Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 468 of 770
Found at i:144466024 original size:40 final size:40
Alignment explanation
Indices: 144465979--144466127 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 40
144465969 ATAATCCACA
* * * *
144465979 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * *
144466019 TGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * * *
144466059 CGCACGAATGCCTTCGGGTCTTAGCTCGGATATGATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* *
144466099 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
144466128 GTATCATTCA
Statistics
Matches: 91, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
Found at i:144468741 original size:24 final size:24
Alignment explanation
Indices: 144468703--144468753 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
144468693 CGAGCACTAA
144468703 TAAAACAGAGAAAAGAAAACCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
* * *
144468727 TAAAACTGAGTAAAGAAAATCTAG
1 TAAAACAGAGAAAAGAAAACCTAG
144468751 TAA
1 TAA
144468754 GCATTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.10, G:0.16, T:0.16
Consensus pattern (24 bp):
TAAAACAGAGAAAAGAAAACCTAG
Found at i:144470990 original size:13 final size:13
Alignment explanation
Indices: 144470974--144470999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
144470964 TTATTTACCG
144470974 AAATTATTATAAT
1 AAATTATTATAAT
144470987 AAATTATTATAAT
1 AAATTATTATAAT
144471000 TATGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:144474736 original size:20 final size:21
Alignment explanation
Indices: 144474711--144474750 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
144474701 ATTATTTTTT
144474711 AAATTG-AAAAATATTTATAA
1 AAATTGAAAAAATATTTATAA
144474731 AAATTGAAAAAATATTTATA
1 AAATTGAAAAAATATTTATA
144474751 CTTTGAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AAATTGAAAAAATATTTATAA
Found at i:144475373 original size:5 final size:5
Alignment explanation
Indices: 144475363--144475410 Score: 71
Period size: 5 Copynumber: 9.4 Consensus size: 5
144475353 CTATGGATTA
144475363 TATAT TATAT TATAT TATA- TATAT TATATT ATATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TATA-T -TATAT TATAT TATAT TA
144475411 ATGTATGACG
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.10
5 30 0.75
6 2 0.05
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:144475376 original size:12 final size:12
Alignment explanation
Indices: 144475359--144475408 Score: 66
Period size: 12 Copynumber: 4.0 Consensus size: 12
144475349 TTATCTATGG
144475359 ATTATA-TATTAT
1 ATTATATTA-TAT
144475371 ATTATATTATATAT
1 ATTATA-T-TATAT
144475385 ATTATATTATAT
1 ATTATATTATAT
144475397 ATTATATTATAT
1 ATTATATTATAT
144475409 TAATGTATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
12 23 0.66
13 1 0.03
14 9 0.26
15 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATATTATAT
Found at i:144476038 original size:27 final size:27
Alignment explanation
Indices: 144476008--144476065 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
144475998 CGACCTCTAC
* *
144476008 TCACCAAATCTTCTAGCGAATACATAT
1 TCACCAAACCTACTAGCGAATACATAT
* * *
144476035 TCACCAGACCTACTGGCGAATACCTAT
1 TCACCAAACCTACTAGCGAATACATAT
144476062 TCAC
1 TCAC
144476066 TTGACATTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.26
Consensus pattern (27 bp):
TCACCAAACCTACTAGCGAATACATAT
Found at i:144476090 original size:25 final size:26
Alignment explanation
Indices: 144476062--144476111 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
144476052 GAATACCTAT
*
144476062 TCACTTGACA-TTGGCGAACTCCTCC
1 TCACCTGACACTTGGCGAACTCCTCC
144476087 TCACCTGACACTTTGGCGAACTCCT
1 TCACCTGACAC-TTGGCGAACTCCT
144476112 GCTTGCTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.41
27 13 0.59
ACGTcount: A:0.20, C:0.36, G:0.16, T:0.28
Consensus pattern (26 bp):
TCACCTGACACTTGGCGAACTCCTCC
Found at i:144478475 original size:45 final size:47
Alignment explanation
Indices: 144478424--144478514 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 47
144478414 GTTTAATAAG
144478424 GTTTAAAAACCTTATTCTAAAAT-AAT-AAAGAAGTCTAGTTCTAAT
1 GTTTAAAAACCTTATTCTAAAATAAATAAAAGAAGTCTAGTTCTAAT
144478469 GTTTAAAAACCTTATTCTAAAATAAAATAAAAGAAGTCTAGTTCTA
1 GTTTAAAAACCTTATTCTAAAAT-AAATAAAAGAAGTCTAGTTCTA
144478515 TATGGATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
45 23 0.53
47 3 0.07
48 17 0.40
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (47 bp):
GTTTAAAAACCTTATTCTAAAATAAATAAAAGAAGTCTAGTTCTAAT
Found at i:144485060 original size:49 final size:50
Alignment explanation
Indices: 144484990--144485213 Score: 274
Period size: 49 Copynumber: 4.5 Consensus size: 50
144484980 TGAGGTCATG
*
144484990 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
* * * *
144485039 TGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCGGATAA-TTAGGTCACA
* * * ** *
144485090 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
* * *
144485140 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
*
144485189 TGTGTAGTACTAAGTGTAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
144485214 GTGCATACTA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
49 66 0.44
50 47 0.31
51 38 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTAGGTCACA
Found at i:144485162 original size:101 final size:98
Alignment explanation
Indices: 144484990--144485213 Score: 295
Period size: 101 Copynumber: 2.3 Consensus size: 98
144484980 TGAGGTCATG
* *
144484990 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
*
144485055 CAGGCTACTATGCGTACCCGATAACTTCGATCACA
66 CAGGCTACTACGCGTACCCGATAA-TT-GATCACA
* * ** *
144485090 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGT
* * * * *
144485155 GTAGGCTACTACGTGTACCGGATAATTGGTCGCA
65 GCAGGCTACTACGCGTACCCGATAATTGATCACA
*
144485189 TGTGTAGTACTAAGTGTAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
144485214 GTGCATACTA
Statistics
Matches: 109, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.27
100 39 0.36
101 41 0.38
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGCGTACCCGATAATTGATCACA
Found at i:144501321 original size:29 final size:29
Alignment explanation
Indices: 144501288--144501416 Score: 143
Period size: 29 Copynumber: 4.4 Consensus size: 29
144501278 GTGACGAGAT
144501288 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
144501317 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
144501346 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
144501375 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
144501404 TGGCACTAAGTGT
1 TGGCACTAAGTGT
144501417 ACGAAATCGA
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:144509247 original size:23 final size:23
