Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 448 of 770
Found at i:137892166 original size:79 final size:79
Alignment explanation
Indices: 137892003--137892809 Score: 359
Period size: 77 Copynumber: 10.0 Consensus size: 79
137891993 TCAATTTCCG
*
137892003 TTTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTC-TATTGCGAGAGGTGAGTTGAGCCTT-G
1 TTTTTCAATTTCTGTCTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCG
* * *
137892066 GCTCACGCGCTGAGCTA-
62 GATCACACGCTGAGGTAT
*
137892083 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGATC
*
137892147 ACACACTGAGGTAT
66 ACACGCTGAGGTAT
* * * * * * * *
137892161 TTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTTAGCCTCGGGTC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGATC
*
137892226 ACATG-TCGAGGTA-
66 ACACGCT-GAGGTAT
** * * *
137892239 -TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAAATCATATTGCGAGAAGTGAGTTG
1 TTTTTCAATTTCTGTCTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* ** *
137892303 AGCCTT-GGCTCACGTGCTGA-G-CT
55 AG-CTTCGGATCACACGCTGAGGTAT
* * * * ***
137892326 GTTTTCAATTTTTTTTTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
1 TTTTTCAATTTCTGTCT-TTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC-TTCGG
* * *
137892391 ATTTTTGCGAGA-GTTGAGTTAAGT
63 A----T-C-ACACGCTGAGGT-A-T
* * * *
137892415 CTTTT-AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTC-AAT
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTCGGAT
* **
137892476 TACA-TATCGAGGTAT
65 CACACGCT-GAGGTAT
* * *
137892491 TTTCAAAATCTGC-TTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTT-----T-T-CAATTTC-TG-T--CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * ** *
137892554 AGCCTT-TGCTCACGTGCT-AAGT-T
55 AG-CTTCGGATCACACGCTGAGGTAT
* * * * *
137892577 ATTTTCAATTTCTG-CTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTT-TGC
1 TTTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCGGA
** *
137892640 TCACGTGCTGAGCTA-
64 TCACACGCTGAGGTAT
*
137892655 -TTTTCAATTTCTG-CTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAG
1 TTTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGA-
*
137892716 TCACACGCTGAGG--C
64 TCACACGCTGAGGTAT
* * *
137892730 GTTTTCAATTTCTG-CTTTTC--AAAAATCAATTCATATTGCGAGAGGTGAGTTGAG-TCTCGGG
1 TTTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCT-TCGGA
* * *
137892791 CCACACACTGAGGTCT
64 TCACACGCTGAGGTAT
137892807 TTT
1 TTT
137892810 CAAATTCTGT
Statistics
Matches: 575, Mismatches: 87, Indels: 133
0.72 0.11 0.17
Matches are distributed among these distances:
75 49 0.09
76 87 0.15
77 124 0.22
78 14 0.02
79 114 0.20
80 5 0.01
81 2 0.00
82 1 0.00
83 6 0.01
84 31 0.05
85 13 0.02
86 4 0.01
87 12 0.02
88 100 0.17
89 13 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (79 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGATC
ACACGCTGAGGTAT
Found at i:137892290 original size:244 final size:240
Alignment explanation
Indices: 137891829--137892720 Score: 947
Period size: 251 Copynumber: 3.6 Consensus size: 240
137891819 CCTCAAGACA
* *
137891829 TGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * * * * *
137891894 CCTCAG--GACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCGTATTGTGAGA
66 CTTCAGATCACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGA
* * * ** * *
137891957 GGCGAGTTGAGCCTC-AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
131 GGTGAGTTGAGCCTCGA-GTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG--TT
**
137892021 TCAAAAAAAAAATCAACTCTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
193 TCAAAAATCAAATC-A---TATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
137892073 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
137892138 CTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCG
66 CTTCAGATCACACACTGAGGTA--TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCG
* * *
137892203 AGATGTGAGTTTAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGT
128 AGAGGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTG-
*
137892267 TTTCAAAAATCAAATCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
191 TTTCAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * * *
137892317 TGCTGAGCTGTTTTCAATTTTTTTTTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTG
1 TGCTGAGCTATTTTCAATTTCTGTCT-TTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTG
* ** * * * *
137892382 AGCTTTTTA-ATTTTTGCGAGAGTTGAGTTAAGTCTTTTAATTTCTGTTTTTC-AAAAATCAACT
64 AGC--TTCAGA---TCAC-ACA-CTGAGGT-A-T-TTTCAATTTCTGTTTTTCAAAAAATCAACT
* * * * *
137892445 CATATTGCGAGAGGTGAGTTGAACCTTC-AATTACATATCGAGGTATTTTCAAAATCTGCTTTTC
119 CATATTGCGAGAGGTGAGTTGAGCC-TCGAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC
** * *
137892509 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACG
183 AAGTTCTGTTTC-AAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * * *
137892568 TGCTAAGTTATTTTCAATTTCTG-CTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGA
1 TGCTGAGCTATTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *** * *
137892632 GCCTT-TGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGA
65 G-CTTCAGATCACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGA
137892696 GAGGTGAGTTGAGCCTCGAGTCACA
129 GAGGTGAGTTGAGCCTCGAGTCACA
137892721 CGCTGAGGCG
Statistics
Matches: 543, Mismatches: 79, Indels: 55
0.80 0.12 0.08
Matches are distributed among these distances:
240 18 0.03
241 41 0.08
242 1 0.00
243 5 0.01
244 120 0.22
245 12 0.02
246 42 0.08
247 2 0.00
248 34 0.06
249 96 0.18
250 16 0.03
251 130 0.24
252 10 0.02
253 16 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (240 bp):
TGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CTTCAGATCACACACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGTTTCA
AAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
Found at i:137892401 original size:30 final size:30
Alignment explanation
Indices: 137892365--137892424 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
137892355 TCAACTCATA
*
137892365 TTGCGAGAGGTGAGTTGAG-CTTTTTAATTT
1 TTGCGAGAGGTGAGTTAAGTC-TTTTAATTT
*
137892395 TTGCGAGAGTTGAGTTAAGTCTTTTAATTT
1 TTGCGAGAGGTGAGTTAAGTCTTTTAATTT
137892425 CTGTTTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.22, C:0.07, G:0.27, T:0.45
Consensus pattern (30 bp):
TTGCGAGAGGTGAGTTAAGTCTTTTAATTT
Found at i:137892465 original size:163 final size:150
Alignment explanation
Indices: 137892253--137892783 Score: 451
Period size: 163 Copynumber: 3.3 Consensus size: 150
137892243 CAAAATCTGT
* * *
137892253 TTTTCAGA-TTCTGTTTTCAAAAATCAAATCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTTCA-ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACG
*
137892317 TGCTGAGCTGTTTTCAATTTTTTTTTCTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTG
65 TGCTGAGCTATTTTCAATTTTTTTTT-TTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTG
* ** * *
137892382 AGCTTTTTAATTTTTGCGA-GAGTTGAGTTAA
127 AGC---CT--TTGCT-C-ACGAGCTAAGTT-A
* * ** *
137892413 GTCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAATTA
1 -T-TTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCA
* * *
137892478 CAT-ATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCG
63 CGTGCT-GAGCTATTTTC--AAT-T--TTTT----TT---TTTCAAAAAATCAACTCATATTGCG
*
137892542 AGAGGTGAGTTGAGCCTTTGCTCACGTGCTAAGTTA
115 AGAGGTGAGTTGAGCCTTTGCTCACGAGCTAAGTTA
* *
137892578 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCA
1 TTTTCAATTTCTG-TTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCA
* **
137892643 CGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
63 CGTGCTGAGCTATTTTCAATTTTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * ***
137892708 GCC-TCGAGTCAC-ACGCTGAGGCG
128 GCCTTTG-CTCACGA-GCTAAGTTA
*
137892731 TTTTCAATTTCTGCTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
137892784 TCTCGGGCCA
Statistics
Matches: 307, Mismatches: 41, Indels: 54
0.76 0.10 0.13
Matches are distributed among these distances:
151 29 0.09
152 5 0.02
153 69 0.22
156 1 0.00
160 2 0.01
161 2 0.01
162 11 0.04
163 72 0.23
164 4 0.01
165 52 0.17
166 10 0.03
167 3 0.01
168 4 0.01
169 1 0.00
172 32 0.10
173 6 0.02
174 3 0.01
175 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (150 bp):
TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACGT
GCTGAGCTATTTTCAATTTTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TTTGCTCACGAGCTAAGTTA
Found at i:137892735 original size:76 final size:76
Alignment explanation
Indices: 137892517--137892783 Score: 369
Period size: 77 Copynumber: 3.5 Consensus size: 76
137892507 TCAAGTTAAG
* ** * **
137892517 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTAAGTTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACACGCTGAGGCATTTT
137892582 CAATTTCTGCT
66 CAATTTCTGCT
* * **
137892593 TTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATT
1 TTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACACGCTGAGGC-ATT
137892657 TTCAATTTCTGCT
64 TTCAATTTCTGCT
* *
137892670 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCGAGTCACACGCTGAGGCGTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCG-CTCACACGCTGAGGCATTT
137892734 TCAATTTCTGCT
65 TCAATTTCTGCT
*
137892746 TTTC-AAAAATCAATTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
137892784 TCTCGGGCCA
Statistics
Matches: 176, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
75 35 0.20
76 68 0.39
77 73 0.41
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (76 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACACGCTGAGGCATTTT
CAATTTCTGCT
Found at i:137892836 original size:14 final size:13
Alignment explanation
Indices: 137892806--137892849 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
137892796 CACTGAGGTC
*
137892806 TTTTCAAATTCTG
1 TTTTCAATTTCTG
*
137892819 TTTTTAATTTCTG
1 TTTTCAATTTCTG
*
137892832 CTTTTCAATTTCTA
1 -TTTTCAATTTCTG
137892846 TTTT
1 TTTT
137892850 TTCAATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.18, C:0.14, G:0.05, T:0.64
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:137892850 original size:14 final size:14
Alignment explanation
Indices: 137892806--137892868 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
137892796 CACTGAGGTC
* *
137892806 TTTTCAAATTCTGT
1 TTTTCAATTTCTAT
**
137892820 TTTT-AATTTCTGC
1 TTTTCAATTTCTAT
137892833 TTTTCAATTTCTATT
1 TTTTCAATTTCTA-T
*
137892848 TTTTCAATTTATAT
1 TTTTCAATTTCTAT
137892862 TTTTCAA
1 TTTTCAA
