * *
137657835 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
137657900 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
137657916 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
137657979 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
137657995 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
137658024 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:137663637 original size:48 final size:48
Alignment explanation
Indices: 137663491--137663710 Score: 212
Period size: 48 Copynumber: 4.6 Consensus size: 48
137663481 ATGTGAGTAT
*
137663491 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
1 TGAGATCTCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
* * *
137663539 AGAGATCTTGTATAAGACCATATCTGGGATATGGCATCAACATC-AGTA
1 TGAGATCTCGTGTAAGACCATATCTGGGATATGGCATCAACATCGA-TA
* * ***
137663587 TGAGATCTCATGTGAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGAGATCTCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
* * * * * * * * *
137663635 TGA-AGTCCCGTATAAGACCATGTTTGGGACATGGAATCAGCACCGTTA
1 TGAGA-TCTCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
* *
137663683 TAAGA-CTTCGTGTAAGACCATAGCTGGG
1 TGAGATC-TCGTGTAAGACCATATCTGGG
137663711 TTGTTGGCAT
Statistics
Matches: 137, Mismatches: 30, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
47 3 0.02
48 132 0.96
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (48 bp):
TGAGATCTCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATA
Found at i:137663701 original size:96 final size:96
Alignment explanation
Indices: 137663493--137663759 Score: 271
Period size: 96 Copynumber: 2.8 Consensus size: 96
137663483 GTGAGTATTG
* *** * **
137663493 AGATCCCGTGTAAGACCATATCTGGGATATGGCATCAACATCGATAAGAGATCTTGTATAAGACC
1 AGATCTCGTGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTATAAGACC
* * * * *
137663558 ATATCTGGGATATGGCATCAACATCAGTATG
66 ATGTTTGGGACATGGAATCAACATCAGTATA
* *
137663589 AGATCTCATGTGAGACCATATCTGGGATATGGCATTGGCATCGATATGA-AGTCCCGTATAAGAC
1 AGATCTCGTGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGA-TCCCGTATAAGAC
* *
137663653 CATGTTTGGGACATGGAATCAGCA-CCGTTATA
65 CATGTTTGGGACATGGAATCAACATCAG-TATA
* * *
137663685 AGA-CTTCGTGTAAGACCATAGCTGGG-T-T-G--TTGGCATCGATGTGAGATCCCGTGTAAGAC
1 AGATC-TCGTGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTATAAGAC
*
137663744 CACGTTTGGGACATGG
65 CATGTTTGGGACATGG
137663760 CATTGGCATC
Statistics
Matches: 145, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
91 41 0.28
92 1 0.01
93 1 0.01
94 1 0.01
95 5 0.03
96 96 0.66
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (96 bp):
AGATCTCGTGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTATAAGACC
ATGTTTGGGACATGGAATCAACATCAGTATA
Found at i:137669424 original size:29 final size:29
Alignment explanation
Indices: 137669390--137669671 Score: 173
Period size: 29 Copynumber: 9.7 Consensus size: 29
137669380 TATTAGCGAT
*
137669390 CATCGAATATGAAAAGGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * * * *
137669419 TATCGATTATGAAAAGTGATGGTGACAAC
1 CATCGAATATGAAAAGGGATGCTGTCGAC
*
137669448 CATC-AACTATGAAAAGGGATGGTGAT-GAC
1 CATCGAA-TATGAAAAGGGATGCTG-TCGAC
* *
137669477 CATCAAATATGAAAAGGGATGGTGAT-GAC
1 CATCGAATATGAAAAGGGATGCTG-TCGAC
* * *
137669506 CATTGAATATGAAAAGGGGTAGCT-TTGAC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * *
137669535 TATCGAAAATGAAAAAGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * * *
137669564 TATTGATTATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGCTGTCGAC
* * * *
137669593 CATC-AACTATGGAAAGGGATGGTGACAAC
1 CATCGAA-TATGAAAAGGGATGCTGTCGAC
* * *
137669622 CATCGATTAATGAAAAGGGATGATTTCGAC
1 CATCGAAT-ATGAAAAGGGATGCTGTCGAC
*
137669652 CATCAAATATGAAAAGGGAT
1 CATCGAATATGAAAAGGGAT
137669672 AGTTACAACC
Statistics
Matches: 200, Mismatches: 43, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
28 7 0.04
29 166 0.83
30 27 0.14
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.23
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGCTGTCGAC
Found at i:137669667 original size:116 final size:117
Alignment explanation
Indices: 137669455--137669673 Score: 293
Period size: 116 Copynumber: 1.9 Consensus size: 117
137669445 AACCATCAAC
* ** *
137669455 TATGAAAAGGGATGGTGATGACCATCAAATATGAAAAGGGATGGTGATGACCATTGAATATGAAA
1 TATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAATATGAAA
* * *
137669520 AGGGGTAGCTTTGACTATCGAAAATGAAAAA-GGATAGCTTCGGCTATTGAT
66 AGGGATAGATTTGACCATCGAAAATGAAAAAGGGATAGCTTCGGCTATTGAT
* * *
137669571 TATGAAAAGGGATGGTGACGACCATCAACTATGGAAAGGGATGGTGACAACCATCGATTAATGAA
1 TATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAAT-ATGAA
137669636 AAGGGAT-GATTTCGACCATC-AAATATG-AAAAGGGATAG
65 AAGGGATAGATTT-GACCATCGAAA-ATGAAAAAGGGATAG
137669674 TTACAACCAT
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
116 63 0.71
117 26 0.29
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.23
Consensus pattern (117 bp):
TATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAATATGAAA
AGGGATAGATTTGACCATCGAAAATGAAAAAGGGATAGCTTCGGCTATTGAT
Found at i:137669684 original size:29 final size:29
Alignment explanation
Indices: 137669426--137669671 Score: 183
Period size: 29 Copynumber: 8.4 Consensus size: 29
137669416 GGCTATCGAT
* * *
137669426 TATGAAAAGTGATGGTGACAACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAA
*
137669455 TATGAAAAGGGATGGTGATGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCAAA
* **
137669484 TATGAAAAGGGATGGTGATGACCATTGAA
1 TATGAAAAGGGATGGTGACGACCATCAAA
* * ** *
137669513 TATGAAAAGGGGTAGCT-TTGACTATCGAAA
1 TATGAAAAGGGAT-GGTGACGACCATC-AAA
* * * * * ** *
137669543 -ATGAAAAAGGATAGCT-TCGGCTATTGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAA
*
137669571 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAA
* * * *
137669600 TATGGAAAGGGATGGTGACAACCATCGAT
1 TATGAAAAGGGATGGTGACGACCATCAAA
* **
137669629 TAATGAAAAGGGATGATTTCGACCATCAAA
1 T-ATGAAAAGGGATGGTGACGACCATCAAA
137669659 TATGAAAAGGGAT
1 TATGAAAAGGGAT
137669672 AGTTACAACC
Statistics
Matches: 174, Mismatches: 38, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.02
29 145 0.83
30 26 0.15
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAA
Found at i:137676181 original size:20 final size:20
Alignment explanation
Indices: 137676153--137676190 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
137676143 CTAGGAACTA
137676153 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
137676173 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
137676191 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:137679464 original size:18 final size:19
Alignment explanation
Indices: 137679434--137679470 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
137679424 AAGATAGCCT
137679434 AAAAAGTGCAAAA-GAAAA
1 AAAAAGTGCAAAAGGAAAA
137679452 AAAAAGT-CAAAAAGGAAAA
1 AAAAAGTGC-AAAAGGAAAA
137679471 TTACACAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 11 0.65
19 5 0.29
ACGTcount: A:0.73, C:0.05, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAAGTGCAAAAGGAAAA
Found at i:137683220 original size:2 final size:2
Alignment explanation
Indices: 137683213--137683238 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
137683203 GGCGGAATAC
137683213 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
137683239 TATCAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:137684574 original size:14 final size:15
Alignment explanation
Indices: 137684557--137684585 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
137684547 TTACGAAAAT
137684557 TTCACACAT-ATAAA
1 TTCACACATAATAAA
137684571 TTCACACATAATAAA