Alignment explanation
Indices: 144509220--144509264 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
144509210 AAGACTAACC
144509220 GATAAGAAGTCATTCCTAACGGG
1 GATAAGAAGTCATTCCTAACGGG
*
144509243 GATAAGGAGTCATTCCTAACGG
1 GATAAGAAGTCATTCCTAACGG
144509265 TGTCTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (23 bp):
GATAAGAAGTCATTCCTAACGGG
Found at i:144512140 original size:9 final size:9
Alignment explanation
Indices: 144512128--144512184 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
144512118 TTTGATAAAC
144512128 ATGATATGT
1 ATGATATGT
*
144512137 ATGATATGCAC
1 ATGATATG--T
*
144512148 ATGACATGT
1 ATGATATGT
*
144512157 ATGATATGCAC
1 ATGATATG--T
144512168 ATGATATGT
1 ATGATATGT
144512177 ATGATATG
1 ATGATATG
144512185 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:144512151 original size:20 final size:20
Alignment explanation
Indices: 144512126--144512196 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
144512116 ATTTTGATAA
144512126 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
144512146 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
144512166 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
144512186 ACATGAGATGT
1 ACATGATATGT
144512197 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:144512173 original size:11 final size:11
Alignment explanation
Indices: 144512137--144512191 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
144512127 CATGATATGT
144512137 ATGATATGCAC
1 ATGATATGCAC
* *
144512148 ATGACATG--T
1 ATGATATGCAC
144512157 ATGATATGCAC
1 ATGATATGCAC
*
144512168 ATGATATG--T
1 ATGATATGCAC
144512177 ATGATATGCAC
1 ATGATATGCAC
144512188 ATGA
1 ATGA
144512192 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:144512296 original size:24 final size:24
Alignment explanation
Indices: 144512240--144512403 Score: 223
Period size: 24 Copynumber: 7.0 Consensus size: 24
144512230 GGAGGAAGTG
144512240 CAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
144512263 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
144512286 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
144512310 C-AAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
144512333 --AAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
144512355 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
144512379 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
144512404 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
22 34 0.26
23 31 0.24
24 54 0.42
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:144512353 original size:69 final size:70
Alignment explanation
Indices: 144512241--144512404 Score: 244
Period size: 69 Copynumber: 2.3 Consensus size: 70
144512231 GAGGAAGTGC
144512241 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTA-TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
144512305 GTTA-T
65 GTTATT
* * *
144512310 CAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
144512375 TTATT
66 TTATT
*
144512380 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
144512405 TGATAAAGCA
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
69 56 0.65
70 18 0.21
71 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATT
Found at i:144512627 original size:30 final size:31
Alignment explanation
Indices: 144512593--144512655 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
144512583 CGTTTACAGT
144512593 AAAGGCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
144512623 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
144512654 AA
1 AA
144512656 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:144519511 original size:28 final size:28
Alignment explanation
Indices: 144519450--144519547 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
144519440 TCACAAATTG
** * *
144519450 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
144519479 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
144519507 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
144519535 GCACTAAGTGTGC
1 GCACTAAGTGTGC
144519548 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:144524510 original size:40 final size:40
Alignment explanation
Indices: 144524455--144524676 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
144524445 TATTCGAATG
*
144524455 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
144524495 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
144524535 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
* *
144524575 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
144524615 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
144524655 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
144524677 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 18 0.11
40 144 0.86
41 6 0.04
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:144524588 original size:80 final size:80
Alignment explanation
Indices: 144524455--144524676 Score: 374
Period size: 80 Copynumber: 2.8 Consensus size: 80
144524445 TATTCGAATG
* **
144524455 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
144524520 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* *
144524535 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
144524600 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* *
144524615 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
144524677 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
79 15 0.11
80 119 0.89
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:144528158 original size:28 final size:29
Alignment explanation
Indices: 144528091--144528191 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
144528081 ATAGTGAATC
*
144528091 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
144528120 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
144528148 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
144528178 CGCACACTTAGTGC
1 CGCACACTTAGTGC
144528192 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:144531076 original size:29 final size:29
Alignment explanation
Indices: 144531044--144531117 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
144531034 GATTCAAGCC
* *
144531044 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACATAGTGCCATACAGTACAAACT
* * *
144531073 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACATAGTGCCATACAGTACAAACT
144531102 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
144531118 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.20
Consensus pattern (29 bp):
CGCACACATAGTGCCATACAGTACAAACT
Found at i:144538250 original size:29 final size:29
Alignment explanation