137892869 AAATCAACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.22, C:0.13, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTTCAATTTCTAT
Found at i:137892853 original size:15 final size:15
Alignment explanation
Indices: 137892833--137892865 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
137892823 TAATTTCTGC
*
137892833 TTTTCAATTTCTATT
1 TTTTCAATTTATATT
137892848 TTTTCAATTTATATT
1 TTTTCAATTTATATT
137892863 TTT
1 TTT
137892866 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:137893714 original size:30 final size:30
Alignment explanation
Indices: 137893616--137893760 Score: 159
Period size: 30 Copynumber: 4.8 Consensus size: 30
137893606 ACTTTTCTCA
* * *
137893616 ACTAGCCATACCTTTTCCACCACCAACTTC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
137893646 ACTAGCCACTCCTTTTCCACCACTAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
137893676 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
137893706 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
137893736 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
137893761 CTTGTACCTA
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 3 0.03
30 95 0.97
ACGTcount: A:0.27, C:0.46, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:137894437 original size:22 final size:24
Alignment explanation
Indices: 137894411--137894469 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
137894401 ACATGTTATC
137894411 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
137894433 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
137894458 TTATGTACATAT
1 TTATGTATATAT
137894470 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:137894459 original size:25 final size:25
Alignment explanation
Indices: 137894427--137894475 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
137894417 ATATATCTTA
**
137894427 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
137894452 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
137894476 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:137894655 original size:16 final size:15
Alignment explanation
Indices: 137894631--137894678 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
137894621 TAATTATTAT
*
137894631 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
137894647 TATTTTAATATTTTA
1 TATTTTAATATTTTA
137894662 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
137894678 T
1 T
137894679 TATTCATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:137894666 original size:7 final size:8
Alignment explanation
Indices: 137894631--137894682 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
137894621 TAATTATTAT
*
137894631 TATTCTAA
1 TATTTTAA
*
137894639 TATTTTGA
1 TATTTTAA
137894647 TATTTTAA
1 TATTTTAA
137894655 TATTTT-A
1 TATTTTAA
137894662 TATTTTATA
1 TATTTTA-A
*
137894671 TATTTTAT
1 TATTTTAA
137894679 TATT
1 TATT
137894683 CATATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:137895506 original size:21 final size:22
Alignment explanation
Indices: 137895466--137895507 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
137895456 GAAATCAATT
*
137895466 GAGAAAATAATTTAATTTAATA
1 GAGAAAATAATTTAAGTTAATA
*
137895488 GAGAAATTAATTT-AGTTAAT
1 GAGAAAATAATTTAAGTTAAT
137895508 TTAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (22 bp):
GAGAAAATAATTTAAGTTAATA
Found at i:137898399 original size:39 final size:39
Alignment explanation
Indices: 137898342--137898416 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
137898332 GCAGAACACA
*
137898342 TATTAATGATGTGCAAACTAGGACATAATTAAAGACTCG
1 TATTAATGATGTGAAAACTAGGACATAATTAAAGACTCG
* *
137898381 TATTAATGATGTTAAAACTATGACATAATTAAAGAC
1 TATTAATGATGTGAAAACTAGGACATAATTAAAGAC
137898417 ACAAACTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.31
Consensus pattern (39 bp):
TATTAATGATGTGAAAACTAGGACATAATTAAAGACTCG
Found at i:137907938 original size:19 final size:19
Alignment explanation
Indices: 137907901--137907938 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
137907891 ACCTGTCAGA
*
137907901 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
137907920 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
137907939 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:137908504 original size:56 final size:56
Alignment explanation
Indices: 137908418--137908527 Score: 211
Period size: 56 Copynumber: 2.0 Consensus size: 56
137908408 TATCTCTCTC
*
137908418 GAGACTAATAACGTCTAACCTTAGGTTGATTAATTGAAATCTCTTTCTAATTAAGA
1 GAGACTAATAACGTCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAAGA
137908474 GAGACTAATAACGTCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAA
1 GAGACTAATAACGTCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAA
137908528 CACCTAGTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (56 bp):
GAGACTAATAACGTCTAACCCTAGGTTGATTAATTGAAATCTCTTTCTAATTAAGA
Found at i:137909661 original size:12 final size:12
Alignment explanation
Indices: 137909641--137909679 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
137909631 TGGGAACTAA
137909641 AAGTGAAAAATT
1 AAGTGAAAAATT
*
137909653 AAGTAAAAAATT
1 AAGTGAAAAATT
137909665 AAGTGAAAAATT
1 AAGTGAAAAATT
137909677 AAG
1 AAG
137909680 CTCCTTCAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (12 bp):
AAGTGAAAAATT
Found at i:137912595 original size:28 final size:28
Alignment explanation
Indices: 137912555--137912608 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
137912545 ATATAATCCC
*
137912555 ATGGGTCTCAACCTTGTGGTTTTACATT
1 ATGGGTCTCAACCTCGTGGTTTTACATT
137912583 ATGGGTCTCAACCTCGTGGTTTTACA
1 ATGGGTCTCAACCTCGTGGTTTTACA
137912609 CCTATTTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (28 bp):
ATGGGTCTCAACCTCGTGGTTTTACATT
Found at i:137912730 original size:27 final size:27
Alignment explanation
Indices: 137912692--137912748 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
137912682 TTTACATATC
137912692 TTTCACTTACCTAATTCTATTCACACA
1 TTTCACTTACCTAATTCTATTCACACA
137912719 TTTCACTTACCTAATTCTATTCACACA
1 TTTCACTTACCTAATTCTATTCACACA
137912746 TTT
1 TTT
137912749 AATTAGTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTCACTTACCTAATTCTATTCACACA
Found at i:137924316 original size:40 final size:40
Alignment explanation
Indices: 137924261--137924484 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
137924251 TAATTGAGGA
* *
137924261 TTATATCCGGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
137924301 TTATATCCGGGTTAAGTCCCGAAGGAATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
137924341 TTATATCCAGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
137924381 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTAGTTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
*** * * * *
137924421 TTATATATTGGCCAAGTTCCGAAGGCACTCGTACTGG-TG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
137924460 TTATATTCGGGCTAAGTCCCGAAGG
1 TTATATCCGGGCTAAGTCCCGAAGG
137924485 TATTTGTGTT
Statistics
Matches: 162, Mismatches: 22, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 22 0.14
40 140 0.86
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:137926999 original size:18 final size:18
Alignment explanation
Indices: 137926976--137927038 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 18
137926966 TTAACCCCCC
137926976 AAAAAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
*
137926994 AAAAAAAAA--GAA---A
1 AAAAAAAAACCTAACCCA
*
137927007 AAAGAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
*
137927025 AAAAAAAAAACTAA
1 AAAAAAAAACCTAA
137927039 AAAAACCCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
13 9 0.26
15 2 0.06
16 2 0.06
18 22 0.63
ACGTcount: A:0.75, C:0.17, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCA
Found at i:137927041 original size:32 final size:30
Alignment explanation
Indices: 137926976--137927033 Score: 107
Period size: 31 Copynumber: 1.9 Consensus size: 30
137926966 TTAACCCCCC
137926976 AAAAAAAAACCTAACCCAAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCAAAAAAAAAAGAA
137927006 AAAAGAAAAACCTAACCCAAAAAAAAAA
1 AAAA-AAAAACCTAACCCAAAAAAAAAA
137927034 ACTAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.76, C:0.17, G:0.03, T:0.03
Consensus pattern (30 bp):
AAAAAAAAACCTAACCCAAAAAAAAAAGAA
Found at i:137934721 original size:71 final size:69
Alignment explanation
Indices: 137934623--137934797 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
137934613 TTTTCAAGGG
* *
137934623 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
137934687 GTTTT
65 GTTTT
** * *
137934692 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
137934757 TGTTTT
64 TGTTTT
** * *
137934763 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
137934798 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:137934912 original size:71 final size:70
Alignment explanation
Indices: 137934797--137934989 Score: 266
Period size: 71 Copynumber: 2.8 Consensus size: 70
137934787 GAGTTAAGCC
* *
137934797 TTTTAATTTTTGT-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTAATTTTTGTGTTTT-AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGG-ACGC
137934861 TGAGGTA
64 TGAGGTA
* *
137934868 TTTTAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGACGCTG
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGACGCTG
137934933 AGGTA
66 AGGTA
* * * * *
137934938 TTTTTA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
137934990 TTTAATTTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
68 27 0.25
69 13 0.12
70 16 0.15
71 50 0.45
72 4 0.04
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (70 bp):
TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGACGCTG
AGGTA
Found at i:137934985 original size:192 final size:191
Alignment explanation
Indices: 137934623--137935273 Score: 866
Period size: 193 Copynumber: 3.4 Consensus size: 191
137934613 TTTTCAAGGG
* * * * *
137934623 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG
*
137934688 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
66 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGG-ACGCTGAGGTATTTTTAG
137934753 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
130 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTT-TTTTTCA
* *
137934816 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT-AATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG
* ** *
137934880 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGACGCTGAGGTATTTTTAG
66 T-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGACGCTGAGGTATTTTTAG
137934945 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAA-TTTTTTTTTCA
130 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCA
* *
137935006 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAA-TTTCG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG
* ** * * *
137935069 TTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
66 -TTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGGACGCTGAGGTATTTTT
* * ** * *
137935134 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACT
128 AGTTTATGTTT-T--A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-T-TT
137935198 TTTTCA
186 TTTTCA
* * * *
137935204 AAAT-AGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGA-ATATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG
137935267 TTTTCAA
66 TTTTCAA
137935274 TTTACGTTGT
Statistics
Matches: 409, Mismatches: 34, Indels: 27
0.87 0.07 0.06
Matches are distributed among these distances:
189 26 0.06
190 79 0.19
191 28 0.07
192 78 0.19
193 90 0.22
194 1 0.00
195 33 0.08
196 6 0.01
197 44 0.11
198 24 0.06
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (191 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGACGCTGAGGTATTTTTAGT
TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTTTTTTCA
Found at i:137935169 original size:73 final size:70
Alignment explanation
Indices: 137935003--137935180 Score: 257
Period size: 71 Copynumber: 2.5 Consensus size: 70
137934993 AATTTTTTTT
* * * *
137935003 TCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTC
1 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGATGAGGTAATTTCAATTTC
*
137935068 GTTTT
66 GTTTG
*
137935073 TCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATT
1 TC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGATGAGGTAATTTCAATT
137935138 TCTGTTTG
64 TC-GTTTG
*
137935146 TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
137935181 ACCTTTTAAT
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
70 2 0.02
71 35 0.36
72 25 0.26
73 34 0.35
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (70 bp):
TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGATGAGGTAATTTCAATTTC
GTTTG
Found at i:137935506 original size:140 final size:140
Alignment explanation
Indices: 137935130--137935694 Score: 966
Period size: 140 Copynumber: 4.0 Consensus size: 140
137935120 GATGAGGTAA
137935130 TTTCAATTT-CTGTT-TGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
1 TTTCAATTTAC-GTTGT-TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
137935193 CTACTTTTTCAAAAT-AGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAA--TAT
64 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AAGGTAT
137935255 TTTCAATTTCTGT
128 TTTCAATTTCTGT
137935268 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAG-GGT-GGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
137935331 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
137935396 CAATTTCTGT
131 CAATTTCTGT
*
137935406 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
*
137935471 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
137935536 CAATTTCTGT
131 CAATTTCTGT
*
137935546 TTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
*
137935611 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTAAGGTAT
*
137935675 TTTCAATTTCCGT
128 TTTCAATTTCTGT
137935688 CTTTCAA
1 -TTTCAA
137935695 AAAAAAAATT
Statistics
Matches: 411, Mismatches: 5, Indels: 17
0.95 0.01 0.04
Matches are distributed among these distances:
136 35 0.09
137 44 0.11
138 92 0.22
139 6 0.01
140 206 0.50
142 22 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
CAATTTCTGT
Found at i:137935550 original size:13 final size:13
Alignment explanation
Indices: 137935532--137935565 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
137935522 CGCTGAGGTA
*
137935532 TTTTCAATTTCTG
1 TTTTCAATTTATG
137935545 TTTTCAATTTATG
1 TTTTCAATTTATG
137935558 TTGTTCAA
1 TT-TTCAA
137935566 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:137935728 original size:81 final size:72
Alignment explanation
Indices: 137935614--137935835 Score: 241
Period size: 72 Copynumber: 3.0 Consensus size: 72
137935604 AATTTCTACT
* ** * * *
137935614 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
137935677 TCAATTTCCG
63 TCAATTTCCG
* *
137935687 TCTTTCAAAAAAAAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
**
137935752 AATTTCAATTTTTG
59 AATTTCAATTTCCG
*
137935766 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
137935831 ATTTC
66 ATTTC
137935836 TGTTCAAAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 19
0.81 0.08 0.12
Matches are distributed among these distances:
72 63 0.49
73 1 0.01
74 4 0.03
78 4 0.03
79 22 0.17
80 4 0.03
81 29 0.23
82 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCCG
Found at i:137935784 original size:72 final size:72
Alignment explanation
Indices: 137935699--137935839 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
137935689 TTTCAAAAAA
*
137935699 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTT
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
137935764 TGTTTTC
66 TGTTTTC
*
137935771 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
137935836 TGTT
66 TGTT
137935840 CAAAATGAGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:137935850 original size:49 final size:49
Alignment explanation
Indices: 137935793--137935888 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
137935783 ATATTGCGAG
*
137935793 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
137935842 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
137935889 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:137935935 original size:121 final size:121
Alignment explanation
Indices: 137935721--137935960 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
137935711 ATATTGAGAG
* *
137935721 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
137935786 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
137935842 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
137935907 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
137935961 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:137936002 original size:78 final size:75
Alignment explanation
Indices: 137935842--137936183 Score: 423
Period size: 78 Copynumber: 4.6 Consensus size: 75
137935832 TTTCTGTTCA
* *
137935842 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
137935904 ATATTGCGAG
66 ATATTGCGAG
* *
137935914 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
*
137935979 CTCATATTGTGAG
63 CTCATATTGCGAG
* *
137935992 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG-TTTTCAAAAAAATCAACTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
137936056 ATATTGCGAG
66 ATATTGCGAG
** * * * *
137936066 AGGTGAGTTGA--C-C-GGTTCAGGCTGAGGTATTTTCAATTT-TGTCTTTCAAAAAAATCAACT
1 AAATGAGTTGAGCCTCAAG-ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACT
137936126 CATATTGCGAG
65 CATATTGCGAG
** ** *
137936137 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTT
137936184 CAAATGAGTT
Statistics
Matches: 232, Mismatches: 25, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
70 3 0.01
71 59 0.25
72 43 0.19
73 6 0.03
74 50 0.22
75 4 0.02
77 5 0.02
78 62 0.27
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:137936165 original size:145 final size:147
Alignment explanation
Indices: 137935842--137936183 Score: 460
Period size: 145 Copynumber: 2.3 Consensus size: 147
137935832 TTTCTGTTCA
* *
137935842 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
* * *
137935907 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAA
66 TTGCGAGAAATGAGTTGA-CCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTC--AAAAA
*
137935972 AAATCAACTCATATTGTGAG
128 AAATCAACTCATATTGCGAG
* *
137935992 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCA
** * *
137936057 TATTGCGAGAGGTGAGTTGA-C-C-GGTTCAGGCTGAGGTATTTTCAATTT-TGTCTTTC-AAAA
64 TATTGCGAGAAATGAGTTGACCTCAAG-ACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAA
137936117 AAATCAACTCATATTGCGAG
128 AAATCAACTCATATTGCGAG
** *
137936137 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
137936184 CAAATGAGTT
Statistics
Matches: 173, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
145 66 0.38
148 8 0.05
149 22 0.13
150 49 0.28
152 28 0.16
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (147 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGACCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAA
TCAACTCATATTGCGAG
Found at i:137936366 original size:79 final size:78
Alignment explanation
Indices: 137936188--137936366 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 78
137936178 TCTGTTCAAA
* * * * * *
137936188 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAAATCAACT
1 TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTC-AAAAAAAATCAACT
* *
137936253 CATATTGCTAGAGG
65 CACATTGCGAGAGG
* * * *
137936267 TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTC-AAAAAAATCAAC
1 TGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTCAATTTATATCTTTCAAAAAAAATCAAC
*
137936331 TCACATTGCGAGATG
64 TCACATTGCGAGAGG
*
137936346 TGAGTTGAGCCTCGGGTCACA
1 TGAGTTGAGCCTCGGATCACA
137936367 TGTCGAGGTA
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 66 0.80
81 16 0.20
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (78 bp):
TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTCAAAAAAAATCAACTC
ACATTGCGAGAGG
Found at i:137936396 original size:14 final size:13
Alignment explanation
Indices: 137936377--137936412 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
137936367 TGTCGAGGTA
137936377 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
137936390 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
137936404 TTTTCAAAA
1 TTTTCAAAA
137936413 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:137936470 original size:88 final size:88
Alignment explanation
Indices: 137936321--137936482 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
137936311 TATTTTTCAA
* * *
137936321 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
137936386 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
137936409 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
137936473 TTCTGTTTTT
65 ATCTGTTTTT
137936483 TTTTCAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:137936549 original size:30 final size:28
Alignment explanation
Indices: 137936507--137936565 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 28
137936497 CAACTCATAT
