Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr14 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 244914714 ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31 Warning! 4503000 characters in sequence are not A, C, G, or T File 465 of 770 Found at i:143458181 original size:40 final size:40 Alignment explanation
Indices: 143458136--143458302 Score: 185 Period size: 40 Copynumber: 4.2 Consensus size: 40 143458126 CGGAATATAA 143458136 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * * 143458176 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC * * * 143458216 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * * * 143458256 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 143458295 CCGGATAT 1 CCGGATAT 143458303 CATTCAATTT Statistics Matches: 107, Mismatches: 19, Indels: 3 0.83 0.15 0.02 Matches are distributed among these distances: 39 14 0.13 40 93 0.87 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:143458286 original size:80 final size:79 Alignment explanation
Indices: 143458136--143458302 Score: 205 Period size: 80 Copynumber: 2.1 Consensus size: 79 143458126 CGGAATATAA * * 143458136 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG 1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG 143458201 CCTTCGGGCCTTAGC 66 CCTTCGGG-CTTAGC * * ** * 143458216 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA 1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA * 143458278 TTGTCTTCGGGCTTAGC 64 -TGCCTTCGGGCTTAGC 143458295 CCGGATAT 1 CCGGATAT 143458303 CATTCAATTT Statistics Matches: 76, Mismatches: 8, Indels: 7 0.84 0.09 0.08 Matches are distributed among these distances: 79 18 0.24 80 58 0.76 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26 Consensus pattern (79 bp): CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG CCTTCGGGCTTAGC Found at i:143459150 original size:17 final size:19 Alignment explanation
Indices: 143459127--143459172 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 143459117 AAGAAGCATG 143459127 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 143459145 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 143459163 AATCATGCTC 1 AATCATGCTC 143459173 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:143461672 original size:40 final size:39 Alignment explanation
Indices: 143461551--143461704 Score: 209 Period size: 39 Copynumber: 3.9 Consensus size: 39 143461541 TGTGTATGAA * 143461551 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * 143461590 TGTGCAAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 143461629 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT * * * * * 143461669 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGG 143461705 TGTTTGAACA Statistics Matches: 103, Mismatches: 11, Indels: 1 0.90 0.10 0.01 Matches are distributed among these distances: 39 62 0.60 40 41 0.40 ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25 Consensus pattern (39 bp): TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:143461690 original size:79 final size:79 Alignment explanation
Indices: 143461551--143461704 Score: 211 Period size: 79 Copynumber: 1.9 Consensus size: 79 143461541 TGTGTATGAA * * * 143461551 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTGTGATATCCGGGCTAA 1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTATCATAACCGGGCTAA 143461616 G-CCCGAAGGCAAT 66 GTCCCGAAGGCAAT * * * ** 143461629 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTA 1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAGTTATCATAACCGGGCTA * 143461694 TGTCCCGAAGG 65 AGTCCCGAAGG 143461705 TGTTTGAACA Statistics Matches: 65, Mismatches: 9, Indels: 2 0.86 0.12 0.03 Matches are distributed among these distances: 78 25 0.38 79 32 0.49 80 8 0.12 ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25 Consensus pattern (79 bp): TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTATCATAACCGGGCTAA GTCCCGAAGGCAAT Found at i:143466688 original size:49 final size:48 Alignment explanation
Indices: 143466617--143466710 Score: 179 Period size: 49 Copynumber: 1.9 Consensus size: 48 143466607 AGTATTAAAT 143466617 AGTGCATTTGTTATTATAAATGAAGAAATACCGAATCTGAACCTAATA 1 AGTGCATTTGTTATTATAAATGAAGAAATACCGAATCTGAACCTAATA 143466665 AGTGCATTTTGTTATTATAAATGAAGAAATACCGAATCTGAACCTA 1 AGTGCA-TTTGTTATTATAAATGAAGAAATACCGAATCTGAACCTA 143466711 GACCAAGGGA Statistics Matches: 45, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 48 6 0.13 49 39 0.87 ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32 Consensus pattern (48 bp): AGTGCATTTGTTATTATAAATGAAGAAATACCGAATCTGAACCTAATA Found at i:143467124 original size:48 final size:47 Alignment explanation
Indices: 143466961--143467227 Score: 139 Period size: 48 Copynumber: 5.6 Consensus size: 47 143466951 TTGTGAACTA * * * * 143466961 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAT-AAG-AGCTT 1 GTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGTAGTAGC-T * * * 143467007 GTGTAAGACCATGTCTGGGACATGGCATTGACATTGAGATG-AGT-GCT 1 GTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAGTAGCT * ** 143467054 AGTGTAAGA-ATTATCTAAGACATGCATCGACCTCGAGATGTAAGTCAG-T 1 -GTGTAAGACA-TGTCTGGGACATGCATCGACCTCGAGATGT-AGT-AGCT * 143467103 GTGTAAGACATGTCTGGGACATGCATCTG--CTACGAGATGT-GT--CA 1 GTGTAAGACATGTCTGGGACATGCATC-GACCT-CGAGATGTAGTAGCT * * * * 143467147 GTGTAAGACCATGTCTGGGACACAGCATCAACAC-AGATATGCTAG-AGCTT 1 GTGTAAGA-CATGTCTGGGACA-TGCATCGAC-CTCGAGATG-TAGTAGC-T * 143467197 GTGTAAGACCATGTCTAGGACATGACATCGA 1 GTGTAAGA-CATGTCTGGGACATG-CATCGA 143467228 TACCTTACCC Statistics Matches: 171, Mismatches: 24, Indels: 48 0.70 0.10 0.20 Matches are distributed among these distances: 44 8 0.05 45 13 0.08 46 35 0.20 47 27 0.16 48 55 0.32 49 6 0.04 50 27 0.16 ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25 Consensus pattern (47 bp): GTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAGTAGCT Found at i:143468305 original size:20 final size:21 Alignment explanation
Indices: 143468267--143468305 Score: 62 Period size: 21 Copynumber: 1.9 Consensus size: 21 143468257 GAATTAATTC * 143468267 CACATGGGCGTGCTGCCCTTA 1 CACACGGGCGTGCTGCCCTTA 143468288 CACACGGGCGTG-TGCCCT 1 CACACGGGCGTGCTGCCCT 143468306 GTTTCAAAGA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 20 6 0.35 21 11 0.65 ACGTcount: A:0.13, C:0.36, G:0.31, T:0.21 Consensus pattern (21 bp): CACACGGGCGTGCTGCCCTTA Found at i:143470541 original size:45 final size:45 Alignment explanation
Indices: 143470401--143470557 Score: 210 Period size: 45 Copynumber: 3.5 Consensus size: 45 143470391 GCCCCTGATA * * * 143470401 TGGTCTTACAC-ATAACCACATAGATCGATGCCAATGTCCCAGATG 1 TGGTCTTACACGA-AAACACATATATCGATGCCAATGTCCCAGACG * * * 143470446 TGGTCTTACACGAAAACAC-TATATTGATGCCAATGTCCTAGACA 1 TGGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAGACG * * * 143470490 TCGTCTTATACGAAAACACATATATCGATGCCAACGTCCCAGACG 1 TGGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAGACG 143470535 TGGTCTTACACGAAAACACATAT 1 TGGTCTTACACGAAAACACATAT 143470558 TAGAATCTTG Statistics Matches: 96, Mismatches: 14, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 44 37 0.39 45 58 0.60 46 1 0.01 ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25 Consensus pattern (45 bp): TGGTCTTACACGAAAACACATATATCGATGCCAATGTCCCAGACG Found at i:143472409 original size:68 final size:64 Alignment explanation
Indices: 143472286--143472543 Score: 220 Period size: 68 Copynumber: 3.9 Consensus size: 64 143472276 TGGATGATAC * ** * * * 143472286 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA 1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA 143472349 CAAG 63 C--G * * 143472353 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC 1 AGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC 143472418 G 64 G * * * * * * * 143472419 GGATATATGTAGCTAGGTCGTATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTAC 1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTAC 143472484 G 64 G * * * 143472485 AGATAAAT-TAGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC 1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC 143472544 CGAACTATAT Statistics Matches: 156, Mismatches: 27, Indels: 20 0.77 0.13 0.10 Matches are distributed among these distances: 62 1 0.01 63 19 0.12 64 24 0.15 65 24 0.15 66 35 0.22 67 4 0.03 68 48 0.31 69 1 0.01 ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25 Consensus pattern (64 bp): AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG Found at i:143476998 original size:22 final size:22 Alignment explanation
Indices: 143476970--143477041 Score: 69 Period size: 22 Copynumber: 3.2 Consensus size: 22 143476960 ATGTGTATAT 143476970 ATGTGATAAGGCCGAATGGCCA 1 ATGTGATAAGGCCGAATGGCCA * 143476992 ATGTGATGAATG-CGAGCAT-G-CA 1 ATGTGAT-AAGGCCGA--ATGGCCA * 143477014 TGTGTGATAAGGCCGAATGGCCA 1 -ATGTGATAAGGCCGAATGGCCA 143477037 ATGTG 1 ATGTG 143477042 GTGAATATGA Statistics Matches: 39, Mismatches: 4, Indels: 14 0.68 0.07 0.25 Matches are distributed among these distances: 21 2 0.05 22 20 0.51 23 15 0.38 24 2 0.05 ACGTcount: A:0.29, C:0.15, G:0.33, T:0.22 Consensus pattern (22 bp): ATGTGATAAGGCCGAATGGCCA Found at i:143476999 original size:47 final size:47 Alignment explanation
Indices: 143476945--143477230 Score: 414 Period size: 47 Copynumber: 6.1 Consensus size: 47 143476935 TTAGGATTTT ** * 143476945 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA * * * 143476992 ATGTGATGAATGCGAGCATGC--ATGTGTGATAAGGCCGAATGGCCA 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA * * * 143477037 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA 143477084 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA * * 143477131 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA * * * * * 143477178 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA 1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA 143477225 ATGTGA 1 ATGTGA 143477231 AATATATATA Statistics Matches: 212, Mismatches: 25, Indels: 4 0.88 0.10 0.02 Matches are distributed among these distances: 45 40 0.19 47 172 0.81 ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27 Consensus pattern (47 bp): ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA Found at i:143477186 original size:25 final size:25 Alignment explanation
Indices: 143477111--143477186 Score: 63 Period size: 23 Copynumber: 3.2 Consensus size: 25 143477101 ATGCATATAT 143477111 GTGATAAGGCCGAATGGCCAATGTG 1 GTGATAAGGCCGAATGGCCAATGTG * * * * 143477136 ATGA-ATGTG-AGCAT-G-CATATGT- 1 GTGATAAG-GCCGAATGGCCA-ATGTG 143477158 GTGATAAGGCCGAATGGCCAATGTG 1 GTGATAAGGCCGAATGGCCAATGTG 143477183 GTGA 1 GTGA 143477187 ATATGAACAT Statistics Matches: 36, Mismatches: 8, Indels: 14 0.62 0.14 0.24 Matches are distributed among these distances: 22 6 0.17 23 10 0.28 24 10 0.28 25 10 0.28 ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24 Consensus pattern (25 bp): GTGATAAGGCCGAATGGCCAATGTG Found at i:143477218 original size:141 final size:139 Alignment explanation