Indices: 144538218--144538291 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
144538208 GATTCAAGCC
* *
144538218 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACATAGTGCCATACAGTACAAACT
* * *
144538247 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACATAGTGCCATACAGTACAAACT
144538276 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
144538292 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.20
Consensus pattern (29 bp):
CGCACACATAGTGCCATACAGTACAAACT
Found at i:144541377 original size:40 final size:40
Alignment explanation
Indices: 144541332--144541499 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
144541322 CGGAATATAA
*
144541332 CCGGATATAATCACGT-GTACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
144541372 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
144541412 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
144541452 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
144541492 CCGGATAT
1 CCGGATAT
144541500 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:144541482 original size:80 final size:80
Alignment explanation
Indices: 144541350--144541499 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
144541340 AATCACGTGT
* *
144541350 ACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCCCG
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCCCG
144541415 GATATAGCCACTAGC
66 GATATAGCCACTAGC
* * ** * *
144541430 ACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAGCC
1 ACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAGCC
144541493 CGGATAT
64 CGGATAT
144541500 CATTCAATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
ACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCCCG
GATATAGCCACTAGC
Found at i:144544972 original size:46 final size:46
Alignment explanation
Indices: 144544922--144545097 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
144544912 TGGTTGAGCA
144544922 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
144544968 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
144545013 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
144545061 -CCCAAGCTCGTTGAGTTGAGTCCGGGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
144545098 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.06
46 58 0.53
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:144545078 original size:93 final size:93
Alignment explanation
Indices: 144544919--144545090 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
144544909 GGATGGTTGA
* *
144544919 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
144544984 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
144545012 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
*
144545076 TTGAGTCCGGGTTCG
65 TTGAGTCCGAGTTCG
144545091 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 71 0.95
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:144552328 original size:40 final size:40
Alignment explanation
Indices: 144552273--144552494 Score: 299
Period size: 40 Copynumber: 5.6 Consensus size: 40
144552263 TATTCGAATG
*
144552273 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
144552313 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
144552353 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
* * *
144552393 ATATCCGGGCTATGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
144552433 ATATCAGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
144552473 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
144552495 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 19 0.12
40 139 0.85
41 6 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:144552410 original size:80 final size:80
Alignment explanation
Indices: 144552273--144552494 Score: 347
Period size: 80 Copynumber: 2.8 Consensus size: 80
144552263 TATTCGAATG
* **
144552273 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
144552338 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * *
144552353 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATATCCGGGCTATGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
144552418 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
* * * *
144552433 ATATCAGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
144552495 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 14 0.11
80 116 0.89
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:144555623 original size:29 final size:29
Alignment explanation
Indices: 144555561--144555663 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
144555551 GTGACGAGAT
* * *
144555561 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
144555590 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
144555619 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
144555648 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
144555664 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:144563640 original size:29 final size:29
Alignment explanation
Indices: 144563578--144563680 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
144563568 GTGACGAGAT
* * *
144563578 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
144563607 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
144563636 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
144563665 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
144563681 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:144568198 original size:18 final size:18
Alignment explanation
Indices: 144568175--144568211 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
144568165 ATGAAGCTGG
* *
144568175 TTTATCTCATTTTTCCAC
1 TTTATCTAATTTATCCAC
144568193 TTTATCTAATTTATCCAC
1 TTTATCTAATTTATCCAC
144568211 T
1 T
144568212 GCGTCGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTATCTAATTTATCCAC
Found at i:144569986 original size:20 final size:19
Alignment explanation
Indices: 144569916--144569999 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
144569906 ATAGATAAGA
144569916 AATAGATAAATAATATAA-A-
1 AATA-ATAAAT-ATATAATAG
*
144569935 AATAATACTAATATATATTAG
1 AATAATA--AATATATAATAG
144569956 AAT-AT--ATATATAATAG
1 AATAATAAATATATAATAG
144569972 AATAGATAAATATATAATAG
1 AATA-ATAAATATATAATAG
144569992 AATTAATA
1 AA-TAATA
144570000 TTCTAACATC
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
16 13 0.24
18 5 0.09
19 9 0.17
20 22 0.41
21 5 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (19 bp):
AATAATAAATATATAATAG
Found at i:144573433 original size:15 final size:15
Alignment explanation
Indices: 144573413--144573443 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
144573403 CTGTATCAGT
144573413 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