137936507 TGCGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGGTGAGTTGAGTC-TTTTAATTTC
137936535 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAG-G-TGAGTTGAGTCTTTTAATTTC
137936565 T
1 T
137936566 ATTTTTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 6 0.21
29 1 0.04
30 20 0.71
31 1 0.04
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (28 bp):
TGCGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:137936630 original size:252 final size:248
Alignment explanation
Indices: 137936188--137936734 Score: 700
Period size: 252 Copynumber: 2.2 Consensus size: 248
137936178 TCTGTTCAAA
137936188 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG----TCTTTCAAAAAAAAATC
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAAAATC
*
137936249 AACTCATATTGCTAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATAT
66 AACTCATATTGC-AGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATAT
* * * ** *
137936314 TTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATT
130 TTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATT
* **
137936379 TTCAAAATCTGTTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAG
194 TTCAAAATCTGCTTTTCAAATTAAG-TTTCAAAAAATCAACTCATATTGCGAGAAG
* * *
137936434 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTTC-AAAAAAATTC
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAAAATC
* * * * *
137936498 AACTCATATTGC-GAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-A
66 AACTCATATTGCAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCA
* * *
137936560 ATTTCTATTTTTC-AAAAATCAACTGATATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCG
122 ATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCG
* *
137936624 AGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGG
187 AGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
*
137936686 TGAGTTGAGCCTTGGCTCACGCGCTAAGCTATTTTCAATTTCTGTTTTT
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
137936735 AATGTCTGTT
Statistics
Matches: 262, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
246 43 0.16
247 14 0.05
248 1 0.00
249 24 0.09
250 7 0.03
251 5 0.02
252 144 0.55
253 5 0.02
254 14 0.05
255 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (248 bp):
TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTCTTTCAAAAAAAAATC
AACTCATATTGCAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATT
TTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTT
CAAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
Found at i:137937409 original size:16 final size:16
Alignment explanation
Indices: 137937388--137937445 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
137937378 TAACCCCCCA
137937388 AAAAAAAACCTAACCC
1 AAAAAAAACCTAACCC
* *
137937404 AAAAAAAA--GAA--A
1 AAAAAAAACCTAACCC
137937416 AAAGAAAAACCTAACCC
1 AAA-AAAAACCTAACCC
*
137937433 AAAAAAAAACTAA
1 AAAAAAAACCTAA
137937446 AAAAACCCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
12 3 0.09
13 5 0.16
14 2 0.06
15 2 0.06
16 17 0.53
17 3 0.09
ACGTcount: A:0.72, C:0.19, G:0.03, T:0.05
Consensus pattern (16 bp):
AAAAAAAACCTAACCC
Found at i:137938296 original size:18 final size:18
Alignment explanation
Indices: 137938231--137938299 Score: 63
Period size: 20 Copynumber: 3.7 Consensus size: 18
137938221 TAGATATTAT
137938231 TATTATTA-TTAT-TACA
1 TATTATTATTTATGTACA
*
137938247 TACTT-TTATTATATGCTATA
1 TA-TTATTATT-TATG-TACA
137938267 TATATATGTATTTATGTACA
1 TAT-TAT-TATTTATGTACA
137938287 TATTATTATTTAT
1 TATTATTATTTAT
137938300 ATTATTATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
18 10 0.23
19 4 0.09
20 12 0.28
21 5 0.12
22 4 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (18 bp):
TATTATTATTTATGTACA
Found at i:137944040 original size:39 final size:40
Alignment explanation
Indices: 137943950--137944165 Score: 205
Period size: 39 Copynumber: 5.5 Consensus size: 40
137943940 CTCAAGTAAT
* * * * *
137943950 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
* * *
137943988 CTTCGGGTCTTAG-CCGGATATGGCCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
* *
137944027 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
* * * *
137944067 CTTCGGG-TTTAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
* * *
137944106 CTTC-GGATCTTAGTCCGG-T-TAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGCCA-CTAGCACAAATGC
137944145 CTTC-GGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
137944166 CATTCGAATA
Statistics
Matches: 144, Mismatches: 27, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
38 42 0.29
39 64 0.44
40 38 0.26
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGC
Found at i:137944106 original size:79 final size:78
Alignment explanation
Indices: 137943986--137944165 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 78
137943976 CTTGCACAAG
* *
137943986 GCCTTCGGGTCTTAG-CCGGATATGGCCACTAGCACAGATGCCTTCGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGT-TTAGCCCGGATATAGCAACTAGCACAGATGCCTTC-GGATCTTAGCCCGG-T-T
* *
137944049 AGTC-GCTAGCACAAAT
62 AGTCACCTAGCACAAAA
* *
137944065 GCCTTCGGGTTTAGCCCGGATATAGCAACTCGCAC-GAATGCCTTCGGATCTTAGTCCGGTTAGT
1 GCCTTCGGGTTTAGCCCGGATATAGCAACTAGCACAG-ATGCCTTCGGATCTTAGCCCGGTTAGT
137944129 CACCTAGCACAAAA
65 CACCTAGCACAAAA
**
137944143 GCCTTCGGACTTAGCCCGGATAT
1 GCCTTCGGGTTTAGCCCGGATAT
137944166 CATTCGAATA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
77 5 0.06
78 40 0.45
79 44 0.49
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (78 bp):
GCCTTCGGGTTTAGCCCGGATATAGCAACTAGCACAGATGCCTTCGGATCTTAGCCCGGTTAGTC
ACCTAGCACAAAA
Found at i:137952512 original size:40 final size:40
Alignment explanation
Indices: 137952410--137952552 Score: 153
Period size: 40 Copynumber: 3.5 Consensus size: 40
137952400 TCGAATGGTG
* * *
137952410 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
137952451 TCTGGG-TCAATTCCCGGAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
137952491 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
137952531 TCCGGGCTAATTCCTGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
137952553 ATCGAGCGAG
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
40 59 0.71
41 24 0.29
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:137952562 original size:40 final size:40
Alignment explanation
Indices: 137952478--137952563 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
137952468 AGGCATTTGT
* * *
137952478 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATCGA
* * * *
137952518 GCGAGTTACTAAATCCGGGCTAATTCCTGAAGGCAATCGA
1 GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATCGA
137952558 GCGAGT
1 GCGAGT
137952564 CGCTATATCC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (40 bp):
GCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATCGA
Found at i:137952562 original size:80 final size:81
Alignment explanation
Indices: 137952411--137952563 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 81
137952401 CGAATGGTGT
* * * * * *
137952411 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGGAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATC
*
137952476 GTGCGAGTTACCAAAA
66 GAGCGAGTTACCAAAA
* * * *
137952492 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCTGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
137952555 CGAGCGAGT
65 CGAGCGAGT
137952564 CGCTATATCC
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.02
80 34 0.57
81 25 0.42
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATC
GAGCGAGTTACCAAAA
Found at i:137952574 original size:40 final size:40
Alignment explanation
Indices: 137952410--137952575 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 40
137952400 TCGAATGGTG
** * * * *
137952410 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCAATCGAGC-GAGTCACTAAA
* * * * * * * *
137952451 TCTGGG-TCAATTCCCGGAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCAATCGAGCGAGTCACTAAA
* * * * *
137952491 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCAATCGAGCGAGTCACTAAA
* * * *
137952531 TCCGGGCTAATTCCTGAAGGCAATCGAGCGAGTCGCTATA
1 TCCGGGCTAAGTCCCGAAGGCAATCGAGCGAGTCACTAAA
137952571 TCCGG
1 TCCGG
137952576 TTAAATTCTG
Statistics
Matches: 101, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
40 77 0.76
41 24 0.24
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCAATCGAGCGAGTCACTAAA
Found at i:137957801 original size:40 final size:39
Alignment explanation
Indices: 137957756--137957963 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
137957746 CGGAATACAA
*
137957756 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
137957796 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
137957836 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
137957876 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
137957916 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
137957956 CCGGATAT
1 CCGGATAT
137957964 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:137957903 original size:80 final size:81
Alignment explanation
Indices: 137957756--137957961 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
137957746 CGGAATACAA
* * * *
137957756 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
137957820 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
137957836 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
137957899 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
137957916 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
137957962 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:137963678 original size:39 final size:40
Alignment explanation
Indices: 137963577--137963723 Score: 156
Period size: 40 Copynumber: 3.7 Consensus size: 40
137963567 TCGAATGGTG
* * *
137963577 TCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAA
* *
137963617 TCCGGG-TCAATTCCCGAAGGCATTTGTGTGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
* * * *
137963657 ACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
* *
137963696 TCCGGGCTAATTCCCGAAGGCAATTGTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG
137963724 CGAATCACTC
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 34 0.39
40 39 0.44
41 15 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
Found at i:137963741 original size:79 final size:80
Alignment explanation
Indices: 137963578--137963731 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 80
137963568 CGAATGGTGT
* * *
137963578 CCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
* * *
