Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 450 of 770
Found at i:138613737 original size:40 final size:39
Alignment explanation
Indices: 138613573--138613755 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
138613563 AAATTGAATG
* * *
138613573 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
138613613 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
138613653 ACATCCGGGCT-AGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
138613692 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
138613731 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
138613756 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 34 0.31
40 71 0.64
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:138619158 original size:39 final size:40
Alignment explanation
Indices: 138619074--138619160 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 40
138619064 TTTGCTAGTA
* * *
138619074 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
* * *
138619114 CTATCCGGGCTAAGA-CCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
138619153 ATATCCGG
1 ATATCCGG
138619161 TTAAGTCCGT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 26 0.65
40 14 0.35
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
Found at i:138627112 original size:80 final size:80
Alignment explanation
Indices: 138626979--138627164 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 80
138626969 ATTGAATGAT
* * * * *
138626979 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
138627044 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
*
138627059 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
138627124 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
*
138627139 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
138627165 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 87 0.94
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:138627169 original size:40 final size:40
Alignment explanation
Indices: 138627019--138627170 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
138627009 TGGAAATTAT
* * * * * *
138627019 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * * * *
138627059 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
138627099 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
138627139 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
138627171 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 88 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:138627181 original size:80 final size:80
Alignment explanation
Indices: 138627017--138627200 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
138627007 GCTGGAAATT
* * *
138627017 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
138627082 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
138627097 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
138627160 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
138627177 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
138627201 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 81 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:138627183 original size:40 final size:38
Alignment explanation
Indices: 138627016--138627200 Score: 156
Period size: 40 Copynumber: 4.7 Consensus size: 38
138627006 TGCTGGAAAT
* * *
138627016 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
138627055 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
*
138627096 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
138627135 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * *
138627175 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
138627201 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.04
40 109 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:138632100 original size:8 final size:8
Alignment explanation
Indices: 138632089--138632113 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
138632079 TTAAACTTCT
138632089 TCACTTAC
1 TCACTTAC
138632097 TCACTTAC
1 TCACTTAC
138632105 TCACTTAC
1 TCACTTAC
138632113 T
1 T
138632114 TAAATAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (8 bp):
TCACTTAC
Found at i:138634165 original size:40 final size:40
Alignment explanation
Indices: 138634070--138634365 Score: 395
Period size: 40 Copynumber: 7.4 Consensus size: 40
138634060 GATGATAACT
*
138634070 GGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCC
* * * *
138634111 GGGCTAAGTGCCGAAGGCATTTGTGCGAGTTATTACATAC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
138634151 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
138634191 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
138634231 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACGATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
138634271 GGGCTATGTCCCGAAGGCATTGGTGCGAGTTACGATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
138634311 GGGCTATGTCCCGAAGGCA-TTGAGTGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
138634350 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
138634366 TACTTGGCTT
Statistics
Matches: 233, Mismatches: 19, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
38 15 0.06
39 13 0.06
40 180 0.77
41 21 0.09
42 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:138636048 original size:55 final size:55
Alignment explanation
Indices: 138635959--138636100 Score: 144
Period size: 55 Copynumber: 2.6 Consensus size: 55
138635949 TCCCCAATGT
* * * * * ** *
138635959 CATGCCTTGGCATGGCCTTACACGGGA-CCTTTGCCTTATAATAACTTATTAA-TGC
1 CATGCCTTGACATGGTCTTACACGGTATCC-TTGCCTCAGAA-AACTTACCAATTAC
** *
138636014 CATGTTTTGACATGGTCTTACACGGTATCCTTGCCTCAGAAACCTTACCAATTAC
1 CATGCCTTGACATGGTCTTACACGGTATCCTTGCCTCAGAAAACTTACCAATTAC
*
138636069 CATGCCTTGACATGGTCTTACATGGTATCCTT
1 CATGCCTTGACATGGTCTTACACGGTATCCTT
138636101 AAACCCTAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 7 0.10
55 62 0.87
56 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (55 bp):
CATGCCTTGACATGGTCTTACACGGTATCCTTGCCTCAGAAAACTTACCAATTAC
Found at i:138648049 original size:20 final size:20
Alignment explanation
Indices: 138648021--138648068 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
138648011 TTTAAGGGCC
138648021 ACACGCCCATGTGGCATGGG
1 ACACGCCCATGTGGCATGGG
* *
138648041 ACACTCCCATGTGGCTTGGG
1 ACACGCCCATGTGGCATGGG
*
138648061 ACATGCCC
1 ACACGCCC
138648069 GTGCGAGCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (20 bp):
ACACGCCCATGTGGCATGGG
Found at i:138649831 original size:42 final size:42
Alignment explanation
Indices: 138649710--138649831 Score: 122
Period size: 43 Copynumber: 2.9 Consensus size: 42
138649700 TACCATACTA
** * *
138649710 ATGCCATATCCCAGATATGGTCTTACATGTAATATCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
* * *
138649752 ATGCCAATAGCCCAGCTATGGT-TTAACACGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTT-ACAC-ATAATCTCATATCG
* *
138649795 ATGCCCTATCCCAGATTTGGTCTTACACATAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
138649832 GTAACCTTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 29 0.46
43 33 0.52
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCTCATATCG
Found at i:138651584 original size:20 final size:20
Alignment explanation
Indices: 138651531--138651585 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
138651521 AGCTGAAAGT
*
138651531 AAGCTCAGTTGAGCTCAAAC
1 AAGCTGAGTTGAGCTCAAAC
*** *
138651551 AAGCTGAAACGAGCTCAAAT
1 AAGCTGAGTTGAGCTCAAAC
*
138651571 GAGCTGAGTTGAGCT
1 AAGCTGAGTTGAGCT
138651586 GGACGGAGCT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
AAGCTGAGTTGAGCTCAAAC
Found at i:138653240 original size:48 final size:47
Alignment explanation
Indices: 138653188--138653291 Score: 118
Period size: 48 Copynumber: 2.2 Consensus size: 47
138653178 TTTCCACTTT
* *
138653188 TTTTTCTTGTTCACATTCTTTTTCTCTCTCAAACTCTTTTTCATTCTC
1 TTTTTCTT-CTCACATTCTTTTTCACTCTCAAACTCTTTTTCATTCTC
* ** * * *
138653236 TTTTTCAATCTCATTTTCTTTTTCACTCTCAATCTCTTTTTCTTTTTC
1 TTTTTC-TTCTCACATTCTTTTTCACTCTCAAACTCTTTTTCATTCTC
138653284 TTTTTCTT
1 TTTTTCTT
138653292 TCATTTCTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
47 1 0.02
48 44 0.96
49 1 0.02
ACGTcount: A:0.12, C:0.25, G:0.01, T:0.62
Consensus pattern (47 bp):
TTTTTCTTCTCACATTCTTTTTCACTCTCAAACTCTTTTTCATTCTC
Found at i:138653249 original size:18 final size:18
Alignment explanation
Indices: 138653228--138653277 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
138653218 AAACTCTTTT
138653228 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
138653246 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
138653264 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
138653278 TTTTTCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:138653252 original size:24 final size:24
Alignment explanation
Indices: 138653203--138653289 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 24
138653193 CTTGTTCACA
* * *
138653203 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTTTTTCAATCTCTTT
* * *
138653227 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTTTTTCAATCTCTTT
** *
138653251 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTTTTTCAATCTCTTT
138653275 TTCTTTTTCTTTTTC
1 TTCTTTTTCTTTTTC
138653290 TTTCATTTCT
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.62
Consensus pattern (24 bp):
TTCTTTTTCTTTTTCAATCTCTTT
Found at i:138653343 original size:42 final size:42
Alignment explanation
Indices: 138653287--138653383 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
138653277 CTTTTTCTTT
* * *
138653287 TTCTTTCA-TTTCTTTGTTTCTTTTCTCGATTTCATTCAAGA
1 TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
138653328 TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
1 TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
*
138653370 TCCTCTCATTTTCT
1 TTCTCTCATTTTCT
138653384 CTCATAATCT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 7 0.14
42 44 0.86
ACGTcount: A:0.14, C:0.24, G:0.05, T:0.57
Consensus pattern (42 bp):
TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
Found at i:138653361 original size:21 final size:21
Alignment explanation
Indices: 138653294--138653361 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
138653284 TTTTTCTTTC
*
138653294 ATTTCTTTGTTTCTTTTCTCG
1 ATTTCTTTGTTTCTTCTCTCG
* *****
138653315 ATTTCATTCAAGATTCTCTC-
1 ATTTCTTTGTTTCTTCTCTCG
138653335 ATTTTCTTTGTTTCTTCTCTCG
1 A-TTTCTTTGTTTCTTCTCTCG
138653357 ATTTC
1 ATTTC
138653362 ATTCAAAATC
Statistics
Matches: 32, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.12, C:0.22, G:0.07, T:0.59
Consensus pattern (21 bp):
ATTTCTTTGTTTCTTCTCTCG
Found at i:138655867 original size:20 final size:20
Alignment explanation
Indices: 138655821--138655868 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
138655811 AGTAAGCTCG
138655821 GTTGAGCTCAAACAAGCTGA
1 GTTGAGCTCAAACAAGCTGA
*** **
138655841 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACAAGCTGA
138655861 GTTGAGCT
1 GTTGAGCT