1 TTCACACATAATAAA
137684586 CACCAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:137686181 original size:13 final size:13
Alignment explanation
Indices: 137686163--137686187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137686153 ACAAATGATA
137686163 AAATTTTCACACG
1 AAATTTTCACACG
137686176 AAATTTTCACAC
1 AAATTTTCACAC
137686188 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:137692372 original size:19 final size:19
Alignment explanation
Indices: 137692348--137692461 Score: 174
Period size: 19 Copynumber: 5.8 Consensus size: 19
137692338 AATCTTTAAG
137692348 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
137692367 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
137692386 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
137692405 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
137692424 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
137692445 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
137692462 GATTTAATTT
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
19 68 0.77
20 3 0.03
21 9 0.10
22 8 0.09
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:137695695 original size:13 final size:13
Alignment explanation
Indices: 137695677--137695701 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137695667 ACAAATGATA
137695677 AAATTTTCACACG
1 AAATTTTCACACG
137695690 AAATTTTCACAC
1 AAATTTTCACAC
137695702 ATATCACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:137700229 original size:27 final size:26
Alignment explanation
Indices: 137700188--137700299 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
137700178 AGGAAGCGTC
*
137700188 CTGGTGGCTAC-GCCACAATTATATGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
*
137700215 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
137700242 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
137700270 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
137700296 CTGG
1 CTGG
137700300 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:137700292 original size:54 final size:54
Alignment explanation
Indices: 137700188--137700299 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
137700178 AGGAAGCGTC
*
137700188 CTGGTGGCTACGCCACAATTATATGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATATGATCTGGTGACTCTGCCACATATATCTGTT
* * *
137700242 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATATG-ATCTGGTGACTCTGCCACATATATCTGTT
137700296 CTGG
1 CTGG
137700300 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATATGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:137704319 original size:46 final size:46
Alignment explanation
Indices: 137704252--137704380 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
137704242 TGTAACCCGC
* * * *
137704252 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
137704298 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
137704344 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
137704381 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:137716168 original size:14 final size:14
Alignment explanation
Indices: 137716149--137716177 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
137716139 ACAGATGGAT
137716149 TCGTATAATTCTTA
1 TCGTATAATTCTTA
137716163 TCGTATAATTCTTA
1 TCGTATAATTCTTA
137716177 T
1 T
137716178 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:137720410 original size:20 final size:21
Alignment explanation
Indices: 137720344--137720412 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
137720334 TCACTTCGTT
137720344 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
137720365 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
137720386 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
137720407 -CTTTTT
1 TCTTTTT
137720413 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:137722811 original size:18 final size:18
Alignment explanation
Indices: 137722778--137722871 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
137722768 AAGGTTTTCT
137722778 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
137722793 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
137722811 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
137722829 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
137722847 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
137722865 TATTGAT
1 TATTGAT
137722872 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:137731138 original size:14 final size:14
Alignment explanation
Indices: 137731119--137731146 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
137731109 TATATTAGTA
137731119 TTTTCTATTCTATT
1 TTTTCTATTCTATT
137731133 TTTTCTATTCTATT
1 TTTTCTATTCTATT
137731147 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:137731154 original size:6 final size:6
Alignment explanation
Indices: 137731143--137731221 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
137731133 TTTTCTATTC
* *
137731143 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
137731190 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
137731222 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:137731169 original size:11 final size:11
Alignment explanation
Indices: 137731144--137731225 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
137731134 TTTCTATTCT
137731144 ATTAGTATTAG
1 ATTAGTATTAG
137731155 ---AGTATTAG
1 ATTAGTATTAG
**
137731163 ATTAGTATTCT
1 ATTAGTATTAG
*
137731174 ATT-CTATTAG
1 ATTAGTATTAG
137731184 TATTAG-ATTAG
1 -ATTAGTATTAG
137731195 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
137731210 ATTAGTATTAG
1 ATTAGTATTAG
137731221 -TTAGT
1 ATTAGT
137731226 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:137731210 original size:20 final size:21
Alignment explanation
Indices: 137731180--137731225 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
137731170 TTCTATTCTA
137731180 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
137731201 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
137731221 TTAGT
1 TTAGT
137731226 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:137739438 original size:32 final size:32
Alignment explanation
Indices: 137739397--137739458 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
137739387 CATCTATTTT
137739397 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
137739429 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
137739459 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:137743602 original size:22 final size:22
Alignment explanation
Indices: 137743576--137743619 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
137743566 TTATCTCTTT
137743576 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
137743598 TGATTGAAAAGGAGCAATAAAA
1 TGATTGAAAAGGAGCAATAAAA
137743620 AAATCGAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.23, T:0.18
Consensus pattern (22 bp):
TGATTGAAAAGGAGCAATAAAA
Found at i:137745104 original size:15 final size:16
Alignment explanation
Indices: 137745084--137745113 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
137745074 TTTATTCAAT
137745084 TTAAATAATA-AATAA
1 TTAAATAATAGAATAA
137745099 TTAAATAATAGAATA
1 TTAAATAATAGAATA
137745114 TAATAGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TTAAATAATAGAATAA
Found at i:137745875 original size:21 final size:21
Alignment explanation
Indices: 137745851--137745894 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
137745841 ACGACCTAAT
*
137745851 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
137745872 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
137745893 TA
1 TA