137963643 TGTGAGTTACCAAAA
66 TGCGAATCACCAAAA
* * *
137963658 CCGGGTTAAGTCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAATT
137963721 GTGCGAATCAC
65 GTGCGAATCAC
137963732 TCTAACCGGG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.02
79 39 0.61
80 24 0.38
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:137966656 original size:40 final size:40
Alignment explanation
Indices: 137966566--137966786 Score: 236
Period size: 40 Copynumber: 5.5 Consensus size: 40
137966556 CTCAAGTAAT
* * * *
137966566 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
137966604 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACATATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
137966644 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
137966684 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
137966724 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
137966765 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
137966787 CATTCGAATA
Statistics
Matches: 151, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 93 0.62
41 26 0.17
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:137982148 original size:40 final size:40
Alignment explanation
Indices: 137982103--137982269 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
137982093 CGGAATATAA
137982103 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
137982143 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
137982183 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
137982223 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
137982262 CCGGATAT
1 CCGGATAT
137982270 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:137986815 original size:17 final size:18
Alignment explanation
Indices: 137986773--137986821 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
137986763 AGTTGAAAAG
137986773 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
137986792 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
137986809 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
137986822 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:137987710 original size:40 final size:40
Alignment explanation
Indices: 137987644--137987810 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
137987634 AAATTGAATG
* * *
137987644 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
137987683 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
137987723 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
137987763 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
137987803 ATATCCGG
1 ATATCCGG
137987811 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:137999452 original size:20 final size:20
Alignment explanation
Indices: 137999429--137999466 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
137999419 CACATCCAAA
*
137999429 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
137999449 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
137999467 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:138010297 original size:40 final size:40
Alignment explanation
Indices: 138010235--138010491 Score: 203
Period size: 40 Copynumber: 6.5 Consensus size: 40
138010225 CGGATGATAA
*
138010235 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-GCTAATAT
* * * *
138010275 CTGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTAATAT
* *
138010315 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTA--ATAT
** *
138010355 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAGTGCTAATAT
** * *
138010395 -CGGGCTAAGTCCCGAAGGCATTTGTTCAAGT--TACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTA--ATAT
*
138010434 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-GCTAATAT
**
138010474 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
138010492 TACTTGGTTT
Statistics
Matches: 177, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
37 3 0.02
39 47 0.27
40 122 0.69
41 3 0.02
42 1 0.01
43 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTAATAT
Found at i:138010438 original size:79 final size:80
Alignment explanation
Indices: 138010277--138010458 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 80
138010267 GGCTAATTCT
* * *
138010277 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* ** *
138010342 CGAGCTATTATATCC
66 CAAGCTACCATAACC
* * *
138010357 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTATAT-CGGGCTAAGTCCCGAAGGCATTTGTT
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
138010421 CAAGTTACCATAACC
66 CAAGCTACCATAACC
138010436 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
138010459 AGCTAGTGGC
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 57 0.63
80 34 0.37
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACCATAACC
Found at i:138010473 original size:79 final size:78
Alignment explanation
Indices: 138010277--138010491 Score: 243
Period size: 79 Copynumber: 2.7 Consensus size: 78
138010267 GGCTAATTCT
* * *
138010277 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATAT-CGGGCTAAGTCCCGAAGGCATTTGTG
* ** *
138010342 CGAGCTATTATATCC
64 CAAGCTACCATAACC
* *
138010357 GGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTATTATATCGGGCTAAGTCCCGAAGGCATTTGTT
1 GGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TACTATATCGGGCTAAGTCCCGAAGGCATTTGTG
*
138010421 CAAGTTACCATAACC
64 CAAGCTACCATAACC
* * * **
138010436 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAAACCCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATATCGGGCTAAGTCCCGAAGG
138010492 TACTTGGTTT
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 80 0.70
80 33 0.29
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (78 bp):
GGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCA
AGCTACCATAACC
Found at i:138010473 original size:119 final size:118
Alignment explanation
Indices: 138010277--138010491 Score: 288
Period size: 119 Copynumber: 1.8 Consensus size: 118
138010267 GGCTAATTCT
* * * * *
138010277 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAG
* **
138010342 CGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTATATC
66 CGAGCTACTATATCC-GGCTAAACCCCGAAGGCATTTGTACGAGTTATTATATC
* * *
138010396 GGGCTAAGTCCCGAAGGCATTTGTTCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAG
1 GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAG
* *
138010461 CTAG-TGGCTATATCCGGCTAAACCCCGAAGG
66 CGAGCT-ACTATATCCGGCTAAACCCCGAAGG
138010492 TACTTGGTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
118 15 0.18
119 67 0.82
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (118 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAG
CGAGCTACTATATCCGGCTAAACCCCGAAGGCATTTGTACGAGTTATTATATC
Found at i:138015414 original size:26 final size:26
Alignment explanation
Indices: 138015385--138015492 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
138015375 TGGTACAAAT
*
138015385 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
138015411 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
138015437 TGATAATGGGTTAGTTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
138015463 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
138015489 TGAT
1 TGAT
138015493 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:138017433 original size:23 final size:23
Alignment explanation
Indices: 138017407--138017474 Score: 136
Period size: 23 Copynumber: 3.0 Consensus size: 23
138017397 CCAGTACCAC
138017407 TGATTTCAAAATAACACGACAAT
1 TGATTTCAAAATAACACGACAAT
138017430 TGATTTCAAAATAACACGACAAT
1 TGATTTCAAAATAACACGACAAT
138017453 TGATTTCAAAATAACACGACAA
1 TGATTTCAAAATAACACGACAA
138017475 CAAGCAAAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.25
Consensus pattern (23 bp):
TGATTTCAAAATAACACGACAAT
Found at i:138019079 original size:24 final size:25
Alignment explanation
Indices: 138019034--138019080 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
138019024 ATTTTTTATT
*
138019034 TTGATGAATATTTTGAGTTATGTCA
1 TTGATGAATATTTTGAGCTATGTCA
138019059 TTGATGAATA-TTTGAGCTATGT
1 TTGATGAATATTTTGAGCTATGT
138019081 GCTGTTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (25 bp):
TTGATGAATATTTTGAGCTATGTCA
Found at i:138019746 original size:45 final size:45
Alignment explanation
Indices: 138019685--138019805 Score: 143
Period size: 45 Copynumber: 2.7 Consensus size: 45
138019675 TAGGATTCCA
*
138019685 ATATGTGTTTTTGTGTAAGACCATGTCTGGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAAT
** * * *
138019730 ATATGTGTTTTCGTGTAAGACCACATTTGAGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAAT
* * * * *
138019775 ATATTTGGTTACATATAAGACCATGTCTGGG
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGG
138019806 TCATCAGCAT
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAAT
Found at i:138024324 original size:27 final size:26
Alignment explanation
Indices: 138024260--138024349 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
138024250 GGCATAATCA
* * *
138024260 TCATTTTACCATACAAGAGTATTACAG
1 TCATTTTACCCTAC-AGGGTATTACGG
*
138024287 TCACTTTACCCTACAGTGGTATTACGG
1 TCATTTTACCCTACAG-GGTATTACGG
* * *
138024314 TCATTTTACCCTATAGGGGTATTATGA
1 TCATTTTACCCTACA-GGGTATTACGG
138024341 TCATTTTAC
1 TCATTTTAC
138024350 AAATCGGGGG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.04
27 50 0.94
28 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:138024359 original size:27 final size:27
Alignment explanation
Indices: 138024329--138024568 Score: 207
Period size: 27 Copynumber: 8.9 Consensus size: 27
138024319 TTACCCTATA
* * *
138024329 GGGGTATTATGATCATTTTACAAATCG
1 GGGGTATTTTGATAATTTTACAAACCG
* *
138024356 GGGGTATTTTGGTAGA-CTTACAAACCG
1 GGGGTATTTTGATA-ATTTTACAAACCG
* **
138024383 GGGGTATTTCGATAATTTTACAAACTA
1 GGGGTATTTTGATAATTTTACAAACCG
* * **
138024410 GGGGTATTTTGGTAATCTTACAAACTA
1 GGGGTATTTTGATAATTTTACAAACCG
* * * **
138024437 GAGGTATTTCGGTAATTTTACAAA-TT
1 GGGGTATTTTGATAATTTTACAAACCG
* *
138024463 GGGGT-TTTTTAGTAATTTTACAAATCG
1 GGGGTATTTTGA-TAATTTTACAAACCG
* * *
138024490 AGGGTATTTTGGTAATCTTACAAACCG
1 GGGGTATTTTGATAATTTTACAAACCG
*
138024517 GGGGTATTTCGATAATTTTACAAACCG
1 GGGGTATTTTGATAATTTTACAAACCG
* * *
138024544 AGGGTATTTCGGTAATTTTACAAAC
1 GGGGTATTTTGATAATTTTACAAAC
138024569 AAAGGTCTTA
Statistics
Matches: 174, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
25 3 0.02
26 18 0.10
27 148 0.85
28 5 0.03
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGGTATTTTGATAATTTTACAAACCG
Found at i:138024498 original size:80 final size:81