138655869 GGACGGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACAAGCTGA
Found at i:138656519 original size:12 final size:13
Alignment explanation
Indices: 138656502--138656530 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
138656492 AGATGGACAA
138656502 AATTTGGG-TTTT
1 AATTTGGGTTTTT
138656514 AATTTGGGTTTTT
1 AATTTGGGTTTTT
138656527 AATT
1 AATT
138656531 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (13 bp):
AATTTGGGTTTTT
Found at i:138660136 original size:132 final size:132
Alignment explanation
Indices: 138659885--138660272 Score: 424
Period size: 132 Copynumber: 2.9 Consensus size: 132
138659875 TCATTCATTC
* * *
138659885 AAAAATCCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGC-GAAATCGTGCCCTAACGT
1 AAAAATCCTTCAAAACGAAGACGAGACTCGATGTTTGACAATTCGCAG-AATCATGCCCTAACGT
* * **
138659949 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATA-TCAC-TTCGAAATTTCACTCACAT
65 GTTGGGTTGCAATTTCGCGTTTGCTCAAAACAATCGAATATTC-CTTTAG-GTTTTCACTCACAT
*
138660012 CTTTT
128 CTTCT
* * * * ** *
138660017 TAAAATCCTTCAAAATGAAGACGAGACCCTATACTTAACAATTCGCAGAATCATGCCCTAACGTG
1 AAAAATCCTTCAAAACGAAGACGAGACTCGATGTTTGACAATTCGCAGAATCATGCCCTAACGTG
* **
138660082 TTGGGTTGCAATTTCGCGTCTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCACATCTT
138660147 CT
131 CT
* * * * * * * * *
138660149 AAAAATCTTTTAAAACAAAGGCAATACTCGGTGTTTGATAATTCG-AGAATCATGCCCTATCGTG
1 AAAAATCCTTCAAAACGAAGACGAGACTCGATGTTTGACAATTCGCAGAATCATGCCCTAACGTG
** * * *
138660213 TTGGGTTGTGACTTCTCGTTTGCTCAAAACAATTGAATATTCCTTTTAGGTTTTCACTCA
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAACAATCGAATATTCC-TTTAGGTTTTCACTCA
138660273 TGTTTATTAA
Statistics
Matches: 212, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
131 55 0.26
132 151 0.71
133 6 0.03
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (132 bp):
AAAAATCCTTCAAAACGAAGACGAGACTCGATGTTTGACAATTCGCAGAATCATGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCACATCTT
CT
Found at i:138660338 original size:132 final size:131
Alignment explanation
Indices: 138659885--138660354 Score: 381
Period size: 132 Copynumber: 3.6 Consensus size: 131
138659875 TCATTCATTC
* * * * * * * * * *
138659885 AAAAATCCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGAAATCGTGCCCTAACGTG
1 AAAAATCTTTCAAAACAAAGGCAATACTCGATGTTTGACAATTCGAG-AATCATGCCCTATCGTG
* * * * ** **
138659950 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATA-TCAC-TTCGAAATTTCACTCACATC
65 TTGGGTTGCAACTTCGCGTCTGCTCAAAACAATCGAATATTC-CTTTAG-GTTTTCACTCATGTC
*
138660013 TTTT
128 TTCT
* * ** * * * * * ** * *
138660017 TAAAATCCTTCAAAATGAAGACGAGACCCTATACTTAACAATTCGCAGAATCATGCCCTAACGTG
1 AAAAATCTTTCAAAACAAAGGCAATACTCGATGTTTGACAATTCG-AGAATCATGCCCTATCGTG
*
138660082 TTGGGTTGCAATTTCGCGTCTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTCTT
65 TTGGGTTGCAACTTCGCGTCTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTCTT
138660147 CT
130 CT
* * *
138660149 AAAAATCTTTTAAAACAAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGT
1 AAAAATCTTTCAAAACAAAGGCAATACTCGATGTTTGACAATTCGAGAATCATGCCCTATCGTGT
** * * *
138660214 TGGGTTGTGACTTCTCGTTTGCTCAAAACAATTGAATATTCCTTTTAGGTTTTCACTCATGT-TT
66 TGGGTTGCAACTTCGCGTCTGCTCAAAACAATCGAATATTCC-TTTAGGTTTTCACTCATGTCTT
*
138660278 ATT
130 -CT
*** * ** * * *
138660281 AAAAATCTTTCAAAGGGAAGGCGATGTTCGATGTTTGGCGATTTGAGAATCGA-GCCCTATCGTG
1 AAAAATCTTTCAAAACAAAGGCAATACTCGATGTTTGACAATTCGAGAATC-ATGCCCTATCGTG
*
138660345 CTGGGTTGCA
65 TTGGGTTGCA
138660355 CTTTTTCATT
Statistics
Matches: 275, Mismatches: 57, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
131 57 0.21
132 211 0.77
133 7 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (131 bp):
AAAAATCTTTCAAAACAAAGGCAATACTCGATGTTTGACAATTCGAGAATCATGCCCTATCGTGT
TGGGTTGCAACTTCGCGTCTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTCTTC
T
Found at i:138668847 original size:30 final size:29
Alignment explanation
Indices: 138668753--138668854 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
138668743 TATAGTGAAT
* * *
138668753 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
138668782 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
138668810 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
138668840 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
138668855 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:138674488 original size:40 final size:39
Alignment explanation
Indices: 138674321--138674491 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
138674311 AGAAATTGAA
* *
138674321 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
138674361 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
138674401 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
**
138674441 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
138674481 TGATATCCGGG
1 TGATATCCGGG
138674492 TTAAAGTCCC
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:138682510 original size:40 final size:39
Alignment explanation
Indices: 138682342--138682511 Score: 157
Period size: 40 Copynumber: 4.3 Consensus size: 39
138682332 AGAAATTGAA
* *
138682342 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
138682382 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
138682422 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
138682462 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
138682502 TGATATCCGG
1 TGATATCCGG
138682512 TTAAAGTCCC
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 94 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:138684205 original size:27 final size:28
Alignment explanation
Indices: 138684166--138684224 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
138684156 TGTGTTCTTA
*
138684166 ATTCTTGTTTTGATATTCCAGGATATTG
1 ATTCTTGTTTTGATATTCCAAGATATTG
138684194 ATTC-TGTTTTGATATTCCAAGATATTG
1 ATTCTTGTTTTGATATTCCAAGATATTG
138684221 ATTC
1 ATTC
138684225 AAGTTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.49
Consensus pattern (28 bp):
ATTCTTGTTTTGATATTCCAAGATATTG
Found at i:138691699 original size:13 final size:13
Alignment explanation
Indices: 138691681--138691706 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138691671 AAGCAATCGT
138691681 ACATGGGCGTGTC
1 ACATGGGCGTGTC
138691694 ACATGGGCGTGTC
1 ACATGGGCGTGTC
138691707 CCTGCCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (13 bp):
ACATGGGCGTGTC
Found at i:138695626 original size:29 final size:29
Alignment explanation
Indices: 138695594--138695696 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
138695584 ATGACGAGAT
* *
138695594 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
138695623 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
138695652 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
138695681 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
138695697 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:138703633 original size:29 final size:29
Alignment explanation
Indices: 138703601--138703703 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
138703591 ATGACGAGAT
* *
138703601 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
138703630 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * * *
138703659 TGGCACTATGTGTGTGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
138703688 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
138703704 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:138706720 original size:43 final size:43
Alignment explanation
Indices: 138706659--138706827 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 43
138706649 ATAGGATTTC
* *
138706659 CGATATGTG-TTCTCATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATGTGATT-ACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * **
138706702 CGATATGTGATTATATGTAAGACCATGTCTGGGACATCAGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
*
138706745 CG-TATTTGATT-CATGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
138706786 CGATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCA
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
138706828 CTGTATGATA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
41 25 0.24
42 17 0.16
43 59 0.57
44 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:138713407 original size:31 final size:31
Alignment explanation
Indices: 138713386--138713456 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 31
138713376 TTGAGTCCGT
138713386 ACACTTAGTGCTATATATATATTCAGCTCGC
1 ACACTTAGTGCTATATATATATTCAGCTCGC
*
138713417 ACACTTAGTGC--TATATA-A-TCAAACTCGC
1 ACACTTAGTGCTATATATATATTC-AGCTCGC
138713445 ACACTTAGTGCT
1 ACACTTAGTGCT
138713457 GTACAATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
27 2 0.05
28 18 0.49
29 6 0.16
31 11 0.30
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (31 bp):
ACACTTAGTGCTATATATATATTCAGCTCGC
Found at i:138713452 original size:28 final size:27
Alignment explanation
Indices: 138713386--138713485 Score: 92
Period size: 28 Copynumber: 3.4 Consensus size: 27
138713376 TTGAGTCCGT
*
138713386 ACACTTAGTGCTATATATATATTCAGCTCGC
1 ACACTTAGTGCTATATA-ATA---AACTCGC
138713417 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAAT-AAACTCGC
* * *
138713445 ACACTTAGTGCTGTACAATTTTAAACCCGC
1 ACACTTAGTGCTATATAA---TAAACTCGC
138713475 ACACTTAGTGC
1 ACACTTAGTGC
138713486 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
28 22 0.36
30 20 0.33
31 19 0.31
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (27 bp):
ACACTTAGTGCTATATAATAAACTCGC
Found at i:138722071 original size:43 final size:43
Alignment explanation
Indices: 138722013--138722179 Score: 147
Period size: 43 Copynumber: 3.8 Consensus size: 43
138722003 ATATTTGTAG
* * *
138722013 CTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGGCTTTAA
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTTTAA
* * * * *
138722056 CTTCAACCTGCTCCACTACTACTTCAGGAAGATAAAGCTTGCTAT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTT--TAA
* * ** * * **
138722101 CTTTAGTCTGCTCCACTGGAACTTCACGGAGATAAGGCTGATGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCT-TTAA
*
138722145 CTTCAATCTGCTCCACTACTACTT-AGGGAGATAAG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAG
138722180 ATCTACAATC
Statistics
Matches: 95, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
43 43 0.45
44 20 0.21
45 32 0.34
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTTTAA
Found at i:138722177 original size:88 final size:87
Alignment explanation
Indices: 138722013--138722353 Score: 320
Period size: 86 Copynumber: 3.9 Consensus size: 87
138722003 ATATTTGTAG
* * ** *
138722013 CTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGGCT-TTAACTTCAACCTGCTCCACTACTA
1 CTTCAGTCTGCTCCACTGCAACTTCA-GGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACTA
* * * *
138722077 CTTCAGGAAGATAA-AGCTTGCTAT
65 CTT-AGGGAGATAAGATC-TACAAT
* *
138722101 CTTTAGTCTGCTCCACTGGAACTTCACGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACTA
1 CTTCAGTCTGCTCCACTGCAACTTCA-GGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACTA
138722166 CTTAGGGAGATAAGATCTACAAT
65 CTTAGGGAGATAAGATCTACAAT
* * * * *
138722189 CTTCAGTCTACTCCACTACTACTT-AGAGAGAT-AGGATGGTGGC-TCAAATCTGCTCCACTACT
1 CTTCAGTCTGCTCCACTGCAACTTCAG-GAGATAAGGCTGATGGCTTC-AATCTGCTCCACTACT
* *
138722251 GCTTAGGGAGACAAGATCTACAAT
64 ACTTAGGGAGATAAGATCTACAAT
* * * * * *
138722275 CTTCAGCCTACTCCACTACTACTT-AGAGAGAT-AGGATGGTGGC-TCAAATCTGCTCCACTACT
1 CTTCAGTCTGCTCCACTGCAACTTCAG-GAGATAAGGCTGATGGCTTC-AATCTGCTCCACTACT
* *
138722337 GCTTAGGGAGACAAGAT
64 ACTTAGGGAGATAAGAT
138722354 TCGCCATTTT
Statistics
Matches: 227, Mismatches: 22, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
85 2 0.01
86 126 0.56
87 6 0.03
88 67 0.30
89 26 0.11
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (87 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACTAC
TTAGGGAGATAAGATCTACAAT
Found at i:138722193 original size:44 final size:44
Alignment explanation
Indices: 138722145--138723088 Score: 420
Period size: 44 Copynumber: 21.8 Consensus size: 44
138722135 AGGCTGATGG
* *
138722145 CTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
* * * * * * * *
138722189 CTTCAGTCTACTCCACTACTACTTAGAGAGATAGGATGGTGGC--T
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CT-ACAAT
*
138722233 C--AAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
** * * * * * * *
138722275 CTTCAGCCTACTCCACTACTACTTAGAGAGATAGGATGGTGGC--T
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CT-ACAAT
* * *
138722319 C--AAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-TCGCCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAAT
* *
138722361 TTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
** ** * * * * **
138722405 CTTCAGCCCACTCCACTACTGCTTAAGGAGATAAAATGGT---GG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAAT
* * * *
138722447 CTTAAATCTACTCCACTACTGTTTA-GGAGACAAGATTCT-CCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGA-TCTACAAT
* * *
138722490 -TTTAGATCTGCTCCACTACTGCTTAAGGAGAAAAGATCTACAAT
1 CTTCA-ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
* ** * * * **
138722534 CTTTAGCCTACTCCACTACTGCTTAGGGAGA-TAGATGGT---GG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAAT
* * * * *
138722575 CTTAAATCTCCTCTACTACTGCTTAGGGAGACAAGAT-TCGCCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAAT
* * * * *
138722619 TTTCGATCTGCTCCACTAATACTTAGGAAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
** * * * * * **
138722663 CTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGT---GG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAAT
* * * * * *
138722705 CTTAAATCTGCTCCATTACTGCTTAGGGAGACAATATTTTCCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
* * * * * *
138722749 TTTCGATCTGTTCTAGTACTACTTAGGGAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
** * *** * **
138722793 CTTCAGCCTACTCCACTACTGCTTAGGGAGATGGGATGGT---GG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAAT
* * * * *
138722835 CTTAAATCTGCTCTACTACTGCTTAGGAAGACAAGAT-TCGCCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAAT
* *
138722879 TTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
** * * * * * * *
138722923 CTTCAGCCTACTCCACTACTGTTTAGAGAGATAGGATGGT---AG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAAT
* ** * * * *
138722965 CTTAAATCTGCTTTACTACTGTTTAAGGAGACAAGAT-TCGCCAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAAT
* * * * *
138723009 CTTCAATCTGCTCCATTGCTACCTTATGGAGATAAGATCTACAAT
1 CTTCAATCTGCTCCACTACT-GCTTAGGGAGACAAGATCTACAAT
** * * *
138723054 CTTCAGCCTGCTCCATTGCTGCTCAGGGAGACAAG
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAG
138723089 GCTAGTGGCT
Statistics
Matches: 656, Mismatches: 199, Indels: 90
0.69 0.21 0.10
Matches are distributed among these distances:
40 7 0.01
41 37 0.06
42 168 0.26
43 25 0.04
44 369 0.56
45 47 0.07
46 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAAT
Found at i:138722342 original size:42 final size:42
Alignment explanation
Indices: 138722199--138722347 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 42
138722189 CTTCAGTCTA
138722199 CTCCACTACTACTTAGAGAGATAGGATGGTGGCTCAAATCTG
1 CTCCACTACTACTTAGAGAGATAGGATGGTGGCTCAAATCTG
* * * * * * * ** *
138722241 CTCCACTACTGCTTAGGGAGACAAGAT-CT-ACAATCTTCAGCCTA
1 CTCCACTACTACTTAGAGAGATAGGATGGTGGC--TC--AAATCTG
138722285 CTCCACTACTACTTAGAGAGATAGGATGGTGGCTCAAATCTG
1 CTCCACTACTACTTAGAGAGATAGGATGGTGGCTCAAATCTG
* *
138722327 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTACTTAGAGAGA
138722348 CAAGATTCGC
Statistics
Matches: 79, Mismatches: 22, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 47 0.59
44 28 0.35
45 1 0.01
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (42 bp):
CTCCACTACTACTTAGAGAGATAGGATGGTGGCTCAAATCTG
Found at i:138722370 original size:130 final size:130
Alignment explanation
Indices: 138722236--138723136 Score: 1225
Period size: 130 Copynumber: 6.9 Consensus size: 130
138722226 GGTGGCTCAA
*
138722236 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
138722301 AGAGATAGGATGGTGGCTCAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
66 AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
*
138722366 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCCACTCCACTACTGCTTA-
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
** * * * *
138722430 AGGAGATAAAATGGTGGCTTAAATCTACTCCACTACTGTTTA-GGAGACAAGATTCTCCATTTTA
66 A-GAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTC
138722494 G
130 G
* * *
138722495 ATCTGCTCCACTACTGCTTAAGGAGAAAAGATCTACAATCTTTAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * *
138722560 GGAGATA-GATGGTGGCTTAAATCTCCTCTACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
66 AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
* * * *
138722624 ATCTGCTCCACTAATACTTAGGAAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * * **
138722689 GGAGATAGGATGGTGGCTTAAATCTGCTCCATTACTGCTTAGGGAGACAATATTTTCCATTTTCG
66 AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
* * * *
138722754 ATCTGTTCTAGTACTACTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * * *
138722819 GGAGATGGGATGGTGGCTTAAATCTGCTCTACTACTGCTTAGGAAGACAAGATTCGCCATTTTCG
66 AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
*
138722884 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGTTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* ** * * * *
138722949 AGAGATAGGATGGTAGCTTAAATCTGCTTTACTACTGTTTAAGGAGACAAGATTCGCCATCTTCA
66 AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
* * * * * * * * *
138723014 ATCTGCTCCATTGCTACCTTATGGAGATAAGATCTACAATCTTCAGCCTGCTCCATTGCTGCTCA
1 ATCTGCTCCACTACT-GCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTA
* * * * * * *
138723079 GGGAGACAAGGCTAGTGGCTTAAATCTGCTCC-CTTACTACCTCAGGGAGATAAGATTC
65 GAGAGA-TAGGATGGTGGCTTAAATCTGCTCCAC-TACT-GCTTAGGGAGACAAGATTC
138723137 ATCGTCCTTG
Statistics
Matches: 681, Mismatches: 82, Indels: 13
0.88 0.11 0.02
Matches are distributed among these distances:
128 29 0.04
129 174 0.26
130 394 0.58
131 47 0.07
132 23 0.03
133 14 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (130 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
AGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
Found at i:138722386 original size:86 final size:86
Alignment explanation
Indices: 138722149--138722353 Score: 383
Period size: 86 Copynumber: 2.4 Consensus size: 86
138722139 TGATGGCTTC
* *
138722149 AATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGTCTACTCCACTACTACTTA
1 AATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTA
138722214 GAGAGATAGGATGGTGGCTCA
66 GAGAGATAGGATGGTGGCTCA
*
138722235 AATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTA
1 AATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTA
138722300 GAGAGATAGGATGGTGGCTCA
66 GAGAGATAGGATGGTGGCTCA
138722321 AATCTGCTCCACTACTGCTTAGGGAGACAAGAT
1 AATCTGCTCCACTACTGCTTAGGGAGACAAGAT
138722354 TCGCCATTTT
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 116 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (86 bp):
AATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTACTCCACTACTACTTA
GAGAGATAGGATGGTGGCTCA
Found at i:138723056 original size:45 final size:44
Alignment explanation
Indices: 138723006--138723182 Score: 121
Period size: 45 Copynumber: 4.0 Consensus size: 44
138722996 CAAGATTCGC
* *
138723006 CATCTTCAATCTGCTCCATTGCTACCTTATGGAGATAAGATCTA
1 CATCTTCAATCTGCTCCATTGCTACCTCAGGGAGATAAGATCTA
** * * *
138723050 CAATCTTCAGCCTGCTCCATTGCT-GCTCAGGGAGACAAG-GCTA
1 C-ATCTTCAATCTGCTCCATTGCTACCTCAGGGAGATAAGATCTA
* * * *
138723093 -GTGGCTTAAATCTGCTCCCTTACTACCTCAGGGAGATAAGAT-T-
1 CAT--CTTCAATCTGCTCCATTGCTACCTCAGGGAGATAAGATCTA
** * * *
138723136 CATCGTCCTTGATCTGCTCTATTGCTACCTTATGGAGATAAGATCTA
1 CATC-T--TCAATCTGCTCCATTGCTACCTCAGGGAGATAAGATCTA
138723183 TTAATTCACT
Statistics
Matches: 98, Mismatches: 24, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 19 0.19
44 27 0.28
45 49 0.50
46 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
CATCTTCAATCTGCTCCATTGCTACCTCAGGGAGATAAGATCTA
Found at i:138725832 original size:46 final size:46
Alignment explanation
Indices: 138725779--138725954 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
138725769 TGGTTGAGCA
138725779 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
138725825 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
138725870 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
138725918 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCATTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
138725955 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 59 0.55
47 25 0.23
48 2 0.02
50 4 0.04
51 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:138725935 original size:93 final size:93
Alignment explanation
Indices: 138725776--138725945 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
138725766 GAATGGTTGA
* * *
138725776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGCCCGAACTCGTTGAGT
138725841 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
138725869 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGCCCGAACTCGTTGAGT
*
138725934 TGAGTCTGAGTT
66 TGAGTCCGAGTT
138725946 CATTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:138730603 original size:7 final size:8
Alignment explanation
Indices: 138730570--138730604 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
138730560 AAATGCCAGA
138730570 ATTTCGGC
1 ATTTCGGC
138730578 ATTTCGGC
1 ATTTCGGC
*
138730586 TTTTCGGC
1 ATTTCGGC
138730594 ATTT-GGC
1 ATTTCGGC
138730601 ATTT
1 ATTT
138730605 ATCGCTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (8 bp):
ATTTCGGC
Found at i:138737700 original size:31 final size:31
Alignment explanation
Indices: 138737657--138737720 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
138737647 CCTTTTCATA
138737657 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
138737688 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
138737719 TT
1 TT
