Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 460 of 770
Found at i:141870066 original size:40 final size:40
Alignment explanation
Indices: 141869982--141870066 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
141869972 GGCATTCGTG
* * **
141869982 CGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATCTGTG
1 CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATCTGAA
* *
141870022 CGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAA
1 CGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATCTGAA
141870062 CGAGT
1 CGAGT
141870067 AGCTATATCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATCTGAA
Found at i:141882707 original size:13 final size:13
Alignment explanation
Indices: 141882689--141882714 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
141882679 TTAAAAAGGA
141882689 TCATTTTCATTTC
1 TCATTTTCATTTC
141882702 TCATTTTCATTTC
1 TCATTTTCATTTC
141882715 ATTTCATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (13 bp):
TCATTTTCATTTC
Found at i:141882796 original size:64 final size:64
Alignment explanation
Indices: 141882724--141882851 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 64
141882714 CATTTCATAA
* *
141882724 CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCTTAATCATTT-GACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAG-CATAAGCAT
* *
141882788 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTAGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAGCATAAGCAT
141882852 AGATACATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 58 0.98
65 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATCTCAATCATAGCATCCTAATCATTTAGCATAAGCAT
Found at i:141884912 original size:29 final size:29
Alignment explanation
Indices: 141884761--141884901 Score: 246
Period size: 29 Copynumber: 4.9 Consensus size: 29
141884751 GTGACGAGAT
141884761 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
141884790 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
141884819 TGGCACTAAGTGTGCGTGCTGGAAATTTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
141884848 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
141884877 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
141884902 AATACGACAC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 107 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:141884919 original size:87 final size:87
Alignment explanation
Indices: 141884761--141884921 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 87
141884751 GTGACGAGAT
** * * *
141884761 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
141884826 AAGTGTGCGTGCTGGAAATTTA
66 AAGTGTGCGTGCTGGAAATTTA
*
141884848 TGGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
**
141884913 GGGTGTGCG
66 AAGTGTGCG
141884922 AGTTCGGAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
AAGTGTGCGTGCTGGAAATTTA
Found at i:141884937 original size:87 final size:87
Alignment explanation
Indices: 141884761--141884978 Score: 235
Period size: 87 Copynumber: 2.5 Consensus size: 87
141884751 GTGACGAGAT
** * * *
141884761 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
* **
141884826 AAGTGTGCGTGCTGGAAATTTA
66 AAGTGTGCGAGCTGGAAAGGTA
*
141884848 TGGCACTAAGTGTGCGTGCTGGAAATATTTGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
** * *
141884913 GGGTGTGCGAGTTCGG-AGGGTA
66 AAGTGTGCGAGCT-GGAAAGGTA
** * *
141884935 TGGCACTGTGTGTGCGAGCT-TAAAT-TACGTGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCGTGCTGGAAATATA--TGGCACTAAGTGTGC
141884979 GAAATCGAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
85 1 0.01
86 4 0.04
87 103 0.94
88 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (87 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCAAGCTGGAAAAATACGACACT
AAGTGTGCGAGCTGGAAAGGTA
Found at i:141886613 original size:131 final size:131
Alignment explanation
Indices: 141886376--141886897 Score: 773
Period size: 131 Copynumber: 4.0 Consensus size: 131
141886366 GGGTGTTACA
* *
141886376 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGTAGATTGAAGCCACCATCCTATCTCCCTAAGTAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * *
141886441 TAGTGGAGTAGGCTAAAGATTGCAAATCTTGTCTCCCTGAAGTTGTAGTGGAACAGATCGAAGAC
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
141886506 G
131 G
* * *
141886507 GTGAATCTTGCTTCCTTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * *
141886572 TAGTGGAGTAGGCTAAAGATTCCAGATCTTGTCTCCTTGAAGTTGTAGTGCAACAGATCAAAGAC
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
141886637 G
131 G
* *
141886638 GCGAATCTTTCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCAGCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * * *
141886703 TAGTGGAGTAGACTAAAGATTACAGATCTTGTCTCCTTGAAGTTGCAGTGGAACAGATCGAACAT
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
141886768 G
131 G
* * * *
141886769 ACGAATCTTGCCTCCTTAACCAGTAGTGGAGTAGATTAAAGCCACCATCCTATCTCCCTAAGCAG
1 GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
* * * * *
141886834 TAGTGGAGTAGGC-CAA-ATTACAGATCTTATCT-CTCT-AAATAGTAGTGGAGCAGATCGAAGA
66 TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCT-TGAAGTTGTAGTGGAACAGATCGAAGA
141886895 CG
130 CG
141886897 G
1 G
141886898 TAAGCCTTAA
Statistics
Matches: 352, Mismatches: 38, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
128 23 0.07
129 16 0.05
130 2 0.01
131 311 0.88
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (131 bp):
GCGAATCTTGCCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAG
TAGTGGAGTAGGCTAAAGATTACAGATCTTGTCTCCTTGAAGTTGTAGTGGAACAGATCGAAGAC
G
Found at i:141886704 original size:42 final size:42
Alignment explanation
Indices: 141886387--141886710 Score: 134
Period size: 42 Copynumber: 7.5 Consensus size: 42
141886377 CGAATCTTGC
* * *
141886387 CTCCCTAACCAGTAGTGGAGTAGATTGAAGCCACCATCCTAT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
* * ** * *** * *
141886429 CTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTGCAAATCTTGT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGC--ATCCTAT
** * * ** *
141886473 CTCCCTGAAGTTGTAGTGGAACAGATCGAAGACGGTGAAT-CT-T
1 CTCCCT-AAGCAGTAGTGGAGCAGATTGAAG-C-CAGCATCCTAT
* * *
141886516 GCTTCCTTAACCAGTAGTGGAGCAGATTGAAGCCACCATCCTAT
1 -C-TCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
* ** * * *
141886560 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTCCAG-ATCTTGT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAG---CCAGCATCCTAT
* ** * * ** * * *
141886604 CTCCTTGAAGTTGTAGTGCAACAGATCAAAGACGGCGAAT-CTTT
1 CTCCCT-AAGCAGTAGTGGAGCAGATTGAAGCCAGC--ATCCTAT
*
141886648 CCTCCCTAACCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
1 -CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
141886691 CTCCCTAAGCAGTAGTGGAG
1 CTCCCTAAGCAGTAGTGGAG
141886711 TAGACTAAAG
Statistics
Matches: 198, Mismatches: 66, Indels: 36
0.66 0.22 0.12
Matches are distributed among these distances:
42 74 0.37
43 8 0.04
44 65 0.33
45 49 0.25
47 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (42 bp):
CTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGCATCCTAT
Found at i:141886948 original size:88 final size:87
Alignment explanation
Indices: 141886848--141887156 Score: 428
Period size: 88 Copynumber: 3.5 Consensus size: 87
141886838 GGAGTAGGCC
** * *
141886848 AAATTACAGATCTTATCTCTCTAAATAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTAACCCCT
1 AAATTACAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAACCCC-
141886913 TAAGCAGTAGGGTAACAGGCTGA
65 TAAGCAGTAGGGTAACAGGCTGA
*
141886936 AAATTACAGATCTTATCTC-CTAAGCAGTAGTGGA-CAAGATCGAAGACGATGAGCCTTACCCCC
1 AAATTACAGATCTTATCTCTCTAAGCAGTAGTGGAGC-AGATCGAAGACGATGAGCCTTAACCCC
* *
141886999 TAAGCAGTAGGGTAATAGACTGA
65 TAAGCAGTAGGGTAACAGGCTGA
* * *
141887022 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGATGAGCTTTAACTCCC
1 AAATTACAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAAC-CCC
*
141887087 TAAGTAGTAGGGTAACAGGCT-A
65 TAAGCAGTAGGGTAACAGGCTGA
* *
141887109 GAAATTATAGATCTTATCT-TCCTAAGCAGTAGTGGAGCAGATCAAAGA
1 -AAATTACAGATCTTATCTCT-CTAAGCAGTAGTGGAGCAGATCGAAGA
141887157 TAACAAATCT
Statistics
Matches: 199, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
86 41 0.21
87 75 0.38
88 83 0.42
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (87 bp):
AAATTACAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCCTTAACCCCT
AAGCAGTAGGGTAACAGGCTGA
Found at i:141886981 original size:87 final size:86
Alignment explanation
Indices: 141886848--141887144 Score: 411
Period size: 87 Copynumber: 3.4 Consensus size: 86
141886838 GGAGTAGGCC
** * *
141886848 AAATTACAGATCTTATCTCTCTAAATAGTAGTGGAGC-AGATCGAAGACGGTAAGCCTTAACCCC
1 AAATTACAGATCTTATCTC-CTAAGCAGTAGTGGA-CAAGATCGAAGACGATGAGCCTTAACCCC
141886912 TTAAGCAGTAGGGTAACAGGCTGA
64 -TAAGCAGTAGGGTAACAGGCTGA
*
141886936 AAATTACAGATCTTATCTCCTAAGCAGTAGTGGACAAGATCGAAGACGATGAGCCTTACCCCCTA
1 AAATTACAGATCTTATCTCCTAAGCAGTAGTGGACAAGATCGAAGACGATGAGCCTTAACCCCTA
* *
141887001 AGCAGTAGGGTAATAGACTGA
66 AGCAGTAGGGTAACAGGCTGA
*
141887022 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGA-ACAGATCGAAGACGATGAGCTTTAACTCC
1 AAATTACAGATCTTATCT-CCTAAGCAGTAGTGGACA-AGATCGAAGACGATGAGCCTTAAC-CC
*
141887086 CTAAGTAGTAGGGTAACAGGCT-A
63 CTAAGCAGTAGGGTAACAGGCTGA
*
141887109 GAAATTATAGATCTTATCTTCCTAAGCAGTAGTGGA
1 -AAATTACAGATCTTATC-TCCTAAGCAGTAGTGGA
141887145 GCAGATCAAA
Statistics
Matches: 190, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
86 41 0.22
87 76 0.40
88 72 0.38
89 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (86 bp):
AAATTACAGATCTTATCTCCTAAGCAGTAGTGGACAAGATCGAAGACGATGAGCCTTAACCCCTA
AGCAGTAGGGTAACAGGCTGA
Found at i:141887086 original size:44 final size:44
Alignment explanation
Indices: 141886954--141887104 Score: 125
Period size: 44 Copynumber: 3.5 Consensus size: 44
141886944 GATCTTATCT
* *
141886954 CCTAAGCAGTAGTGG--ACAAGATCGAAGACGATGAGCCTT-ACCC
1 CCTAAGCAGTAG-GGTAAC-AGATCGAAGACGATGAGCTTTAACTC
* * ** * * *
141886997 CCTAAGCAGTAGGGTAATAGA-CTGAAAATTA-CAGATCTTATCTC
1 CCTAAGCAGTAGGGTAACAGATC-GAAGACGATGAGCT-TTAACTC
141887041 CCTAAGCAGTAGTGG-AACAGATCGAAGACGATGAGCTTTAACTC
1 CCTAAGCAGTAG-GGTAACAGATCGAAGACGATGAGCTTTAACTC
*
141887085 CCTAAGTAGTAGGGTAACAG