Indices: 143476944--143477230 Score: 484 Period size: 141 Copynumber: 2.1 Consensus size: 139 143476934 TTTAGGATTT ** * 143476944 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAGC 1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAGC * 143477009 ATGCATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGC 66 ATGCATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAGC 143477074 CGAATGGCC 131 CGAATGGCC * 143477083 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC 1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAGC * 143477148 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA 66 ATGC--ATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAA * 143477213 GCCGAATGGTC 129 GCCGAATGGCC * 143477224 AATGTGA 1 TATGTGA 143477231 AATATATATA Statistics Matches: 138, Mismatches: 8, Indels: 2 0.93 0.05 0.01 Matches are distributed among these distances: 139 65 0.47 141 73 0.53 ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27 Consensus pattern (139 bp): TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAGC ATGCATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAAGC CGAATGGCC Found at i:143477281 original size:94 final size:91 Alignment explanation
Indices: 143476967--143477286 Score: 315 Period size: 94 Copynumber: 3.4 Consensus size: 91 143476957 TGAATGTGTA * * ** * * * 143476967 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAGCATGC--ATGTGTGATAAGGCCGA 1 TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCCGA * * 143477030 ATGGCCAATGTGGTGAATATGAACATG 65 ATGGCCAATGTGATGAATATGAGCATG * * * 143477057 CATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATAAGGCC 1 --TATATGTGGTAAGGCCGAATGGCCTATGTG-TGAATATGAACATGCATATATGTGATAAAGCC * 143477122 GAATGGCCAATGTGATGAATGTGAGCATG 63 GAATGGCCAATGTGATGAATATGAGCATG * * * 143477151 CATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCC 1 TATATGTG-G-TAAGGCCGAATGGCCTATGT-GTGAATATGAACATGCATATATGTGATAAAGCC * * * 143477216 GAATGGTCAATGTGAAATATATATATGAGATATG 63 GAATGGCCAATGTG--AT-GA-ATATGAG-CATG * 143477250 TATATGTGGTAAAGCCGAATGG-CTA-GTGTGAAATATG 1 TATATGTGGTAAGGCCGAATGGCCTATGTGTG-AATATG 143477287 TAGGCGATGT Statistics Matches: 197, Mismatches: 20, Indels: 19 0.83 0.08 0.08 Matches are distributed among these distances: 92 50 0.25 94 104 0.53 95 9 0.05 96 4 0.02 97 13 0.07 98 7 0.04 99 10 0.05 ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27 Consensus pattern (91 bp): TATATGTGGTAAGGCCGAATGGCCTATGTGTGAATATGAACATGCATATATGTGATAAAGCCGAA TGGCCAATGTGATGAATATGAGCATG Found at i:143477579 original size:37 final size:37 Alignment explanation
Indices: 143477435--143477578 Score: 209 Period size: 37 Copynumber: 3.9 Consensus size: 37 143477425 GGAAATATAT * * 143477435 TCCGGGTGAGACCCGATGACTATGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * * 143477472 T-CGGGTAAGACCCGATGACAACGTGTGGGGAGTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * 143477508 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 143477545 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT 143477579 TCGTCTGAGC Statistics Matches: 95, Mismatches: 11, Indels: 2 0.88 0.10 0.02 Matches are distributed among these distances: 36 31 0.33 37 64 0.67 ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:143481958 original size:33 final size:33 Alignment explanation
Indices: 143481921--143481988 Score: 127 Period size: 33 Copynumber: 2.1 Consensus size: 33 143481911 TATCAAAACA 143481921 ACCACATAAGTCACATAATAATGCCGAACACTT 1 ACCACATAAGTCACATAATAATGCCGAACACTT * 143481954 ACCACATAAGTCACATAATAATGCTGAACACTT 1 ACCACATAAGTCACATAATAATGCCGAACACTT 143481987 AC 1 AC 143481989 TTATGCTAAT Statistics Matches: 34, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 33 34 1.00 ACGTcount: A:0.43, C:0.26, G:0.09, T:0.22 Consensus pattern (33 bp): ACCACATAAGTCACATAATAATGCCGAACACTT Found at i:143485594 original size:14 final size:14 Alignment explanation
Indices: 143485575--143485601 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 143485565 GAAGTTACAC 143485575 AGGCTTTGGGTATG 1 AGGCTTTGGGTATG 143485589 AGGCTTTGGGTAT 1 AGGCTTTGGGTAT 143485602 AATGTTGGAC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.15, C:0.07, G:0.41, T:0.37 Consensus pattern (14 bp): AGGCTTTGGGTATG Found at i:143487489 original size:40 final size:40 Alignment explanation
Indices: 143487362--143487491 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 40 143487352 ATGCTGGAAA * * 143487362 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG * * ** 143487402 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG * 143487442 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG 143487482 TTATATCCGG 1 TTATATCCGG 143487492 TTGTATTCCG Statistics Matches: 76, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 39 4 0.05 40 72 0.95 ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG Found at i:143495535 original size:40 final size:40 Alignment explanation
Indices: 143495408--143495537 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 40 143495398 ATGCTGGAAA * * 143495408 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG * * ** 143495448 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG * 143495488 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG 143495528 TTATATCCGG 1 TTATATCCGG 143495538 TTGTATTCCG Statistics Matches: 76, Mismatches: 12, Indels: 4 0.83 0.13 0.04 Matches are distributed among these distances: 39 4 0.05 40 72 0.95 ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG Found at i:143497848 original size:35 final size:36 Alignment explanation
Indices: 143497792--143497863 Score: 128 Period size: 35 Copynumber: 2.0 Consensus size: 36 143497782 TCCATAAGTA * 143497792 TGATTTATGCTTATTGTATGGTAGGTAAGATTTGTG 1 TGATTTATGCTTATTGCATGGTAGGTAAGATTTGTG 143497828 TGATTTATGCTTA-TGCATGGTAGGTAAGATTTGTG 1 TGATTTATGCTTATTGCATGGTAGGTAAGATTTGTG 143497863 T 1 T 143497864 TTTGGATATA Statistics Matches: 35, Mismatches: 1, Indels: 1 0.95 0.03 0.03 Matches are distributed among these distances: 35 22 0.63 36 13 0.37 ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46 Consensus pattern (36 bp): TGATTTATGCTTATTGCATGGTAGGTAAGATTTGTG Found at i:143498721 original size:40 final size:40 Alignment explanation
Indices: 143498638--143498790 Score: 143 Period size: 40 Copynumber: 3.8 Consensus size: 40 143498628 TTGAATGATG * * 143498638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA * ** 143498678 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA * ** 143498718 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA * * * 143498759 T-CGGGCTATGTCCCGAAGGCTTTTGAGCGAGT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT 143498791 CGTTATATCC Statistics Matches: 94, Mismatches: 14, Indels: 11 0.79 0.12 0.09 Matches are distributed among these distances: 39 2 0.02 40 80 0.85 41 12 0.13 ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA Found at i:143507483 original size:47 final size:48 Alignment explanation
Indices: 143507408--143507550 Score: 209 Period size: 47 Copynumber: 3.0 Consensus size: 48 143507398 GCTTTATCAT * * 143507408 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA * 143507457 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA * * 143507504 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT 143507551 GCACTTCCTC Statistics Matches: 87, Mismatches: 5, Indels: 5 0.90 0.05 0.05 Matches are distributed among these distances: 47 45 0.52 48 30 0.34 49 12 0.14 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29 Consensus pattern (48 bp): ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA Found at i:143507508 original size:71 final size:72 Alignment explanation
Indices: 143507408--143507549 Score: 216 Period size: 71 Copynumber: 2.0 Consensus size: 72 143507398 GCTTTATCAT * * 143507408 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG 1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG 143507473 CCCTTTA 66 CCCTTTA * * * 143507480 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAA 1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAA 143507543 GCCCTTT 65 GCCCTTT 143507550 TGCACTTCCT Statistics Matches: 64, Mismatches: 5, Indels: 3 0.89 0.07 0.04 Matches are distributed among these distances: 71 52 0.81 72 12 0.19 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Consensus pattern (72 bp): ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAG CCCTTTA Found at i:143507551 original size:24 final size:24 Alignment explanation
Indices: 143507408--143507550 Score: 209 Period size: 24 Copynumber: 6.0 Consensus size: 24 143507398 GCTTTATCAT * 143507408 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTA * 143507433 ATAACTGGGGCAAAAGCCCTTTTA 1 ATAACTGGGGCATAAGCCCTTTTA 143507457 ATAACTGGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA * 143507480 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA * 143507504 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA * 143507528 ATAACTAGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 143507551 GCACTTCCTC Statistics Matches: 111, Mismatches: 5, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 23 23 0.21 24 76 0.68 25 12 0.11 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTA Found at i:143507624 original size:20 final size:20 Alignment explanation
Indices: 143507596--143507666 Score: 115 Period size: 20 Copynumber: 3.5 Consensus size: 20 143507586 GCATTTATGA * 143507596 ACATCTCATGTGCATATCAT 1 ACATATCATGTGCATATCAT 143507616 ACATATCATGTGCATATCAT 1 ACATATCATGTGCATATCAT * * 143507636 ATATGTCATGTGCATATCAT 1 ACATATCATGTGCATATCAT 143507656 ACATATCATGT 1 ACATATCATGT 143507667 TTATCAAGAT Statistics Matches: 46, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 20 46 1.00 ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37 Consensus pattern (20 bp): ACATATCATGTGCATATCAT Found at i:143507631 original size:11 final size:11 Alignment explanation
Indices: 143507601--143507655 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 143507591 TATGAACATC 143507601 TCATGTGCATA 1 TCATGTGCATA * 143507612 TCA--TACATA 1 TCATGTGCATA 143507621 TCATGTGCATA 1 TCATGTGCATA * * 143507632 TCATAT--ATG 1 TCATGTGCATA 143507641 TCATGTGCATA 1 TCATGTGCATA 143507652 TCAT 1 TCAT 143507656 ACATATCATG Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38 Consensus pattern (11 bp): TCATGTGCATA Found at i:143509311 original size:66 final size:68 Alignment explanation
Indices: 143509235--143509421 Score: 281 Period size: 71 Copynumber: 2.7 Consensus size: 68 143509225 TAGTACCACT * 143509235 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT 1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT 143509297 CACG 65 CACG 143509301 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA 1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA 143509366 ATCACG 63 ATCACG 143509372 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG 1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG 143509422 GATACATCTC Statistics Matches: 114, Mismatches: 1, Indels: 7 0.93 0.01 0.06 Matches are distributed among these distances: 66 13 0.11 67 6 0.05 68 1 0.01 69 1 0.01 71 93 0.82 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35 Consensus pattern (68 bp): CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC ACG Found at i:143509346 original size:71 final size:71 Alignment explanation