138737721 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:138737988 original size:23 final size:24
Alignment explanation
Indices: 138737912--138738031 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
138737902 GCTTTATCAT
*
138737912 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
138737937 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
138737962 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
138737985 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
138738009 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
138738032 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 24 0.27
24 34 0.38
25 25 0.28
26 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:138738019 original size:47 final size:47
Alignment explanation
Indices: 138737933--138738030 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
138737923 CCTAGCCTCT
138737933 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
138737981 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
138738028 TTT
1 TTT
138738031 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:138738102 original size:9 final size:9
Alignment explanation
Indices: 138738088--138738144 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
138738078 ATCTCGTGTG
138738088 CATATCATA
1 CATATCATA
*
138738097 CATATCATGTG
1 CATATCA--TA
138738108 CATATCATA
1 CATATCATA
* *
138738117 CATGTCATGTG
1 CATATCA--TA
138738128 CATATCATA
1 CATATCATA
138738137 CATATCAT
1 CATATCAT
138738145 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:138738107 original size:20 final size:20
Alignment explanation
Indices: 138738084--138738146 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
138738074 GAACATCTCG
138738084 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
138738104 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
138738124 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
138738144 TGT
1 TGT
138738147 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:138738211 original size:25 final size:25
Alignment explanation
Indices: 138738183--138738230 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
138738173 ATATATAAAC
* * *
138738183 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
138738208 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
138738231 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:138738661 original size:8 final size:8
Alignment explanation
Indices: 138738648--138738683 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
138738638 AAATGCCAGA
138738648 ATTTCGGC
1 ATTTCGGC
138738656 ATTTCGGC
1 ATTTCGGC
*
138738664 TTTTCGGC
1 ATTTCGGC
138738672 ATTTCGGC
1 ATTTCGGC
138738680 ATTT
1 ATTT
138738684 ATCGCTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (8 bp):
ATTTCGGC
Found at i:138749141 original size:46 final size:46
Alignment explanation
Indices: 138749069--138749194 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
138749059 AACCCGCCCC
* * * * *
138749069 TAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
138749115 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
138749161 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
138749195 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:138749213 original size:46 final size:45
Alignment explanation
Indices: 138749074--138749213 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
138749064 GCCCCTAAGC
* * ** *
138749074 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T-AGT
** **
138749120 GAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T-AGT
*
138749166 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCTAGT
138749212 GA
1 GA
138749214 CATGTCACTT
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
46 76 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCTAGT
Found at i:138754775 original size:40 final size:40
Alignment explanation
Indices: 138754663--138754799 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
138754653 CAGTTATTTG
* *
138754663 TGGCACTTAGTGTGCGATACGACATAGCTTCT-GCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAG-TTTTGGCTATATA
* ** * *
138754703 CGGCACTTAGCATGCGATTCAACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGTTTTGGCTATATA
* * * *
138754743 TGGCACTTAGTGTGTGATTTGAGATAGTTTTGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGTTTTGGCTATATA
138754783 TGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
138754800 GATATCGAGT
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 2 0.03
40 77 0.97
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGTTTTGGCTATATA
Found at i:138754820 original size:28 final size:28
Alignment explanation
Indices: 138754780--138754839 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
138754770 TTTTGGCTAT
* *
138754780 GTATGGCACTTAGTGTGCGAGATATCGA
1 GTATGGCACTTAGTGTGCAAGACATCGA
*
138754808 GTATGGCACTTAGTGTGCAAGACATTGA
1 GTATGGCACTTAGTGTGCAAGACATCGA
138754836 GTAT
1 GTAT
138754840 TCAACGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (28 bp):
GTATGGCACTTAGTGTGCAAGACATCGA
Found at i:138764230 original size:42 final size:43
Alignment explanation
Indices: 138764127--138764244 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
138764117 TTATGTGGAA
*
138764127 AAATGCCACTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
1 AAATGCCACTAAAGAACATGACCTTTAGCGGCACTTTTCCCAC
* * **
138764170 AAATGCCACTAACGAACATGACCTCTAGCGGTGC-TTTCCTCAC
1 AAATGCCACTAAAGAACATGACCTTTAGCGGCACTTTTCC-CAC
*
138764213 AAATGCC-GTAAAGAACATGACCTTTAGCGGCA
1 AAATGCCACTAAAGAACATGACCTTTAGCGGCA
138764245 TTTGTGGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 25 0.39
43 39 0.61
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
AAATGCCACTAAAGAACATGACCTTTAGCGGCACTTTTCCCAC
Found at i:138766627 original size:42 final size:42
Alignment explanation
Indices: 138766580--138766663 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
138766570 GTCCAGTGTG
138766580 AATTAATCGAGAGAAGTTCACCATTGTAAAAACAAATTGATC
1 AATTAATCGAGAGAAGTTCACCATTGTAAAAACAAATTGATC
138766622 AATTAATCGAGAGAAGTTCACCATTGTAAAAACAAATTGATC
1 AATTAATCGAGAGAAGTTCACCATTGTAAAAACAAATTGATC
138766664 TTTTTTTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.26
Consensus pattern (42 bp):
AATTAATCGAGAGAAGTTCACCATTGTAAAAACAAATTGATC
Found at i:138774624 original size:27 final size:27
Alignment explanation
Indices: 138774593--138774650 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
138774583 ACAATTATAC
138774593 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
*
138774620 ATCACATAGGGGCATAATAGTCATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
138774647 ATCA
1 ATCA
138774651 ATTAAGGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
ATCACATAGGGGCATAACAGTCATTTT
Found at i:138775626 original size:2 final size:2
Alignment explanation
Indices: 138775619--138775643 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
138775609 AAGACTAGTC
138775619 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
138775644 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:138777070 original size:39 final size:39
Alignment explanation
Indices: 138777016--138777110 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
138777006 AAACCAAGTA
** * *
138777016 CCTTCGGGGTTTAGCCGGATATAGCT-TCTCGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
* *
138777055 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
138777095 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
138777111 CTGTGACATC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 15 0.31
40 33 0.69
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.28
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:138778663 original size:29 final size:29
Alignment explanation
Indices: 138778630--138778703 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
138778620 GTGACGAGAT
138778630 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
138778659 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
138778688 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
138778704 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:138778719 original size:29 final size:28
Alignment explanation
Indices: 138778687--138778761 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
138778677 CTGGAAATAT
* *
138778687 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
138778716 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
138778744 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
138778762 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:138778730 original size:58 final size:57
Alignment explanation
Indices: 138778630--138778761 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
138778620 GTGACGAGAT
* * * * * *
138778630 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
138778688 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
138778745 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
138778762 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:138789930 original size:29 final size:29
Alignment explanation
Indices: 138789897--138790028 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
138789887 GTGACGAGAT
*
138789897 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
138789926 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
138789955 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
138789984 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
138790013 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
138790029 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:138793053 original size:10 final size:10
Alignment explanation
Indices: 138793038--138793066 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
138793028 CATTCCTTTC
138793038 GCTCTCCTAT
1 GCTCTCCTAT
138793048 GCTCTCCTAT
1 GCTCTCCTAT
138793058 GCTCTCCTA
1 GCTCTCCTA
138793067 AGTATAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.41, G:0.10, T:0.38
Consensus pattern (10 bp):
GCTCTCCTAT
Found at i:138806191 original size:30 final size:30
Alignment explanation
Indices: 138806155--138806214 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
138806145 GGACAATTCA
138806155 AGAGTCATTTTTCAAGAATTTACGGTCATT
1 AGAGTCATTTTTCAAGAATTTACGGTCATT
*
138806185 AGAGTCATTTTTCAAGCATTTACGGTCATT
1 AGAGTCATTTTTCAAGAATTTACGGTCATT
138806215 CATTCAGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (30 bp):
AGAGTCATTTTTCAAGAATTTACGGTCATT
Found at i:138810514 original size:40 final size:39
Alignment explanation
Indices: 138810349--138810532 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
138810339 AAATTGAATG
* * *
138810349 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
138810389 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
138810429 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
138810469 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
138810508 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