144573428 AATGAATCAGAGCAC
1 AATGAATCAGAGCAC
144573443 A
1 A
144573444 CGGAACCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AATGAATCAGAGCAC
Found at i:144578189 original size:18 final size:18
Alignment explanation
Indices: 144578168--144578210 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
144578158 CCTTTCCCCC
*
144578168 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
144578186 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
144578204 TGCTTTC
1 TTCTTTC
144578211 TTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:144578853 original size:15 final size:17
Alignment explanation
Indices: 144578833--144578864 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
144578823 ACGTTTCATT
144578833 TATATAA-T-CATAAAA
1 TATATAACTGCATAAAA
144578848 TATATAACTGCATAAAA
1 TATATAACTGCATAAAA
144578865 AGATTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.31
Consensus pattern (17 bp):
TATATAACTGCATAAAA
Found at i:144579022 original size:17 final size:17
Alignment explanation
Indices: 144579000--144579038 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
144578990 AATTTAGATG
*
144579000 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
144579017 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
144579034 TAAAA
1 TAAAA
144579039 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:144579122 original size:9 final size:9
Alignment explanation
Indices: 144579108--144579138 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
144579098 ATAAAAAAAG
144579108 ATATTAAAT
1 ATATTAAAT
144579117 ATATTAAAT
1 ATATTAAAT
*
144579126 ATATAAAAT
1 ATATTAAAT
144579135 ATAT
1 ATAT
144579139 AGATAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
ATATTAAAT
Found at i:144579148 original size:17 final size:17
Alignment explanation
Indices: 144579113--144579162 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
144579103 AAAAGATATT
*
144579113 AAATATATTAAATATATA
1 AAATATA-TAAATAAATA
*
144579131 AAATATATAGATAAATA
1 AAATATATAAATAAATA
* *
144579148 ATATATATATATAAA
1 AAATATATAAATAAA
144579163 ATTTTAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 21 0.75
18 7 0.25
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AAATATATAAATAAATA
Found at i:144579339 original size:13 final size:13
Alignment explanation
Indices: 144579323--144579349 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
144579313 TTCGAGTCTC
144579323 TAATTCATATTAA
1 TAATTCATATTAA
144579336 TAATTCATATTAA
1 TAATTCATATTAA
144579349 T
1 T
144579350 TATGAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTCATATTAA
Found at i:144579779 original size:21 final size:23
Alignment explanation
Indices: 144579737--144579792 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
144579727 TTTATTTATC
144579737 TATTTA-ATATTATATTCAA-TT
1 TATTTATATATTATATTCAATTT
*
144579758 TATTTATATATTATA-TCTATTT
1 TATTTATATATTATATTCAATTT
144579780 TATTATATATATT
1 TATT-TATATATT
144579793 CTAAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 9 0.29
22 14 0.45
23 8 0.26
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTTATATATTATATTCAATTT
Found at i:144579792 original size:23 final size:22
Alignment explanation
Indices: 144579743--144579879 Score: 82
Period size: 23 Copynumber: 5.8 Consensus size: 22
144579733 TATCTATTTA
*
144579743 ATATTATATTCAATTTATT-TAT
1 ATATTATATT-ATTTTATTATAT
144579765 ATATTATATCTATTTTATTATAT
1 ATATTATAT-TATTTTATTATAT
* * * *
144579788 ATATTCTAAATATTTTATATCTAA
1 ATATTAT-ATTATTTTAT-TATAT
* *
144579812 ATATTTTATATATTTTTATATTTAT
1 ATATTATAT-TA-TTTTAT-TATAT
144579837 ATATTAATATTA-TTT-TTATAT
1 ATATT-ATATTATTTTATTATAT
144579858 ATTATATATATTTATTTCTATT
1 A-TAT-TATA-TTATTT-TATT
144579880 TTTTGTATAC
Statistics
Matches: 91, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
21 5 0.05
22 23 0.25
23 26 0.29
24 14 0.15
25 18 0.20
26 5 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (22 bp):
ATATTATATTATTTTATTATAT
Found at i:144579812 original size:15 final size:15
Alignment explanation
Indices: 144579787--144579822 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
144579777 TTTTATTATA
144579787 TATATTCTAAATATTT
1 TATA-TCTAAATATTT
144579803 TATATCTAAATATTT
1 TATATCTAAATATTT
144579818 TATAT
1 TATAT
144579823 ATTTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TATATCTAAATATTT
Found at i:144579854 original size:19 final size:18
Alignment explanation
Indices: 144579760--144579870 Score: 72
Period size: 19 Copynumber: 6.1 Consensus size: 18
144579750 ATTCAATTTA
144579760 TTTATATATTATATCTA-T
1 TTTATATATTATAT-TATT
144579778 TTTAT-TA-TATA-TATT
1 TTTATATATTATATTATT
** *
144579793 CTAAATATTTTATATCTAAATAT
1 -TTTATATATTATAT-T--AT-T
*
144579816 TTTATATATT-T-TTATA
1 TTTATATATTATATTATT
144579832 TTTATATATTAATATTATT
1 TTTATATATT-ATATTATT
144579851 TTTATATATTATATATATT
1 TTTATATATTATAT-TATT
144579870 T
1 T
144579871 ATTTCTATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 25
0.69 0.08 0.24
Matches are distributed among these distances:
14 2 0.03
15 1 0.01
16 17 0.24
17 5 0.07
18 14 0.19
19 20 0.28
20 2 0.03
21 1 0.01
22 9 0.12
23 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATATATTATATTATT
Found at i:144579863 original size:32 final size:33
Alignment explanation
Indices: 144579797--144579896 Score: 84
Period size: 32 Copynumber: 3.1 Consensus size: 33
144579787 TATATTCTAA
*
144579797 ATATTT-TATATCTAA-A-TATTTTATATATTTTT
1 ATATTTATATAT-TAATATTATTTTATATA-TATT
144579829 ATATTTATATATTAATATTATTTT-TATATATT
1 ATATTTATATATTAATATTATTTTATATATATT
* * ** * *
144579861 ATATATATTTATTTCTATT-TTTTGTATACATT
1 ATATTTATATATTAATATTATTTTATATATATT
144579893 ATAT
1 ATAT
144579897 ACAATACAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
31 4 0.07
32 38 0.66
33 10 0.17
34 6 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (33 bp):
ATATTTATATATTAATATTATTTTATATATATT
Found at i:144581159 original size:14 final size:14
Alignment explanation
Indices: 144581137--144581170 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
144581127 AATAGAAAAC
*
144581137 TTTTCATCACTTTT
1 TTTTTATCACTTTT
144581151 TTTTTATCACTTTT
1 TTTTTATCACTTTT
*
144581165 TCTTTA
1 TTTTTA
144581171 GCCTCCGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTTATCACTTTT
Found at i:144582509 original size:16 final size:16
Alignment explanation
Indices: 144582488--144582538 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
144582478 AAGAAAGAGC
144582488 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
144582504 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
144582520 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
144582536 AAA
1 AAA