Indices: 143509258--143509421 Score: 328 Period size: 71 Copynumber: 2.3 Consensus size: 71 143509248 CGATTTGTCT 143509258 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 143509323 CTTTCA 66 CTTTCA 143509329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 143509394 CTTTCA 66 CTTTCA 143509400 CGTAGCTCTCTTGTCTACATGG 1 CGTAGCTCTCTTGTCTACATGG 143509422 GATACATCTC Statistics Matches: 93, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 71 93 1.00 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35 Consensus pattern (71 bp): CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT CTTTCA Found at i:143509459 original size:71 final size:70 Alignment explanation
Indices: 143509258--143509455 Score: 276 Period size: 71 Copynumber: 2.8 Consensus size: 70 143509248 CGATTTGTCT * * * 143509258 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT 143509323 CTTTCA 65 CTTTCA * * * 143509329 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT 143509394 CTTTCA 65 CTTTCA * * 143509400 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC 1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC 143509456 TACAGGGTGT Statistics Matches: 121, Mismatches: 5, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 68 23 0.19 69 1 0.01 70 1 0.01 71 96 0.79 ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34 Consensus pattern (70 bp): CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC TTTCA Found at i:143516879 original size:66 final size:68 Alignment explanation
Indices: 143516803--143516989 Score: 281 Period size: 71 Copynumber: 2.7 Consensus size: 68 143516793 TAGTACCACT * 143516803 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT 1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT 143516865 CACG 65 CACG 143516869 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA 1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA 143516934 ATCACG 63 ATCACG 143516940 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG 1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG 143516990 GATACATCTC Statistics Matches: 114, Mismatches: 1, Indels: 7 0.93 0.01 0.06 Matches are distributed among these distances: 66 13 0.11 67 6 0.05 68 1 0.01 69 1 0.01 71 93 0.82 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35 Consensus pattern (68 bp): CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC ACG Found at i:143516914 original size:71 final size:71 Alignment explanation
Indices: 143516826--143516989 Score: 328 Period size: 71 Copynumber: 2.3 Consensus size: 71 143516816 CGATTTGTCT 143516826 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 143516891 CTTTCA 66 CTTTCA 143516897 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 143516962 CTTTCA 66 CTTTCA 143516968 CGTAGCTCTCTTGTCTACATGG 1 CGTAGCTCTCTTGTCTACATGG 143516990 GATACATCTC Statistics Matches: 93, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 71 93 1.00 ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35 Consensus pattern (71 bp): CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT CTTTCA Found at i:143517027 original size:71 final size:70 Alignment explanation
Indices: 143516826--143517023 Score: 276 Period size: 71 Copynumber: 2.8 Consensus size: 70 143516816 CGATTTGTCT * * * 143516826 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT 143516891 CTTTCA 65 CTTTCA * * * 143516897 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT 1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT 143516962 CTTTCA 65 CTTTCA * * 143516968 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC 1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC 143517024 TACAGGGTGT Statistics Matches: 121, Mismatches: 5, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 68 23 0.19 69 1 0.01 70 1 0.01 71 96 0.79 ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34 Consensus pattern (70 bp): CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC TTTCA Found at i:143527737 original size:27 final size:26 Alignment explanation
Indices: 143527689--143527748 Score: 75 Period size: 27 Copynumber: 2.3 Consensus size: 26 143527679 GCGAGGCTGC * 143527689 CAGATATTGTGACGAAGTCACCAGATA 1 CAGATATTGTGACGAAGCCACCAGA-A * * * 143527716 CAGATATTGTGGCTAGGCCACCAGAA 1 CAGATATTGTGACGAAGCCACCAGAA 143527742 CAGATAT 1 CAGATAT 143527749 ATATATATAT Statistics Matches: 29, Mismatches: 4, Indels: 1 0.85 0.12 0.03 Matches are distributed among these distances: 26 8 0.28 27 21 0.72 ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAGAA Found at i:143527752 original size:2 final size:2 Alignment explanation
Indices: 143527745--143527780 Score: 72 Period size: 2 Copynumber: 18.0 Consensus size: 2 143527735 ACCAGAACAG 143527745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 143527781 GTGGCAAAGC Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 34 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:143528950 original size:27 final size:27 Alignment explanation
Indices: 143528851--143528999 Score: 136 Period size: 27 Copynumber: 5.4 Consensus size: 27 143528841 ACCCCGATTT * 143528851 GTAAAATGATCGTAATACCCCTGTAGG 1 GTAAAATGACCGTAATACCCCTGTAGG * * 143528878 ATAAAATGACCGTAATACCCCTATAGG 1 GTAAAATGACCGTAATACCCCTGTAGG ** 143528905 GTAAAATGACTATAATACCCCTGTAGG 1 GTAAAATGACCGTAATACCCCTGTAGG ** * * * 143528932 GTAAAACAACCGTATTACCCCTTCCTTCAAG 1 GTAAAATGACCGTAATACCCC-T--GT-AGG * * ** 143528963 GCAAAATGATCGTAATACCCCTGTATT 1 GTAAAATGACCGTAATACCCCTGTAGG 143528990 GTAAAATGAC 1 GTAAAATGAC 143529000 AATTATGTCG Statistics Matches: 94, Mismatches: 24, Indels: 8 0.75 0.19 0.06 Matches are distributed among these distances: 27 72 0.77 28 2 0.02 30 2 0.02 31 18 0.19 ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26 Consensus pattern (27 bp): GTAAAATGACCGTAATACCCCTGTAGG Found at i:143530972 original size:40 final size:40 Alignment explanation
Indices: 143530917--143531056 Score: 178 Period size: 40 Copynumber: 3.5 Consensus size: 40 143530907 CATTTGAATG 143530917 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * * 143530957 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * * * * * * 143530997 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 143531037 ATAT-C-GGCTAA-ATCCCGAAG 1 ATATCCGGGCTAAGA-CCCGAAG 143531057 AAACTTGGGT Statistics Matches: 87, Mismatches: 12, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 37 1 0.01 38 12 0.14 39 1 0.01 40 73 0.84 ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT Found at i:143534909 original size:15 final size:15 Alignment explanation
Indices: 143534889--143534919 Score: 53 Period size: 15 Copynumber: 2.1 Consensus size: 15 143534879 GGTTAGCTTC 143534889 TTGGGTCATGTGGTA 1 TTGGGTCATGTGGTA * 143534904 TTGGGTCGTGTGGTA 1 TTGGGTCATGTGGTA 143534919 T 1 T 143534920 CTGCATGGGT Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.10, C:0.06, G:0.42, T:0.42 Consensus pattern (15 bp): TTGGGTCATGTGGTA Found at i:143538814 original size:40 final size:40 Alignment explanation
Indices: 143538759--143538939 Score: 276 Period size: 40 Copynumber: 4.5 Consensus size: 40 143538749 CATTTGAATG 143538759 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 143538799 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * 143538839 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT * * * * * * 143538879 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT 143538919 ATATCC-GGCTAA-ATCCCGAAG 1 ATATCCGGGCTAAGA-CCCGAAG 143538940 AAACTTGGGT Statistics Matches: 130, Mismatches: 10, Indels: 3 0.91 0.07 0.02 Matches are distributed among these distances: 38 1 0.01 39 12 0.09 40 117 0.90 ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT Found at i:143540486 original size:33 final size:33 Alignment explanation
Indices: 143540438--143540536 Score: 128 Period size: 33 Copynumber: 3.0 Consensus size: 33 143540428 TTAGGCCCAC * * 143540438 ACTGCTACTGTATAGGGCTAGGGCCCAGATTGT 1 ACTGATACTGTATAGGGCTAGGGCCCAGACTGT * 143540471 ACTGATACTGAATAGGGCTTA-GGCCCAGACTGT 1 ACTGATACTGTATAGGGC-TAGGGCCCAGACTGT * * * 143540504 ATTGATACTGTATAGGGCTTGGGCCCGGACTGT 1 ACTGATACTGTATAGGGCTAGGGCCCAGACTGT 143540537 GTTATTCACT Statistics Matches: 57, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 32 1 0.02 33 54 0.95 34 2 0.04 ACGTcount: A:0.22, C:0.20, G:0.30, T:0.27 Consensus pattern (33 bp): ACTGATACTGTATAGGGCTAGGGCCCAGACTGT Found at i:143542833 original size:12 final size:12 Alignment explanation
Indices: 143542816--143542840 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 143542806 AGTAGTCTCT 143542816 TATTTTGGTTTC 1 TATTTTGGTTTC 143542828 TATTTTGGTTTC 1 TATTTTGGTTTC 143542840 T 1 T 143542841 GGCATTGTCG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68 Consensus pattern (12 bp): TATTTTGGTTTC Found at i:143545113 original size:27 final size:27 Alignment explanation
Indices: 143545095--143545163 Score: 102 Period size: 27 Copynumber: 2.5 Consensus size: 27 143545085 ATAGTGAGTC 143545095 CGCACACTTAGTGCTATATAATCAGCT 1 CGCACACTTAGTGCTATATAATCAGCT ** 143545122 CGCACACTTAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATC-AGCT * 143545150 CGTACACTTAGTGC 1 CGCACACTTAGTGC 143545164 CAATCTTGTC Statistics Matches: 38, Mismatches: 3, Indels: 1 0.90 0.07 0.02 Matches are distributed among these distances: 27 23 0.61 28 15 0.39 ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAGCT Found at i:143545641 original size:2 final size:2 Alignment explanation
Indices: 143545634--143545659 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 143545624 TAATGGCCGA 143545634 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 143545660 GTACAATGTC Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:143552987 original size:28 final size:27 Alignment explanation
Indices: 143552921--143552990 Score: 113 Period size: 27 Copynumber: 2.6 Consensus size: 27 143552911 ATAGTGAGTC * 143552921 CGCACACTTAGTGCTATATAATCAGCT 1 CGCACACTTAGTGCTATATAATCAACT * 143552948 CGCACACTTAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATC-AACT 143552976 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 143552991 GTACAAATTT Statistics Matches: 40, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 23 0.57 28 17 0.43 ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30 Consensus pattern (27 bp): CGCACACTTAGTGCTATATAATCAACT Found at i:143553500 original size:2 final size:2 Alignment explanation
Indices: 143553493--143553524 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 143553483 TAATGGCCGA 143553493 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 143553525 GTACAATGTC Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:143567269 original size:25 final size:25 Alignment explanation
Indices: 143567241--143567288 Score: 71 Period size: 25 Copynumber: 1.9 Consensus size: 25 143567231 TAGATATGGT * 143567241 ATAATAATG-GAAATATAAATATAAG 1 ATAAT-ATGAGAAATAAAAATATAAG 143567266 ATAATATGAGAAATAAAAATATA 1 ATAATATGAGAAATAAAAATATA 143567289 GAAGTGACTT Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 24 3 0.14 25 18 0.86 ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27 Consensus pattern (25 bp): ATAATATGAGAAATAAAAATATAAG Found at i:143570695 original size:29 final size:27 Alignment explanation