Alignment explanation
Indices: 138024373--138024568 Score: 254
Period size: 80 Copynumber: 2.4 Consensus size: 81
138024363 TTTGGTAGAC
* * *
138024373 TTACAAACCGGGGGTATTTC-GATAATTTTACAAACTAGGGGTATTTTGGTAATCTTACAAACTA
1 TTACAAACCGAGGGTATTTCAG-TAATTTTACAAACGAGGGGTATTTTGGTAATCTTACAAACCA
*
138024437 GAGGTATTTCGGTAATT
65 GAGGTATTTCGATAATT
** * * *
138024454 TTACAAATTG-GGGTTTTTTAGTAATTTTACAAATCGA-GGGTATTTTGGTAATCTTACAAACCG
1 TTACAAACCGAGGGTATTTCAGTAATTTTACAAA-CGAGGGGTATTTTGGTAATCTTACAAACCA
*
138024517 GGGGTATTTCGATAATT
65 GAGGTATTTCGATAATT
*
138024534 TTACAAACCGAGGGTATTTCGGTAATTTTACAAAC
1 TTACAAACCGAGGGTATTTCAGTAATTTTACAAAC
138024569 AAAGGTCTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 67 0.68
81 31 0.32
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (81 bp):
TTACAAACCGAGGGTATTTCAGTAATTTTACAAACGAGGGGTATTTTGGTAATCTTACAAACCAG
AGGTATTTCGATAATT
Found at i:138039349 original size:13 final size:13
Alignment explanation
Indices: 138039331--138039356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138039321 TATGTTCATT
138039331 CATAATCTAGAAA
1 CATAATCTAGAAA
138039344 CATAATCTAGAAA
1 CATAATCTAGAAA
138039357 TAACCATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
CATAATCTAGAAA
Found at i:138040770 original size:43 final size:43
Alignment explanation
Indices: 138040712--138040863 Score: 189
Period size: 43 Copynumber: 3.5 Consensus size: 43
138040702 TGTAGAAAAG
* * * *
138040712 CGTCGCTATAGAACATGACCTTTAGCAGCACTTTCCCCACAAG
1 CGTCGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAA
* * *
138040755 CGCCGTTAAAGAACATGACCTTTAGCGGTGCTTTCCCCACAAA
1 CGTCGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAA
* * *
138040798 CGTCGCT-ATGAAACATGAACTTTAGCGGTTCTTTCCCCACAAA
1 CGTCGCTAAAG-AACATGACCTTTAGCGGTACTTTCCCCACAAA
*
138040841 CATCGCTAAAGAACATGACCTTT
1 CGTCGCTAAAGAACATGACCTTT
138040864 GCGACGTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 2 0.02
43 88 0.96
44 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (43 bp):
CGTCGCTAAAGAACATGACCTTTAGCGGTACTTTCCCCACAAA
Found at i:138041485 original size:5 final size:5
Alignment explanation
Indices: 138041475--138041507 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
138041465 GAACTGTGAA
138041475 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
138041508 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:138047421 original size:30 final size:30
Alignment explanation
Indices: 138047337--138047424 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
138047327 AAAATTAAAT
* * *
138047337 ATAAATTTTAATTTAATGTGTATTTTCATAC
1 ATAAAATTTAATTTAATAT-AATTTTCATAC
* **
138047368 ATGAAATTTAATTTTGTATAATTTT-ATAC
1 ATAAAATTTAATTTAATATAATTTTCATAC
138047397 ATAAAATTTAAATTTAAT-TCAATTTTCA
1 ATAAAATTT-AATTTAATAT-AATTTTCA
138047425 CAAATCACTA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
29 13 0.29
30 17 0.38
31 15 0.33
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.50
Consensus pattern (30 bp):
ATAAAATTTAATTTAATATAATTTTCATAC
Found at i:138054498 original size:29 final size:29
Alignment explanation
Indices: 138054463--138054536 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
138054453 GTTGTGAGAT
*
138054463 TGGCACTAAGTGTGCGGGCTTGAAA-TGA-A
1 TGGCACTAAGTGTGCGAG-TTGAAAGT-ACA
*
138054492 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
138054521 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
138054537 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 6 0.15
29 35 0.85
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:138059249 original size:18 final size:18
Alignment explanation
Indices: 138059226--138059262 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
138059216 GATCTAAATG
138059226 TAATCAAAATTAACTTAT
1 TAATCAAAATTAACTTAT
138059244 TAATCAAAATTAACTTAT
1 TAATCAAAATTAACTTAT
138059262 T
1 T
138059263 TAATTATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (18 bp):
TAATCAAAATTAACTTAT
Found at i:138066016 original size:85 final size:85
Alignment explanation
Indices: 138065916--138066079 Score: 283
Period size: 85 Copynumber: 1.9 Consensus size: 85
138065906 ACATATTGAT
138065916 ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCACTAACGTGGTGCTA
1 ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCACTAACGTGGTGCTA
*
138065981 ATTGGATATACCACGATTAA
66 AGTGGATATACCACGATTAA
* * *
138066001 ACATGTAATGTGGTGCTAAGTGGATATTCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCACTAACGTGGTGCTA
*
138066066 AGTGGATATGCCAC
66 AGTGGATATACCAC
138066080 TGTTGTACAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 74 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (85 bp):
ACATGTAATGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCACTAACGTGGTGCTA
AGTGGATATACCACGATTAA
Found at i:138069149 original size:40 final size:40
Alignment explanation
Indices: 138069104--138069271 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
138069094 CGGAATATAA
138069104 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
138069144 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
138069184 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138069224 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
138069264 CCGGATAT
1 CCGGATAT
138069272 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138076353 original size:40 final size:40
Alignment explanation
Indices: 138076308--138076475 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
138076298 CGGAATATAA
138076308 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
138076348 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
138076388 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138076428 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
138076468 CCGGATAT
1 CCGGATAT
138076476 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138076458 original size:80 final size:80
Alignment explanation
Indices: 138076324--138076473 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
138076314 ATAATCACGT
*
138076324 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
138076388 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
138076404 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
138076467 CCCGGAT
64 CCCGGAT
138076474 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:138078097 original size:38 final size:38
Alignment explanation
Indices: 138078055--138078130 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
138078045 CGTCATAACA
138078055 TAGATACGTGAAATACATTGTGAATCTTTTCTAACTCT
1 TAGATACGTGAAATACATTGTGAATCTTTTCTAACTCT
138078093 TAGATACGTGAAATACATTGTGAATCTTTTCTAACTCT
1 TAGATACGTGAAATACATTGTGAATCTTTTCTAACTCT
138078131 AACGACAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (38 bp):
TAGATACGTGAAATACATTGTGAATCTTTTCTAACTCT
Found at i:138079305 original size:20 final size:20
Alignment explanation
Indices: 138079280--138079319 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
138079270 ATAAACATCA
138079280 GTCTAGCTTTCAACTCAGCG
1 GTCTAGCTTTCAACTCAGCG
*
138079300 GTCTAGCTTTCAATTCAGCG
1 GTCTAGCTTTCAACTCAGCG
138079320 AACCACCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (20 bp):
GTCTAGCTTTCAACTCAGCG
Found at i:138079595 original size:45 final size:46
Alignment explanation
Indices: 138079530--138079621 Score: 177
Period size: 45 Copynumber: 2.0 Consensus size: 46
138079520 CTGTGGAGAT
138079530 ATGACATTTTTCATTGTACAAATGGTGTCGCCAAATCTTCAAAGTG
1 ATGACATTTTTCATTGTACAAATGGTGTCGCCAAATCTTCAAAGTG
138079576 ATGACA-TTTTCATTGTACAAATGGTGTCGCCAAATCTTCAAAGTG
1 ATGACATTTTTCATTGTACAAATGGTGTCGCCAAATCTTCAAAGTG
138079621 A
1 A
138079622 ACACAATCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 40 0.87
46 6 0.13
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (46 bp):
ATGACATTTTTCATTGTACAAATGGTGTCGCCAAATCTTCAAAGTG
Found at i:138082002 original size:13 final size:14
Alignment explanation
Indices: 138081981--138082013 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
138081971 GTTATTAATG
138081981 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
138081995 AAATTATTAAATAT
1 AAATTATTAAATAT
138082009 AAATT
1 AAATT
138082014 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:138084699 original size:41 final size:43
Alignment explanation
Indices: 138084595--138084712 Score: 143
Period size: 44 Copynumber: 2.8 Consensus size: 43
138084585 CTGAGATATC
* *
138084595 GTGTAAGACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGATTT-AGATTTAT
*
138084639 GTGTAAGACCATGTTTGGGACATAGGCATCGTATTT-GATTT-T
1 GTGTAAGACCATGTCTGGGACATAGGCATCG-ATTTAGATTTAT
* * *
138084681 GT-TAAGACCCTGTCTGGGATAGAGGCATCGAT
1 GTGTAAGACCATGTCTGGGACATAGGCATCGAT
138084713 ACTAAATTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
40 2 0.03
41 24 0.36
42 3 0.05
43 5 0.08
44 28 0.42
45 4 0.06
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGATTTAGATTTAT
Found at i:138091020 original size:25 final size:25
Alignment explanation
Indices: 138090992--138091039 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
138090982 TTATATTATG
* * *
138090992 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
138091017 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
138091040 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:138091100 original size:20 final size:20
Alignment explanation
Indices: 138091075--138091121 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
138091065 GTTTTGATAT
138091075 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
138091095 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
138091115 ACATGAT
1 ACATGAT
138091122 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:138091235 original size:24 final size:24
Alignment explanation
Indices: 138091169--138091251 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
138091159 AGGAAGTGCA
* **
138091169 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TT
138091194 AAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGGGC-TTTGCCCCAGTTTATT
138091219 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATT
138091242 AAAAGAGGCT
1 AAAAG-GGCT
138091252 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
23 10 0.19
24 14 0.26
25 16 0.30
26 13 0.25
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATT
Found at i:138091502 original size:31 final size:30
Alignment explanation
Indices: 138091464--138091548 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 30
138091454 TACAGTAAAT
138091464 GCTTCGGCCCAGTAATATGAAATATGAAAAG