144582539 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:144583478 original size:16 final size:17
Alignment explanation
Indices: 144583457--144583490 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
144583447 AATTAGAGAA
144583457 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
144583473 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
144583490 T
1 T
144583491 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:144584181 original size:15 final size:15
Alignment explanation
Indices: 144584163--144584193 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
144584153 ATAACTAAAG
144584163 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
144584178 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
144584193 A
1 A
144584194 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:144589861 original size:26 final size:26
Alignment explanation
Indices: 144589832--144589920 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
144589822 AAATTACAAG
*
144589832 TTATTAGCAATTAATATTAATTTATA
1 TTATTAGTAATTAATATTAATTTATA
* * **
144589858 TTATTTGTTATTAATATTAA-GAATA
1 TTATTAGTAATTAATATTAATTTATA
*
144589883 TTA--AGTAATTAATAAT-ATTTATA
1 TTATTAGTAATTAATATTAATTTATA
144589906 TTATTA-T-ATTAATAT
1 TTATTAGTAATTAATAT
144589921 ATTTCGATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
22 1 0.02
23 23 0.47
24 1 0.02
25 7 0.14
26 17 0.35
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (26 bp):
TTATTAGTAATTAATATTAATTTATA
Found at i:144589912 original size:8 final size:8
Alignment explanation
Indices: 144589901--144590073 Score: 55
Period size: 8 Copynumber: 21.2 Consensus size: 8
144589891 TTAATAATAT
144589901 TTATATTA
1 TTATATTA
144589909 TTATATTA
1 TTATATTA
*
144589917 ATATATTTCGA
1 TTATA-TT--A
*
144589928 TT-TATAAA
1 TTATAT-TA
144589936 TCTATATT-
1 T-TATATTA
144589944 TCTATATTA
1 T-TATATTA
144589953 TT-TATT-
1 TTATATTA
*
144589959 TTATTATTC
1 TTA-TATTA
*
144589968 TATCTATTA
1 T-TATATTA
144589977 TTATATTA
1 TTATATTA
144589985 TCTAT-TTA
1 T-TATATTA
*
144589993 TAAT-TTA
1 TTATATTA
144590000 -TATATTA
1 TTATATTA
144590007 TT-T-TTA
1 TTATATTA
144590013 TATATTATTA
1 T-TA-TATTA
144590023 TTATATATA
1 TTATAT-TA
144590032 TT-T-TTA
1 TTATATTA
*
144590038 TATATATTT
1 T-TATATTA
*
144590047 TTATTTCTA
1 TTATAT-TA
144590056 TT-TAGTTA
1 TTATA-TTA
*
144590064 TTATTTTA
1 TTATATTA
144590072 TT
1 TT
144590074 TCTATTTAGT
Statistics
Matches: 126, Mismatches: 14, Indels: 50
0.66 0.07 0.26
Matches are distributed among these distances:
6 11 0.09
7 16 0.13
8 58 0.46
9 29 0.23
10 10 0.08
11 2 0.02
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (8 bp):
TTATATTA
Found at i:144590012 original size:13 final size:12
Alignment explanation
Indices: 144589996--144590050 Score: 83
Period size: 12 Copynumber: 4.4 Consensus size: 12
144589986 CTATTTATAA
144589996 TTTATATATTATT
1 TTTATATA-TATT
144590009 TTTATATATTATT
1 TTTATATA-TATT
*
144590022 ATTATATATATT
1 TTTATATATATT
144590034 TTTATATATATT
1 TTTATATATATT
144590046 TTTAT
1 TTTAT
144590051 TTCTATTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 20 0.50
13 20 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTATATATATT
Found at i:144590025 original size:49 final size:46
Alignment explanation
Indices: 144589972--144590144 Score: 162
Period size: 49 Copynumber: 3.7 Consensus size: 46
144589962 TTATTCTATC
* * *
144589972 TATTATTATATTATCTATTTATAATT-TATATATTATTTTTATATA-T
1 TATTATTATATTAT-TATTTAT-ATTATATATTTTATTTCTATTTAGT
144590018 TATTATTATATATATT-TTTATA-TATAT-TTTTATTTCTATTTAGT
1 TATTATTATAT-TATTATTTATATTATATATTTTATTTCTATTTAGT
* *
144590062 TATTATTTTATT-TCTATTTAGTTATTATTTATTTTTATTTCTATTTAGT
1 TATTATTATATTAT-TATTTA--TATTATATA-TTTTATTTCTATTTAGT
144590111 TATTATT-TAGTTATTATTTATATTTAGTATATTT
1 TATTATTATA-TTATTATTTATA-TTA-TATATTT
144590145 AGAATTTATT
Statistics
Matches: 107, Mismatches: 6, Indels: 26
0.77 0.04 0.19
Matches are distributed among these distances:
42 1 0.01
43 15 0.14
44 19 0.18
45 5 0.05
46 14 0.13
47 9 0.08
48 8 0.07
49 35 0.33
50 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (46 bp):
TATTATTATATTATTATTTATATTATATATTTTATTTCTATTTAGT
Found at i:144590070 original size:22 final size:22
Alignment explanation
Indices: 144590045--144590118 Score: 103
Period size: 22 Copynumber: 3.1 Consensus size: 22
144590035 TTATATATAT
144590045 TTTTATTTCTATTTAGTTATTA
1 TTTTATTTCTATTTAGTTATTA
144590067 TTTTATTTCTATTTAGTTATTATTTA
1 TTTTATTTCTATTTAG---TTA-TTA
144590093 TTTTTATTTCTATTTAGTTATTA
1 -TTTTATTTCTATTTAGTTATTA
144590116 TTT
1 TTT
144590119 AGTTATTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
22 19 0.40
23 3 0.06
24 3 0.06
25 3 0.06
26 3 0.06
27 16 0.34
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (22 bp):
TTTTATTTCTATTTAGTTATTA
Found at i:144590090 original size:11 final size:11
Alignment explanation
Indices: 144590054--144590130 Score: 68
Period size: 11 Copynumber: 6.5 Consensus size: 11
144590044 TTTTTATTTC
144590054 TATTTAGTTAT
1 TATTTAGTTAT
144590065 TATTTTA-TT-T
1 TA-TTTAGTTAT
144590075 CTATTTAGTTAT
1 -TATTTAGTTAT
*
144590087 TATTTATTTTTATTT
1 TATTTA--GTTA--T
144590102 CTATTTAGTTAT
1 -TATTTAGTTAT
144590114 TATTTAGTTAT
1 TATTTAGTTAT
144590125 TATTTA
1 TATTTA
144590131 TATTTAGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 5 0.09
11 31 0.56
12 6 0.11
13 3 0.05
14 3 0.05
15 1 0.02
16 6 0.11
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (11 bp):
TATTTAGTTAT
Found at i:144590202 original size:31 final size:33
Alignment explanation
Indices: 144590160--144590233 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 33
144590150 TTATTATTAT
*
144590160 TTAAT-ATTTAATTTAAGT-TAAATAGAA-AAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
144590190 TTAATAATTTAATTTAAGTATAATTAAAATAAA
1 TTAATAATTTAATTTAAGTATAAATAAAATAAA
*
144590223 TTATTAATTTA
1 TTAATAATTTA
144590234 TTTTCATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.13
31 13 0.34
32 7 0.18
33 13 0.34
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (33 bp):
TTAATAATTTAATTTAAGTATAAATAAAATAAA
Found at i:144595896 original size:25 final size:25
Alignment explanation
Indices: 144595862--144595911 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
144595852 ATCTAGTTTC
144595862 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
144595887 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
144595912 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTATAATATCTATTTATTTCTA
Found at i:144595903 original size:15 final size:15
Alignment explanation
Indices: 144595862--144595904 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
144595852 ATCTAGTTTC