Indices: 143570661--143570763 Score: 89 Period size: 29 Copynumber: 3.6 Consensus size: 27 143570651 TACTCAATCA * 143570661 CGCACACTTAGTGCCATGTGATTCAAGCC 1 CGCACACTTAGTGCCAT-T-ATTCAAGCT * * * 143570690 CGCACACATAGTGCCATATAGTCCAAACT 1 CGCACACTTAGTGCCAT-TA-TTCAAGCT * * 143570719 CACACACTTAGTGCCATACATTACAAGCT 1 CGCACACTTAGTGCCAT-TATT-CAAGCT * 143570748 CGCACACTCAGTGCCA 1 CGCACACTTAGTGCCA 143570764 ATCTCGTCAC Statistics Matches: 60, Mismatches: 12, Indels: 4 0.79 0.16 0.05 Matches are distributed among these distances: 28 2 0.03 29 58 0.97 ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21 Consensus pattern (27 bp): CGCACACTTAGTGCCATTATTCAAGCT Found at i:143573566 original size:220 final size:220 Alignment explanation
Indices: 143573184--143573650 Score: 765 Period size: 220 Copynumber: 2.1 Consensus size: 220 143573174 TGGTTTCGAC 143573184 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT 1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT * * * 143573249 CATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGTTATGTCTTCGATCTGCTC 66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTA * 143573314 TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACAGAGATGCCA 131 TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA 143573379 AATAATCTTAGA-TCTGCTTCAGTGT 196 AATAATCTTAGATTC-GCTTCAGTGT ** * 143573404 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGTTCCTTGTAAACGCAAGGATGCCCAAT 1 AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT * * 143573469 CATCTTGAATCTACTTCTATGTGAAAATATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTA 66 CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTA * ** 143573534 TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGATATGTTA 131 TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA * * 143573599 AATCATCTTGGATTCGCTTCAGTGT 196 AATAATCTTAGATTCGCTTCAGTGT * * * 143573624 AAACACCTGAAGGTCAAATCTGCTATG 1 AAACACGTGAAAGCCAAATCTGCTATG 143573651 CTTTAGCCTG Statistics Matches: 229, Mismatches: 17, Indels: 2 0.92 0.07 0.01 Matches are distributed among these distances: 220 227 0.99 221 2 0.01 ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32 Consensus pattern (220 bp): AAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAAT CATCTTGAATCTACTTCAATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTA TCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCA AATAATCTTAGATTCGCTTCAGTGT Found at i:143575469 original size:49 final size:49 Alignment explanation
Indices: 143575405--143575644 Score: 290 Period size: 49 Copynumber: 4.9 Consensus size: 49 143575395 ACTGTTGCTG * * * 143575405 TCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA 1 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA * ** 143575454 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA 1 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTA * * * * 143575504 TCTGATACAC-TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA 1 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTA * * 143575554 TCAGGT--ACGATAGTAG-CTGCACTTAGTACTACACATGCGACCAATTA 1 TCCGGTACACG-TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA * * 143575601 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC 1 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC 143575645 TCACAATAGC Statistics Matches: 164, Mismatches: 19, Indels: 16 0.82 0.10 0.08 Matches are distributed among these distances: 47 8 0.05 48 11 0.07 49 122 0.74 50 23 0.14 ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25 Consensus pattern (49 bp): TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA Found at i:143578388 original size:15 final size:15 Alignment explanation
Indices: 143578359--143578397 Score: 60 Period size: 15 Copynumber: 2.5 Consensus size: 15 143578349 AACAGAGAAG 143578359 CCAAGAATAAAGAAAT 1 CCAAG-ATAAAGAAAT 143578375 CCAAGATAAAGAAAT 1 CCAAGATAAAGAAAT * 143578390 CCATGATA 1 CCAAGATA 143578398 CGAGAATCCA Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 15 17 0.77 16 5 0.23 ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15 Consensus pattern (15 bp): CCAAGATAAAGAAAT Found at i:143581159 original size:49 final size:49 Alignment explanation
Indices: 143581095--143581323 Score: 284 Period size: 49 Copynumber: 4.7 Consensus size: 49 143581085 CTGGTACGCA * 143581095 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG * ** ** 143581144 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTATACACG 1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG * * * * * 143581193 TAGTAG-CTGCACTTAGTACTACA-ACGTGATCGAAGTTATCAGGTACGCA 1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG * * 143581242 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG * 143581291 TAGTAGCCTGCACTTAGTACTACACACGTGACC 1 TAGTAGCCTGCACTTAGTACTACACACGCGACC 143581324 TCACAATAGC Statistics Matches: 152, Mismatches: 22, Indels: 12 0.82 0.12 0.06 Matches are distributed among these distances: 47 8 0.05 48 20 0.13 49 96 0.63 50 24 0.16 51 4 0.03 ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25 Consensus pattern (49 bp): TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG Found at i:143582206 original size:14 final size:14 Alignment explanation
Indices: 143582187--143582216 Score: 60 Period size: 14 Copynumber: 2.1 Consensus size: 14 143582177 TAAAACCGAG 143582187 TAGCACAAGTTGTC 1 TAGCACAAGTTGTC 143582201 TAGCACAAGTTGTC 1 TAGCACAAGTTGTC 143582215 TA 1 TA 143582217 ACATAATTTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30 Consensus pattern (14 bp): TAGCACAAGTTGTC Found at i:143585606 original size:39 final size:39 Alignment explanation
Indices: 143585552--143585667 Score: 196 Period size: 39 Copynumber: 2.9 Consensus size: 39 143585542 TGTGAATGAA * 143585552 TGTGCGAATTGTGATATCCAGGCTAAGCCCGAAGGCAAT 1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 143585591 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 143585630 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA 1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA 143585668 TTTGAGCGGG Statistics Matches: 73, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 39 63 0.86 40 10 0.14 ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24 Consensus pattern (39 bp): TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:143596757 original size:17 final size:17 Alignment explanation
Indices: 143596735--143596767 Score: 50 Period size: 17 Copynumber: 1.9 Consensus size: 17 143596725 GATATGATAC 143596735 TAAAAT-TATTAAAAAAT 1 TAAAATATA-TAAAAAAT 143596752 TAAAATATATAAAAAA 1 TAAAATATATAAAAAA 143596768 AATCCGAGAA Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 17 13 0.87 18 2 0.13 ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30 Consensus pattern (17 bp): TAAAATATATAAAAAAT Found at i:143596768 original size:18 final size:17 Alignment explanation
Indices: 143596735--143596768 Score: 50 Period size: 18 Copynumber: 1.9 Consensus size: 17 143596725 GATATGATAC * 143596735 TAAAATTATTAAAAAAT 1 TAAAATTATAAAAAAAT 143596752 TAAAATATATAAAAAAA 1 TAAAAT-TATAAAAAAA 143596769 ATCCGAGAAA Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 6 0.40 18 9 0.60 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (17 bp): TAAAATTATAAAAAAAT Found at i:143597067 original size:23 final size:22 Alignment explanation
Indices: 143597024--143597081 Score: 64 Period size: 22 Copynumber: 2.6 Consensus size: 22 143597014 AAAAGGTATC * * 143597024 TACAAATTAAATC-TCTAAGAT 1 TACAAATCATATCTTCTAAGAT 143597045 TACAAAATCATATCTTCTAAGAT 1 TAC-AAATCATATCTTCTAAGAT * * 143597068 TGCATATCATATCT 1 TACAAATCATATCT 143597082 AAGATTGCAA Statistics Matches: 31, Mismatches: 4, Indels: 3 0.82 0.11 0.08 Matches are distributed among these distances: 21 3 0.10 22 18 0.58 23 10 0.32 ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36 Consensus pattern (22 bp): TACAAATCATATCTTCTAAGAT Found at i:143597084 original size:19 final size:19 Alignment explanation
Indices: 143597060--143597150 Score: 134 Period size: 19 Copynumber: 4.9 Consensus size: 19 143597050 AATCATATCT 143597060 TCTAAGATTGCATATCATA 1 TCTAAGATTGCATATCATA * 143597079 TCTAAGATTGCA-AGCATA 1 TCTAAGATTGCATATCATA * 143597097 TCTAAGAGTG--TATCATA 1 TCTAAGATTGCATATCATA 143597114 TCTAAGATTGCATATCATA 1 TCTAAGATTGCATATCATA * 143597133 TTTAAGATTGCATATCAT 1 TCTAAGATTGCATATCAT 143597151 TGAAGATTAT Statistics Matches: 64, Mismatches: 5, Indels: 6 0.85 0.07 0.08 Matches are distributed among these distances: 17 14 0.22 18 14 0.22 19 36 0.56 ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36 Consensus pattern (19 bp): TCTAAGATTGCATATCATA Found at i:143597113 original size:35 final size:36 Alignment explanation
Indices: 143597072--143597139 Score: 111 Period size: 35 Copynumber: 1.9 Consensus size: 36 143597062 TAAGATTGCA 143597072 TATCATATCTAAGATTGCA-AGCATATCTAAGAGTG 1 TATCATATCTAAGATTGCATAGCATATCTAAGAGTG * * 143597107 TATCATATCTAAGATTGCATATCATATTTAAGA 1 TATCATATCTAAGATTGCATAGCATATCTAAGA 143597140 TTGCATATCA Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 35 19 0.63 36 11 0.37 ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35 Consensus pattern (36 bp): TATCATATCTAAGATTGCATAGCATATCTAAGAGTG Found at i:143597158 original size:17 final size:18 Alignment explanation
Indices: 143597117--143597158 Score: 59 Period size: 19 Copynumber: 2.3 Consensus size: 18 143597107 TATCATATCT * 143597117 AAGATTGCATATCATATTT 1 AAGATTGCATATCA-ATTG 143597136 AAGATTGCATATC-ATTG 1 AAGATTGCATATCAATTG 143597153 AAGATT 1 AAGATT 143597159 ATATTTCCAT Statistics Matches: 22, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 17 9 0.41 19 13 0.59 ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38 Consensus pattern (18 bp): AAGATTGCATATCAATTG Found at i:143597307 original size:21 final size:20 Alignment explanation
Indices: 143597269--143597308 Score: 53 Period size: 21 Copynumber: 1.9 Consensus size: 20 143597259 TTGGACTTTG ** 143597269 TTTTTTTTTTGGGTTTATTA 1 TTTTTTTTTTGGACTTATTA 143597289 TTTTTGTTTTTGGACTTATT 1 TTTTT-TTTTTGGACTTATT 143597309 TCTGGGCCCG Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 20 5 0.29 21 12 0.71 ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72 Consensus pattern (20 bp): TTTTTTTTTTGGACTTATTA Found at i:143599789 original size:40 final size:40 Alignment explanation
Indices: 143599681--143599850 Score: 225 Period size: 40 Copynumber: 4.2 Consensus size: 40 143599671 CGGGATTTAA * * * * * 143599681 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC * * * * * * 143599721 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC 1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143599761 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143599801 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143599841 CCGGATATAT 1 CCGGATATAT 143599851 TTTCAATGTT Statistics Matches: 113, Mismatches: 15, Indels: 4 0.86 0.11 0.03 Matches are distributed among these distances: 39 1 0.01 40 112 0.99 ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25 Consensus pattern (40 bp): CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC Found at i:143607883 original size:40 final size:40 Alignment explanation