1 GCTTCGG-CCAGTAATATGAAATATGAAAAG
138091495 GCTTCGGCCAGTGTTATGAAATATGAAATATGAAAAG
1 GCTTCGGCCA--G---T--AATATGAAATATGAAAAG
138091532 GCTTCGGCCAGT-ATATG
1 GCTTCGGCCAGTAATATG
138091549 CTGAGTTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
29 5 0.11
30 3 0.06
31 7 0.15
32 2 0.04
35 2 0.04
37 28 0.60
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (30 bp):
GCTTCGGCCAGTAATATGAAATATGAAAAG
Found at i:138091513 original size:30 final size:31
Alignment explanation
Indices: 138091464--138091522 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
138091454 TACAGTAAAT
138091464 GCTTCGGCCCAGTAATATGAAATATGAAAAG
1 GCTTCGGCCCAGTAATATGAAATATGAAAAG
**
138091495 GCTTCGG-CCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
138091523 TATGAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAG
Found at i:138095283 original size:39 final size:40
Alignment explanation
Indices: 138095239--138095328 Score: 146
Period size: 39 Copynumber: 2.3 Consensus size: 40
138095229 TGAAGCCATT
138095239 GCAATTGTGCGAGCTATGATATCCGGGTTAAG-CCCGAAG
1 GCAATTGTGCGAGCTATGATATCCGGGTTAAGTCCCGAAG
* *
138095278 GCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAG
1 GCAATTGTGCGAGCTATGATATCCGGGTTAAGTCCCGAAG
*
138095318 GCATTTGTGCG
1 GCAATTGTGCG
138095329 GGTTACCATA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 30 0.64
40 17 0.36
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (40 bp):
GCAATTGTGCGAGCTATGATATCCGGGTTAAGTCCCGAAG
Found at i:138095326 original size:40 final size:40
Alignment explanation
Indices: 138095243--138095364 Score: 147
Period size: 40 Copynumber: 3.1 Consensus size: 40
138095233 GCCATTGCAA
* *
138095243 TTGTGCGAGCTATGATATCCGGGTTAAG-CCCGAAGGCAA
1 TTGTGCGAGTTATGATATCCGGGTTAAGTCCCGAAGGCAT
*
138095282 TTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 TTGTGCGAGTTATGATATCCGGGTTAAGTCCCGAAGGCAT
* ** * * * *
138095322 TTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCGT
1 TTGTGCGAGTTATGATATCCGGGTTAAGTCCCGAAGGCAT
138095362 TTG
1 TTG
138095365 AATGAGTAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 26 0.37
40 45 0.63
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.27
Consensus pattern (40 bp):
TTGTGCGAGTTATGATATCCGGGTTAAGTCCCGAAGGCAT
Found at i:138102559 original size:40 final size:39
Alignment explanation
Indices: 138102409--138102561 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
138102399 GAATGTTCGA
*
138102409 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
138102448 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
138102487 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
138102526 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
138102562 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:138102577 original size:40 final size:39
Alignment explanation
Indices: 138102410--138102592 Score: 249
Period size: 39 Copynumber: 4.6 Consensus size: 39
138102400 AATGTTCGAG
* *
138102410 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
138102449 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
138102488 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
138102527 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
138102567 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
138102593 GTTTGAACGA
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.68
40 41 0.32
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:138102619 original size:79 final size:78
Alignment explanation
Indices: 138102416--138102630 Score: 218
Period size: 78 Copynumber: 2.7 Consensus size: 78
138102406 CGAGTGATAT
** * * *
138102416 CCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
** *
138102481 CGAGCTATGATAT
66 CGAGCTACCATAA
** * *
138102494 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
* *
138102559 GCGGGTTACCATAA
65 GCGAGCTACCATAA
* ** *
138102573 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
138102631 TATGTGATTC
Statistics
Matches: 118, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 48 0.41
79 45 0.38
80 24 0.20
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:138111682 original size:40 final size:40
Alignment explanation
Indices: 138111625--138111809 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
138111615 TCGAATGATG
* * * *
138111625 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
138111665 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
138111705 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
**
138111745 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
138111785 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
138111810 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
39 35 0.27
40 89 0.67
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:138111816 original size:79 final size:80
Alignment explanation
Indices: 138111625--138111842 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 80
138111615 TCGAATGATG
* * **
138111625 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
138111689 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
138111705 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
138111767 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* **
138111785 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
138111843 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 18
0.80 0.07 0.12
Matches are distributed among these distances:
78 16 0.13
79 49 0.41
80 46 0.39
81 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:138119832 original size:40 final size:39
Alignment explanation
Indices: 138119641--138119825 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 39
138119631 TCGAATGATG
* * *
138119641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
138119681 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
138119721 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
138119761 TCCGGGTTAAGTCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
138119801 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
138119826 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 34 0.26
40 89 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:138119832 original size:79 final size:79
Alignment explanation
Indices: 138119641--138119858 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
138119631 TCGAATGATG
* * ** *
138119641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATC
138119705 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* *
138119721 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATCT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATCT
138119785 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* ** *
138119801 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
138119859 TACGTGATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 7 0.06
79 67 0.56
80 37 0.31
81 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATCTG
TGCGAGTTACTAAA
Found at i:138124001 original size:31 final size:30
Alignment explanation
Indices: 138123929--138124041 Score: 133
Period size: 31 Copynumber: 3.7 Consensus size: 30
138123919 TCAGTCTCAA
*
138123929 CATATACTGGGCCGAAGCC-TTTCATTAA-A
1 CATATACTGGGCCGAAGCCTTTTCA-TAATT
138123958 CGAT-TACTGGGCCGAAGCCTTTTCATAATT
1 C-ATATACTGGGCCGAAGCCTTTTCATAATT
*
138123988 CATATCACTGGGCCGAAGCCTTTTCATTATT
1 CATAT-ACTGGGCCGAAGCCTTTTCATAATT
* *
138124019 CATATCACCGGGCTGAAGCCTTT
1 CATAT-ACTGGGCCGAAGCCTTT
138124042 ACTGTAAACG
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
29 21 0.28
30 9 0.12
31 45 0.60
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (30 bp):
CATATACTGGGCCGAAGCCTTTTCATAATT
Found at i:138124384 original size:11 final size:11
Alignment explanation
Indices: 138124353--138124400 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
138124343 ATATGAATAC
138124353 ATCATGTGCAT
1 ATCATGTGCAT
*
138124364 ATCA--TACAT
1 ATCATGTGCAT
138124373 ATCATGTGCAT
1 ATCATGTGCAT
*
138124384 ATCATGT-CAA
1 ATCATGTGCAT
138124394 ATCATGT
1 ATCATGT
138124401 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:138126691 original size:49 final size:49
Alignment explanation
Indices: 138126547--138126871 Score: 469
Period size: 49 Copynumber: 6.7 Consensus size: 49
138126537 CCCTTCGAGA
* * * *
138126547 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
138126594 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
138126641 CTTGTCACATATACATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
138126690 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
138126739 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
138126788 CTTATCACATATATATACACTTTCAAATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
138126837 CTTATCACATATATATATACACATTCACATTCATC
1 CTTATCAC--ATATATATACACTTTCACATTCATC
138126872 GCGTAAAATC
Statistics
Matches: 254, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 46 0.18
49 184 0.72
51 23 0.09
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:138132966 original size:40 final size:40
Alignment explanation
Indices: 138132909--138133060 Score: 193
Period size: 40 Copynumber: 3.8 Consensus size: 40
138132899 TCGAATGATG
* ** *
138132909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTCCCAAA
138132949 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAA
*
138132989 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTCCCAAA
**
138133029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAG
138133061 CTATTATAAC
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.91
41 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:138133074 original size:40 final size:40
Alignment explanation
Indices: 138132909--138133100 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
138132899 TCGAATGATG
*
138132909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTGAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
138132949 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* * * *
138132989 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
138133029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
138133070 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
138133101 TCGCTATATC
Statistics
Matches: 132, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 120 0.91
41 11 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:138133086 original size:80 final size:79
Alignment explanation
Indices: 138132909--138133127 Score: 205
Period size: 80 Copynumber: 2.7 Consensus size: 79