144595862 TTTTTATAATATCTA
1 TTTTTATAATATCTA
144595877 --TTTAT--T-TCTA
1 TTTTTATAATATCTA
144595887 TTTTTATAATATCTA
1 TTTTTATAATATCTA
144595902 TTT
1 TTT
144595905 ATTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 4 0.17
11 1 0.04
12 5 0.22
13 5 0.22
14 1 0.04
15 7 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTATAATATCTA
Found at i:144595918 original size:21 final size:23
Alignment explanation
Indices: 144595866--144595919 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
144595856 AGTTTCTTTT
*
144595866 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
144595891 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
144595913 TA-AATAT
1 TATAATAT
144595920 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:144611997 original size:29 final size:29
Alignment explanation
Indices: 144611955--144612012 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
144611945 TAAATAAATT
144611955 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
144611984 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
144612013 TCGGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
CTTTTTTGGAACTACATAGATCTATGGAA
Found at i:144613188 original size:14 final size:14
Alignment explanation
Indices: 144613169--144613196 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
144613159 TATTTACCTT
144613169 CGATCAATATTATC
1 CGATCAATATTATC
144613183 CGATCAATATTATC
1 CGATCAATATTATC
144613197 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:144613763 original size:23 final size:23
Alignment explanation
Indices: 144613737--144613782 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
144613727 GGGATATTAG
144613737 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
144613760 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
144613783 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:144615695 original size:19 final size:18
Alignment explanation
Indices: 144615651--144615702 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 18
144615641 GTAACTTTTT
144615651 TATTTATTATTTTTTATTA
1 TATTT-TTATTTTTTATTA
144615670 TACTTTTTAGTTTTTTGA-TA
1 TA-TTTTTA-TTTTTT-ATTA
144615690 TATTTTCTATTTT
1 TATTTT-TATTTT
144615703 GGTCAGAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 13 0.45
20 15 0.52
21 1 0.03
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (18 bp):
TATTTTTATTTTTTATTA
Found at i:144618452 original size:13 final size:15
Alignment explanation
Indices: 144618434--144618472 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
144618424 GAAGATGGAT
144618434 AAATAAA-AAAA-AG
1 AAATAAATAAAATAG
144618447 AAATAAATAAAATAG
1 AAATAAATAAAATAG
144618462 AATATAAATAA
1 AA-ATAAATAA
144618473 GATAAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 4 0.17
16 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (15 bp):
AAATAAATAAAATAG
Found at i:144619152 original size:11 final size:11
Alignment explanation
Indices: 144619136--144619160 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
144619126 GCGATTATTG
144619136 TATTTATTGTA
1 TATTTATTGTA
144619147 TATTTATTGTA
1 TATTTATTGTA
144619158 TAT
1 TAT
144619161 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:144619783 original size:21 final size:21
Alignment explanation
Indices: 144619744--144619783 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
144619734 TTTATTTAAA
*
144619744 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
144619765 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
144619784 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:144619927 original size:14 final size:14
Alignment explanation
Indices: 144619908--144619936 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
144619898 TAGATAAATA
144619908 ATAATCTATATAAC
1 ATAATCTATATAAC
144619922 ATAATCTATATAAC
1 ATAATCTATATAAC
144619936 A
1 A
144619937 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:144628081 original size:40 final size:40
Alignment explanation
Indices: 144627998--144628205 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
144627988 CGGGATTTAA
* * * * * *
144627998 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
144628038 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
144628078 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
144628118 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
144628158 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
144628198 CCGGATAT
1 CCGGATAT
144628206 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:144628118 original size:80 final size:80
Alignment explanation
Indices: 144628024--144628205 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
144628014 GCTCGATTGT
* * *** * * * **
144628024 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
144628089 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
144628104 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
144628169 TACTAGCATAATTGC
66 AACTAGCACAAATGC
144628184 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
144628206 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:144636104 original size:40 final size:40
Alignment explanation
Indices: 144636021--144636228 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
144636011 CGGGATTTAA
* * * * * *
144636021 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
144636061 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
144636101 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
144636141 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
144636181 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
144636221 CCGGATAT
1 CCGGATAT
144636229 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:144636141 original size:80 final size:80
Alignment explanation
Indices: 144636047--144636228 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
144636037 GCTCGATTGT
* * *** * * * **
144636047 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
144636112 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
144636127 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
144636192 TACTAGCATAATTGC
66 AACTAGCACAAATGC
144636207 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
144636229 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:144638665 original size:27 final size:27
Alignment explanation
Indices: 144638635--144638723 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
144638625 TATTTACTTG
144638635 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* * *
144638662 AAAATGACCGAAATA-CTCGAGTAGGAT
1 AAAATGACCGAAATACCCCCA-TAGGGT
* ** * *
144638689 AAAATGACTGTTATACCCCTATAAGGT
1 AAAATGACCGAAATACCCCCATAGGGT
144638716 AAAATGAC