Indices: 143607775--143607984 Score: 305 Period size: 40 Copynumber: 5.2 Consensus size: 40 143607765 CGGGATTTAA * * * * * 143607775 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC * * * * * * 143607815 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC 1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143607855 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143607895 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143607935 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC 143607975 CCGGATATAT 1 CCGGATATAT 143607985 TTCCAATGTT Statistics Matches: 153, Mismatches: 15, Indels: 4 0.89 0.09 0.02 Matches are distributed among these distances: 39 1 0.01 40 152 0.99 ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25 Consensus pattern (40 bp): CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC Found at i:143610095 original size:50 final size:48 Alignment explanation
Indices: 143609969--143610116 Score: 230 Period size: 47 Copynumber: 3.1 Consensus size: 48 143609959 CCCTTCGGGA * * 143609969 CTTATCACATT-TATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC * 143610016 CTTATCAC--TATATACACCTTCACATTCATCACATCGGGCCATTAGGC 1 CTTATCACATTATATACACTTTCACATTCATCACATC-GGCCATTAGGC 143610063 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC 143610112 CTTAT 1 CTTAT 143610117 GTAACACCCC Statistics Matches: 92, Mismatches: 4, Indels: 8 0.88 0.04 0.08 Matches are distributed among these distances: 45 1 0.01 46 23 0.25 47 26 0.28 49 16 0.17 50 26 0.28 ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34 Consensus pattern (48 bp): CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:143611637 original size:80 final size:80 Alignment explanation
Indices: 143611553--143611701 Score: 183 Period size: 80 Copynumber: 1.9 Consensus size: 80 143611543 TATGGTAACC * * * * 143611553 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG 1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA 143611617 CCCGGATAGAATGACT 65 CCCGGATAGAATGACT * * * * * * * 143611633 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC 143611698 CCGG 66 CCGG 143611702 TTATAATTTC Statistics Matches: 57, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 79 1 0.02 80 56 0.98 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (80 bp): CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC CCGGATAGAATGACT Found at i:143611643 original size:40 final size:38 Alignment explanation
Indices: 143611594--143611701 Score: 128 Period size: 40 Copynumber: 2.7 Consensus size: 38 143611584 ATCACGATTT * 143611594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA * 143611634 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA * 143611674 GCACAATTGCCTTCGGGTCTTAACCCGG 1 GCACAA-TGCCTTCGGGTCTTAGCCCGG 143611702 TTATAATTTC Statistics Matches: 61, Mismatches: 4, Indels: 6 0.86 0.06 0.08 Matches are distributed among these distances: 38 1 0.02 39 4 0.07 40 56 0.92 ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23 Consensus pattern (38 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA Found at i:143619750 original size:80 final size:80 Alignment explanation
Indices: 143619666--143619814 Score: 183 Period size: 80 Copynumber: 1.9 Consensus size: 80 143619656 TATGGTAACC * * * * 143619666 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG 1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA 143619730 CCCGGATAGAATGACT 65 CCCGGATAGAATGACT * * * * * * * 143619746 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC 143619811 CCGG 66 CCGG 143619815 TTATAATTTC Statistics Matches: 57, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 79 1 0.02 80 56 0.98 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (80 bp): CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC CCGGATAGAATGACT Found at i:143619756 original size:40 final size:38 Alignment explanation
Indices: 143619707--143619814 Score: 128 Period size: 40 Copynumber: 2.7 Consensus size: 38 143619697 ATCACGATTT * 143619707 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA * 143619747 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA * 143619787 GCACAATTGCCTTCGGGTCTTAACCCGG 1 GCACAA-TGCCTTCGGGTCTTAGCCCGG 143619815 TTATAATTTC Statistics Matches: 61, Mismatches: 4, Indels: 6 0.86 0.06 0.08 Matches are distributed among these distances: 38 1 0.02 39 4 0.07 40 56 0.92 ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23 Consensus pattern (38 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA Found at i:143627866 original size:80 final size:80 Alignment explanation
Indices: 143627782--143627930 Score: 183 Period size: 80 Copynumber: 1.9 Consensus size: 80 143627772 TATGGTAACC * * * * 143627782 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG 1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA 143627846 CCCGGATAGAATGACT 65 CCCGGATAGAATGACT * * * * * * * 143627862 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC 143627927 CCGG 66 CCGG 143627931 TTATAATTTC Statistics Matches: 57, Mismatches: 11, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 79 1 0.02 80 56 0.98 ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22 Consensus pattern (80 bp): CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC CCGGATAGAATGACT Found at i:143627872 original size:40 final size:38 Alignment explanation
Indices: 143627823--143627930 Score: 128 Period size: 40 Copynumber: 2.7 Consensus size: 38 143627813 ATCACGATTT * 143627823 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA * 143627863 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA * 143627903 GCACAATTGCCTTCGGGTCTTAACCCGG 1 GCACAA-TGCCTTCGGGTCTTAGCCCGG 143627931 TTATAATTTC Statistics Matches: 61, Mismatches: 4, Indels: 6 0.86 0.06 0.08 Matches are distributed among these distances: 38 1 0.02 39 4 0.07 40 56 0.92 ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23 Consensus pattern (38 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA Found at i:143629727 original size:47 final size:47 Alignment explanation
Indices: 143629647--143629776 Score: 206 Period size: 49 Copynumber: 2.7 Consensus size: 47 143629637 GGCTGTCACA * 143629647 CCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGG 1 CCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGG 143629696 CCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG 1 CCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG * 143629743 CCTTATCACATATATATACACTTTCACATTCATC 1 CCTTATCAC--ATATATACACCTTCACATTCATC 143629777 GCGTAAAATC Statistics Matches: 77, Mismatches: 2, Indels: 4 0.93 0.02 0.05 Matches are distributed among these distances: 47 35 0.45 48 1 0.01 49 41 0.53 ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32 Consensus pattern (47 bp): CCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGG Found at i:143629758 original size:49 final size:49 Alignment explanation
Indices: 143629647--143629776 Score: 219 Period size: 47 Copynumber: 2.7 Consensus size: 49 143629637 GGCTGTCACA * * 143629647 CCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGG 1 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG * 143629696 CCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGG 1 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG 143629743 CCTTATCACATATATATACACTTTCACATTCATC 1 CCTTATCACATATATATACACTTTCACATTCATC 143629777 GCGTAAAATC Statistics Matches: 75, Mismatches: 4, Indels: 4 0.90 0.05 0.05 Matches are distributed among these distances: 47 44 0.59 49 31 0.41 ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32 Consensus pattern (49 bp): CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG Found at i:143633731 original size:43 final size:43 Alignment explanation
Indices: 143633394--143633724 Score: 599 Period size: 43 Copynumber: 7.7 Consensus size: 43 143633384 CACTGGCATT * * 143633394 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGTACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143633437 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143633480 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 143633523 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143633566 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143633609 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 143633652 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143633695 AAGCCTGCTAGGCACGAAGGCCTGAATACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACA 143633725 CGTCACCAGC Statistics Matches: 279, Mismatches: 9, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 43 279 1.00 ACGTcount: A:0.32, C:0.31, G:0.23, T:0.13 Consensus pattern (43 bp): AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA Found at i:143633873 original size:42 final size:40 Alignment explanation
Indices: 143633728--143633885 Score: 163 Period size: 40 Copynumber: 3.9 Consensus size: 40 143633718 GAATACACGT * * * * * * * 143633728 CACCAGCATGACTGCTCTTCGGGACCTGGTCCGGATACAT 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * * * 143633768 CACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGTAA 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * 143633808 CACCAGCACGAATGCTCTACGGGACTTAACCCGGATATATA 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA-A * * 143633849 TCGCCAGTACGAATGCTCTTCGGGACTTAGCCCGGAT 1 -CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT 143633886 CATCGTCGAG Statistics Matches: 97, Mismatches: 19, Indels: 2 0.82 0.16 0.02 Matches are distributed among these distances: 40 64 0.66 41 1 0.01 42 32 0.33 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23 Consensus pattern (40 bp): CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA Found at i:143640242 original size:96 final size:96 Alignment explanation
Indices: 143640119--143640390 Score: 426 Period size: 96 Copynumber: 2.8 Consensus size: 96 143640109 CCCTTCGGGA * * 143640119 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC 143640182 ACCTTCACATTCATCACATCGGCCATTAGGC 66 ACCTTCACATTCATCACATCGGCCATTAGGC * 143640213 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC * 143640278 ACACTTTCACATTCATCACATCGGCCATTCGGC 66 AC-C-TTCACATTCATCACATCGGCCATTAGGC * 143640311 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT * 143640374 ACACTTTCACATTCATC 64 ACACCTTCACATTCATC 143640391 GCGTAAAATC Statistics Matches: 165, Mismatches: 7, Indels: 10 0.91 0.04 0.05 Matches are distributed among these distances: 94 10 0.06 95 1 0.01 96 109 0.66 97 1 0.01 98 44 0.27 ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32 Consensus pattern (96 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC ACCTTCACATTCATCACATCGGCCATTAGGC Found at i:143640246 original size:49 final size:49 Alignment explanation
Indices: 143640119--143640390 Score: 439 Period size: 49 Copynumber: 5.7 Consensus size: 49 143640109 CCCTTCGGGA * * 143640119 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 143640166 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 143640213 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * * 143640262 CTTATCACATATACACACACTTTCACATTCATCACATCGGCCATTCGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 143640311 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 143640358 CTTATCACATATATATACACTTTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 143640391 GCGTAAAATC Statistics Matches: 207, Mismatches: 12, Indels: 10 0.90 0.05 0.04 Matches are distributed among these distances: 46 1 0.00 47 92 0.44 49 114 0.55 ACGTcount: A:0.29, C:0.31, G:0.07, T:0.32 Consensus pattern (49 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:143644343 original size:43 final size:43 Alignment explanation