1 CCTAAGCAGTAGGGTAACAG
141887105 GCTAGAAATT
Statistics
Matches: 82, Mismatches: 17, Indels: 17
0.71 0.15 0.15
Matches are distributed among these distances:
42 5 0.06
43 24 0.29
44 47 0.57
45 6 0.07
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (44 bp):
CCTAAGCAGTAGGGTAACAGATCGAAGACGATGAGCTTTAACTC
Found at i:141887720 original size:44 final size:45
Alignment explanation
Indices: 141887613--141887723 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
141887603 AAGCCATAAA
* * * *
141887613 CCTTATCCCCCTGAAGTTACAGTGGGGAAGGTTGAAGTTACGAGT
1 CCTTATCCCCCTGAAGTTGCAGCGGGGAAGGCTGAAGTTACAAGT
141887658 CCTTA-CCCCTCTGAAGTTGCAGCGGGGCAA-GCTGAAGTTACAAGT
1 CCTTATCCCC-CTGAAGTTGCAGCGGGG-AAGGCTGAAGTTACAAGT
*
141887703 -CTTATCTCCCTGAAGTTGCAG
1 CCTTATCCCCCTGAAGTTGCAG
141887724 TGGAGCAGAC
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
44 20 0.34
45 36 0.62
46 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (45 bp):
CCTTATCCCCCTGAAGTTGCAGCGGGGAAGGCTGAAGTTACAAGT
Found at i:141888355 original size:15 final size:16
Alignment explanation
Indices: 141888335--141888364 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
141888325 AAAGGACAGC
141888335 ACAACAA-AAAGAAAA
1 ACAACAACAAAGAAAA
141888350 ACAACAACAAAGAAA
1 ACAACAACAAAGAAA
141888365 TTCTTTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.17, G:0.07, T:0.00
Consensus pattern (16 bp):
ACAACAACAAAGAAAA
Found at i:141908406 original size:18 final size:17
Alignment explanation
Indices: 141908383--141908416 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
141908373 TAACTTTTTT
*
141908383 ATCAATCGCATTATTCAA
1 ATCAATC-CATAATTCAA
141908401 ATCAATCCATAATTCA
1 ATCAATCCATAATTCA
141908417 TGCTTTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (17 bp):
ATCAATCCATAATTCAA
Found at i:141912622 original size:30 final size:30
Alignment explanation
Indices: 141912588--141912649 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
141912578 AACTCCCAAA
* *
141912588 CCTTCCCACTTTTCCCTCAAAACTTTTACT
1 CCTTCCCACTTTCCCCCCAAAACTTTTACT
*
141912618 CCTTCTCACTTTCCCCCCAAAACTTTTACT
1 CCTTCCCACTTTCCCCCCAAAACTTTTACT
141912648 CC
1 CC
141912650 CCTTCCATCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37
Consensus pattern (30 bp):
CCTTCCCACTTTCCCCCCAAAACTTTTACT
Found at i:141912925 original size:18 final size:18
Alignment explanation
Indices: 141912902--141912960 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
141912892 CTCTACCCTA
141912902 TTTACTTTCCCTC-AAACT
1 TTTACTTTCCC-CAAAACT
*
141912920 TTTAC--TCCCCAAAATT
1 TTTACTTTCCCCAAAACT
* *
141912936 TTTATTTTCCCCTAAACT
1 TTTACTTTCCCCAAAACT
141912954 TTTACTT
1 TTTACTT
141912961 CTCACCCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 1 0.03
16 12 0.36
18 20 0.61
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTACTTTCCCCAAAACT
Found at i:141914112 original size:33 final size:33
Alignment explanation
Indices: 141914071--141914138 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
141914061 AATCAAACTC
141914071 AATAATATTCAAAAAGATGTAGGATCACTCTCT
1 AATAATATTCAAAAAGATGTAGGATCACTCTCT
141914104 AATAATATTCAAAAAGATGTAGGATCACTCTCT
1 AATAATATTCAAAAAGATGTAGGATCACTCTCT
141914137 AA
1 AA
141914139 CAAAGTAGAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (33 bp):
AATAATATTCAAAAAGATGTAGGATCACTCTCT
Found at i:141914872 original size:23 final size:23
Alignment explanation
Indices: 141914836--141914879 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
141914826 AAATAAATTT
* *
141914836 AGAAAATAACAAAAGAAATAAGA
1 AGAAAAAAACAAAAAAAATAAGA
*
141914859 AGAAAAAAATAAAAAAAATAA
1 AGAAAAAAACAAAAAAAATAA
141914880 AGGATACCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.09
Consensus pattern (23 bp):
AGAAAAAAACAAAAAAAATAAGA
Found at i:141919203 original size:12 final size:12
Alignment explanation
Indices: 141919188--141919224 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
141919178 ATTATTTTTA
141919188 TTATTATACATT
1 TTATTATACATT
*
141919200 TTATTTATAAATT
1 TTA-TTATACATT
141919213 TTATTATACATT
1 TTATTATACATT
141919225 ATATGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:141919440 original size:10 final size:10
Alignment explanation
Indices: 141919330--141919444 Score: 57
Period size: 10 Copynumber: 11.7 Consensus size: 10
141919320 TTAATTTTTT
*
141919330 TATTATTAAA
1 TATTATTATA
* *
141919340 TAATAGTATA
1 TATTATTATA
*
141919350 TA-TATTATC
1 TATTATTATA
141919359 T-TTATT-TA
1 TATTATTATA
141919367 TATGATAGTTATCA
1 TAT--TA-TTAT-A
141919381 TATTATTATA
1 TATTATTATA
141919391 T-TTCATTATA
1 TATT-ATTATA
*
141919401 TTTTATT-TA
1 TATTATTATA
141919410 T-TT-TTAT-
1 TATTATTATA
* *
141919417 TACATATCATA
1 TA-TTATTATA
141919428 TATTATTATA
1 TATTATTATA
141919438 TATTATT
1 TATTATT
141919445 CCCTATATTA
Statistics
Matches: 81, Mismatches: 10, Indels: 28
0.68 0.08 0.24
Matches are distributed among these distances:
7 3 0.04
8 5 0.06
9 17 0.21
10 37 0.46
11 10 0.12
12 4 0.05
13 1 0.01
14 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (10 bp):
TATTATTATA
Found at i:141919476 original size:7 final size:7
Alignment explanation
Indices: 141919462--141919497 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
141919452 TTATCTTCCT
141919462 TTTATTA
1 TTTATTA
*
141919469 TATATTA
1 TTTATTA
141919476 TTTCATTA
1 TTT-ATTA
141919484 TTTATTA
1 TTTATTA
141919491 TTTATTA
1 TTTATTA
141919498 GTATAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:141919489 original size:15 final size:14
Alignment explanation
Indices: 141919462--141919502 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
141919452 TTATCTTCCT
141919462 TTTATTATATATTA
1 TTTATTATATATTA
*
141919476 TTTCATTATTTATTA
1 TTT-ATTATATATTA
141919491 TTTATTAGTATA
1 TTTATTA-TATA
141919503 AAAAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTATTATATATTA
Found at i:141921621 original size:19 final size:19
Alignment explanation
Indices: 141921597--141921675 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
141921587 AATCTTTAAG
141921597 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
141921616 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
141921635 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
141921652 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
141921673 GAT
1 GAT
141921676 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
21 9 0.17
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:141922071 original size:25 final size:24
Alignment explanation
Indices: 141922039--141922085 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
141922029 TTATTTTCAA
*
141922039 ATATATATTTTCTATGCATGTATAT
1 ATATATATTATC-ATGCATGTATAT
*
141922064 ATATATATTATCATTCATGTAT
1 ATATATATTATCATGCATGTAT
141922086 TTTGAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (24 bp):
ATATATATTATCATGCATGTATAT
Found at i:141923268 original size:35 final size:35
Alignment explanation
Indices: 141923222--141923298 Score: 145
Period size: 35 Copynumber: 2.2 Consensus size: 35
141923212 GTTTGTATTA
*
141923222 TTGCATGTGTTGCTATATTCTGATACGCATTGCAT
1 TTGCATGTGTTGCTATATTCTGATACGCATTACAT
141923257 TTGCATGTGTTGCTATATTCTGATACGCATTACAT
1 TTGCATGTGTTGCTATATTCTGATACGCATTACAT
141923292 TTGCATG
1 TTGCATG
141923299 ACCGTTGTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (35 bp):
TTGCATGTGTTGCTATATTCTGATACGCATTACAT
Found at i:141924469 original size:23 final size:21
Alignment explanation
Indices: 141924429--141924471 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
141924419 CAGGTTTGTT
*
141924429 GGTTGTTCTCAGTTACTTTTA
1 GGTTGTTCTCAGTCACTTTTA
141924450 GGTTGGTTCTACAGTCACTTTT
1 GGTT-GTTCT-CAGTCACTTTT
141924472 GATTGATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 5 0.26
23 10 0.53
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (21 bp):
GGTTGTTCTCAGTCACTTTTA
Found at i:141928428 original size:21 final size:20
Alignment explanation
Indices: 141928403--141928452 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
141928393 CTTCTAGTTC
*
141928403 AAAAAAAAGGAAAAAAGAAA
1 AAAAAAAAGAAAAAAAGAAA
* *
141928423 ATAAAAAGAGAAAAAAATAAA
1 A-AAAAAAAGAAAAAAAGAAA
141928444 AAGAAAAAA
1 AA-AAAAAA
141928453 TGAGAGGCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (20 bp):
AAAAAAAAGAAAAAAAGAAA
Found at i:141928437 original size:14 final size:14
Alignment explanation
Indices: 141928414--141928452 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
141928404 AAAAAAAGGA
*
141928414 AAAAAGAAAATAA-
1 AAAAAGAAAAAAAT
*
141928427 AAAGAGAAAAAAAT
1 AAAAAGAAAAAAAT
141928441 AAAAAGAAAAAA
1 AAAAAGAAAAAA
141928453 TGAGAGGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (14 bp):
AAAAAGAAAAAAAT
Found at i:141928439 original size:16 final size:15
Alignment explanation
Indices: 141928415--141928452 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
141928405 AAAAAAGGAA
141928415 AAAAGAAAATAAAAAG
1 AAAA-AAAATAAAAAG
141928431 AGAAAAAAATAAAAAG
1 A-AAAAAAATAAAAAG
141928447 AAAAAA
1 AAAAAA
141928453 TGAGAGGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 13 0.62
17 3 0.14
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (15 bp):
AAAAAAAATAAAAAG
Found at i:141929505 original size:44 final size:44
Alignment explanation
Indices: 141929362--141929544 Score: 149
Period size: 44 Copynumber: 4.1 Consensus size: 44
141929352 CAAAGAAACA
* * *
141929362 AGATTTGGCATCCCTGTGTTTATAGAGAAACAGATCAAAGATAGC
1 AGATTTGGCATCCCTGTGTTTACAGAG-AACAAATCGAAGATAGC
* * * * * **
141929407 AGATCTGTCA-CTCCTGTGCTTACAGCAAAACAAATTGAAGATTTC
1 AGATTTGGCATC-CCTGTGTTTACAG-AGAACAAATCGAAGATAGC
* * * *
141929452 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTACAGAGAACAAATCGAAGATAGC
141929495 AGATTTGGCATCCCTGTGTTTACA-AGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTACAGA-GAACAAATCGAAG--ATAGC
141929541 AGAT
1 AGAT
141929545 CTGATTTTTG
Statistics
Matches: 107, Mismatches: 22, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.01
43 16 0.15
44 45 0.42
45 34 0.32
46 11 0.10
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTACAGAGAACAAATCGAAGATAGC
Found at i:141929599 original size:93 final size:93
Alignment explanation
Indices: 141929494--141929942 Score: 252