137745895 CTAAAGATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:137755817 original size:13 final size:13
Alignment explanation
Indices: 137755799--137755826 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
137755789 AATATAGGGG
137755799 AAAATGTACCATT
1 AAAATGTACCATT
137755812 AAAATGTACCATT
1 AAAATGTACCATT
137755825 AA
1 AA
137755827 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:137763158 original size:32 final size:32
Alignment explanation
Indices: 137763122--137763183 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
137763112 AGCTTTTGGT
137763122 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
137763154 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
137763184 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:137770134 original size:27 final size:28
Alignment explanation
Indices: 137770104--137770203 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
137770094 ATAGTGAGTC
137770104 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
137770131 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
137770159 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
137770190 CGCACACTTAGTGC
1 CGCACACTTAGTGC
137770204 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:137771053 original size:7 final size:7
Alignment explanation
Indices: 137771043--137771067 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
137771033 TCATCACCAC
137771043 AACATCA
1 AACATCA
137771050 AACATCA
1 AACATCA
137771057 AACATCA
1 AACATCA
137771064 AACA
1 AACA
137771068 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:137777988 original size:27 final size:28
Alignment explanation
Indices: 137777958--137778057 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
137777948 ATAGTGAGTC
137777958 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
137777985 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
137778013 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
137778044 CGCACACTTAGTGC
1 CGCACACTTAGTGC
137778058 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:137778910 original size:7 final size:7
Alignment explanation
Indices: 137778900--137778924 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
137778890 TCATCACCAC
137778900 AACATCA
1 AACATCA
137778907 AACATCA
1 AACATCA
137778914 AACATCA
1 AACATCA
137778921 AACA
1 AACA
137778925 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:137780205 original size:13 final size:13
Alignment explanation
Indices: 137780189--137780221 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
137780179 TTATTTCTTT
137780189 TTCTCCATCTACC
1 TTCTCCATCTACC
*
137780202 TTCT-CATCTTCC
1 TTCTCCATCTACC
137780214 TTCTCCAT
1 TTCTCCAT
137780222 AGTCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.12, C:0.42, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:137781317 original size:28 final size:28
Alignment explanation
Indices: 137781286--137781350 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
137781276 ATTTACTAGA
* * *
137781286 ATACCCCTATGTATGCAAATTTACCATT
1 ATACCCCTATGCATGCAAAATGACCATT
* *
137781314 ATACCCCTATGCGTGCAAAATGACCTTT
1 ATACCCCTATGCATGCAAAATGACCATT
137781342 ATACCCCTA
1 ATACCCCTA
137781351 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGCATGCAAAATGACCATT
Found at i:137781496 original size:28 final size:27
Alignment explanation
Indices: 137781456--137781545 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 27
137781446 AGGAAGCGTC
137781456 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCCCTGCCACAAA-TATCTGTT
**
137781484 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCCCTGCCACAAATATCTGTT
* *
137781511 CTAGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCCCTGCCAC-AAATATCTGT-T
137781540 CTGGTG
1 CTGGTG
137781546 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 22 0.42
28 25 0.47
29 6 0.11
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCCCTGCCACAAATATCTGTT
Found at i:137781517 original size:27 final size:28
Alignment explanation
Indices: 137781459--137781537 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 28
137781449 AAGCGTCCTG
*
137781459 GTGGCCCTGCCACAAATTATCTGTTCTG
1 GTGGCCCTGCCACAAATTATCTGTTCTA
**
137781487 GTGGCCCTGCCACGTA-TATCTGTTCTA
1 GTGGCCCTGCCACAAATTATCTGTTCTA
* *
137781514 GTGGCACTGCCACAAAATATCTGT
1 GTGGCCCTGCCACAAATTATCTGT
137781538 ATCTGGTGAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (28 bp):
GTGGCCCTGCCACAAATTATCTGTTCTA
Found at i:137787508 original size:40 final size:38
Alignment explanation
Indices: 137787451--137787671 Score: 232
Period size: 40 Copynumber: 5.7 Consensus size: 38
137787441 TCGAATGATG
* * *
137787451 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
137787491 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACT-AA
137787531 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* *
137787570 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACT-AA
** * *
137787609 TCCGGGTTAAGTCCTGAAGGCATTTGTACGAGCTACT-A
1 TCCGGACTAAGTCC-GAAGGCATTTGTGCGAGTTACTAA
* * *
137787647 TAACGG-CTATGTCCCAAGGCATTTG
1 T-CCGGACTAAGTCCGAAGGCATTTG
137787672 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
37 10 0.06
38 32 0.20
39 29 0.18
40 82 0.51
41 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (38 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:137787599 original size:78 final size:79
Alignment explanation
Indices: 137787451--137787648 Score: 267
Period size: 78 Copynumber: 2.5 Consensus size: 79
137787441 TCGAATGATG
* * *
137787451 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGACCCGAAGGCATT
137787515 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* *
137787531 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGACCCGAAGGCATTT
137787594 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* * *
137787609 TCCGGGTTAAGTCCTGAAGGCATTTGTACGAGCTACTATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATA
137787649 ACGGCTATGT
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 57 0.54
79 12 0.11
80 25 0.24
81 8 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGACCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:137795637 original size:40 final size:39
Alignment explanation
Indices: 137795580--137795801 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 39
137795570 TCGAATGATG
* * *
137795580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
137795620 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
137795660 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
137795699 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
137795737 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
137795777 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
137795802 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
37 24 0.14
38 12 0.07
39 40 0.24
40 84 0.50
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:137795727 original size:77 final size:79
Alignment explanation
Indices: 137795580--137795801 Score: 310
Period size: 77 Copynumber: 2.8 Consensus size: 79
137795570 TCGAATGATG
* * *
137795580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
137795644 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
*
137795660 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAG-CCGAAGGCATTT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTT
137795722 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* * *
137795737 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTT
137795801 G
65 G
137795802 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
76 6 0.05
77 65 0.51
79 24 0.19
80 25 0.20