1 AAAATGAC
144638724 TATTTTGCTC
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.06
27 44 0.88
28 3 0.06
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCATAGGGT
Found at i:144638745 original size:27 final size:27
Alignment explanation
Indices: 144638713--144638841 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
144638703 ACCCCTATAA
* *
144638713 GGTAAAATGACTATTTTGCTCTTTTGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * * *
144638740 GATAAATTGACTATTTTTCCCTCATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
144638767 GGTAAAATGAC-AGTTTTGCCCTTATAT
1 GGTAAAATGACTA-TTTTGCCCTTATGT
* *
144638794 GGTAAAATGACTAATTTGCCCTTAGGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
144638821 GGTAAGATGACTGTTTTGCCC
1 GGTAAAATGACTATTTTGCCC
144638842 CTACGTGATG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:144639181 original size:18 final size:18
Alignment explanation
Indices: 144639127--144639181 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
144639117 AGGACCTGCA
*
144639127 TACTG-TTACTACTACTG
1 TACTGTTTACTATTACTG
* *
144639144 CACTGTTTACTATTATTG
1 TACTGTTTACTATTACTG
*
144639162 TACTGTTTACTGTTACTG
1 TACTGTTTACTATTACTG
144639180 TA
1 TA
144639182 ATGGGCCAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (18 bp):
TACTGTTTACTATTACTG
Found at i:144645346 original size:28 final size:27
Alignment explanation
Indices: 144645283--144645352 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
144645273 ATAGTGAGTC
*
144645283 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
144645310 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
144645338 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
144645353 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:144648020 original size:28 final size:28
Alignment explanation
Indices: 144647951--144648050 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
144647941 GACAAGATTG
* * * *
144647951 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
144647981 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
144648009 GCACTAAGTGTGC-AG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
144648037 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
144648051 GATTCACTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.05
27 4 0.06
28 37 0.60
30 18 0.29
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:144651423 original size:27 final size:26
Alignment explanation
Indices: 144651392--144651444 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
144651382 ATTCAACACC
* *
144651392 TAGGGGTATTTTGGTCATTTTCACCTT
1 TAGGGGCATTTTGGTAATTTTC-CCTT
*
144651419 TAGGGGCATTTTTGTAATTTTCCCTT
1 TAGGGGCATTTTGGTAATTTTCCCTT
144651445 ATTACGGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.49
Consensus pattern (26 bp):
TAGGGGCATTTTGGTAATTTTCCCTT
Found at i:144651759 original size:29 final size:29
Alignment explanation
Indices: 144651697--144651814 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
144651687 TACATACATG
* * *
144651697 CATAT-GCCCACTGGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
144651724 CAAATGGCTCATTTGGCCCAATTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
144651753 CTTATGGCCCACTAGGCCCAATTC-TAATT
1 CATATGGCCCATTAGGCCCAATTCAT-ATT
*
144651782 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
144651811 -ATAT
1 CATAT
144651815 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
27 4 0.05
28 17 0.23
29 52 0.70
30 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:144651800 original size:58 final size:57
Alignment explanation
Indices: 144651702--144651810 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 57
144651692 ACATGCATAT
* * * * *
144651702 GCCCACTGGGCCCAATCTTATTCAAATGGCTCATTTGGCCCAATTCATATTCTTATG
1 GCCCACTAGGCCCAATCTAATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
*
144651759 GCCCACTAGGCCCAATTCTAATTCATATGGCCCATTAGGCCCAAATCATATT
1 GCCCACTAGGCCCAA-TCTAATTCAAATGGCCCATTAGGCCCAAATCATATT
144651811 ATATTCATGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 14 0.31
58 31 0.69
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTAATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
Found at i:144652058 original size:24 final size:23
Alignment explanation
Indices: 144652023--144652067 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
144652013 CCGCAGTCCA
144652023 ACTTTTAGCTTTTCGACATTTTG
1 ACTTTTAGCTTTTCGACATTTTG
* *
144652046 ACTTTTTGACTTTTCGGCATTT
1 ACTTTTAG-CTTTTCGACATTT
144652068 CGGCTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.53
Consensus pattern (23 bp):
ACTTTTAGCTTTTCGACATTTTG
Found at i:144655066 original size:23 final size:23
Alignment explanation
Indices: 144655036--144655092 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
144655026 ATTGGGTAGG
144655036 ATACTCGGATAATCACATATATC
1 ATACTCGGATAATCACATATATC
*
144655059 ATACTCGGATAATCCCATATATC
1 ATACTCGGATAATCACATATATC
144655082 ATACTCGGATA
1 ATACTCGGATA
144655093 CTCGGATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.30
Consensus pattern (23 bp):
ATACTCGGATAATCACATATATC
Found at i:144655094 original size:31 final size:31
Alignment explanation
Indices: 144655059--144655137 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
144655049 CACATATATC
144655059 ATACTCGGATAATCCCATATATCATACTCGG
1 ATACTCGGATAATCCCATATATCATACTCGG
*
144655090 ATACTCGGATAATCACATATATCATACTCGG
1 ATACTCGGATAATCCCATATATCATACTCGG
144655121 ATACTCGGATAATCCCA
1 ATACTCGGATAATCCCA
144655138 AACATGGACT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (31 bp):
ATACTCGGATAATCCCATATATCATACTCGG
Found at i:144659824 original size:43 final size:43
Alignment explanation
Indices: 144659763--144659957 Score: 327
Period size: 43 Copynumber: 4.5 Consensus size: 43
144659753 CATTATAGCA
* *
144659763 TGCTAGGCTCAAAGGCCCGAATACACATCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
*
144659806 TGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
* *
144659849 TGCTAGGTACAAAGGCCCGAATACACATCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
* *
144659892 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCA
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
144659935 TGCTAGGCACGAAGGCCCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
144659958 TAATACCAGC
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.11
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCC
Found at i:144662862 original size:28 final size:28
Alignment explanation
Indices: 144662797--144662897 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
144662787 ATAGTGAATC
*
144662797 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