Period size: 87 Copynumber: 5.1 Consensus size: 93
141929484 TTGAAGATAG
* *
141929494 CAGATTTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGATTTTTGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
*
141929559 TTCTCATACCAAAGCAGATCTAAAATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
* * * * * * * **
141929587 CAGATCTGGCAT--CTCTATTT-CGACGGAGAGC--AT-G--TACATAGCAGGTCTAACCTTCAG
1 CAGATCTGGCATCCCTGTGTTTAC-AAGGA-A-CAAATCGAAGACATAGCAGATCTGACTTTTGG
**
141929644 ATGTT-T-ATACTGAAGCAGATCCAAAAT--
63 ATGTTCTCATACCAAAGCAGATCCAAAATAA
* * * *
141929671 --GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
* *
141929734 TTCTCACACCAAAGCAGATCCAAGATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
* * * * * * * * * ***
141929762 CAAATCTGGCATCTCC---ATTT-CGACGG---AGAGC-AGGTACATAGCAGGTCTAACCTTCAA
1 CAGATCTGGCATC-CCTGTGTTTAC-AAGGAACAAATCGAAG-ACATAGCAGATCTGACTTTTGG
** *
141929819 ATGTT-T-ATACTGAAGCAGATCCAAGAT--
63 ATGTTCTCATACCAAAGCAGATCCAAAATAA
* * * * *
141929846 --GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATG
1 CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
* * *
141929909 TTCTTACACCAAAGCAGATCCAAGATAA
66 TTCTCATACCAAAGCAGATCCAAAATAA
*
141929937 TAGATC
1 CAGATC
141929943 CGACATTTCC
Statistics
Matches: 254, Mismatches: 68, Indels: 68
0.65 0.17 0.17
Matches are distributed among these distances:
81 1 0.00
82 18 0.07
83 1 0.00
84 17 0.07
85 3 0.01
86 36 0.14
87 49 0.19
88 48 0.19
89 35 0.14
90 3 0.01
91 18 0.07
92 1 0.00
93 23 0.09
94 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (93 bp):
CAGATCTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGACTTTTGGATG
TTCTCATACCAAAGCAGATCCAAAATAA
Found at i:141929734 original size:87 final size:87
Alignment explanation
Indices: 141929643--141930117 Score: 239
Period size: 87 Copynumber: 5.4 Consensus size: 87
141929633 CTAACCTTCA
141929643 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
*
141929708 GACATAGCAGATTTGACTTTTG
66 GACATAGCAGATTTGACTTTCG
* ** ** * *** *
141929730 GATGTTCTCACACCAAAGCAGATCCAAGATAACAAATCTGGCA-TC-TCCATTT-CGACGG---A
1 GATGTT-T-ATACTGAAGCAGATCC-A-A-AA-TGATTTGGCATTCTTGTGTTTAC-AAGGAACA
* * * * * * * *
141929789 GAGC-AGGTACATAGCAGGTCTAACCTTCA
59 AATCGAAG-ACATAGCAGATTTGACTTTCG
* *
141929818 AATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
141929883 GACATAGCAGATTTGACTTTCG
66 GACATAGCAGATTTGACTTTCG
* ** ** * * *
141929905 GATGTTCTTACACCAAAGCAGATCCAAGATAATAGATCCGACATTTCCAT-T-TCTAC--GGAGA
1 GATG-T-TTATACTGAAGCAGATCC-A-A-AAT-GATTTGGCA-TT-CTTGTGTTTACAAGGA-A
* * * * *
141929966 GC--A--G-ATACATAGCAGATCTAACCTTCA
57 -CAAATCGAAGACATAGCAGATTTGACTTTCG
* * * *
141929993 GATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGACCAAATCGA
1 GATG-TTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGA
* *
141930057 AGACATAGCAGATTTGGCTTTCAC
65 AGACATAGCAGATTTGACTTTC-G
** * * *
141930081 G-TGTTTACGCTGAAGTAGATCTAAGATGATTTGGCAT
1 GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCAT
141930118 ATCTGTATTG
Statistics
Matches: 275, Mismatches: 77, Indels: 72
0.65 0.18 0.17
Matches are distributed among these distances:
80 2 0.01
81 2 0.01
82 17 0.06
83 5 0.02
84 13 0.05
85 3 0.01
86 29 0.11
87 78 0.28
88 51 0.19
89 29 0.11
90 3 0.01
91 13 0.05
92 7 0.03
93 18 0.07
94 3 0.01
95 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
GATGTTTATACTGAAGCAGATCCAAAATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAA
GACATAGCAGATTTGACTTTCG
Found at i:141929787 original size:175 final size:174
Alignment explanation
Indices: 141929496--141930077 Score: 914
Period size: 175 Copynumber: 3.3 Consensus size: 174
141929486 GAAGATAGCA
* * *
141929496 GATTTGGCATCCCTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATCTGATTTTTGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* * * *
141929561 CTCATACCAAAGCAGATCTAAAATAACAGATCTGGCATCTCTATTTCGACGGAGAGCATGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCA-GTACAT
*
141929626 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAAAT
130 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
*
141929671 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
*
141929736 CTCACACCAAAGCAGATCCAAGATAACAAATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCA-GTACAT
*
141929801 AGCAGGTCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGAT
130 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
* *
141929846 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
* * * * * *
141929911 CTTACACCAAAGCAGATCCAAGATAATAGATCCGACATTTCCATTTCTACGGAGAGCAGATACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAG-TACAT
*
141929976 AGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGAT
130 AGCAGGTCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT
* * *
141930021 GATTTGGCATCCTTGTGTTCACAAGGACCAAATCGAAGACATAGCAGATTTGGCTTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTT
141930078 CACGTGTTTA
Statistics
Matches: 379, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
174 1 0.00
175 375 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (174 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGTACATA
GCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
Found at i:141930568 original size:19 final size:19
Alignment explanation
Indices: 141930544--141930611 Score: 104
Period size: 19 Copynumber: 3.7 Consensus size: 19
141930534 AATCTTTAAG
141930544 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
141930563 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
141930582 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
141930599 GATATGTAATCTT
1 GATATGCAATCTT
141930612 GAAAATATGA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 16 0.36
19 28 0.64
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:141944142 original size:40 final size:40
Alignment explanation
Indices: 141944034--141944243 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
141944024 CGGGATTTAA
* * * * *
141944034 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
141944074 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
141944114 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
141944154 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
141944194 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
141944234 CCGGATATAT
1 CCGGATATAT
141944244 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:141947229 original size:27 final size:27
Alignment explanation
Indices: 141947179--141947281 Score: 172
Period size: 27 Copynumber: 3.9 Consensus size: 27
141947169 AAGACCCTGA
* * *
141947179 TTTGTAGAATTACTAAAATACCCCTA-
1 TTTGTAAAATTACCAAAATACCCCCAG
141947205 TTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCAG
141947232 TTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCAG
141947259 TTTGTAAAATTACCAAAATACCC
1 TTTGTAAAATTACCAAAATACCC
141947282 TTGTAGTGTA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
26 23 0.32
27 50 0.68
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCCCAG
Found at i:141947280 original size:54 final size:53
Alignment explanation
Indices: 141947179--141947281 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
141947169 AAGACCCTGA
* * *
141947179 TTTGTAGAATTACTAAAATACCCCTATTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATACCCCCATTTGTAAAATTACCAAAATACCCCCAG
141947232 TTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC
1 TTTGTAAAATTACCAAAATACCCCCA-TTTGTAAAATTACCAAAATACCC
141947282 TTGTAGTGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 23 0.50
54 23 0.50
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCCCCATTTGTAAAATTACCAAAATACCCCCAG
Found at i:141947291 original size:27 final size:26
Alignment explanation
Indices: 141947179--141947309 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 26
141947169 AAGACCCTGA
* *
141947179 TTTGTAGAATTACTAAAATACCCCTA-
1 TTTGTAAAATTACCAAAATACCCC-AG
141947205 TTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATA-CCCCAG
141947232 TTTGTAAAATTACCAAAATACCCCCAG
1 TTTGTAAAATTACCAAAATA-CCCCAG
**
141947259 TTTGTAAAATTACCAAAATACCCTTG
1 TTTGTAAAATTACCAAAATACCCCAG
* * *
141947285 TAGTGTAAAATTATCGAAATACCCC
1 T-TTGTAAAATTACCAAAATACCCC
141947310 TTAGGGTAAA
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 24 0.26
27 70 0.74
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (26 bp):
TTTGTAAAATTACCAAAATACCCCAG
Found at i:141958555 original size:40 final size:40
Alignment explanation
Indices: 141958492--141958625 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 40
141958482 CGGTTATTTG
* * *
141958492 TGGCACTTAGTGTGCGATACGACATAACTTTGGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAACTTCGGCTATATA
141958532 TGGCACTTAGTGTGTGATTCGACATAACTTCGGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAACTTCGGCTATATA
* * * *
141958572 TGGCACTTAGTGTGTGATTTGAGA-AAGCTTCTGCTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAA-CTTCGGCTATATA
* *
141958612 CGACACTTAGTGTG
1 TGGCACTTAGTGTG
141958626 CGAGATATCT
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
39 2 0.02
40 82 0.98
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAACTTCGGCTATATA
Found at i:141963189 original size:40 final size:40
Alignment explanation
Indices: 141963144--141963273 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
141963134 CGGAATACAA
141963144 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
141963184 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * * *
141963224 CCGGATGTAGCCGCTAGCAC-AATTACCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
141963264 CCGGATATAA
1 CCGGATATAA
141963274 TTTCCAGCAA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:141971896 original size:42 final size:41
Alignment explanation
Indices: 141971850--141971971 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 41
141971840 CTTACATGGG
* *
141971850 ATCTCACATTGATGCCATATCCCAGATATGGTCTTATACAAA
1 ATCTCA-ATTGATGCCATATCCTAGATATGGTCTTACACAAA
* * * ** *
141971892 ATCTCATTTCGATGTCATGTCCTAGACGTGGTCTTACACGAA
1 ATCTCAATT-GATGCCATATCCTAGATATGGTCTTACACAAA
** *
141971934 ATCTCATATCAACGCCATATCCTAGATATGGTCTTACA
1 ATCTCA-ATTGATGCCATATCCTAGATATGGTCTTACA
141971972 TGATAACCCA