138810533 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:138810557 original size:80 final size:81
Alignment explanation
Indices: 138810389--138810577 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
138810379 GCTGGAAATT
* * * *
138810389 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
138810454 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
138810470 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
138810533 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
138810549 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
138810578 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:138818633 original size:40 final size:39
Alignment explanation
Indices: 138818468--138818651 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
138818458 AAATTGAATG
* * *
138818468 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
138818508 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
138818548 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
138818588 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
138818627 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
138818652 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:138818676 original size:80 final size:81
Alignment explanation
Indices: 138818508--138818696 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
138818498 GCTGGAAATT
* * * *
138818508 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
138818573 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
138818589 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
138818652 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
138818668 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
138818697 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:138822187 original size:35 final size:35
Alignment explanation
Indices: 138822149--138822312 Score: 179
Period size: 35 Copynumber: 4.7 Consensus size: 35
138822139 TCCATGGCAA
* *
138822149 AGTTGTGAAACGTAGGTATGGTATCATCCATACTA
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* *
138822184 AGTTGTGAAA-GATAGGTATGGTATTAACGATACTG
1 AGTTGTGAAACG-TAGGTATGGTATTATCCATACTG
* *
138822219 AGTTTTGAAACATAGGTATGGTATTATCCATACTG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
** * * * *
138822254 AGTTAAGAAATGTAGGTATGGCATT-CCCATACCG
1 AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
* *
138822288 AGTTGTTAAATGTAGGTATGGTATT
1 AGTTGTGAAACGTAGGTATGGTATT
138822313 TCAATGAGGA
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
34 29 0.27
35 79 0.73
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (35 bp):
AGTTGTGAAACGTAGGTATGGTATTATCCATACTG
Found at i:138822291 original size:34 final size:35
Alignment explanation
Indices: 138822231--138822308 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 35
138822221 TTTTGAAACA
* * *
138822231 TAGGTATGGTATTATCCATACTGAGTTAAGAAATG
1 TAGGTATGGCATTACCCATACCGAGTTAAGAAATG
***
138822266 TAGGTATGGCATT-CCCATACCGAGTTGTTAAATG
1 TAGGTATGGCATTACCCATACCGAGTTAAGAAATG
138822300 TAGGTATGG
1 TAGGTATGG
138822309 TATTTCAATG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 25 0.68
35 12 0.32
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (35 bp):
TAGGTATGGCATTACCCATACCGAGTTAAGAAATG
Found at i:138824276 original size:24 final size:24
Alignment explanation
Indices: 138824249--138824316 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
138824239 CATAATCGGA
138824249 AAGTTCACAAAGAACCATATC-GAG
1 AAGTTCACAAAGAACCATATCAG-G
*
138824273 AAGTTCACAAAGAATCATATCAGG
1 AAGTTCACAAAGAACCATATCAGG
138824297 AAGTTCACAAAGAACCATAT
1 AAGTTCACAAAGAACCATAT
138824317 TGGCAAACTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.47, C:0.19, G:0.15, T:0.19
Consensus pattern (24 bp):
AAGTTCACAAAGAACCATATCAGG
Found at i:138832915 original size:29 final size:29
Alignment explanation
Indices: 138832809--138832970 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
138832799 GTGACGAGAT
*
138832809 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
138832838 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
138832867 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
138832896 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
138832925 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
138832952 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
138832971 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:138840979 original size:29 final size:29
Alignment explanation
Indices: 138840946--138841048 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
138840936 GTGACGAGAT
138840946 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
138840975 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
138841004 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
138841033 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
138841049 AGCTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:138842417 original size:40 final size:40
Alignment explanation
Indices: 138842368--138842535 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
138842358 TCTTCGGAAT
* * *
138842368 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
138842407 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
138842447 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
138842487 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
138842527 TTAGCCCGG
1 TTAGCCCGG
138842536 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:138854337 original size:17 final size:17
Alignment explanation
Indices: 138854315--138854353 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
138854305 GCAATCTCTA
*
138854315 TCAGTTTTGCTACAGTC
1 TCAGTTTTACTACAGTC
*
138854332 TCAGTTTTACTACAGTT
1 TCAGTTTTACTACAGTC
138854349 TCAGT
1 TCAGT
138854354 ATACACTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (17 bp):
TCAGTTTTACTACAGTC
Found at i:138854427 original size:25 final size:25
Alignment explanation
Indices: 138854371--138854444 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
138854361 GCCTACATTG
* *
138854371 TTTTCACAGTAAACTA-CTTACAGTA
1 TTTTCAGAATAAACTATC-TACAGTA
*
138854396 GTTTCAGAATAAACTATCTACAGTA
1 TTTTCAGAATAAACTATCTACAGTA
**
138854421 TTTTCAGTTTAAACTTATC-ACAGT
1 TTTTCAGAATAAAC-TATCTACAGT
138854445 GCCAGAATAC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 36 0.88
26 5 0.12
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (25 bp):
TTTTCAGAATAAACTATCTACAGTA
Found at i:138858600 original size:40 final size:40
Alignment explanation
Indices: 138858548--138858729 Score: 328
Period size: 40 Copynumber: 4.5 Consensus size: 40
138858538 TCAAATCTCA
*
138858548 CACACTAAGTGCCATATATAGCCGGAGCTATGTTGAATCG
1 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
138858588 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
138858628 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
* *
138858668 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
1 CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
*
138858708 CACACTAAGTGCCACATATAGC
1 CACACTAAGTGCCATATATAGC
138858730 TAATTTGTCG
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCG
Found at i:138858657 original size:80 final size:80
Alignment explanation
Indices: 138858503--138858729 Score: 337
Period size: 80 Copynumber: 2.8 Consensus size: 80
138858493 ACTCGATGTC
* * * ** * *
138858503 TCGCACACTAAGTGTCTTACATAGTGGAAGCTATCTCAAATCTCACACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA--TCACACACTAAGTGCCATATATA
*
138858568 GCCGGAGCTATGTTGAA
64 GCCGGAGCTATGTCGAA
* *
138858585 TCGCACACTAAGTGCCATATATAGCCGGAGCTATGTCGAATCGCACACTAAGTGCCATATATAGC
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCACACACTAAGTGCCATATATAGC
138858650 CGGAGCTATGTCGAA
66 CGGAGCTATGTCGAA
*
138858665 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCACACACTAAGTGCCACATATAGC
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCACACACTAAGTGCCATATATAGC
138858730 TAATTTGTCG
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 100 0.76
82 32 0.24
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCACACACTAAGTGCCATATATAGC
CGGAGCTATGTCGAA
Found at i:138862696 original size:10 final size:11
Alignment explanation
Indices: 138862672--138862697 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
138862662 GGAACTATAC
138862672 AAAATTCCAGA
1 AAAATTCCAGA
138862683 AAAATTCCAGA
1 AAAATTCCAGA
138862694 AAAA
1 AAAA
138862698 AAATCACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.15, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAATTCCAGA
Found at i:138864823 original size:56 final size:56
Alignment explanation
Indices: 138864735--138864848 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
138864725 ATTATCAGGC
*
138864735 CAAATCTCATGGCTAAATACATATCAAACACATCTGCATCAATCACCAAAATTACT
1 CAAATCTCATAGCTAAATACATATCAAACACATCTGCATCAATCACCAAAATTACT
*
138864791 CAAATCTCATAGCTAAATACATATCAAGCACATCTGCATCAATCACCAAAATTACT
1 CAAATCTCATAGCTAAATACATATCAAACACATCTGCATCAATCACCAAAATTACT
138864847 CA
1 CA
138864849 TACTCAACAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.43, C:0.27, G:0.05, T:0.25
Consensus pattern (56 bp):
CAAATCTCATAGCTAAATACATATCAAACACATCTGCATCAATCACCAAAATTACT
Found at i:138865560 original size:42 final size:40
Alignment explanation
Indices: 138865496--138865680 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
138865486 TCGATGTCTT
* * * * *
138865496 GCACACTAAGTGTCGTACATAGCTGAAGCTATCTCAAATCTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAA--TC
* * *
138865538 GCACACTAAGTGTCATATATAGCCAAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
* *
138865578 GCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
* *
138865618 ACACACTAAGCGCCATATATAGCCGAAGCTATCTCGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
* *
138865658 GCACACTGAGTGCCACATATAGC
1 GCACACTAAGTGCCATATATAGC
138865681 TGATTTGTCG
Statistics
Matches: 128, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 96 0.75
42 32 0.25
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATC
Found at i:138865595 original size:40 final size:40
Alignment explanation
Indices: 138865536--138865680 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
138865526 ATCTCAAATC
*
138865536 TCGCACACTAAGTGTCATATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
138865576 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
* * * *
138865616 TCACACACTAAGCGCCATATATAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
* *
138865656 TCGCACACTGAGTGCCACATATAGC
1 TCGCACACTAAGTGCCATATATAGC
138865681 TGATTTGTCG
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
Found at i:138868845 original size:40 final size:40
Alignment explanation
Indices: 138868790--138868977 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
138868780 ATAACCACAA
* * *
138868790 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
138868830 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
138868870 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