Indices: 143644006--143644336 Score: 599 Period size: 43 Copynumber: 7.7 Consensus size: 43 143643996 CACTGGCATT * * 143644006 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGTACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143644049 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143644092 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 143644135 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143644178 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACTGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143644221 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 143644264 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA * 143644307 AAGCCTGCTAGGCACGAAGGCCTGAATACA 1 AAGCCTGCTAGGCACGAAGGCCCGAATACA 143644337 CGTCACCAGC Statistics Matches: 279, Mismatches: 9, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 43 279 1.00 ACGTcount: A:0.32, C:0.31, G:0.23, T:0.13 Consensus pattern (43 bp): AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA Found at i:143644485 original size:42 final size:40 Alignment explanation
Indices: 143644340--143644497 Score: 163 Period size: 40 Copynumber: 3.9 Consensus size: 40 143644330 GAATACACGT * * * * * * * 143644340 CACCAGCATGACTGCTCTTCGGGACCTGGTCCGGATACAT 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * * * 143644380 CACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGTAA 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA * * 143644420 CACCAGCACGAATGCTCTACGGGACTTAACCCGGATATATA 1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA-A * * 143644461 TCGCCAGTACGAATGCTCTTCGGGACTTAGCCCGGAT 1 -CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT 143644498 CATCGTCGAG Statistics Matches: 97, Mismatches: 19, Indels: 2 0.82 0.16 0.02 Matches are distributed among these distances: 40 64 0.66 41 1 0.01 42 32 0.33 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23 Consensus pattern (40 bp): CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA Found at i:143650857 original size:96 final size:96 Alignment explanation
Indices: 143650734--143651054 Score: 565 Period size: 96 Copynumber: 3.3 Consensus size: 96 143650724 CCCTTCGGGA * * 143650734 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC 143650797 ACCTTCACATTCATCACATCGGCCATTAGGC 66 ACCTTCACATTCATCACATCGGCCATTAGGC 143650828 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT * 143650893 ACACTTTCACATTCATCACATCGGCCATTAGGC 64 ACACCTTCACATTCATCACATCGGCCATTAGGC * * 143650926 CTTATCACATATACACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC 143650991 ACCTTCACATTCATCACATCGGCCATTAGGC 66 ACCTTCACATTCATCACATCGGCCATTAGGC 143651022 CTTATCACATATATATACACTTTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 143651055 GCGTAAAATC Statistics Matches: 215, Mismatches: 8, Indels: 6 0.94 0.03 0.03 Matches are distributed among these distances: 94 10 0.05 95 1 0.00 96 111 0.52 98 93 0.43 ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32 Consensus pattern (96 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC ACCTTCACATTCATCACATCGGCCATTAGGC Found at i:143650861 original size:49 final size:49 Alignment explanation
Indices: 143650734--143651054 Score: 546 Period size: 49 Copynumber: 6.7 Consensus size: 49 143650724 CCCTTCGGGA * * 143650734 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 143650781 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 143650828 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 143650877 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * * 143650926 CTTATCACATATACACACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC * 143650975 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 143651022 CTTATCACATATATATACACTTTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 143651055 GCGTAAAATC Statistics Matches: 258, Mismatches: 10, Indels: 10 0.93 0.04 0.04 Matches are distributed among these distances: 46 1 0.00 47 93 0.36 49 164 0.64 ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32 Consensus pattern (49 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC Found at i:143650998 original size:145 final size:144 Alignment explanation
Indices: 143650734--143651054 Score: 558 Period size: 145 Copynumber: 2.2 Consensus size: 144 143650724 CCCTTCGGGA * * * 143650734 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAC * 143650797 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA 66 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACCTTCACATTCATCA 143650862 CATCGGCCATTAGGC 130 CATCGGCCATTAGGC 143650877 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAC 1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAC 143650942 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACCTTCACATTCATC 66 AC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACCTTCACATTCATC 143651006 ACATCGGCCATTAGGC 129 ACATCGGCCATTAGGC 143651022 CTTATCACATATATATACACTTTCACATTCATC 1 CTTATCACATATATATACACTTTCACATTCATC 143651055 GCGTAAAATC Statistics Matches: 170, Mismatches: 4, Indels: 6 0.94 0.02 0.03 Matches are distributed among these distances: 143 10 0.06 144 1 0.01 145 122 0.72 146 1 0.01 147 36 0.21 ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32 Consensus pattern (144 bp): CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACAC ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACCTTCACATTCATCAC ATCGGCCATTAGGC Found at i:143653199 original size:39 final size:39 Alignment explanation
Indices: 143653118--143653358 Score: 428 Period size: 39 Copynumber: 6.2 Consensus size: 39 143653108 TATGGTAACC * * * 143653118 CGCACAAATGCCTTCGGGACTTAACCTGGATATCACAACT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT 143653158 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 143653197 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 143653236 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 143653275 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * * 143653314 AGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 143653353 CGCACA 1 CGCACA 143653359 TTCATACACA Statistics Matches: 195, Mismatches: 6, Indels: 1 0.97 0.03 0.00 Matches are distributed among these distances: 39 178 0.91 40 17 0.09 ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:143661166 original size:40 final size:40 Alignment explanation
Indices: 143661102--143661212 Score: 116 Period size: 40 Copynumber: 2.8 Consensus size: 40 143661092 GCTACTCGTT * * * * *** 143661102 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA * 143661142 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA 1 CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA * * 143661182 CAATTGCCTTCGGG-CTTAGCCGCGGATATCA 1 CAAATGCCTTCGGGACTTAACC-CGGATATCA 143661213 TCGCACTTGC Statistics Matches: 60, Mismatches: 10, Indels: 2 0.83 0.14 0.03 Matches are distributed among these distances: 39 6 0.10 40 54 0.90 ACGTcount: A:0.25, C:0.32, G:0.23, T:0.21 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAACCCGGATATCACAACCCGCA Found at i:143661270 original size:36 final size:37 Alignment explanation
Indices: 143661223--143661315 Score: 170 Period size: 38 Copynumber: 2.5 Consensus size: 37 143661213 TCGCACTTGC 143661223 CTTAGCCCGGATATCACAA-GCACAATTGCCTTCGGG 1 CTTAGCCCGGATATCACAACGCACAATTGCCTTCGGG 143661259 CTTAGCCCGGATATCACAACTGCACAATTGCCTTCGGG 1 CTTAGCCCGGATATCACAAC-GCACAATTGCCTTCGGG 143661297 CTTAGCCCGGATATCACAA 1 CTTAGCCCGGATATCACAA 143661316 TTCGCACATT Statistics Matches: 55, Mismatches: 0, Indels: 2 0.96 0.00 0.04 Matches are distributed among these distances: 36 19 0.35 38 36 0.65 ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23 Consensus pattern (37 bp): CTTAGCCCGGATATCACAACGCACAATTGCCTTCGGG Found at i:143663948 original size:40 final size:37 Alignment explanation
Indices: 143663843--143663950 Score: 137 Period size: 37 Copynumber: 2.8 Consensus size: 37 143663833 TATCACGATT 143663843 TGCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAAAC 1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATTAGAAAC ** 143663880 TGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC 1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGAT-TAGAAAC * 143663919 TAGCACAATTGCCTTCGGGTCTTAACCCGGAT 1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGAT 143663951 ATAATTTCCA Statistics Matches: 63, Mismatches: 4, Indels: 5 0.88 0.06 0.07 Matches are distributed among these distances: 37 29 0.46 39 8 0.13 40 26 0.41 ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24 Consensus pattern (37 bp): TGCACAATGCCTTCGGGTCTTAGCCCGGATTAGAAAC Found at i:143663969 original size:40 final size:40 Alignment explanation
Indices: 143663844--143663992 Score: 144 Period size: 40 Copynumber: 3.8 Consensus size: 40 143663834 ATCACGATTT * * * 143663844 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA--A-CT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA * * * 143663881 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA * *** 143663921 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA * * * 143663961 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 143663993 CATTCAATTT Statistics Matches: 91, Mismatches: 16, Indels: 7 0.80 0.14 0.06 Matches are distributed among these distances: 37 28 0.31 38 2 0.02 39 3 0.03 40 58 0.64 ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA Found at i:143669941 original size:40 final size:39 Alignment explanation
Indices: 143669896--143670025 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 143669886 CGGAATATAA 143669896 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 143669936 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 143669976 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 143670016 CCGGATATAA 1 CCGGATATAA 143670026 TTTCCAGCAT Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:143670040 original size:40 final size:40 Alignment explanation
Indices: 143669912--143670063 Score: 148 Period size: 40 Copynumber: 3.8 Consensus size: 40 143669902 ATAACCATGT * * * 143669912 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA * ** * * 143669952 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 143669992 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 143670032 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT 1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT 143670064 CATTCAATTT Statistics Matches: 91, Mismatches: 17, Indels: 8 0.78 0.15 0.07 Matches are distributed among these distances: 39 2 0.02 40 86 0.95 41 3 0.03 ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA Found at i:143670046 original size:80 final size:80 Alignment explanation
Indices: 143669912--143670061 Score: 198 Period size: 80 Copynumber: 1.9 Consensus size: 80 143669902 ATAACCATGT * 143669912 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC 143669976 CCGGATGTAGCCACTA 65 CCGGATGTAGCCACTA * * * * * 143669992 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG 143670055 CCCGGAT 64 CCCGGAT 143670062 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 6 0.84 0.08 0.08 Matches are distributed among these distances: 79 3 0.05 80 57 0.93 81 1 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC CGGATGTAGCCACTA Found at i:143674283 original size:93 final size:93 Alignment explanation