Statistics
Matches: 62, Mismatches: 16, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
ATCTCAATTGATGCCATATCCTAGATATGGTCTTACACAAA
Found at i:141972049 original size:48 final size:48
Alignment explanation
Indices: 141971947--141972060 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 48
141971937 TCATATCAAC
* * * ***
141971947 GCCATATCCTAGATATGGTCTTACATGATAACCCATACCGATGTTGAT
1 GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
**
141971995 ATCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
1 GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
141972043 GCCATATCCCAGA-ATGGT
1 GCCATATCCCAGATATGGT
141972061 TTTATACACA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 5 0.09
48 51 0.91
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACATGATAACACATACCAATGCCAAT
Found at i:141974784 original size:40 final size:40
Alignment explanation
Indices: 141974729--141974965 Score: 347
Period size: 40 Copynumber: 6.0 Consensus size: 40
141974719 TAGCCCGTTA
* **
141974729 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
*
141974769 TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
141974809 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
141974849 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA-T
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
141974888 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
141974928 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
141974966 CATCATTCGA
Statistics
Matches: 184, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
39 42 0.23
40 131 0.71
41 11 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:141981241 original size:40 final size:40
Alignment explanation
Indices: 141981186--141981395 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
141981176 AACATTGGAA
141981186 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
141981226 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
141981266 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
141981306 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
141981345 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
141981386 CTATATCCGG
1 ATATATCCGG
141981396 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:141989358 original size:39 final size:39
Alignment explanation
Indices: 141989298--141989503 Score: 272
Period size: 39 Copynumber: 5.3 Consensus size: 39
141989288 GAACATTGAA
141989298 ATATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
141989337 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTG
141989376 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
* * * *
141989416 ATATATCCGGGCTAAGACCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTG
* * * * * *
141989454 ACCAAATCCGGGTTATGACCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTG
*
141989494 CTATATCCGG
1 ATATATCCGG
141989504 TTAAATCCCG
Statistics
Matches: 146, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 97 0.66
40 47 0.32
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (39 bp):
ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTG
Found at i:141989428 original size:79 final size:78
Alignment explanation
Indices: 141989298--141989503 Score: 281
Period size: 79 Copynumber: 2.6 Consensus size: 78
141989288 GAACATTGAA
141989298 ATATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
* *
141989362 ATTCGTGCGAGTTG
66 ATTCGTGCAAG-TC
141989376 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
* *
141989441 CTTTGTGCAAGTC
66 ATTCGTGCAAGTC
* * * * * * *
141989454 ACCAAATCCGGGTTATGA-CCGAAGGCAATCGTGCGAGTCGCTATATCCGG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
141989504 TTAAATCCCG
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
78 39 0.34
79 76 0.66
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (78 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCGAAGGC
ATTCGTGCAAGTC
Found at i:141993785 original size:31 final size:31
Alignment explanation
Indices: 141993744--141993807 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
141993734 CCTTTTCATA
*
141993744 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
141993775 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
141993806 TT
1 TT
141993808 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:141994063 original size:23 final size:23
Alignment explanation
Indices: 141993999--141994138 Score: 196
Period size: 23 Copynumber: 6.0 Consensus size: 23
141993989 TGCTTTATCA
*
141993999 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
141994023 TAATAACTGGGG-AAAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
141994046 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
141994069 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
141994092 TGATAACTGGGGCATAAGCCC-TT
1 T-ATAACTGGGGCATAAGCCCTTT
141994115 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
141994138 T
1 T
141994139 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
22 29 0.27
23 43 0.41
24 26 0.25
25 8 0.08
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:141994222 original size:19 final size:20
Alignment explanation
Indices: 141994191--141994243 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
141994181 GAACATCTCG
141994191 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
141994211 TGTGCA-ATCATACATGTCA
1 TGTGCATATCATACATATCA
141994230 TGT--ATATCATACAT
1 TGTGCATATCATACAT
141994244 CATGCATATC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 1 0.03
18 9 0.29
19 15 0.48
20 6 0.19
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:141994269 original size:16 final size:16
Alignment explanation
Indices: 141994222--141994270 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
141994212 GTGCAATCAT
*
141994222 ACATGTCATGTATATC
1 ACATATCATGTATATC
* * *
141994238 ATACATCATGCATATC
1 ACATATCATGTATATC
*
141994254 ACATATCATGTTTATC
1 ACATATCATGTATATC
141994270 A
1 A
141994271 AAATCCCATG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (16 bp):
ACATATCATGTATATC
Found at i:141994329 original size:25 final size:25
Alignment explanation
Indices: 141994301--141994348 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
141994291 ATATATAAAC
* * *
141994301 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
141994326 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
141994349 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:141995548 original size:27 final size:27
Alignment explanation
Indices: 141995518--141995603 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
141995508 TACCATACAG
*
141995518 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
** * ***
141995545 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA
* **
141995572 GGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
141995599 GGGTA
1 GGGTA
141995604 AAACAGTAAT
Statistics
Matches: 43, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:141995611 original size:27 final size:27
Alignment explanation
Indices: 141995581--141996164 Score: 637
Period size: 27 Copynumber: 21.6 Consensus size: 27
141995571 AGGGTATTTT
* *
141995581 AGTAATTTTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
141995608 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
141995635 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
141995662 GGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141995689 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
141995716 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
141995743 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * * *
141995770 GGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141995797 AGTAATTCTGTAAA-CTAAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
141995824 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* ** *
141995851 -GATAATTTTACAAATCGAAGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
141995878 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141995905 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141995932 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
141995959 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
141995986 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
141996013 GGTAATTCTGTAAATCGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
141996040 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141996067 -GATAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * **
141996094 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
141996121 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
141996148 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
141996165 GGAGTACTTT
Statistics
Matches: 482, Mismatches: 59, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.01
27 467 0.97
28 8 0.02
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:142005619 original size:47 final size:47
Alignment explanation
Indices: 142005565--142005695 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
142005555 GTGCGAATAA
* * * *
142005565 TACCTTGATTTAGCTACGGGCCATGGAATAGGTA-TTTAGAGAGGAGC
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAG-GAGAAGC
* *
142005612 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGATAAGG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGAGAAGC
* *
142005659 TACCTTGATTTGGCTATGGGCCATGGTATAGATACTT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTT
142005696 ATCGATTGTG
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
47 71 0.95
48 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCAGGAGAAGC
Found at i:142008600 original size:18 final size:20
Alignment explanation
Indices: 142008577--142008616 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
142008567 ATTTGTGATG
*
142008577 TTGATAT-GTTTAA-TTTAA
1 TTGATATGGCTTAATTTTAA
142008595 TTGATATGGCTTAATTTTAA
1 TTGATATGGCTTAATTTTAA
142008615 TT
1 TT
142008617 TATGCTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 5 0.26
20 7 0.37
ACGTcount: A:0.30, C:0.03, G:0.12, T:0.55
Consensus pattern (20 bp):
TTGATATGGCTTAATTTTAA
Found at i:142018626 original size:120 final size:120
Alignment explanation
Indices: 142018489--142018728 Score: 426