81 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:137795820 original size:117 final size:118
Alignment explanation
Indices: 137795580--137795808 Score: 290
Period size: 117 Copynumber: 1.9 Consensus size: 118
137795570 TCGAATGATG
*
137795580 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
**
137795645 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
65 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAA
* * **
137795699 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* *
137795761 TGTGCGAG-TACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
64 TGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
137795809 AGCTATATCC
Statistics
Matches: 97, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
115 1 0.01
116 32 0.33
117 46 0.47
118 7 0.07
119 11 0.11
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAA
Found at i:137795831 original size:77 final size:76
Alignment explanation
Indices: 137795593--137795833 Score: 283
Period size: 77 Copynumber: 3.1 Consensus size: 76
137795583 GGGCTAAGTC
* *
137795593 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGC-GAGT-ACTATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
*
137795657 AAATCCGGACTAAGAT
63 AAATCCGG-TTAA-AT
137795673 CCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
*
137795736 ATCCGGGTTAAGT
65 ATCC-GGTTAAAT
* * **
137795749 CCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 -CCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CT
*
137795813 ATATCCGGTTAAAT
63 AAATCCGGTTAAAT
137795827 CCGAAGG
1 CCGAAGG
137795834 TACGTGATTC
Statistics
Matches: 143, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
76 6 0.04
77 69 0.48
78 11 0.08
79 35 0.24
80 14 0.10
81 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
TCCGGTTAAAT
Found at i:137799360 original size:12 final size:13
Alignment explanation
Indices: 137799332--137799364 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
137799322 TTATTTCTTT
137799332 TTCTCCATCTACC
1 TTCTCCATCTACC
*
137799345 TTCTCC-TCTTCC
1 TTCTCCATCTACC
137799357 TTCTCCAT
1 TTCTCCAT
137799365 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:137800475 original size:28 final size:27
Alignment explanation
Indices: 137800423--137800479 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
137800413 TACTAGAATA
*
137800423 CCCTATGTATGAAAATTACCATTATAC
1 CCCTATGTATGAAAATGACCATTATAC
* *
137800450 CCCTATGTGTGCAAAATGACCTTTATAC
1 CCCTATGTATG-AAAATGACCATTATAC
137800478 CC
1 CC
137800480 TAGGGTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (27 bp):
CCCTATGTATGAAAATGACCATTATAC
Found at i:137800480 original size:27 final size:26
Alignment explanation
Indices: 137800420--137800481 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
137800410 ATTTACTAGA
*
137800420 ATACCCTATGTATGAAAATTACCATT
1 ATACCCTATGTATGAAAATGACCATT
* *
137800446 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATA-CCCTATGTATG-AAAATGACCATT
137800474 ATACCCTA
1 ATACCCTA
137800482 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.10
27 15 0.48
28 13 0.42
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (26 bp):
ATACCCTATGTATGAAAATGACCATT
Found at i:137800644 original size:27 final size:28
Alignment explanation
Indices: 137800586--137800675 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
137800576 AGGAAGCGTC
*
137800586 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
137800614 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
137800641 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
137800670 CTGGTG
1 CTGGTG
137800676 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:137800686 original size:29 final size:28
Alignment explanation
Indices: 137800596--137800686 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
137800586 CTGGTGGCTA
* * *
137800596 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
137800624 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
137800651 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
137800680 TGTCACA
1 TGCCACA
137800687 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:137800694 original size:55 final size:56
Alignment explanation
Indices: 137800586--137800700 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
137800576 AGGAAGCGTC
* * *
137800586 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
137800641 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
137800697 CTGG
1 CTGG
137800701 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:137803825 original size:43 final size:42
Alignment explanation
Indices: 137803759--137803876 Score: 150
Period size: 42 Copynumber: 2.8 Consensus size: 42
137803749 AGCTCGTACA
* *
137803759 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCAAATA-CG
* * *
137803802 ATGCCACTGTCCCAGACAAGGTCTCACACGAAATCAAATACG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAATACG
137803844 ATGCCA-TCGTCCCAGACATGGTCTTACACGTAA
1 ATGCCACT-GTCCCAGACATGGTCTTACACGTAA
137803877 ATCATAAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 32 0.49
43 32 0.49
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAATACG
Found at i:137803879 original size:43 final size:43
Alignment explanation
Indices: 137803759--137803901 Score: 161
Period size: 43 Copynumber: 3.3 Consensus size: 43
137803749 AGCTCGTACA
* *
137803759 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* *
137803802 ATGCCACTGTCCCAGACAAGGTCTCACACG-AAATCAAATA-CG
1 ATGCCAC-GTCCCAGACATGGTCTTACACGTAAATCAAATATCG
137803844 ATGCCATCGTCCCAGACATGGTCTTACACGTAAATCATAAGT-T-G
1 ATGCCA-CGTCCCAGACATGGTCTTACACGTAAATCA-AA-TATCG
137803888 ATGCCAACGTCCCA
1 ATGCC-ACGTCCCA
137803902 AATGTGGTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
42 30 0.35
43 39 0.45
44 15 0.17
45 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGCCACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:137804075 original size:2 final size:2
Alignment explanation
Indices: 137804068--137804092 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
137804058 ATACAATGAC
137804068 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
137804093 AATCAATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:137807974 original size:40 final size:40
Alignment explanation
Indices: 137807872--137808055 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
137807862 AAATTGAATG
* * * * *
137807872 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
137807912 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
137807952 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
137807992 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
137808032 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
137808056 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:137816087 original size:40 final size:40
Alignment explanation
Indices: 137815985--137816168 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
137815975 AAATTGAATG
* * * * *
137815985 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
137816025 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
137816065 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
137816105 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
137816145 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
137816169 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:137824146 original size:39 final size:40
Alignment explanation
Indices: 137824088--137824188 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
137824078 AAATTGAATG
* *
137824088 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