Indices: 143674171--143674342 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 143674161 CGCCCATAAG * * 143674171 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 143674236 ACGAGTTCGGATGCCTAGTTACATCTCA 66 ACGAGTTCGGATGCCTAGTTACATCTCA * 143674264 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 143674329 ACGAGTTCGGATGC 66 ACGAGTTCGGATGC 143674343 TCAACCATCC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21 Consensus pattern (93 bp): CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA ACGAGTTCGGATGCCTAGTTACATCTCA Found at i:143674339 original size:46 final size:46 Alignment explanation
Indices: 143674164--143674339 Score: 216 Period size: 46 Copynumber: 3.8 Consensus size: 46 143674154 TGTAACCCGC * * * 143674164 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * * 143674210 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT * 143674260 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * 143674303 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA 143674340 TGCTCAACCA Statistics Matches: 111, Mismatches: 10, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 2 0.02 46 63 0.57 47 29 0.26 48 2 0.02 49 2 0.02 50 3 0.03 51 2 0.02 ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20 Consensus pattern (46 bp): CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:143681889 original size:40 final size:40 Alignment explanation
Indices: 143681834--143682050 Score: 298 Period size: 40 Copynumber: 5.5 Consensus size: 40 143681824 TGGATGATAA * * * 143681834 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT * * 143681874 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 143681914 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 143681954 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * 143681994 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT * * 143682033 CC-GGTTAAATCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 143682051 TACTTGGCTT Statistics Matches: 161, Mismatches: 14, Indels: 6 0.89 0.08 0.03 Matches are distributed among these distances: 38 15 0.09 39 15 0.09 40 131 0.81 ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT Found at i:143684892 original size:27 final size:31 Alignment explanation
Indices: 143684839--143684901 Score: 98 Period size: 27 Copynumber: 2.2 Consensus size: 31 143684829 AGCCAAACTA 143684839 AACTTCATACAATGAGAACTTAACAATCAAC 1 AACTTCATACAATGAGAACTTAACAATCAAC 143684870 AACTT-ATACAATG-G-A-TTAACAATCAAC 1 AACTTCATACAATGAGAACTTAACAATCAAC 143684897 AACTT 1 AACTT 143684902 GGATTTGCAT Statistics Matches: 32, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 27 17 0.53 28 1 0.03 29 1 0.03 30 8 0.25 31 5 0.16 ACGTcount: A:0.48, C:0.21, G:0.06, T:0.25 Consensus pattern (31 bp): AACTTCATACAATGAGAACTTAACAATCAAC Found at i:143685818 original size:16 final size:17 Alignment explanation
Indices: 143685797--143685829 Score: 50 Period size: 18 Copynumber: 1.9 Consensus size: 17 143685787 TAAGCAATAG 143685797 TTAACA-ATACAGATCA 1 TTAACACATACAGATCA 143685813 TTAACATCATACAGATC 1 TTAACA-CATACAGATC 143685830 TTATTATCAA Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 16 6 0.40 18 9 0.60 ACGTcount: A:0.45, C:0.21, G:0.06, T:0.27 Consensus pattern (17 bp): TTAACACATACAGATCA Found at i:143688576 original size:53 final size:54 Alignment explanation
Indices: 143688508--143688707 Score: 224 Period size: 53 Copynumber: 3.7 Consensus size: 54 143688498 TTTCCTTTTT * * * * 143688508 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT- 1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA * * 143688561 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA 1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA * * * * * * 143688615 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCATATA 1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA * * * * 143688670 GAACTTATCAATGCCATGCCTCGGCATGGTCTTACATG 1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG 143688708 AAATCCTTAT Statistics Matches: 125, Mismatches: 18, Indels: 7 0.83 0.12 0.05 Matches are distributed among these distances: 52 2 0.02 53 44 0.35 54 34 0.27 55 44 0.35 56 1 0.01 ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34 Consensus pattern (54 bp): GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA Found at i:143688644 original size:55 final size:55 Alignment explanation
Indices: 143688519--143688707 Score: 217 Period size: 55 Copynumber: 3.5 Consensus size: 55 143688509 AACTTACCAT * * * * 143688519 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAA 1 TGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATAGAACTCATCAA * 143688572 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA 1 TGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATAG-AACTCATCAA * ** * * 143688627 TGCCATGTCTTGACATGGTCTTACAT--GATTTTCTTGCCATATAGAACTTATCAA 1 TGCCATGCCTTGACATGGTCTTACATGGGATCCT-TTGCCTTATAGAACTCATCAA * * 143688681 TGCCATGCCTCGGCATGGTCTTACATG 1 TGCCATGCCTTGACATGGTCTTACATG 143688708 AAATCCTTAT Statistics Matches: 116, Mismatches: 14, Indels: 10 0.83 0.10 0.07 Matches are distributed among these distances: 52 2 0.02 53 37 0.32 54 34 0.29 55 43 0.37 ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34 Consensus pattern (55 bp): TGCCATGCCTTGACATGGTCTTACATGGGATCCTTTGCCTTATAGAACTCATCAA Found at i:143688761 original size:47 final size:47 Alignment explanation
Indices: 143688694--143688815 Score: 190 Period size: 47 Copynumber: 2.6 Consensus size: 47 143688684 CATGCCTCGG * ** * 143688694 CATGGTCTTACATGAAATCCTTATCTTACCAAATGCCATGTTCCAAA 1 CATGATCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA * 143688741 CATGATCTTACGTGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA 1 CATGATCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA * 143688788 CATGGTCTTACATGGTATCCTTGTCTTA 1 CATGATCTTACATGGTATCCTTGTCTTA 143688816 GTGCCAATGC Statistics Matches: 68, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 47 68 1.00 ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35 Consensus pattern (47 bp): CATGATCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA Found at i:143689019 original size:44 final size:44 Alignment explanation
Indices: 143688952--143689036 Score: 109 Period size: 44 Copynumber: 1.9 Consensus size: 44 143688942 ATCCTTAACT * * * 143688952 ATCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCC 1 ATCAATTCCTCCTTAAATACCATGGTA-CAACCATGGACTTTTCC * * 143688996 ATCAATTCTTCCTTAATTACCATGGTACAACCATGGACTTT 1 ATCAATTCCTCCTTAAATACCATGGTACAACCATGGACTTT 143689037 GAGATATCAA Statistics Matches: 35, Mismatches: 5, Indels: 2 0.83 0.12 0.05 Matches are distributed among these distances: 43 2 0.06 44 33 0.94 ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36 Consensus pattern (44 bp): ATCAATTCCTCCTTAAATACCATGGTACAACCATGGACTTTTCC Found at i:143692051 original size:50 final size:51 Alignment explanation
Indices: 143691957--143692093 Score: 138 Period size: 50 Copynumber: 2.7 Consensus size: 51 143691947 ATGTGTCAGT * * * 143691957 GTAAGACCATGTCTGGGACATTGCATCGG-TACGA-AAAGAGGAGAGCCGGA 1 GTAAGACCATGTCTGGGACATAGCATCGGCT-CGATATAGAGGAGAGCCAGA * * * 143692007 GTAAGACCATGTCTGGGATATAGCATCGGCCTCGATATA-A-GAGAGTCAGT 1 GTAAGACCATGTCTGGGACATAGCATCGG-CTCGATATAGAGGAGAGCCAGA * * * * 143692057 GTAAGATCATGTCTGAGACATGGCATCGACTCGATAT 1 GTAAGACCATGTCTGGGACATAGCATCGGCTCGATAT 143692094 GTGATTAAAT Statistics Matches: 73, Mismatches: 11, Indels: 7 0.80 0.12 0.08 Matches are distributed among these distances: 49 8 0.11 50 58 0.79 51 4 0.05 52 3 0.04 ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22 Consensus pattern (51 bp): GTAAGACCATGTCTGGGACATAGCATCGGCTCGATATAGAGGAGAGCCAGA Found at i:143692193 original size:43 final size:43 Alignment explanation
Indices: 143692087--143692199 Score: 113 Period size: 43 Copynumber: 2.6 Consensus size: 43 143692077 TGGCATCGAC * * 143692087 TCGATATGTGATTAA-ATGTAAGACCATGTCTAGGACATTGGCA 1 TCGATATGTGA-TAACATGTAAGACCATGTATAGGACAGTGGCA * * ** * * * 143692130 TTG-TATTTTGATTTCGTGTAAGACCTTGTATGGGACAGTGGCA 1 TCGATA-TGTGATAACATGTAAGACCATGTATAGGACAGTGGCA 143692173 TCGATATGTGATAACATGTAAGACCAT 1 TCGATATGTGATAACATGTAAGACCAT 143692200 ATCTAGGATA Statistics Matches: 52, Mismatches: 15, Indels: 6 0.71 0.21 0.08 Matches are distributed among these distances: 42 3 0.06 43 47 0.90 44 2 0.04 ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34 Consensus pattern (43 bp): TCGATATGTGATAACATGTAAGACCATGTATAGGACAGTGGCA Found at i:143694925 original size:24 final size:24 Alignment explanation
Indices: 143694893--143694939 Score: 76 Period size: 24 Copynumber: 2.0 Consensus size: 24 143694883 CTGTCAGGAG ** 143694893 AGGATTTAGGAGTTGATAAGGGAT 1 AGGATTTAGGAGCAGATAAGGGAT 143694917 AGGATTTAGGAGCAGATAAGGGA 1 AGGATTTAGGAGCAGATAAGGGA 143694940 GGAAATCTAG Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 21 1.00 ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23 Consensus pattern (24 bp): AGGATTTAGGAGCAGATAAGGGAT Found at i:143696381 original size:27 final size:27 Alignment explanation
Indices: 143696350--143696458 Score: 132 Period size: 27 Copynumber: 4.0 Consensus size: 27 143696340 AAGCATCCTA * 143696350 GTGGCTATGCCACAATTATCTGATCTG 1 GTGGCTCTGCCACAATTATCTGATCTG * 143696377 GTGGCTCTGCCACATATT-TCTGTTCTG 1 GTGGCTCTGCCACA-ATTATCTGATCTG * 143696404 GTGGCTCTGCCACGATTATCTGTATCTG 1 GTGGCTCTGCCACAATTATCTG-ATCTG * * * 143696432 GTGACTCTGTCAC-ATTATCTGTTCTG 1 GTGGCTCTGCCACAATTATCTGATCTG 143696458 G 1 G 143696459 CAGCCATGCT Statistics Matches: 72, Mismatches: 7, Indels: 7 0.84 0.08 0.08 Matches are distributed among these distances: 26 8 0.11 27 46 0.64 28 18 0.25 ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38 Consensus pattern (27 bp): GTGGCTCTGCCACAATTATCTGATCTG Found at i:143696415 original size:54 final size:54 Alignment explanation
Indices: 143696350--143696458 Score: 157 Period size: 54 Copynumber: 2.0 Consensus size: 54 143696340 AAGCATCCTA * * 143696350 GTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATTTCTGTTCTG 1 GTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACAT-TATCTGTTCTG * * * 143696404 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTGTTCTG 1 GTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACATTATCTGTTCTG 143696458 G 1 G 143696459 CAGCCATGCT Statistics Matches: 49, Mismatches: 5, Indels: 2 0.88 0.09 0.04 Matches are distributed among these distances: 54 31 0.63 55 18 0.37 ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38 Consensus pattern (54 bp): GTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACATTATCTGTTCTG Found at i:143698289 original size:6 final size:6 Alignment explanation
Indices: 143698278--143698302 Score: 50 Period size: 6 Copynumber: 4.2 Consensus size: 6 143698268 GGTAGGGGCA 143698278 GAAATG GAAATG GAAATG GAAATG G 1 GAAATG GAAATG GAAATG GAAATG G 143698303 TCGAGGTCGA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 19 1.00 ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16 Consensus pattern (6 bp): GAAATG Found at i:143700446 original size:69 final size:70 Alignment explanation