138868910 GCACAAATGCCTTCGGGTCTTAGCCTGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-AGCAACTC
* *
138868950 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
138868978 GTATCATTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:138868907 original size:80 final size:79
Alignment explanation
Indices: 138868770--138868977 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 79
138868760 TCTTTGGAAT
* * *
138868770 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
138868834 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
*
138868849 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
138868914 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
138868929 TTAGCCTGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
138868978 GTATCATTCA
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.04
80 111 0.95
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:138871761 original size:40 final size:39
Alignment explanation
Indices: 138871705--138871888 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
138871695 TATAACCACA
* * *
138871705 AGCAC-AATGCCTTCGGGTCTTAACCCGGATTTGGTATCT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATA-CT
* *
138871744 TGCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGA-TACT
* * *
138871784 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAT-ACT
* *
138871824 AGCATAAATGCCTTCGGGACTTAGCCCGGATAT-ATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGA-T-ACT
* *
138871864 AGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGC
138871889 TCGGGTATCA
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.04
40 122 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATACT
Found at i:138871874 original size:80 final size:80
Alignment explanation
Indices: 138871677--138871888 Score: 218
Period size: 80 Copynumber: 2.7 Consensus size: 80
138871667 AACCGAGCTT
* * * * * * * **
138871677 CTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AATGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
138871740 ATCTTGCACAAATGC
66 ATCTAGCACAAATGC
* * *
138871755 CTTCGGGTCTTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
138871820 CA-CTAGCATAAATGC
66 -ATCTAGCACAAATGC
* *
138871835 CTTCGGGACTTAGCCCGGATAT-ATTC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CTTCGGGACTTAGCCCGGATATGA--CAACTAGCACAAATGCCTTCGGGTCTTAGC
138871889 TCGGGTATCA
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
78 10 0.09
79 17 0.15
80 82 0.74
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATGACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
ATCTAGCACAAATGC
Found at i:138878623 original size:12 final size:12
Alignment explanation
Indices: 138878608--138878632 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
138878598 ATATTATTCC
138878608 TCATATTTATTA
1 TCATATTTATTA
138878620 TCATATTTATTA
1 TCATATTTATTA
138878632 T
1 T
138878633 AATTGGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATATTTATTA
Found at i:138883803 original size:40 final size:35
Alignment explanation
Indices: 138883688--138883782 Score: 190
Period size: 35 Copynumber: 2.7 Consensus size: 35
138883678 CATGGAAAAG
138883688 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
138883723 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
138883758 TGTGAAATGTAGGTATGGTATTATC
1 TGTGAAATGTAGGTATGGTATTATC
138883783 AAATCCATAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 60 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
Found at i:138885588 original size:40 final size:40
Alignment explanation
Indices: 138885480--138885689 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
138885470 CGGGATTTAA
* * * * *
138885480 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
138885520 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138885560 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138885600 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138885640 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138885680 CCGGATATAT
1 CCGGATATAT
138885690 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:138893675 original size:43 final size:40
Alignment explanation
Indices: 138893511--138893723 Score: 284
Period size: 40 Copynumber: 5.2 Consensus size: 40
138893501 CGGGATTTAA
* * * * *
138893511 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
138893551 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138893591 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138893631 CCGGATATATCAACTCGCACGAATGCTGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAA---TGCCTTCGGGTCTTAGC
138893674 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
138893714 CCGGATATAT
1 CCGGATATAT
138893724 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 112 0.73
43 40 0.26
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:138893686 original size:83 final size:79
Alignment explanation
Indices: 138893511--138893723 Score: 291
Period size: 83 Copynumber: 2.6 Consensus size: 79
138893501 CGGGATTTAA
* * * * * * * * *
138893511 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATAACTCGCACAAAGG
138893576 CCTTCGGGTCTTAGC
65 CCTTCGGGTCTTAGC
*
138893591 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT-AACTCGCAC-AAAG
138893656 CTGCCTTCGGGTCTTAGC
64 --GCCTTCGGGTCTTAGC
138893674 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
138893724 TTCCAATGTT
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 1 0.01
80 49 0.41
81 3 0.03
83 66 0.55
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (79 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATAACTCGCACAAAGGC
CTTCGGGTCTTAGC
Found at i:138901141 original size:40 final size:40
Alignment explanation
Indices: 138901096--138901259 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
138901086 CGGAATATAA
138901096 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
138901136 CCGGATAGAAT-A-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
138901174 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138901214 CCGGATATAATTTCCAGCATAATTGTCTTCGGG--TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138901252 CCGGATAT
1 CCGGATAT
138901260 CATTCAATTC
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
37 1 0.01
38 42 0.41
39 2 0.02
40 57 0.56
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138907211 original size:40 final size:39
Alignment explanation
Indices: 138907046--138907229 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
138907036 AAATTGAATG
* * *
138907046 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
138907086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
138907126 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
138907166 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
138907205 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
138907230 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:138907254 original size:80 final size:81
Alignment explanation
Indices: 138907086--138907274 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
138907076 GCTGGAAATT
* * * *
138907086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
138907151 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
138907167 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
138907230 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
138907246 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
138907275 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:138912425 original size:40 final size:40
Alignment explanation
Indices: 138912380--138912546 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
138912370 CGGAATATAA
138912380 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138912420 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
138912460 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
138912500 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138912539 CCGGATAT
1 CCGGATAT
138912547 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138916134 original size:29 final size:29
Alignment explanation
Indices: 138916102--138916233 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
138916092 ATAGTGAATC
138916102 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
138916131 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
138916161 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
138916190 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
138916219 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
138916234 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:138916243 original size:59 final size:59
Alignment explanation
Indices: 138916102--138916233 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
138916092 ATAGTGAATC
138916102 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
138916161 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
138916219 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
138916234 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:138923062 original size:6 final size:6
Alignment explanation
Indices: 138923043--138923206 Score: 113
Period size: 6 Copynumber: 26.7 Consensus size: 6
138923033 AAGAAACATT
* *
138923043 ATCAGA A-CTAGA ATTAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAGGTA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * * *
138923093 A-CTGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
138923141 ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
138923191 ATCAAA ATCAGA ATCA
1 ATCAGA ATCAGA ATCA
138923207 ATATTACGTA
Statistics
Matches: 124, Mismatches: 20, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
5 10 0.08
6 98 0.79
7 10 0.08
8 6 0.05
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:138923064 original size:18 final size:19
Alignment explanation
Indices: 138923043--138923206 Score: 100
Period size: 19 Copynumber: 8.9 Consensus size: 19
138923033 AAGAAACATT
* *
138923043 ATCAGAACT-AGAATTAGA
1 ATCAGAAATCAGAATCAGA
138923061 ATCA-AAATCAGAATCAGA
1 ATCAGAAATCAGAATCAGA
*
138923079 ATCAG-AATCAGGTAA-CTGA
1 ATCAGAAATCA-G-AATCAGA
*
138923098 ATCA-AAATCAGAATCAGT
1 ATCAGAAATCAGAATCAGA
* *
138923116 ATCAGGTAA-CAGAATCAAA
1 ATCA-GAAATCAGAATCAGA
*
138923135 ATCA-AAATCAGTATCAGGTA
1 ATCAGAAATCAGAATCA-G-A
*
138923155 AT-AG-AATCAAAATCAGA
1 ATCAGAAATCAGAATCAGA
*
138923172 ATCAG-TATCAGGTAA-CAGA
1 ATCAGAAATCA-G-AATCAGA
138923191 ATCA-AAATCAGAATCA
1 ATCAGAAATCAGAATCA
138923207 ATATTACGTA
Statistics
Matches: 113, Mismatches: 16, Indels: 34
0.69 0.10 0.21
Matches are distributed among these distances:
17 12 0.11
18 45 0.40
19 47 0.42
20 9 0.08
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (19 bp):
ATCAGAAATCAGAATCAGA
Found at i:138923107 original size:31 final size:31
Alignment explanation
Indices: 138923066--138923235 Score: 236
Period size: 31 Copynumber: 5.5 Consensus size: 31
138923056 TTAGAATCAA
* *
138923066 AATCAGAATCAGAATCAGAATCAGGTAACTG
1 AATCAAAATCAGAATCAGTATCAGGTAACTG
*