138132899 TCGAATGATG
*
138132909 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTGAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
138132974 GTGCGAGTTCCCAAA
65 GTGCGAGCTACCAAA
* * ** **
138132989 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
**
138133052 TTGTGCGAGCTATTATAA
63 TTGTGCGAGCTACCA-AA
* * * *
138133070 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGTCG-CTATATCCGGA-TAAGATCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGT-GACCAAATCCGGACTAAGATCCGAAGG
138133128 TACGTGATTC
Statistics
Matches: 112, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
79 13 0.12
80 89 0.79
81 10 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGCTACCAAA
Found at i:138135900 original size:40 final size:39
Alignment explanation
Indices: 138135855--138136062 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
138135845 CGGAATACAA
*
138135855 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
138135895 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
138135935 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
138135975 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
138136015 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
138136055 CCGGATAT
1 CCGGATAT
138136063 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:138135995 original size:80 final size:80
Alignment explanation
Indices: 138135855--138136061 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
138135845 CGGAATACAA
* * *
138135855 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
138135919 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
138135935 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
138135999 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
138136015 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
138136062 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:138143794 original size:40 final size:40
Alignment explanation
Indices: 138143749--138143956 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
138143739 CGGAATACAA
* *
138143749 CCGGATATAACCACAAGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138143789 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138143829 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* *** *
138143869 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
138143909 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
138143949 CCGGATAT
1 CCGGATAT
138143957 CATTCAATTG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138150817 original size:25 final size:24
Alignment explanation
Indices: 138150776--138150846 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 24
138150766 GATTATGTAG
138150776 AAAGAATAAAGAAATGAAAAAAAAA
1 AAAGAA-AAAGAAATGAAAAAAAAA
* * *
138150801 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
138150826 AAAGAAAAGGAAA--AAAAAAAA
1 AAAGAAAAAGAAATGAAAAAAAA
138150847 GTGTTCATTC
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 7 0.18
24 6 0.15
25 26 0.67
ACGTcount: A:0.77, C:0.01, G:0.15, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:138152057 original size:28 final size:27
Alignment explanation
Indices: 138152024--138152092 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
138152014 AAATTTGTAC
**
138152024 AGCACTAAGTGTGCAAATTTGATTATAT
1 AGCACTAAGTGTGC-AAGCTGATTATAT
* * *
138152052 AGCACTATGTGTGCGAGCTGATTTTAT
1 AGCACTAAGTGTGCAAGCTGATTATAT
138152079 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
138152093 GGATTTACTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
27 22 0.63
28 13 0.37
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAAGCTGATTATAT
Found at i:138158593 original size:40 final size:40
Alignment explanation
Indices: 138158548--138158714 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
138158538 CGGAATATAA
138158548 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
138158588 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
138158628 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138158668 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138158707 CCGGATAT
1 CCGGATAT
138158715 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138158698 original size:80 final size:79
Alignment explanation
Indices: 138158548--138158714 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
138158538 CGGAATATAA
* *
138158548 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
138158613 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
138158628 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
138158690 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
138158707 CCGGATAT
1 CCGGATAT
138158715 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:138159559 original size:17 final size:19
Alignment explanation
Indices: 138159536--138159581 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
138159526 AAGAAGCATG
138159536 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
138159554 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
138159572 AATCATGCTC
1 AATCATGCTC
138159582 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:138167882 original size:40 final size:40
Alignment explanation
Indices: 138167837--138168003 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
138167827 CGGAATATAA
138167837 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138167877 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
138167917 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138167957 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138167996 CCGGATAT
1 CCGGATAT
138168004 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138175877 original size:40 final size:40
Alignment explanation
Indices: 138175832--138175998 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
138175822 CGGAATATAA
138175832 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138175872 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
138175912 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138175952 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138175991 CCGGATAT
1 CCGGATAT
138175999 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138180821 original size:15 final size:15
Alignment explanation
Indices: 138180792--138180830 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
138180782 AACAGAGAAG
138180792 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
138180808 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
138180823 CCATGATA
1 CCAAGATA
138180831 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:138185558 original size:20 final size:19
Alignment explanation
Indices: 138185535--138185594 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 19
138185525 TAAACATGGT
138185535 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
*
138185554 CATGTATGATATGTACATG-
1 -ATGTATGATATGCACATGA
138185573 A--TATGATATGCACATG-
1 ATGTATGATATGCACATGA
138185589 ATGTAT
1 ATGTAT
138185595 TCATAAATGC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 15 0.42
18 4 0.11
20 17 0.47
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:138185579 original size:16 final size:15
Alignment explanation
Indices: 138185539--138185590 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
138185529 CATGGTATGT
*
138185539 ATGATATGCACATGAC
1 ATGATATG-ATATGAC
138185555 ATG-TATGATATGTAC
1 ATGATATGATATG-AC
138185570 ATGATATGATATGCAC
1 ATGATATGATATG-AC
138185586 ATGAT
1 ATGAT
138185591 GTATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.12
15 9 0.28
16 19 0.59
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (15 bp):
ATGATATGATATGAC
Found at i:138185765 original size:73 final size:71
Alignment explanation
Indices: 138185640--138185831 Score: 260
Period size: 73 Copynumber: 2.6 Consensus size: 71
138185630 GAGGAAGTGC
* * ** *
138185640 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCTC
1 AAAAGGGCTTATG-CCTAGTTATTAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTATGCCCC
138185705 AGTTATT
65 AGTTATT
138185712 AAAAAGGGCTTATGACCTAGTTATTAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTATGCCC
1 -AAAAGGGCTTATG-CCTAGTTATTAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTATGCCC
138185777 CAGTTATT
64 CAGTTATT
* *
138185785 AAAAGGGCTTTTGCCTCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTATGCCT-AGTTATTAAAAG-GGCTTATGCC-CCAGTTA
138185832 TATGATAAAG
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
71 3 0.03
72 29 0.27
73 76 0.70
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (71 bp):
AAAAGGGCTTATGCCTAGTTATTAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTATGCCCCA
GTTATT
Found at i:138185824 original size:24 final size:24
Alignment explanation
Indices: 138185640--138185832 Score: 239
Period size: 24 Copynumber: 8.0 Consensus size: 24
138185630 GAGGAAGTGC
*
138185640 AAAAGGGCTTATGCC-CTAGTTATC
1 AAAAGGGCTTATGCCTC-AGTTATT
* *
138185664 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCTCAGTTATT
138185688 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCTCAGTTATT
138185712 AAAAAGGGCTTATGACCT-AGTTATT
1 -AAAAGGGCTTATG-CCTCAGTTATT
* **
138185737 AAAAGGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCTCAGTTATT
*
138185761 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCTCAGTTATT
*
138185785 AAAAGGGCTTTTGCCTCAGTTATT
1 AAAAGGGCTTATGCCTCAGTTATT
*
138185809 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCCT-CAGTTAT
138185833 ATGATAAAGC
Statistics
Matches: 150, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
23 2 0.01
24 114 0.76
25 31 0.21
26 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCTCAGTTATT
Found at i:138193764 original size:25 final size:25
Alignment explanation
Indices: 138193736--138193783 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
138193726 TTATATTATG
* *
138193736 AAAACGACCATTTTGCCCCTAGGTA
1 AAAACGACCATTATACCCCTAGGTA
*
138193761 AAAATGACCATTATACCCCTAGG
1 AAAACGACCATTATACCCCTAGG
138193784 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (25 bp):
AAAACGACCATTATACCCCTAGGTA
Found at i:138193850 original size:20 final size:20
Alignment explanation
Indices: 138193827--138193865 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
138193817 TAAACATGGT
138193827 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
138193847 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
138193866 TATGATATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Done.