Indices: 143700314--143700446 Score: 223 Period size: 69 Copynumber: 1.9 Consensus size: 70 143700304 TAGTTTATTA * * * * 143700314 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA 1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA 143700379 CTTAG 66 CTTAG 143700384 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT 1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT 143700447 GTTATGTGCT Statistics Matches: 59, Mismatches: 4, Indels: 1 0.92 0.06 0.02 Matches are distributed among these distances: 69 36 0.61 70 23 0.39 ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37 Consensus pattern (70 bp): CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA CTTAG Found at i:143701820 original size:47 final size:47 Alignment explanation
Indices: 143701769--143702063 Score: 464 Period size: 47 Copynumber: 6.3 Consensus size: 47 143701759 ACAAGATATG * 143701769 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * * 143701816 TATATGTGATAAGGCCGAGTGGCCAATATGATGAATGTGAAAGTATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * 143701863 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * * * 143701910 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGGAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * 143701957 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * * * * * 143702004 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA * 143702051 TAAATGTGATAAG 1 TATATGTGATAAG 143702064 TCCCGAAGGG Statistics Matches: 230, Mismatches: 18, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 47 230 1.00 ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28 Consensus pattern (47 bp): TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA Found at i:143701941 original size:22 final size:22 Alignment explanation
Indices: 143701913--143701988 Score: 62 Period size: 22 Copynumber: 3.3 Consensus size: 22 143701903 AAATATATAT 143701913 ATGTGATAAGGCCGAGTGGCCA 1 ATGTGATAAGGCCGAGTGGCCA * ** *** 143701935 ATGTGATGAATGTGGAAGTGTATA 1 ATGTGAT-AAGGCCG-AGTGGCCA * 143701959 TATGTGATAAGGCCGAATGGCCA 1 -ATGTGATAAGGCCGAGTGGCCA 143701982 ATGTGAT 1 ATGTGAT 143701989 GAATGTGAAA Statistics Matches: 38, Mismatches: 13, Indels: 6 0.67 0.23 0.11 Matches are distributed among these distances: 22 14 0.37 23 8 0.21 24 9 0.24 25 7 0.18 ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26 Consensus pattern (22 bp): ATGTGATAAGGCCGAGTGGCCA Found at i:143705267 original size:55 final size:55 Alignment explanation
Indices: 143705200--143705310 Score: 204 Period size: 55 Copynumber: 2.0 Consensus size: 55 143705190 CCATCGAAGA * 143705200 AAGACTCGGTATGGGTGATTGTGGATAGGTTGACCAAATCAGCCCATTTCATACT 1 AAGACTCAGTATGGGTGATTGTGGATAGGTTGACCAAATCAGCCCATTTCATACT * 143705255 AAGACTCAGTATGGGTGATTGTGGATAGGTTGACCAAATCGGCCCATTTCATACT 1 AAGACTCAGTATGGGTGATTGTGGATAGGTTGACCAAATCAGCCCATTTCATACT 143705310 A 1 A 143705311 GTACGTATTG Statistics Matches: 54, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 55 54 1.00 ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29 Consensus pattern (55 bp): AAGACTCAGTATGGGTGATTGTGGATAGGTTGACCAAATCAGCCCATTTCATACT Found at i:143706712 original size:24 final size:24 Alignment explanation
Indices: 143706680--143706726 Score: 76 Period size: 24 Copynumber: 2.0 Consensus size: 24 143706670 CTGTCAGGAG ** 143706680 AGGATTTAGGAGTTGATAAGGGAT 1 AGGATTTAGGAGCAGATAAGGGAT 143706704 AGGATTTAGGAGCAGATAAGGGA 1 AGGATTTAGGAGCAGATAAGGGA 143706727 GGAAATCTAG Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 21 1.00 ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23 Consensus pattern (24 bp): AGGATTTAGGAGCAGATAAGGGAT Found at i:143708239 original size:27 final size:26 Alignment explanation
Indices: 143708134--143708245 Score: 116 Period size: 27 Copynumber: 4.2 Consensus size: 26 143708124 AGGAAGTGTC * ** 143708134 CTGGTGGCTATGCCACAATTATCTAAT 1 CTGGTGGCTCTGCCAC-ATTATCTGTT * * 143708161 CTGGTGGCTCTACCACATATTTCTGTT 1 CTGGTGGCTCTGCCACAT-TATCTGTT * 143708188 CTCGTGGCTCTGCCACGATTATCTGTAT 1 CTGGTGGCTCTGCCAC-ATTATCTGT-T * * 143708216 CTGGTGACTCTGTCACATTATCTGTT 1 CTGGTGGCTCTGCCACATTATCTGTT 143708242 CTGG 1 CTGG 143708246 CAGTCATGCT Statistics Matches: 71, Mismatches: 11, Indels: 7 0.80 0.12 0.08 Matches are distributed among these distances: 26 7 0.10 27 48 0.68 28 16 0.23 ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38 Consensus pattern (26 bp): CTGGTGGCTCTGCCACATTATCTGTT Found at i:143708240 original size:54 final size:54 Alignment explanation
Indices: 143708137--143708243 Score: 135 Period size: 54 Copynumber: 2.0 Consensus size: 54 143708127 AAGTGTCCTG * * 143708137 GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATTTCTGTTCTC 1 GTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATATATCTGTTCTC * * * ** 143708191 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT 1 GTGGCTATGCCACAATTATCT-AATCTGGTGACTCTACCACATATATCTGTTCT 143708244 GGCAGTCATG Statistics Matches: 45, Mismatches: 7, Indels: 2 0.83 0.13 0.04 Matches are distributed among these distances: 54 28 0.62 55 17 0.38 ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38 Consensus pattern (54 bp): GTGGCTATGCCACAATTATCTAATCTGGTGACTCTACCACATATATCTGTTCTC Found at i:143713114 original size:18 final size:18 Alignment explanation
Indices: 143713080--143713152 Score: 60 Period size: 18 Copynumber: 4.0 Consensus size: 18 143713070 CACTTCTTCC * 143713080 TTTCTTTTTCTCGTTTTCT 1 TTTCTTTTT-TCTTTTTCT 143713099 TTTCTTTTTTCTTTTTC- 1 TTTCTTTTTTCTTTTTCT ** * 143713116 AATCTTTTTTTCTTGTTCT 1 TTTC-TTTTTTCTTTTTCT * 143713135 TTT-TCTTTTGCTTTTTCT 1 TTTCT-TTTTTCTTTTTCT 143713153 ACAGATTCTT Statistics Matches: 43, Mismatches: 8, Indels: 7 0.74 0.14 0.12 Matches are distributed among these distances: 17 3 0.07 18 30 0.70 19 10 0.23 ACGTcount: A:0.03, C:0.18, G:0.04, T:0.75 Consensus pattern (18 bp): TTTCTTTTTTCTTTTTCT Found at i:143713122 original size:36 final size:36 Alignment explanation
Indices: 143713082--143713151 Score: 90 Period size: 36 Copynumber: 1.9 Consensus size: 36 143713072 CTTCTTCCTT * 143713082 TCTTTTTCTCGTT-TTC-TTTTCTTTTTTCTTTTTCAA 1 TCTTTTTCTC-TTGTTCTTTTTC-TTTTGCTTTTTCAA * 143713118 TCTTTTTTTCTTGTTCTTTTTCTTTTGCTTTTTC 1 TCTTTTTCTCTTGTTCTTTTTCTTTTGCTTTTTC 143713152 TACAGATTCT Statistics Matches: 30, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 35 2 0.07 36 23 0.77 37 5 0.17 ACGTcount: A:0.03, C:0.19, G:0.04, T:0.74 Consensus pattern (36 bp): TCTTTTTCTCTTGTTCTTTTTCTTTTGCTTTTTCAA Found at i:143720968 original size:20 final size:21 Alignment explanation
Indices: 143720902--143720970 Score: 95 Period size: 21 Copynumber: 3.3 Consensus size: 21 143720892 TCACTTCGTT 143720902 TCTTTTTGTCCAAGTTACTTC 1 TCTTTTTGTCCAAGTTACTTC * 143720923 TCTTTTTGTCCAAGTTGCTTC 1 TCTTTTTGTCCAAGTTACTTC * * * 143720944 TCTTTTTGTCTAACTCACTTC 1 TCTTTTTGTCCAAGTTACTTC 143720965 -CTTTTT 1 TCTTTTT 143720971 TCTTTGTGAG Statistics Matches: 43, Mismatches: 5, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 20 6 0.14 21 37 0.86 ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55 Consensus pattern (21 bp): TCTTTTTGTCCAAGTTACTTC Found at i:143723369 original size:18 final size:18 Alignment explanation
Indices: 143723336--143723429 Score: 131 Period size: 18 Copynumber: 5.4 Consensus size: 18 143723326 AAGGTTTTCT 143723336 TATTGATGATA-T--CGA 1 TATTGATGATAGTGACGA 143723351 TATTGATGATAGTGACGA 1 TATTGATGATAGTGACGA * 143723369 TATTGATGCTAGTGACGA 1 TATTGATGATAGTGACGA * * 143723387 TATTGATGCTAGTGACGC 1 TATTGATGATAGTGACGA * 143723405 TATTGATGATAGTGACGC 1 TATTGATGATAGTGACGA 143723423 TATTGAT 1 TATTGAT 143723430 CGTGACCTTG Statistics Matches: 73, Mismatches: 3, Indels: 3 0.92 0.04 0.04 Matches are distributed among these distances: 15 11 0.15 16 1 0.01 18 61 0.84 ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36 Consensus pattern (18 bp): TATTGATGATAGTGACGA Found at i:143731697 original size:14 final size:14 Alignment explanation
Indices: 143731678--143731705 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 143731668 TATATTAGTA 143731678 TTTTCTATTCTATT 1 TTTTCTATTCTATT 143731692 TTTTCTATTCTATT 1 TTTTCTATTCTATT 143731706 AGTATTAGAG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (14 bp): TTTTCTATTCTATT Found at i:143731713 original size:6 final size:6 Alignment explanation
Indices: 143731702--143731780 Score: 66 Period size: 5 Copynumber: 14.2 Consensus size: 6 143731692 TTTTCTATTC * * 143731702 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG 1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG 143731749 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T 1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T 143731781 TAGTGATCCC Statistics Matches: 64, Mismatches: 2, Indels: 14 0.80 0.03 0.17 Matches are distributed among these distances: 4 4 0.06 5 28 0.44 6 26 0.41 8 6 0.09 ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48 Consensus pattern (6 bp): TATTAG Found at i:143731728 original size:11 final size:11 Alignment explanation
Indices: 143731703--143731784 Score: 50 Period size: 11 Copynumber: 7.5 Consensus size: 11 143731693 TTTCTATTCT 143731703 ATTAGTATTAG 1 ATTAGTATTAG 143731714 ---AGTATTAG 1 ATTAGTATTAG ** 143731722 ATTAGTATTCT 1 ATTAGTATTAG * 143731733 ATT-CTATTAG 1 ATTAGTATTAG 143731743 TATTAG-ATTAG 1 -ATTAGTATTAG 143731754 TATTAGTTAGATTAG 1 -ATTAG-T--ATTAG 143731769 ATTAGTATTAG 1 ATTAGTATTAG 143731780 -TTAGT 1 ATTAGT 143731785 GATCCCGGCT Statistics Matches: 56, Mismatches: 6, Indels: 19 0.69 0.07 0.23 Matches are distributed among these distances: 8 8 0.14 10 9 0.16 11 28 0.50 13 1 0.02 14 5 0.09 15 5 0.09 ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48 Consensus pattern (11 bp): ATTAGTATTAG Found at i:143731769 original size:20 final size:21 Alignment explanation
Indices: 143731739--143731784 Score: 85 Period size: 20 Copynumber: 2.2 Consensus size: 21 143731729 TTCTATTCTA 143731739 TTAGTATTAGATTAGTATTAG 1 TTAGTATTAGATTAGTATTAG 143731760 TTAG-ATTAGATTAGTATTAG 1 TTAGTATTAGATTAGTATTAG 143731780 TTAGT 1 TTAGT 143731785 GATCCCGGCT Statistics Matches: 24, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 20 20 0.83 21 4 0.17 ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48 Consensus pattern (21 bp): TTAGTATTAGATTAGTATTAG Found at i:143739997 original size:32 final size:32 Alignment explanation
Indices: 143739956--143740017 Score: 115 Period size: 32 Copynumber: 1.9 Consensus size: 32 143739946 CATCTATTTT 143739956 CATTGTTCAACTCTTTGACAACACGAAAAATC 1 CATTGTTCAACTCTTTGACAACACGAAAAATC * 143739988 CATTGTTCAACTCTTTGACAACATGAAAAA 1 CATTGTTCAACTCTTTGACAACACGAAAAA 143740018 ACCAAAAGCT Statistics Matches: 29, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 32 29 1.00 ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29 Consensus pattern (32 bp): CATTGTTCAACTCTTTGACAACACGAAAAATC Found at i:143747326 original size:13 final size:13 Alignment explanation
Indices: 143747308--143747335 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 143747298 TGAAAATTCG 143747308 TTAATGGTACATT 1 TTAATGGTACATT 143747321 TTAATGGTACATT 1 TTAATGGTACATT 143747334 TT 1 TT 143747336 CCCCTATATT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50 Consensus pattern (13 bp): TTAATGGTACATT Done.