138923097 AATCAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGTATCAGGTAACTG
*
138923128 AATCAAAATCAAAATCAGTATCAGGTAA-TAG
1 AATCAAAATCAGAATCAGTATCAGGTAACT-G
*
138923159 AATCAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGTATCAGGTAACTG
* * *
138923190 AATCAAAATCAGAATCAATATTACGTAACAT-
1 AATCAAAATCAGAATCAGTATCAGGTAAC-TG
138923221 AATCAAAATCAGAAT
1 AATCAAAATCAGAAT
138923236 GTGAATGCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
31 125 1.00
ACGTcount: A:0.50, C:0.15, G:0.14, T:0.21
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGTATCAGGTAACTG
Found at i:138923144 original size:25 final size:25
Alignment explanation
Indices: 138923069--138923170 Score: 73
Period size: 25 Copynumber: 3.8 Consensus size: 25
138923059 GAATCAAAAT
* *
138923069 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAAAATCAAAATCAGGTAA
*
138923094 CTGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATC--AA--A--ATCAGGTAA
*
138923125 CAGAATCAAAATCAAAATCA-GTAT
1 CAGAATCAAAATCAAAATCAGGTAA
*
138923149 CAGGTAAT-AGAATCAAAATCAG
1 CA-G-AATCAAAATCAAAATCAG
138923171 AATCAGTATC
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
24 5 0.08
25 28 0.45
26 3 0.05
27 2 0.03
29 3 0.05
31 21 0.34
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.20
Consensus pattern (25 bp):
CAGAATCAAAATCAAAATCAGGTAA
Found at i:138923354 original size:27 final size:26
Alignment explanation
Indices: 138923318--138923424 Score: 88
Period size: 27 Copynumber: 4.0 Consensus size: 26
138923308 AGTAAGACTG
*
138923318 CCAGAACAGATAGTGTGACAGAGTCA
1 CCAGAACAGATAGTGTGACAGAGCCA
* *
138923344 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATAGTGTGACAGAGCCA
* * * * *
138923371 CCAGAACAAATATTTGTGGCATAACCA
1 CCAGAACAGATA-GTGTGACAGAGCCA
* * *
138923398 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATAGTGTGACAGAGCCA
138923425 TTTAACAGAA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.76
28 5 0.07
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAGTGTGACAGAGCCA
Found at i:138924018 original size:27 final size:27
Alignment explanation
Indices: 138923988--138924295 Score: 316
Period size: 27 Copynumber: 11.4 Consensus size: 27
138923978 AGGGGCAAGA
* * *
138923988 CGGTAATTTTTCCCCACAAGGGTATCT
1 CGGTAATTTTACCCTACAAGGGTATTT
*
138924015 CGGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
*
138924042 TGGT-ATTTCTACCCTACAAGGGTATTT
1 CGGTAATTT-TACCCTACAAGGGTATTT
* * * *
138924069 CGGTAATTCTATCCTATAGGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
* * *
138924096 CAGTAATTTTACCCTATAGGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
** *
138924123 CAAT-ATTTCTACCCTACAAGGTTATTT
1 CGGTAATTT-TACCCTACAAGGGTATTT
* *
138924150 CGGT-ATTTCTACCTTACATGGGTATTT
1 CGGTAATTT-TACCCTACAAGGGTATTT
* * **
138924177 CAGTAATTCTACATTACAAGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
* * * *
138924204 CGATAATTCTACCTTACAGGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
*
138924231 CGGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
* *
138924258 CAGTAATTCTACCCTACAAGGGTATTT
1 CGGTAATTTTACCCTACAAGGGTATTT
138924285 CGGTAATTTTA
1 CGGTAATTTTA
138924296 TAAATCGAGA
Statistics
Matches: 240, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.03
27 227 0.95
28 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
CGGTAATTTTACCCTACAAGGGTATTT
Found at i:138924061 original size:54 final size:54
Alignment explanation
Indices: 138924003--138924292 Score: 357
Period size: 54 Copynumber: 5.4 Consensus size: 54
138923993 ATTTTTCCCC
* *
138924003 ACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * * *
138924057 ACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCAGTAATTT-TACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGT-ATTTCTACCCT
* * ** * * *
138924111 ATAGGGGTATTTCAATATTTCTACCCTACAAGGTTATTTCGGTATTTCTACCTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * ** * * *
138924165 ACATGGGTATTTCAGTAATTCTACATTACAAGGGTATTTCGATAATTCTACCTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
* * *
138924219 ACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
138924273 ACAAGGGTATTTCGGTAATT
1 ACAAGGGTATTTCGGTAATT
138924293 TTATAAATCG
Statistics
Matches: 200, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 4 0.02
54 192 0.96
55 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
Found at i:138924292 original size:81 final size:81
Alignment explanation
Indices: 138923988--138924292 Score: 385
Period size: 81 Copynumber: 3.8 Consensus size: 81
138923978 AGGGGCAAGA
* * * * * * * *
138923988 CGGTAATTTTTCCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
138924053 CCCTACAAGGGTATTT
66 CCCTACAAGGGTATTT
* * * * * * * *
138924069 CGGTAATTCTATCCTATAGGGGTATTTCAGTAATTTTACCCTATAGGGGTATTTCAATATTTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
*
138924134 CCCTACAAGGTTATTT
66 CCCTACAAGGGTATTT
* * * **
138924150 CGGTATTTCTACCTTACATGGGTATTTCAGTAATTCTACATTACAAGGGTATTTCGATAATTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
* *
138924215 CCTTACAGGGGTATTT
66 CCCTACAAGGGTATTT
*
138924231 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATT
1 CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATT
138924293 TTATAAATCG
Statistics
Matches: 188, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 188 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTA
CCCTACAAGGGTATTT
Found at i:138924417 original size:80 final size:78
Alignment explanation
Indices: 138924278--138924564 Score: 321
Period size: 80 Copynumber: 3.6 Consensus size: 78
138924268 ACCCTACAAG
* * * **
138924278 GGTATTTCGGTAATTTTATAAA-TCGAGAGTATTTTAGG-AATTTTACAATC-AACGATATTTCG
1 GGTATTTCGGTAATTTTATAAACT-G-GGGTACTTT-GGTAATTTTACAATCGAA-GGTATTTTA
138924340 GTAATTTTACAAATCGA
62 GTAATTTTACAAATCGA
* *
138924357 GGATATTTGGGTATTTTTATAAACTGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTTAGT
1 GG-TATTTCGGTAATTTTATAAACTGGGGTACTTTGGTAATTTTACAA-TCGAAGGTATTTTAGT
*
138924422 AATTTTATAAATCGA
64 AATTTTACAAATCGA
* ** * * *
138924437 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTTAG
1 -GGTATTTCGGTAATTTTATAAACTG-GGGTACTTTGGTAATTTTAC-AATCGAAGGTATTTTAG
138924502 TAATTTTAC-AATCGA
63 TAATTTTACAAATCGA
*
138924517 CGGTATTTCGGTAATTTTATAAACCGGGGTACTTTGGTAATTTTACAA
1 -GGTATTTCGGTAATTTTATAAACTGGGGTACTTTGGTAATTTTACAA
138924565 CTAGGGGTAT
Statistics
Matches: 176, Mismatches: 24, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.02
79 37 0.21
80 88 0.50
81 45 0.26
82 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (78 bp):
GGTATTTCGGTAATTTTATAAACTGGGGTACTTTGGTAATTTTACAATCGAAGGTATTTTAGTAA
TTTTACAAATCGA
Found at i:138924547 original size:26 final size:27
Alignment explanation
Indices: 138924276--138924585 Score: 262
Period size: 27 Copynumber: 11.7 Consensus size: 27
138924266 CTACCCTACA
*
138924276 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
138924303 AGAGTATTTTAGG-AATTTTAC-AATCA
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* *
138924329 ACGATATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
138924356 AGGATATTTGGGTATTTTTATAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
*
138924383 -GGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
* ** *
138924409 AAGGTATTTTAGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
138924436 AGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
138924463 AGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
**
138924490 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
138924516 ACGGTATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
138924543 -GGGTACTTT-GGTAATTTTACAACTAG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
*
138924569 -GGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
138924586 GGTAAACTAA
Statistics
Matches: 228, Mismatches: 42, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
25 8 0.04
26 87 0.38
27 127 0.56
28 6 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:138926552 original size:6 final size:6
Alignment explanation
Indices: 138926534--138926732 Score: 88
Period size: 6 Copynumber: 32.3 Consensus size: 6
138926524 AAGAAACATT
** *
138926534 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTTGA ATCAGA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * * * *
138926582 ATTAG- GTGACAAA ATCAAA ATCAGA ATTAGT ATCAAGTA A-CCGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA
* * * *
138926632 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATTAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
138926683 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCA-A ATTCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA A-TCAGA
138926731 AT
1 AT
138926733 GTGAATGCAA
Statistics
Matches: 144, Mismatches: 30, Indels: 38
0.68 0.14 0.18
Matches are distributed among these distances:
5 12 0.08
6 111 0.77
7 16 0.11
8 5 0.03
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:138926607 original size:31 final size:31
Alignment explanation
Indices: 138926569--138926732 Score: 247
Period size: 31 Copynumber: 5.3 Consensus size: 31
138926559 TCAGAATTTG
* * * *
138926569 AATCAGAATTAGAATTAGGTGACAAAATCAA
1 AATCAGAATTAGTATCAGGTAACAGAATCAA
* *
138926600 AATCAGAATTAGTATCAAGTAACCGAATCAA
1 AATCAGAATTAGTATCAGGTAACAGAATCAA
*
138926631 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATTAGTATCAGGTAACAGAATCAA
138926662 AATCAGAATTAGTATCAGGTAACAGAATCAA
1 AATCAGAATTAGTATCAGGTAACAGAATCAA
*
138926693 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATTAGTATCAGGTAACAGAATCAA
*
138926724 ATTCAGAAT
1 AATCAGAAT
138926733 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 121 1.00
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.22
Consensus pattern (31 bp):
AATCAGAATTAGTATCAGGTAACAGAATCAA
Found at i:138926889 original size:27 final size:26
Alignment explanation
Indices: 138926852--138926959 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
138926842 AGCATGGCTG
*
138926852 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGACAAAGCCA
* *
138926878 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAAAGCCA
* * * *
138926905 CCAGAATAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAAAGCCA
* *
138926932 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAAAGCCA
138926959 C
1 C
138926960 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.14
27 55 0.80
28 4 0.06
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAAAGCCA
Found at i:138927372 original size:16 final size:16
Alignment explanation
Indices: 138927351--138927381 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
138927341 ATCCCAACCC
*
138927351 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
138927367 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
138927382 CCTATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:138927553 original size:27 final size:27
Alignment explanation
Indices: 138927523--138927881 Score: 334
Period size: 27 Copynumber: 13.4 Consensus size: 27
138927513 AGGCAAAATA
*