137824127 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
137824167 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
137824189 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:137824181 original size:40 final size:40
Alignment explanation
Indices: 137824088--137824270 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
137824078 AAATTGAATG
* * * * *
137824088 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
137824127 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
137824167 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
137824207 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
137824247 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
137824271 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:137830258 original size:29 final size:28
Alignment explanation
Indices: 137830224--137830326 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
137830214 TAATCGATCA
*
137830224 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
137830253 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
137830282 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
137830311 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
137830327 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:137838184 original size:29 final size:28
Alignment explanation
Indices: 137838150--137838252 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
137838140 TAATCGATCA
*
137838150 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
137838179 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
137838208 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
137838237 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
137838253 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:137842027 original size:26 final size:26
Alignment explanation
Indices: 137841996--137842046 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137841986 AAATTAATGC
137841996 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137842022 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137842047 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137844129 original size:26 final size:26
Alignment explanation
Indices: 137844100--137844150 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137844090 AAATTAATGC
137844100 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137844126 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137844151 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137846424 original size:19 final size:19
Alignment explanation
Indices: 137846400--137846486 Score: 142
Period size: 19 Copynumber: 4.7 Consensus size: 19
137846390 TAATATCTTC
*
137846400 AAGATTGCATATCATATCA
1 AAGATTGCATATCATATCT
137846419 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
137846438 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
*
137846455 AAGATTGCATATCATTTCT
1 AAGATTGCATATCATATCT
137846474 AAGATTGCATATC
1 AAGATTGCATATC
137846487 CTTAAAGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
17 17 0.27
19 47 0.73
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:137846451 original size:36 final size:37
Alignment explanation
Indices: 137846400--137846486 Score: 131
Period size: 36 Copynumber: 2.3 Consensus size: 37
137846390 TAATATCTTC
137846400 AAGATTGCATATCATATCAAAGATTGCATATCATATCT
1 AAGATTG-ATATCATATCAAAGATTGCATATCATATCT
* *
137846438 AAGATTG-TATCATATCTAAGATTGCATATCATTTCT
1 AAGATTGATATCATATCAAAGATTGCATATCATATCT
137846474 AAGATTGCATATC
1 AAGATTG-ATATC
137846487 CTTAAAGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 34 0.76
38 11 0.24
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
AAGATTGATATCATATCAAAGATTGCATATCATATCT
Found at i:137846467 original size:14 final size:15
Alignment explanation
Indices: 137846430--137846467 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
137846420 AGATTGCATA
137846430 TCATATCTAAGATTG
1 TCATATCTAAGATTG
137846445 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
137846462 -CATATC
1 TCATATC
137846468 ATTTCTAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:137846495 original size:36 final size:36
Alignment explanation
Indices: 137846400--137846496 Score: 110
Period size: 36 Copynumber: 2.6 Consensus size: 36
137846390 TAATATCTTC
*
137846400 AAGATTGCATATCATATCAAAGATTGCATATCATATCT
1 AAGATTGCATATCCT-T-AAAGATTGCATATCATATCT
*
137846438 AAGATTGTATCATAT-C-T-AAGATTGCATATCATTTCT
1 AAGATTG---CATATCCTTAAAGATTGCATATCATATCT
137846474 AAGATTGCATATCCTTAAAGATT
1 AAGATTGCATATCCTTAAAGATT
137846497 ATATTTCCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
33 5 0.10
34 1 0.02
35 1 0.02
36 31 0.61
38 8 0.16
41 5 0.10
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (36 bp):
AAGATTGCATATCCTTAAAGATTGCATATCATATCT
Found at i:137846496 original size:17 final size:19
Alignment explanation
Indices: 137846396--137846496 Score: 83
Period size: 19 Copynumber: 5.6 Consensus size: 19
137846386 AAGATAATAT
137846396 CTTC-AAGATTGCATATCA
1 CTTCAAAGATTGCATATCA
137846414 -TATCAAAGATTGCATATCA
1 CT-TCAAAGATTGCATATCA
*
137846433 -TATCTAAGATTG--TATCA
1 CT-TCAAAGATTGCATATCA
*
137846450 -TATCTAAGATTGCATATCA
1 CT-TCAAAGATTGCATATCA
* *
137846469 TTTCTAAGATTGCATATC-
1 CTTCAAAGATTGCATATCA
137846487 CTT-AAAGATT
1 CTTCAAAGATT
137846497 ATATTTCCAT
Statistics
Matches: 75, Mismatches: 3, Indels: 11
0.84 0.03 0.12
Matches are distributed among these distances:
17 24 0.32
18 4 0.05
19 46 0.61
20 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
CTTCAAAGATTGCATATCA
Found at i:137850073 original size:26 final size:26
Alignment explanation
Indices: 137850044--137850095 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137850034 AAAATTAATG
137850044 CTAATTAAACTGAAATACTGAATGTT
1 CTAATTAAACTGAAATACTGAATGTT
* *
137850070 CTAATTAAATTGAAATATTGAATGTT
1 CTAATTAAACTGAAATACTGAATGTT
137850096 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATACTGAATGTT
Found at i:137851488 original size:2 final size:2
Alignment explanation
Indices: 137851481--137851505 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
137851471 TTTGGCCACA
137851481 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
137851506 CACATCTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:137851621 original size:47 final size:47
Alignment explanation
Indices: 137851569--137851810 Score: 364
Period size: 47 Copynumber: 5.2 Consensus size: 47
137851559 TTCCACGTTT
* *
137851569 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTT
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
* *
137851616 GTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
* *
137851663 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
*
137851710 ATCACATTGGCCATT-TGGCCTTATCAC-CATATGCATGTTCACACTC
1 ATCACATTGGCCATTCT-GCCTTATCACACATATGCATGTTCACATTC
* *
137851756 ATCACATTGGCCATT-TGGCCTTATCACATATATGCATGTCCACATTC
1 ATCACATTGGCCATTCT-GCCTTATCACACATATGCATGTTCACATTC
137851803 ATCACATT
1 ATCACATT
137851811 AAGTCCTAAA
Statistics
Matches: 181, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 44 0.24
47 137 0.76
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTCTGCCTTATCACACATATGCATGTTCACATTC
Found at i:137851784 original size:93 final size:94
Alignment explanation
Indices: 137851569--137851810 Score: 389
Period size: 93 Copynumber: 2.6 Consensus size: 94
137851559 TTCCACGTTT
* * **
137851569 ATCACATTGGCCATTCT-ACCTTATCACACATATGCATGTTCACATTTGTCACATTGGCCATTCG
1 ATCACATTGGCCATT-TGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCG
*
137851633 GCCTTATCACACATATGCATGTTCACATTC
65 GCCTTATCACACATATGCATGTTCACACTC
* *