Period size: 120 Copynumber: 2.0 Consensus size: 120
142018479 TGGAACTCAA
* *
142018489 TCAAACTCTATGTGGACTCGACATTATCTGTCATACGATTCAGGCTTCTCTTAAACTTTATTCTT
1 TCAAACTCTATGTGGACTCGACATTATCTGTCATACGATTCAGGCTTCTCCTAAACTTCATTCTT
*
142018554 TTGATTCATTATTCATATTTATTTTCTATATCACTTTTATCATGTTTACGAGATC
66 TTGATTCATTATTCATATTTATTTTCTATATCAATTTTATCATGTTTACGAGATC
* *
142018609 TCAAACTCTATGTGGACTCGACATTATCTTTCATACGATTCAGGCTTCTCCTAAACTTCATTTTT
1 TCAAACTCTATGTGGACTCGACATTATCTGTCATACGATTCAGGCTTCTCCTAAACTTCATTCTT
*
142018674 TTGATTCATTATTCATGTTTATTTTCTATATCAATTTTATCATGTTTACGAGATC
66 TTGATTCATTATTCATATTTATTTTCTATATCAATTTTATCATGTTTACGAGATC
142018729 CATGAGGAAC
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 114 1.00
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (120 bp):
TCAAACTCTATGTGGACTCGACATTATCTGTCATACGATTCAGGCTTCTCCTAAACTTCATTCTT
TTGATTCATTATTCATATTTATTTTCTATATCAATTTTATCATGTTTACGAGATC
Found at i:142020646 original size:28 final size:27
Alignment explanation
Indices: 142020560--142020649 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
142020550 GTGACAGAGT
*
142020560 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
142020589 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
142020616 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
142020644 CACCAG
1 CACCAG
142020650 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:142020803 original size:28 final size:28
Alignment explanation
Indices: 142020758--142020816 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
142020748 TTAACCCTAG
*
142020758 GGGGTATAAAGGTCATTTTGCACACATA
1 GGGGTATAAAGGTAATTTTGCACACATA
* *
142020786 GGGGTATAATGGTAATTTTGCATACATA
1 GGGGTATAAAGGTAATTTTGCACACATA
142020814 GGG
1 GGG
142020817 ATATTCTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (28 bp):
GGGGTATAAAGGTAATTTTGCACACATA
Found at i:142022117 original size:24 final size:24
Alignment explanation
Indices: 142022090--142022136 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
142022080 CTAGATTTCC
*
142022090 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
142022114 TCCCTTATCAGCTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
142022137 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:142023527 original size:68 final size:70
Alignment explanation
Indices: 142023455--142023652 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
142023445 ACACCCTGTA
* * * *
142023455 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
142023517 ATAAAT
65 ATAAAT
*
142023523 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
142023588 ATAAAT
65 ATAAAT
*
142023594 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
142023653 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:142023566 original size:41 final size:41
Alignment explanation
Indices: 142023521--142023638 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
142023511 TGAAAGATAA
142023521 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
142023562 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
142023592 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
142023633 ATGTAG
1 ATGTAG
142023639 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:142023578 original size:71 final size:71
Alignment explanation
Indices: 142023489--142023652 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
142023479 GAGATGTATC
142023489 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
142023554 AGGACA
66 AGGACA
142023560 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
142023625 AGGACA
66 AGGACA
142023631 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
142023653 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:142031094 original size:68 final size:70
Alignment explanation
Indices: 142031022--142031219 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
142031012 ACACCCTGTA
* * * *
142031022 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
142031084 ATAAAT
65 ATAAAT
*
142031090 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
142031155 ATAAAT
65 ATAAAT
*
142031161 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
142031220 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:142031133 original size:41 final size:41
Alignment explanation
Indices: 142031088--142031205 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
142031078 TGAAAGATAA
142031088 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
142031129 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
142031159 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
142031200 ATGTAG
1 ATGTAG
142031206 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:142031145 original size:71 final size:71
Alignment explanation
Indices: 142031056--142031219 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
142031046 GAGATGTATC
142031056 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
142031121 AGGACA
66 AGGACA
142031127 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
142031192 AGGACA
66 AGGACA
142031198 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
142031220 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:142038142 original size:25 final size:25
Alignment explanation
Indices: 142038113--142038160 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
142038103 TTATAATATG
* *
142038113 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
142038138 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
142038161 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:142038211 original size:9 final size:9
Alignment explanation
Indices: 142038199--142038255 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
142038189 TTTGATAAAC
142038199 ATGATATGT
1 ATGATATGT
*
142038208 ATGATATGCAC
1 ATGATATG--T
*
142038219 ATGACATGT
1 ATGATATGT
*
142038228 ATGATATGCAC
1 ATGATATG--T
142038239 ATGATATGT
1 ATGATATGT
142038248 ATGATATG
1 ATGATATG
142038256 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:142038222 original size:20 final size:20
Alignment explanation
Indices: 142038197--142038267 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
142038187 ATTTTGATAA
142038197 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142038217 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
142038237 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142038257 ACATGAGATGT
1 ACATGATATGT
142038268 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:142038244 original size:11 final size:11
Alignment explanation
Indices: 142038208--142038262 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
142038198 CATGATATGT
142038208 ATGATATGCAC
1 ATGATATGCAC
* *
142038219 ATGACATG--T
1 ATGATATGCAC
142038228 ATGATATGCAC
1 ATGATATGCAC
*
142038239 ATGATATG--T
1 ATGATATGCAC
142038248 ATGATATGCAC
1 ATGATATGCAC
142038259 ATGA
1 ATGA
142038263 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:142038369 original size:24 final size:24
Alignment explanation
Indices: 142038312--142038478 Score: 214
Period size: 24 Copynumber: 7.0 Consensus size: 24
142038302 GGAGGAAGTG
*
142038312 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142038336 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142038359 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142038383 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142038407 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
142038430 TAAAAGGGCTTTTTCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142038454 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
142038479 ATGATAAAGT
Statistics
Matches: 127, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
23 43 0.34
24 73 0.57
25 11 0.09
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:142038412 original size:47 final size:46
Alignment explanation
Indices: 142038314--142038479 Score: 208
Period size: 47 Copynumber: 3.5 Consensus size: 46
142038304 AGGAAGTGCA
* * *
142038314 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
*
142038361 AAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* *
142038408 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
142038455 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
142038480 TGATAAAGTA
Statistics
Matches: 106, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
47 62 0.58
48 34 0.32
49 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:142038428 original size:71 final size:71
Alignment explanation
Indices: 142038312--142038478 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
142038302 GGAGGAAGTG
* *
142038312 CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142038377 AGTTAT
66 AGTTAT
* * *
142038383 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTTCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142038448 AGTTAT
66 AGTTAT
* *
142038454 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
142038479 ATGATAAAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:142047104 original size:29 final size:29
Alignment explanation
Indices: 142047068--142047230 Score: 202
Period size: 29 Copynumber: 5.6 Consensus size: 29
142047058 AATAAACGAT
***
142047068 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
142047097 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
142047126 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
142047155 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* ** *
142047184 TTCGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
142047213 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
142047231 ATCTTGTCAC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.02
29 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:142055120 original size:29 final size:29
Alignment explanation
Indices: 142055084--142055246 Score: 202
Period size: 29 Copynumber: 5.6 Consensus size: 29
142055074 AATAAACGAT
***
142055084 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
142055113 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
142055142 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
142055171 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* ** *
142055200 TTCGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