138927523 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
*
138927550 GTAATTCTACCCTAC-AGGGATATTTCG
1 GTAATTTTACCCTACAAGGG-TATTTCG
*
138927577 GTATTTTTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* * * * *
138927604 GTAATTCTATCCTATAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCG
*
138927631 ATAATTTTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* * *
138927658 AT-ATTTCTACCCTACAAGGTTATTTTG
1 GTAATTT-TACCCTACAAGGGTATTTCG
* **
138927685 GT-ATTTCTACCTTAC-AGGGTATTTTA
1 GTAATTT-TACCCTACAAGGGTATTTCG
* ** * *
138927711 GTAATTCTACATTACAGGGGTATTTTG
1 GTAATTTTACCCTACAAGGGTATTTCG
* * *
138927738 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* **
138927765 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCG
*
138927792 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
*** *
138927819 GTAATTTTA-TAAATCAAGGGTATTTCA
1 GTAATTTTACCCTA-CAAGGGTATTTCG
** *
138927846 GTAATTTTACAAT-CAACGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
138927872 GTAATTTTAC
1 GTAATTTTAC
138927882 AAATCGAGGA
Statistics
Matches: 280, Mismatches: 45, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
26 48 0.17
27 227 0.81
28 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCG
Found at i:138927837 original size:54 final size:53
Alignment explanation
Indices: 138927521--138927961 Score: 304
Period size: 54 Copynumber: 8.2 Consensus size: 53
138927511 AGAGGCAAAA
* **
138927521 TAGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCT-ACAGGGATATTT
1 TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACAATCA-AGGG-TATTT
** * * *
138927575 CGGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTATCCTAT-AGGGGTATTT
1 TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTA--CAATCAAGGGTATTT
* * * * ** *
138927629 CAATAATTTTACCCTACAAGGGTATTTCGATATTTCTACCCTACAAGGTTATTT
1 TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACAAT-CAAGGGTATTT
* * ** * *
138927683 TGGT-ATTTCTACCTTAC-AGGGTATTTTAGTAATTCTACATTACAGGGGTATTT
1 TAGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACAAT-CAAGGGTATTT
* * **
138927736 T-GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTT
1 TAG-TAATTTTACCCTACAAGGGTATTTCGGTAATTCTACAAT-CAAGGGTATTT
* * *
138927790 TAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTATAAATCAAGGGTATTT
1 TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTA-CAATCAAGGGTATTT
* ** * * * *
138927844 CAGTAATTTTACAAT-CAACGGTATTTCGGTAATTTTACAAATCGAGGATATTT
1 TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTAC-AATCAAGGGTATTT
** *** ** * *
138927897 GGGTAATTTTA-TAAACTGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTT
1 TAGTAATTTTACCCTAC-AAGGGTA-TTTCGGTAATTCTACAA-TCAAGGGTATTT
138927951 TAGTAATTTTA
1 TAGTAATTTTA
138927962 GAAATCGCGG
Statistics
Matches: 313, Mismatches: 59, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
52 4 0.01
53 86 0.27
54 212 0.68
55 8 0.03
56 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (53 bp):
TAGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACAATCAAGGGTATTT
Found at i:138927880 original size:53 final size:53
Alignment explanation
Indices: 138927755--138928120 Score: 305
Period size: 54 Copynumber: 6.8 Consensus size: 53
138927745 TACCCTACAG
* ** * * * **
138927755 GGGTATTTCGGTAATTCTAC-CCTACAAGGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCAGTAATTTTACAAT-CAA
* *
138927809 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTACAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAA
* * ** * * **
138927862 CGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACTGG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC-AA
* * * **
138927916 GGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAGAAATCGC
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA-CAATCAA
* *
138927970 GGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTC-GATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATC-GAGGGTATTTCAG-TAATTTTAC-AATCAA
** * * * *
138928024 GGGTATTTTAGTAATTTTAC-AATCGACGGTATTTCGGTAATTTTATAAATCAG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTA-CAATCAA
*
138928077 GGGTACTTT-GGTAATTTTACAACT-GAGGGTATTTCAGTAATTTT
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT
138928121 GTAAACTAAA
Statistics
Matches: 257, Mismatches: 42, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
53 109 0.42
54 141 0.55
55 7 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAA
Found at i:138927895 original size:27 final size:27
Alignment explanation
Indices: 138927808--138928120 Score: 309
Period size: 27 Copynumber: 11.7 Consensus size: 27
138927798 CTACCCTACA
* *
138927808 AGGGTATTTCGGTAATTTTATAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
138927835 AGGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
138927861 ACGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
138927888 AGGATATTTGGGTAATTTTATAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
138927915 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** *
138927942 AGGGTATTTTAGTAATTTTAGAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
138927969 CGGGTATTTCAGTAATTTTGCAAA-CTG
1 AGGGTATTTCGGTAATTTTACAAATC-G
* *
138927996 AGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
**
138928023 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
138928049 ACGGTATTTCGGTAATTTTATAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
*
138928075 AGGGGTACTTT-GGTAATTTTACAACT-G
1 A-GGGTA-TTTCGGTAATTTTACAAATCG
*
138928102 AGGGTATTTCAGTAATTTT
1 AGGGTATTTCGGTAATTTT
138928121 GTAAACTAAA
Statistics
Matches: 236, Mismatches: 38, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 64 0.27
27 161 0.68
28 8 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:138927931 original size:161 final size:161
Alignment explanation
Indices: 138927752--138928118 Score: 401
Period size: 161 Copynumber: 2.3 Consensus size: 161
138927742 TTCTACCCTA
* **
138927752 CAGGGGTA-TTTCGGTAATTCTAC-CCTACAAGGGTATTTTAGTAATTCTAC-CCTACAAGGGTA
1 CAGGGGTACTTT-GGTAATTCTACAACT-CAAGGGTATTTTAGTAATTCTACAAAT-CAAGGGTA
* * *
138927814 TTTCGGTAATTTTATAAA-TCAAGGGTATTTC-AGTAATTTTAC-AATCAACGGTATTTCGGTAA
63 TTTCAGTAATTTTACAAACT-AAGGGTATTTCGA-TAATTTTACAAATCAACGGTATTTCAGTAA
*
138927876 TTTTACAAATCGA-GGATATTTGGGTAATTTTATAAA-
126 TTTTAC-AATCGACGG-TATTTCGGTAATTTTATAAAT
* * * * * * **
138927912 CTGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAGAAATCGCGGGTATT
1 C-AGGGGTACTTTGGTAATTCTACAACTCAAGGGTATTTTAGTAATTCTACAAATCAAGGGTATT
* * * *
138927977 TCAGTAATTTTGCAAACTGAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTTAGTAATTTT
65 TCAGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAATCAACGGTATTTCAGTAATTTT
138928042 ACAATCGACGGTATTTCGGTAATTTTATAAAT
130 ACAATCGACGGTATTTCGGTAATTTTATAAAT
* * *
138928074 CAGGGGTACTTTGGTAATTTTACAACT-GAGGGTATTTCAGTAATT
1 CAGGGGTACTTTGGTAATTCTACAACTCAAGGGTATTTTAGTAATT
138928119 TTGTAAACTA
Statistics
Matches: 176, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
160 18 0.10
161 125 0.71
162 33 0.19
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (161 bp):
CAGGGGTACTTTGGTAATTCTACAACTCAAGGGTATTTTAGTAATTCTACAAATCAAGGGTATTT
CAGTAATTTTACAAACTAAGGGTATTTCGATAATTTTACAAATCAACGGTATTTCAGTAATTTTA
CAATCGACGGTATTTCGGTAATTTTATAAAT
Found at i:138927974 original size:54 final size:54
Alignment explanation
Indices: 138927809--138928125 Score: 303
Period size: 53 Copynumber: 5.9 Consensus size: 54
138927799 TACCCTACAA
* * * *
138927809 GGGTATTTCGGTAATTTTATAAATCAAGGGTATTTCAGTAATTTTA-CAATCAAC
1 GGGTATTTCGGTAATTTTA-CAATCGAGGGTATTTCAGTAATTTTATAAATCAGC
* ** * *
138927863 -GGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAA-CTGG
1 GGGTATTTCGGTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTATAAATCAGC
* *
138927916 GGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTAGAAATC-GC
1 GGGTA-TTTCGGTAATTTTACAA-TCGAGGGTATTTCAGTAATTTTATAAATCAGC
* * * * *
138927970 GGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTC-GATAATTTTACAAATCA-A
1 GGGTATTTCGGTAATTTTACAATC-GAGGGTATTTCAG-TAATTTTATAAATCAGC
** * *
138928024 GGGTATTTTAGTAATTTTACAATCGACGGTATTTCGGTAATTTTATAAATCAG-
1 GGGTATTTCGGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATAAATCAGC
*
138928077 GGGTACTTT-GGTAATTTTACAA-CTGAGGGTATTTCAGTAATTTTGTAAA
1 GGGTA-TTTCGGTAATTTTACAATC-GAGGGTATTTCAGTAATTTTATAAA
138928126 CTAAAGTATT
Statistics
Matches: 220, Mismatches: 29, Indels: 29
0.79 0.10 0.10
Matches are distributed among these distances:
52 1 0.00
53 110 0.50
54 105 0.48
55 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATAAATCAGC
Found at i:138940170 original size:40 final size:40
Alignment explanation
Indices: 138940125--138940291 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
138940115 CGGAATATAA
138940125 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
138940165 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTA-C
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
138940204 CCGGATATAGCCACTAGCTCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
138940244 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
138940284 CCGGATAT
1 CCGGATAT
138940292 CATTCAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.31
40 72 0.69
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:138942391 original size:44 final size:43
Alignment explanation
Indices: 138942248--138942404 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
138942238 AGCTCATACA
* *
138942248 ATGCCAACGTCCCAGACGTGGTCTTAGATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATAT-G
* * *
138942291 ATGTC-ACTGTCCCAGACAAGGTCTTACACG-AAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAATCAAATATG
* *
138942333 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-TATG
138942377 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
138942405 CGATAATACA
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 26 0.27
43 39 0.41
44 30 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATATG
Found at i:138946168 original size:19 final size:20
Alignment explanation
Indices: 138946144--138946181 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
138946134 GGTACCACCA
138946144 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
138946163 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
138946182 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:138946500 original size:47 final size:49
Alignment explanation
Indices: 138946446--138946571 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 49
138946436 GGGCGTTCAT
*
138946446 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCATAAG
*
138946493 CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAAG
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCATAAG
*
138946539 TGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CGAACTCGGACTCAACTCAACGAGTTCGGATGC
138946572 TCAACCATCC
Statistics
Matches: 69, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.42
47 30 0.43
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCATAAG
Done.