137851663 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTTGG
1 ATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGG
137851728 CCTTATCAC-CATATGCATGTTCACACTC
66 CCTTATCACACATATGCATGTTCACACTC
*
137851756 ATCACATTGGCCATTTGGCCTTATCACATATATGCATGTCCACATTCATCACATT
1 ATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCACATT
137851811 AAGTCCTAAA
Statistics
Matches: 138, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
93 71 0.51
94 67 0.49
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (94 bp):
ATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATATGCATGTTCACACTC
Found at i:137856228 original size:26 final size:26
Alignment explanation
Indices: 137856199--137856249 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137856189 AAATTAATGC
137856199 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137856225 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137856250 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137858330 original size:26 final size:26
Alignment explanation
Indices: 137858301--137858351 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137858291 AAATTAATGC
137858301 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137858327 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137858352 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137860444 original size:26 final size:26
Alignment explanation
Indices: 137860415--137860465 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137860405 AAATTAATGC
137860415 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137860441 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137860466 TTCTTTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137862978 original size:28 final size:28
Alignment explanation
Indices: 137862931--137862999 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
137862921 ATTTAAACCC
*
137862931 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
* *
137862958 TTGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
137862986 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
137863000 TGATCTACGC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 6 0.16
28 31 0.84
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:137864829 original size:19 final size:18
Alignment explanation
Indices: 137864792--137864835 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
137864782 ATACATACAG
137864792 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
137864809 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
137864828 TACTAATT
1 TAATAATT
137864836 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:137865530 original size:14 final size:15
Alignment explanation
Indices: 137865509--137865545 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
137865499 GTGTACTATA
137865509 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
137865524 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
137865537 TCCCATATT
1 TCCCATATT
137865546 ACCTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:137865771 original size:26 final size:26
Alignment explanation
Indices: 137865742--137865792 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137865732 AAATTAATGC
137865742 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137865768 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137865793 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137867887 original size:26 final size:26
Alignment explanation
Indices: 137867858--137867908 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137867848 AAATTAATGC
137867858 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137867884 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137867909 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137870006 original size:26 final size:26
Alignment explanation
Indices: 137869977--137870027 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137869967 AAATTAATGC
137869977 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137870003 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137870028 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137872123 original size:26 final size:26
Alignment explanation
Indices: 137872094--137872144 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
137872084 AAATTAATGC
137872094 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
137872120 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
137872145 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:137874627 original size:68 final size:68
Alignment explanation
Indices: 137874480--137874635 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
137874470 AGCCGATTTG
* * * * *
137874480 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
137874545 TATC
65 TATA
* *
137874549 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
137874611 ATATAGTA
62 ATATA-TA
137874619 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
137874636 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:137882089 original size:68 final size:68
Alignment explanation
Indices: 137881942--137882097 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
137881932 AGCCGATTTG
* * * * *
137881942 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
137882007 TATC
65 TATA
* *
137882011 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
137882073 ATATAGTA
62 ATATA-TA
137882081 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
137882098 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:137890762 original size:69 final size:70
Alignment explanation
Indices: 137890588--137890762 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 70
137890578 TTTTCAAGGG
* * * *
137890588 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
137890653 TTTTCA
66 TTTT-A
* * ** *
137890659 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGTACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
137890724 TTTT-
66 TTTTA
** *
137890728 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
137890763 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 31 0.34
71 60 0.66
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:137890883 original size:72 final size:72
Alignment explanation
Indices: 137890762--137890914 Score: 193
Period size: 72 Copynumber: 2.1 Consensus size: 72
137890752 GAGTTAAGCC
* * * * *
137890762 TTTT-AATTTTTGTTTTTCTAAATCAACTCATATTGCGAGATGTGAGTTGAGTCTCGGGGCACGC
1 TTTTCAATTTTTGTGTTTCTAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGC
137890826 TGAGATA
66 TGAGATA
* * * *
137890833 TTTTCAATTTTTGTGTTT-TAATTTCAATTCATATTGTGACAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTCAATTTTTGTGTTTCTAA-ATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACG
*
137890897 CTGAGGTA
65 CTGAGATA
137890905 TTTTCAATTT
1 TTTTCAATTT
137890915 CTATTTTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
71 7 0.10
72 63 0.90
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (72 bp):
TTTTCAATTTTTGTGTTTCTAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTCAGGGCACGC
TGAGATA
Found at i:137890921 original size:13 final size:13
Alignment explanation
Indices: 137890903--137890927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137890893 CACGCTGAGG
137890903 TATTTTCAATTTC
1 TATTTTCAATTTC
137890916 TATTTTCAATTT
1 TATTTTCAATTT
137890928 ACGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:137891113 original size:140 final size:140
Alignment explanation
Indices: 137890861--137891481 Score: 1098
Period size: 140 Copynumber: 4.4 Consensus size: 140
137890851 TAATTTCAAT
* * *