142055229 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
142055247 ATCTTGTCAC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.02
29 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:142062781 original size:40 final size:40
Alignment explanation
Indices: 142062733--142062923 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
142062723 ATAACAACTC
142062733 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
142062773 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
142062813 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
142062853 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
142062893 GCACAAAAGCCTTCGGG-ATTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
142062924 CATTCGAATA
Statistics
Matches: 135, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:142062861 original size:80 final size:80
Alignment explanation
Indices: 142062704--142062923 Score: 290
Period size: 80 Copynumber: 2.8 Consensus size: 80
142062694 ACCCAAGTAT
* *
142062704 CTTCAGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTC-GGATCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
*
142062766 GTCACTAGCATAAATGC
64 GTCACTAGCACAAATGC
*
142062783 CTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
142062847 -CAACTCGCACAAATGC
65 TC-ACTAGCACAAATGC
* * *
142062863 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTCGGG-ATTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
142062924 CATTCGAATA
Statistics
Matches: 126, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
79 28 0.22
80 97 0.77
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:142063016 original size:18 final size:18
Alignment explanation
Indices: 142062993--142063031 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
142062983 TTACTAAAGC
142062993 TCAAACACAAGACACTTA
1 TCAAACACAAGACACTTA
142063011 TCAAACACAAGACACTTA
1 TCAAACACAAGACACTTA
142063029 TCA
1 TCA
142063032 CACTTACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.28, G:0.05, T:0.18
Consensus pattern (18 bp):
TCAAACACAAGACACTTA
Found at i:142064963 original size:75 final size:75
Alignment explanation
Indices: 142064828--142064992 Score: 176
Period size: 75 Copynumber: 2.2 Consensus size: 75
142064818 GGCTGTCATA
** *
142064828 GCGATCTTAAATCAGTGGACCGTAATGATATCAACTGTGAATGTAGGTTCTTGAGCTATTAGAAA
1 GCGATCTTAAATCAGTGGACCGTAATGATATCAACTGTGAACATAGGTTCTCGAGCTATTAGAAA
**
142064893 ATCAAGAGTT
66 ATCAAGAGAC
* *
142064903 GCGATCTTAAATCAGTGGATCGTAAAT-ATAAT-AGA-TGTGAACATAGG-TCATCGAGGTATTA
1 GCGATCTTAAATCAGTGGACCGT-AATGAT-ATCA-ACTGTGAACATAGGTTC-TCGAGCTATTA
* * *
142064964 GATAATCGAGGGAC
62 GAAAATCAAGAGAC
142064978 GCGATCTTAAATCAG
1 GCGATCTTAAATCAG
142064993 CAAACAGTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
74 2 0.03
75 68 0.89
76 6 0.08
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (75 bp):
GCGATCTTAAATCAGTGGACCGTAATGATATCAACTGTGAACATAGGTTCTCGAGCTATTAGAAA
ATCAAGAGAC
Found at i:142066508 original size:46 final size:45
Alignment explanation
Indices: 142066458--142066633 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
142066448 TGGTTGAGCA
142066458 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
142066504 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
142066551 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
142066597 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
142066634 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:142066614 original size:93 final size:93
Alignment explanation
Indices: 142066455--142066625 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
142066445 GGATGGTTGA
* *
142066455 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
142066520 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
142066548 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
142066613 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
142066626 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:142069029 original size:7 final size:7
Alignment explanation
Indices: 142069017--142069055 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
142069007 GAAAATAGAT
142069017 AAAGACA
1 AAAGACA
142069024 AAAGACA
1 AAAGACA
142069031 AAAGACA
1 AAAGACA
142069038 AAAGACA
1 AAAGACA
142069045 AAAGACA
1 AAAGACA
142069052 AAAG
1 AAAG
142069056 TTGAAATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.72, C:0.13, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAGACA
Found at i:142071072 original size:17 final size:18
Alignment explanation
Indices: 142071038--142071078 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
142071028 AGCCAGTTTT
*
142071038 TATTTTTATTATAGTTTC
1 TATTTTTATTATAATTTC
142071056 -ATTTTTAGTT-TAATTTC
1 TATTTTTA-TTATAATTTC
142071073 TATTTT
1 TATTTT
142071079 CTAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (18 bp):
TATTTTTATTATAATTTC
Found at i:142071235 original size:24 final size:24
Alignment explanation
Indices: 142071208--142071255 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
142071198 GCAAGGCAGA
*
142071208 GTCCACAGAGTATAGTAGACGAGC
1 GTCCACAGAGTATAGTAAACGAGC
142071232 GTCCACAGAGTATAGTAAACGAGC
1 GTCCACAGAGTATAGTAAACGAGC
142071256 AAGAGGACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (24 bp):
GTCCACAGAGTATAGTAAACGAGC
Found at i:142072228 original size:37 final size:37
Alignment explanation
Indices: 142072178--142072252 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
142072168 GGTCCTAGCA
*
142072178 TGGAGAATGAGCAAATAAATTACATGGGTAATAATTC
1 TGGACAATGAGCAAATAAATTACATGGGTAATAATTC
* **
142072215 TGGACAATTAGCAAATAAATTATGTGGGTAATAATTC
1 TGGACAATGAGCAAATAAATTACATGGGTAATAATTC
142072252 T
1 T
142072253 AGACCTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (37 bp):
TGGACAATGAGCAAATAAATTACATGGGTAATAATTC
Found at i:142077761 original size:4 final size:4
Alignment explanation
Indices: 142077739--142077796 Score: 55
Period size: 4 Copynumber: 13.8 Consensus size: 4
142077729 CCATTTTCCA
*
142077739 ATTT ATTTT ATCTT CTTT ATTT ATTT ATTCT A-TT ATTTT ATTT ATTT
1 ATTT A-TTT AT-TT ATTT ATTT ATTT ATT-T ATTT A-TTT ATTT ATTT
*
142077786 AGTT ATTT ATT
1 ATTT ATTT ATT
142077797 GTCTATTTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
3 2 0.04
4 31 0.69
5 12 0.27
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:142077778 original size:17 final size:17
Alignment explanation
Indices: 142077758--142077793 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
142077748 ATCTTCTTTA
142077758 TTTATTTATTCTA-TTAT
1 TTTATTTATT-TAGTTAT
142077775 TTTATTTATTTAGTTAT
1 TTTATTTATTTAGTTAT
142077792 TT
1 TT
142077794 ATTGTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTATTTATTTAGTTAT
Found at i:142077795 original size:21 final size:21
Alignment explanation
Indices: 142077754--142077840 Score: 61
Period size: 21 Copynumber: 3.9 Consensus size: 21
142077744 TTTTATCTTC
*
142077754 TTTATTTATTTATTCTATTAT
1 TTTATTTATTTATTATATTAT
142077775 TTTATTTATTTAGTTAT-TTAT
1 TTTATTTATTTA-TTATATTAT
* *
142077796 TGTCTATTTCTTTTGATTATTTTTAT
1 T-T-TATTT-ATTT-ATTA-TATTAT
*
142077822 TTTCTTT-TTTATTCATATT
1 TTTATTTATTTATT-ATATT
142077841 CTTAATTTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
21 23 0.43
22 8 0.15
23 5 0.09
24 10 0.19
25 3 0.06
26 5 0.09
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (21 bp):
TTTATTTATTTATTATATTAT
Found at i:142082800 original size:25 final size:25
Alignment explanation
Indices: 142082745--142082811 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
142082735 ATTTTTATTT
* *
142082745 TTATGTTCATTATTATTTTCTTGGAC
1 TTAT-TTCATTATTATCTTCTTGAAC
*
142082771 TTATTTCATTTTTATCTT-TTGAAC
1 TTATTTCATTATTATCTTCTTGAAC
*
142082795 TATATTATTATTATTAT
1 T-TATT-TCATTATTAT
142082812 GGTTGTTTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 6 0.18
25 16 0.47
26 12 0.35
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.61
Consensus pattern (25 bp):
TTATTTCATTATTATCTTCTTGAAC
Found at i:142086599 original size:18 final size:20
Alignment explanation
Indices: 142086576--142086612 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
142086566 TGTCCCCTCT
142086576 TTAAGTTT-G-AAAATTTTA
1 TTAAGTTTCGAAAAATTTTA
142086594 TTAAGTTTCGAAAAATTTT
1 TTAAGTTTCGAAAAATTTT
142086613 GTATGTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (20 bp):
TTAAGTTTCGAAAAATTTTA
Found at i:142090726 original size:29 final size:30
Alignment explanation
Indices: 142090595--142090756 Score: 201
Period size: 29 Copynumber: 5.6 Consensus size: 30
142090585 GTGACGAGAT
142090595 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
142090624 TGGCACTAAGTGTGCG-TGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
142090653 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* **
142090682 TGGCACTAAGTGTGCGA-GCTCGAAAGGTA
1 TGGCACTAAGTGTGCGATGCTGGAAATATA
* * * **
142090711 TGGCACTATGTGTGCG-GGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGATGCTGGAAAT-ATA
142090740 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
142090757 AATCGAGTAT
Statistics
Matches: 119, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
28 3 0.03
29 115 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGATGCTGGAAATATA
Found at i:142098494 original size:29 final size:29
Alignment explanation
Indices: 142098461--142098619 Score: 189
Period size: 29 Copynumber: 5.6 Consensus size: 29
142098451 GTGACGAGAT
142098461 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
142098490 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
142098519 TGGCACTAA--GTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
142098546 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
142098575 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
142098604 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
142098620 AAATCGAGTA
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
27 26 0.23
28 2 0.02
29 85 0.75
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:142098577 original size:56 final size:57
Alignment explanation
Indices: 142098457--142098582 Score: 175
Period size: 56 Copynumber: 2.2 Consensus size: 57
142098447 TACGGTGACG
* * *
142098457 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA
1 AGATATGGCACTAAG-GTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
*
142098514 ATATATGGCACTAA-GTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
* *
142098570 GGGTATGGCACTA
1 AGATATGGCACTA
142098583 TGTGTGCGGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 49 0.80
57 3 0.05
58 9 0.15
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (57 bp):
AGATATGGCACTAAGGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAA
Found at i:142103752 original size:49 final size:49
Alignment explanation
Indices: 142103582--142103808 Score: 274
Period size: 49 Copynumber: 4.6 Consensus size: 49
142103572 TGAGGTCGCA
* * * * *
142103582 TGTGTAGTAATAAGTGTAGGCTACTATGTGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-TGGTCACG
* * * **
142103633 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCACG
*
142103683 TGTGTTGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
* * * * *
142103732 TGTGCAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
*
142103781 TGTGTAGTACTATGTGCAGGCTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
142103809 CGTGTGACAG
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 75 0.50
50 43 0.29
51 32 0.21
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
Found at i:142103761 original size:99 final size:100
Alignment explanation
Indices: 142103575--142103808 Score: 301
Period size: 99 Copynumber: 2.4 Consensus size: 100
142103565 TCTATTGTGA
* * * *
142103575 GGTCGCATGTGTAGTAATAAGTGTAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGCAG
* * **
142103640 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTACAGGCTACTACGTGTACCAGATAATT
* * * * *
142103675 AGGTCACGTGTGTTGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-TGGTCACGTGTGCA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGCA
*
142103738 GTACTAAGTACAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTACAGGCTACTACGTGTACCAGATAATT
* *
142103774 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
142103809 CGTGTGACAG
Statistics
Matches: 115, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 31 0.27
99 43 0.37
100 1 0.01
101 40 0.35
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGCAG
TACTAAGTACAGGCTACTACGTGTACCAGATAATT
Found at i:142105624 original size:40 final size:40
Alignment explanation
Indices: 142105518--142105701 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
142105508 TGCTGGAAAT
* * * * * **
142105518 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
142105558 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
142105598 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
142105636 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
142105677 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
142105702 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:142113656 original size:40 final size:40
Alignment explanation
Indices: 142113607--142113790 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
142113597 TGCTGGAAAT
* * * * **
142113607 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
142113647 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* * * *
142113687 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCA-
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* * * ** * * *
142113725 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* * *
142113766 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
142113791 GTTTGAACGA
Statistics
Matches: 117, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.01
39 30 0.26
40 86 0.74
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
Found at i:142118204 original size:15 final size:14
Alignment explanation
Indices: 142118179--142118241 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
142118169 CATAGTATCG
142118179 TATCTTGGGTTTCTT
1 TATC-TGGGTTTCTT
142118194 TACTCTGGGTTTCTT
1 TA-TCTGGGTTTCTT
* *
142118209 TATTCTAGGTTTCTC
1 TA-TCTGGGTTTCTT
*
142118224 TATCTTGGATTTCTT
1 TATC-TGGGTTTCTT
142118239 TAT
1 TAT
142118242 TCGGTTTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (14 bp):
TATCTGGGTTTCTT
Found at i:142118222 original size:30 final size:30
Alignment explanation
Indices: 142118186--142118243 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
142118176 TCGTATCTTG
* *
142118186 GGTTTCTTTA-CTCTGGGTTTCTTTATTCTA
1 GGTTTCTCTATCT-TGGATTTCTTTATTCTA
142118216 GGTTTCTCTATCTTGGATTTCTTTATTC
1 GGTTTCTCTATCTTGGATTTCTTTATTC
142118244 GGTTTTCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
GGTTTCTCTATCTTGGATTTCTTTATTCTA
Found at i:142118252 original size:14 final size:14
Alignment explanation
Indices: 142118186--142118248 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 14
142118176 TCGTATCTTG
*
142118186 GGTTTCTTTACTCT
1 GGTTTCTTTATTCT
142118200 GGGTTTCTTTATTCT
1 -GGTTTCTTTATTCT
*
142118215 AGGTTTCTCTA-TCTT
1 -GGTTTCTTTATTC-T
142118230 GGATTTCTTTATTC-
1 GG-TTTCTTTATTCT
142118244 GGTTT
1 GGTTT
142118249 TCTTGTTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 3 0.07
14 6 0.15
15 30 0.73
16 2 0.05
ACGTcount: A:0.10, C:0.16, G:0.17, T:0.57
Consensus pattern (14 bp):
GGTTTCTTTATTCT
Found at i:142120548 original size:49 final size:49
Alignment explanation
Indices: 142120385--142120607 Score: 261
Period size: 49 Copynumber: 4.5 Consensus size: 49
142120375 TGAGGTCGCA
* * * *
142120385 TGTGTAGTACTAA-TGCAGGCTACTATGCGTACC-GAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * * **
142120434 TGTGTAGTACTAAGTGCAGGTTGCTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
* *
142120484 TGTGTAGTACTAAGTACAGGCTACTAAGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
142120533 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
142120582 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
142120608 TGCGTACCAG
Statistics
Matches: 149, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
49 91 0.61
50 56 0.38
51 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:142120560 original size:99 final size:99
Alignment explanation
Indices: 142120378--142120615 Score: 284
Period size: 99 Copynumber: 2.4 Consensus size: 99
142120368 TCTATTGTGA
* *
142120378 GGTCGCATGTGTAGTACTAA-TGCAGGCTACTATGCGTACCGAAAACTGTGATCACGTGTGTAGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCGAAAACTGTGATCACGTGTGTAGT
* * * * **
142120442 ACTAAGTGCAGGTTGCTACGTGTATCAGATGGTT
66 ACTAAGTACAGGCTACTACGTGTACCAGATAATT
* * * * *
142120476 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTAAGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACC-GAAAACTGTGATCACGTGTGTA
*
142120539 GTACTAAGTACAGGCTACTACGTGTACCGGATAATT
64 GTACTAAGTACAGGCTACTACGTGTACCAGATAATT
* * *
142120575 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACC
142120616 AGATAGCTTT
Statistics
Matches: 117, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
98 35 0.30
99 60 0.51
100 18 0.15
101 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTAAGCGTACCGAAAACTGTGATCACGTGTGTAGT
ACTAAGTACAGGCTACTACGTGTACCAGATAATT
Found at i:142122921 original size:242 final size:242
Alignment explanation
Indices: 142122486--142122971 Score: 846
Period size: 242 Copynumber: 2.0 Consensus size: 242
142122476 TGAGAATTAC
142122486 TATGCTTGTGATTTTAGGCAATGTGATACATAAATGAAAGTGACCATTTAGGTGATTTGAGAATA
1 TATGCTTGTGATTTTAGGCAATGTGATACATAAATGAAAGTGACCATTTAGGTGATTTGAGAATA
*
142122551 TGAATTTGGTATGAAATTGAATGACTATTTGTGATACTTGTATGTCATATAAATGATAGTATGGA
66 TGAATTTGGTATGAAATTGAATGACTATTTGCGATACTTGTATGTCATATAAATGATAGTATGGA
* * *
142122616 TTTAGCATGAATTAGGAATGGTTGAGATTGGTTGGAATGCCTACTTATGCCACATTCTATGCCTT
131 TTTAGCATGAATTAGGAATGGTTAAGATTGGTTGAAATGCCTACTTATGCCACATTATATGCCTT
* *
142122681 TTGGTTAGGTGTAGGTGATTGCAATTTGGGTGAGAAAGATGGCTTGG
196 TTGGTTAGGTGTAGGTGATTGCAATTTGGATGAGAAAGATGGCATGG
* *
142122728 TATGCTTGTGATTTTAGGCAATGTGATGCATAAATGAAAGTGACCATTTAGGTGATTTGAGAATG
1 TATGCTTGTGATTTTAGGCAATGTGATACATAAATGAAAGTGACCATTTAGGTGATTTGAGAATA
*
142122793 TGAATTTGGTATGAAATTGAATGACTATTTGCGATACTTGTATGTCATATAGATGATAGTATGGA
66 TGAATTTGGTATGAAATTGAATGACTATTTGCGATACTTGTATGTCATATAAATGATAGTATGGA
* ** *
142122858 TTTAGTATGAATTAGGCTTGGTTAAGATTGGTTGAAATGCCTACTTATGCCATATTATATGCCTT
131 TTTAGCATGAATTAGGAATGGTTAAGATTGGTTGAAATGCCTACTTATGCCACATTATATGCCTT
*
142122923 TTGGTTGGGTGTAGGTGATTGCAATTTGGATGAGAAAGATGGCATGG
196 TTGGTTAGGTGTAGGTGATTGCAATTTGGATGAGAAAGATGGCATGG
142122970 TA
1 TA
142122972 AATAGCCTAT
Statistics
Matches: 230, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
242 230 1.00
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.37
Consensus pattern (242 bp):
TATGCTTGTGATTTTAGGCAATGTGATACATAAATGAAAGTGACCATTTAGGTGATTTGAGAATA
TGAATTTGGTATGAAATTGAATGACTATTTGCGATACTTGTATGTCATATAAATGATAGTATGGA
TTTAGCATGAATTAGGAATGGTTAAGATTGGTTGAAATGCCTACTTATGCCACATTATATGCCTT
TTGGTTAGGTGTAGGTGATTGCAATTTGGATGAGAAAGATGGCATGG
Found at i:142130696 original size:9 final size:9
Alignment explanation
Indices: 142130684--142130740 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
142130674 TTTGATAAAC
142130684 ATGATATGT
1 ATGATATGT
*
142130693 ATGATATGCAC
1 ATGATATG--T
*
142130704 ATGACATGT
1 ATGATATGT
*
142130713 ATGATATGCAC
1 ATGATATG--T
142130724 ATGATATGT
1 ATGATATGT
142130733 ATGATATG
1 ATGATATG
142130741 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:142130707 original size:20 final size:20
Alignment explanation
Indices: 142130682--142130752 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
142130672 ATTTTGATAA
142130682 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142130702 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
142130722 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142130742 ACATGAGATGT
1 ACATGATATGT
142130753 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:142130729 original size:11 final size:11
Alignment explanation
Indices: 142130693--142130747 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
142130683 CATGATATGT
142130693 ATGATATGCAC
1 ATGATATGCAC
* *
142130704 ATGACATG--T
1 ATGATATGCAC
142130713 ATGATATGCAC
1 ATGATATGCAC
*
142130724 ATGATATG--T
1 ATGATATGCAC
142130733 ATGATATGCAC
1 ATGATATGCAC
142130744 ATGA
1 ATGA