137890861 TCATATTGTGACAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
137890926 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
137890991 CAAAATCAGC
131 CAAAATCAGC
*
137891001 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAATTCTGTTTTCAAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
137891066 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
137891131 CAAAATCAGC
131 CAAAATCAGC
* *
137891141 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCGAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
*
137891206 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
137891271 CAAAATCAGC
131 CAAAATCAGC
*
137891281 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCTAT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
*
137891346 TTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
137891411 CAAAATCAGC
131 CAAAATCAGC
** * * * * *
137891421 TCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATTTCTGTTTT
1 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTT
137891482 TCAAAAAAAA
Statistics
Matches: 462, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 462 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAAT
TTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
CAAAATCAGC
Found at i:137891221 original size:280 final size:279
Alignment explanation
Indices: 137890876--137891775 Score: 1215
Period size: 280 Copynumber: 3.2 Consensus size: 279
137890866 TTGTGACAGG
* * *
137890876 TGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAATTTACGTTGTTCAAGA
1 TGAGTTGAGCCTCAAGACACGCTAAGGTATTTTCAATTTCTATTTTC-ATTTACGTTGTTCAAGA
137890941 ATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATA
65 ATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATA
* *
137891006 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAATTCTGTTTTCAATTTACG
130 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTATG
137891071 TTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
195 TTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
**
137891136 TCAGCTCATATTGCGAGAGG
260 TCAGCTCATATTGCGAGAAA
* * *
137891156 TGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCGATTTACGTTGTTCAAGA
1 TGAGTTGAGCCTCAAGACACGCTAAGGTATTTTCAATTTCTATTTTC-ATTTACGTTGTTCAAGA
*
137891221 ATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATA
65 ATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATA
*
137891286 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCTATTTATG
130 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTATG
137891351 TTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
195 TTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
137891416 TCAGCTCATATTGCGAGAAA
260 TCAGCTCATATTGCGAGAAA
* * * **** *
137891436 TTAGTTGAGCCTCAAGACATGCTGAA-GTATTTTCAATTTCTGTTTTTCA---A----AAAAAAA
1 TGAGTTGAGCCTCAAGACACGCT-AAGGTATTTTCAATTTCT-ATTTTCATTTACGTTGTTCAAG
* *** *
137891493 AATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT-G
64 AATCAACTCATATTGCGAG--A-G-G-TG-G------G---T--TGA-ACCTTTT-AATTTCTAC
* * *
137891557 TTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
110 TTTTT---CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTT
137891622 TCAATTTCTGTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
172 TCAATTTCTGTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
*
137891687 TTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAAA
237 TTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAAA
* * *
137891730 TTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTATTTT
1 TGAGTTGAGCCTCAAGACACGCTAAGGTATTTTCAATTTCTATTTT
137891776 TCAAAAAAAA
Statistics
Matches: 563, Mismatches: 32, Indels: 37
0.89 0.05 0.06
Matches are distributed among these distances:
273 20 0.04
275 1 0.00
277 2 0.00
278 2 0.00
279 1 0.00
280 306 0.54
281 7 0.01
285 1 0.00
288 1 0.00
290 3 0.01
291 9 0.02
292 7 0.01
293 5 0.01
294 198 0.35
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (279 bp):
TGAGTTGAGCCTCAAGACACGCTAAGGTATTTTCAATTTCTATTTTCATTTACGTTGTTCAAGAA
TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTATGT
TGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAAT
CAGCTCATATTGCGAGAAA
Found at i:137891614 original size:75 final size:76
Alignment explanation
Indices: 137891412--137891635 Score: 342
Period size: 75 Copynumber: 2.9 Consensus size: 76
137891402 CTACTTTTTC
* * *
137891412 AAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
137891477 GTTTTTCAAAAAAA
66 GTTTTT---AAAAA
*
137891491 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
137891556 GTTTTT-AAAA
66 GTTTTTAAAAA
** * *
137891566 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
137891631 GTTTT
66 GTTTT
137891636 CAATTTATGT
Statistics
Matches: 136, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
75 69 0.51
79 67 0.49
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
GTTTTTAAAAA
Found at i:137891637 original size:13 final size:13
Alignment explanation
Indices: 137891619--137891652 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
137891609 CGCTGAGGTA
*
137891619 TTTTCAATTTCTG
1 TTTTCAATTTATG
137891632 TTTTCAATTTATG
1 TTTTCAATTTATG
137891645 TTGTTCAA
1 TT-TTCAA
137891653 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:137891714 original size:294 final size:294
Alignment explanation
Indices: 137890992--137891928 Score: 1355
Period size: 294 Copynumber: 3.2 Consensus size: 294
137890982 CTACTTTTTC
* * *
137890992 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
137891057 GTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 GTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
** * * * *
137891122 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AAGGTAT
131 CTACTTTTTCAAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAA-GTAT
***** * * * *
137891186 TTTCAATTTCTG-TTTTCGATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTT--
195 TTTCAATTTCTGTTTTTC-A---A---AAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGA
* *
137891248 G-----A-AC---C-------TTTT-AATTTCTACTTTTT--C
253 GCCTCAAGACATGCTGAGGTATTTTCAATTTCT-GTTTTTAAA
* *
137891272 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
137891337 GTTTTCTATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 GTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
137891402 CTACTTTTTCAAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATT
131 CTACTTTTTCAAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATT
137891467 TTCAATTTCTGTTTTTC-AAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
196 TTCAATTTCTGTTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
137891531 ACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAA
261 ACATGCTGAGGTATTTTCAATTTCTGTTTTT-AAA
137891566 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
137891631 GTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 GTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
* *
137891696 CTACTTTTTCAAAATCAGCTCATATTGCAAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATT
131 CTACTTTTTCAAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATT
*
137891761 TTCAATTTCTATTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
196 TTCAATTTCTGTTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
137891826 ACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAA
261 ACATGCTGAGGTATTTTCAATTTCTGTTTTT-AAA
*
137891861 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
137891926 GTT
66 GTT
137891929 GTTAAAAAAA
Statistics
Matches: 604, Mismatches: 28, Indels: 35
0.91 0.04 0.05
Matches are distributed among these distances:
273 27 0.04
275 1 0.00
276 1 0.00
280 195 0.32