142130748 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:142130854 original size:24 final size:24
Alignment explanation
Indices: 142130797--142131010 Score: 310
Period size: 24 Copynumber: 9.0 Consensus size: 24
142130787 GGAGGAAGTG
142130797 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142130821 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142130844 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142130868 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142130892 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142130915 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142130939 -TAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142130962 TAAAAGGGCTTCTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142130986 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
142131011 ATGATAAAGC
Statistics
Matches: 174, Mismatches: 11, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
23 65 0.37
24 98 0.56
25 11 0.06
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:142130866 original size:47 final size:47
Alignment explanation
Indices: 142130798--142131010 Score: 313
Period size: 47 Copynumber: 4.5 Consensus size: 47
142130788 GAGGAAGTGC
*
142130798 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
142130844 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
*
142130892 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* * * *
142130939 TAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTCTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
142130987 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
142131011 ATGATAAAGC
Statistics
Matches: 154, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
47 112 0.73
48 32 0.21
49 10 0.06
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:142130913 original size:71 final size:71
Alignment explanation
Indices: 142130797--142131010 Score: 342
Period size: 71 Copynumber: 3.0 Consensus size: 71
142130787 GGAGGAAGTG
142130797 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142130862 AGTTAT
66 AGTTAT
142130868 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142130933 AGTTAT
66 AGTTAT
* * * * *
142130939 -TAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTCTGCCCCAGTTATTAAAAGAGGC-TAGGCC
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC
142131002 TCCAGTTAT
64 -CCAGTTAT
142131011 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
70 22 0.16
71 102 0.76
72 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:142131292 original size:31 final size:31
Alignment explanation
Indices: 142131204--142131298 Score: 154
Period size: 31 Copynumber: 3.1 Consensus size: 31
142131194 CGTTTACAGT
*
142131204 AAAGGCTTCGGCCCAGTAATATGAAACTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
142131235 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
** *
142131266 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
142131297 AA
1 AA
142131299 TATGAAAAGG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATTTGA
Found at i:142134529 original size:22 final size:21
Alignment explanation
Indices: 142134504--142134544 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
142134494 TTTATTCTAA
*
142134504 TCTTAATCTTATTTCTTTTTGC
1 TCTTAATCTT-TTTATTTTTGC
*
142134526 TCTTATTCTTTTTATTTTT
1 TCTTAATCTTTTTATTTTT
142134545 CCTAAAAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.12, C:0.15, G:0.02, T:0.71
Consensus pattern (21 bp):
TCTTAATCTTTTTATTTTTGC
Found at i:142136017 original size:20 final size:20
Alignment explanation
Indices: 142135992--142136055 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
142135982 ATTTTGATAA
142135992 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142136012 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
142136032 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
142136052 ACAT
1 ACAT
142136056 AAGATGTTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:142136164 original size:24 final size:24
Alignment explanation
Indices: 142136107--142136320 Score: 301
Period size: 24 Copynumber: 9.0 Consensus size: 24
142136097 GGAGGAAGTG
*
142136107 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142136131 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142136154 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142136178 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142136202 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
142136225 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
142136249 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142136272 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
142136296 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
142136321 ATGATAAAGC
Statistics
Matches: 173, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
23 64 0.37
24 98 0.57
25 11 0.06
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:142136176 original size:47 final size:47
Alignment explanation
Indices: 142136108--142136320 Score: 304
Period size: 47 Copynumber: 4.5 Consensus size: 47
142136098 GAGGAAGTGC
* *
142136108 AAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
*
142136154 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAATTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
*
142136202 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* * *
142136249 TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
142136297 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
142136321 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
47 111 0.73
48 31 0.20
49 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:142136223 original size:71 final size:71
Alignment explanation
Indices: 142136107--142136320 Score: 333
Period size: 71 Copynumber: 3.0 Consensus size: 71
142136097 GGAGGAAGTG
*
142136107 CAAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142136172 AGTTAT
66 AGTTAT
*
142136178 CAAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
142136243 AGTTAT
66 AGTTAT
* * * *
142136249 -TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCC
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC
142136312 TCCAGTTAT
64 -CCAGTTAT
142136321 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
70 22 0.17
71 100 0.75
72 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:142136600 original size:31 final size:31
Alignment explanation
Indices: 142136512--142136606 Score: 145
Period size: 31 Copynumber: 3.1 Consensus size: 31
142136502 CGTTTACAGT
*
142136512 AAAGGCTTCGGCCCAGTAATATGAAACTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
*
142136543 AAAGGCTTCAGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
** *
142136574 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
142136605 AA
1 AA
142136607 TATGAAAAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATTTGA
Found at i:142142323 original size:40 final size:40
Alignment explanation
Indices: 142142270--142142465 Score: 281
Period size: 40 Copynumber: 4.9 Consensus size: 40
142142260 GGATATTGCT
* *
142142270 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
142142310 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
142142350 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* *
142142390 ACTCGCACAAATGGCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
142142430 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
142142466 CATCCGAATA
Statistics
Matches: 142, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
40 139 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:142148938 original size:29 final size:29
Alignment explanation
Indices: 142148905--142149036 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
142148895 GTGACGAGAT
*
142148905 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
142148934 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
142148963 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
142148992 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
142149021 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
142149037 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:142157101 original size:40 final size:40
Alignment explanation
Indices: 142157039--142157220 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
142157029 TAGCTACTTT
*
142157039 CAAATGCC-T-GGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
142157077 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
142157117 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
142157155 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
142157196 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
142157221 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
38 33 0.26
39 22 0.18
40 57 0.46
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:142157147 original size:78 final size:80
Alignment explanation
Indices: 142157048--142157220 Score: 228
Period size: 78 Copynumber: 2.2 Consensus size: 80
142157038 TCAAATGCCT
* *
142157048 GGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAATAA
1 GGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATTTAATAA
* *
142157111 C-TCGCACAATGCCTTC
64 CTTAGCACAAAGCCTTC
** * *
142157127 GGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACT
1 GGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAATAACT
142157191 TAGCACAAAGCCTTC
66 TAGCACAAAGCCTTC
142157206 GGGACTTAGCCCGGA
1 GGGACTTAGCCCGGA
142157221 CATCATTCGA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 3 0.04
78 48 0.59
79 20 0.24
80 11 0.13
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
GGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAATAACT
TAGCACAAAGCCTTC
Found at i:142165221 original size:40 final size:39
Alignment explanation
Indices: 142165177--142165268 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
142165167 GCTACTCGTT
*
142165177 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAATCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAAATCGCA
* *
142165217 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAAATCGCA
142165256 CAAATGCCTTCGG
1 CAAATGCCTTCGG
142165269 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAAATCGCA
Done.