281 9 0.01
284 1 0.00
291 9 0.01
292 7 0.01
294 206 0.34
295 148 0.25
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (294 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
CTACTTTTTCAAAATCAGCTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAAGTATT
TTCAATTTCTGTTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG
ACATGCTGAGGTATTTTCAATTTCTGTTTTTAAA
Found at i:137891909 original size:75 final size:75
Alignment explanation
Indices: 137891706--137892823 Score: 511
Period size: 75 Copynumber: 13.9 Consensus size: 75
137891696 CTACTTTTTC
* * ** * * *
137891706 AAAATCAGCTCATATTGCAAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
137891771 ATTTTTCAAAAAAAA
66 GTTTTTC-----AAA
* ** * *
137891786 AAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
137891851 GTTTTTCAAA
66 GTTTTTCAAA
*
137891861 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
137891926 GTTGTT-AAA
66 GTTTTTCAAA
* * * *
137891935 AAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
*
137892000 CCGTTTTTCAATTTCTGCCTTTCA
64 CTGTTTTTCAA------------A
** * * * ** * * * * * * * *
137892024 AAAAAAAAATCA-ACT-CTATTGCGAGAGGTGAG-TTGA-GCCTTGGCTCACGCGCTGAGCTATT
1 AAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCAGGAC---ACGC------TGAGGTATT
*
137892085 TTCAATTTCTGTCTTTCAAA
56 TTCAATTTCTGTTTTTCAAA
* * *
137892105 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--TTTTCAAT
* *
137892170 TTATATTTTTCAAA
62 TTCTGTTTTTCAAA
* * * * * **
137892184 AAAATCAACTCACATTGCGAGATGTGAGTTTAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCAATT
137892248 TCTGTTTTTCAGATTCTGTTTTCA
63 TCTGTTTTTCA-A----------A
* * * * * *
137892272 AAAATCAAATCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTGTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTCAATT
* *
137892336 TTTTTTTCTTCAAA
63 TCTGTTT-TTCAAA
* * * * *
137892350 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTTTGCGAGA-GTTGAGTTAAG
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CTCA-----G-GACACGCTGAGGT-A-
*
137892414 TCTTTTAATTTCTGTTTTTC--A
54 T-TTTCAATTTCTGTTTTTCAAA
* ** **
137892435 AAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAATTACA-TATCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TC-AGGACACGCT-GAGGTATTTTC--AA
*
137892499 TCTGCTTTTCAAGTTAAGTTTC-AA
61 ------TTTC-TGTT---TTTCAAA
** ** * *
137892523 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTAAGTTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC--GCTGAGGTATTTTCAATTT
*
137892588 CTGCTTTTCAAA
64 CTGTTTTTCAAA
* * ** ** *
137892600 AGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC--GCTGAGGTATTTTCAATTT
*
137892665 CTGCTTTTC-AA
64 CTGTTTTTCAAA
* **
137892676 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACACGCTGAGGCGTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTCAATTT
*
137892741 CTGCTTTTC--A
64 CTGTTTTTCAAA
* * * * * *
137892751 AAAATCAATTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACACTGAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
137892816 CTGTTTTT
64 CTGTTTTT
137892824 AATTTCTGCT
Statistics
Matches: 811, Mismatches: 138, Indels: 183
0.72 0.12 0.16
Matches are distributed among these distances:
74 41 0.05
75 132 0.16
76 93 0.11
77 103 0.13
78 15 0.02
79 92 0.11
80 71 0.09
81 10 0.01
82 12 0.01
83 13 0.02
84 33 0.04
85 11 0.01
86 9 0.01
87 17 0.02
88 119 0.15
89 16 0.02
93 24 0.03
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTCAAA
Found at i:137892085 original size:93 final size:94
Alignment explanation
Indices: 137891932--137892103 Score: 249
Period size: 93 Copynumber: 1.8 Consensus size: 94
137891922 TTCTGTTGTT
* *
137891932 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
137891997 TTTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAA
* * * *
137892026 AAAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
137892089 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
137892104 AAAAATCAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
92 2 0.03
93 53 0.77
94 14 0.20
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (94 bp):
AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:137892134 original size:77 final size:77
Alignment explanation
Indices: 137892004--137892783 Score: 503
Period size: 88 Copynumber: 9.7 Consensus size: 77
137891994 CAATTTCCGT
*
137892004 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
*
137892068 TCACGCGCTGAGCTA
63 TCACGTGCTGAGCTA
* *
137892083 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
*** *
137892147 ACACACTGAGGTA
65 ACGTGCTGAGCTA
* * * * * * * *
137892160 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTTAGCCTCGGGT
1 --TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
137892225 CACATG-TCGAGGTA
64 CACGTGCT-GAGCTA
** * * *
137892239 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAAATCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTCTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
137892304 GCCTTGGCTCACGTGCTGAGCTG
55 GCCTTGGCTCACGTGCTGAGCTA
* * * *
137892327 TTTTCAATTTTTTTTTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAA
1 TTTTCAATTTCTGTCT-TTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--
*** * * *
137892392 TTTTTGCGA-GAGTTGAGTTAA
59 TGGCT-C-ACGTGCTGAGCT-A
* * * ***
137892413 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAAT
1 -T-TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* * * *
137892476 TACAT-ATCGAGGTA
64 CACGTGCT-GAGCTA
**
137892490 TTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTC-TTTC------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
137892554 AGCCTTTGCTCACGTGCTAAGTTA
54 AGCCTTGGCTCACGTGCTGAGCTA
* * *
137892578 TTTTCAATTTCTG-CTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTC
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
137892642 ACGTGCTGAGCTA
65 ACGTGCTGAGCTA
*
137892655 TTTTCAATTTCTG-CTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-T
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GCT
** *
137892717 CACACGCTGAGGC-G
64 CACGTGCTGA-GCTA
*
137892731 TTTTCAATTTCTG-CTTTTC--AAAAATCAATTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
137892784 TCTCGGGCCA
Statistics
Matches: 568, Mismatches: 84, Indels: 102
0.75 0.11 0.14
Matches are distributed among these distances:
75 46 0.08
76 82 0.14
77 128 0.23
78 11 0.02
79 109 0.19
80 2 0.00
81 1 0.00
82 2 0.00
84 31 0.05
85 13 0.02
86 1 0.00
87 4 0.01
88 132 0.23
89 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CGTGCTGAGCTA
Found at i:137892161 original size:170 final size:168
Alignment explanation
Indices: 137891858--137892163 Score: 447
Period size: 170 Copynumber: 1.8 Consensus size: 168
137891848 TCTGTTTTTC
*
137891858 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
* * * *
137891923 TCTGTTGTTAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
66 TCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
137891988 TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
131 TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * *
137892026 AAAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
* *
137892089 ATTTCTGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACAC
63 ATTTCTGT-TGTT-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACAC
*
137892153 TGAGGTATTTT
126 CGAGGTATTTT
137892164 TTCAATTTAT
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
166 2 0.02
167 24 0.20
168 14 0.11
169 26 0.21
170 56 0.46
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (168 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
TCTGTTGTTAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
Done.