144662826 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
144662854 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
144662884 CGCACACTTAGTGC
1 CGCACACTTAGTGC
144662898 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:144670820 original size:28 final size:28
Alignment explanation
Indices: 144670755--144670855 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
144670745 ATAGTGAATC
*
144670755 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
144670784 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
144670812 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
144670842 CGCACACTTAGTGC
1 CGCACACTTAGTGC
144670856 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:144674652 original size:58 final size:58
Alignment explanation
Indices: 144674562--144674677 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
144674552 TACCGAAAGA
*
144674562 GTTAGAAAGAATTCATAATGTGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
1 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
144674620 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
1 GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
144674678 ATGATGAGGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (58 bp):
GTTAGAAAGAATTCATAATATGTTTCATCAAAGATTGACATTTGGCCGGATATGACCT
Found at i:144676173 original size:52 final size:51
Alignment explanation
Indices: 144676061--144676238 Score: 218
Period size: 52 Copynumber: 3.5 Consensus size: 51
144676051 ACTAGTGACT
* *
144676061 CAAGTGTGGTACTATTTGAAGGCCACTTTGAGAAG--AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTCA
*
144676110 CAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGC-TTGGTCA
* * * * *
144676162 CAAGTCTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTGGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTC-A
* * *
144676213 CAAGGGTGGTACTCTGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
144676239 CAGGTATCCG
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 32 0.29
50 4 0.04
51 36 0.32
52 40 0.36
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGGTCA
Found at i:144676236 original size:51 final size:51
Alignment explanation
Indices: 144676056--144676238 Score: 212
Period size: 51 Copynumber: 3.6 Consensus size: 51
144676046 ATGTCACTAG
* *
144676056 TGACT-CAAGTGTGGTACTATTTGAAGGCCACTTTGAGAAG-AGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
144676105 GGTC-ACAAGTGTGGTACTATGTGAAAGCCACTTTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* * * *
144676156 TG-GTCACAAGTCTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTGGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * *
144676207 TGACTACAAGGGTGGTACTCTGTGCAGGCCAC
1 TGACTACAAGTGTGGTACTATGTGAAGGCCAC
144676239 CAGGTATCCG
Statistics
Matches: 112, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 34 0.30
51 43 0.38
52 35 0.31
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:144682388 original size:40 final size:40
Alignment explanation
Indices: 144682343--144682509 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
144682333 CGGAATATAA
144682343 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
144682383 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
144682423 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
144682463 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
144682502 CCGGATAT
1 CCGGATAT
144682510 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:144682493 original size:80 final size:79
Alignment explanation
Indices: 144682343--144682509 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
144682333 CGGAATATAA
* *
144682343 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
144682408 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
144682423 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
144682485 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
144682502 CCGGATAT
1 CCGGATAT
144682510 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:144683357 original size:17 final size:19
Alignment explanation
Indices: 144683334--144683379 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
144683324 AAGAAGCATG
144683334 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
144683352 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
144683370 AATCATGCTC
1 AATCATGCTC
144683380 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:144690399 original size:40 final size:40
Alignment explanation
Indices: 144690354--144690520 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
144690344 CGGAATATAA
144690354 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
144690394 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
144690434 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
144690474 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
144690513 CCGGATAT
1 CCGGATAT
144690521 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:144690504 original size:80 final size:79
Alignment explanation
Indices: 144690354--144690520 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
144690344 CGGAATATAA
* *
144690354 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
144690419 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
144690434 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
144690496 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
144690513 CCGGATAT
1 CCGGATAT
144690521 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:144691369 original size:17 final size:19
Alignment explanation
Indices: 144691346--144691391 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
144691336 AAGAAGCATG
144691346 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
144691364 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
144691382 AATCATGCTC
1 AATCATGCTC
144691392 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:144700739 original size:21 final size:21
Alignment explanation
Indices: 144700715--144700756 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
144700705 CTTTGTAACA
144700715 CGCCTAACCCTTATCCGTCGC
1 CGCCTAACCCTTATCCGTCGC
144700736 CGCCTAACCCTTATCCGTCGC
1 CGCCTAACCCTTATCCGTCGC
144700757 TAGAGTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.48, G:0.14, T:0.24
Consensus pattern (21 bp):
CGCCTAACCCTTATCCGTCGC
Found at i:144702257 original size:43 final size:42
Alignment explanation
Indices: 144702191--144702362 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 42
144702181 AGCTCGTACA
* * * *
144702191 ATGCCAACATCCCAGACGTGGTCTTCCATGTAATCAAATATCG
1 ATGCC-ACGTCCCAAACGTGGTCTTACACGTAATCAAATATCG
* *
144702234 ATGCCACTGTCCCAGACAG-GGTCTTACACGGAATCAAATA-CG
1 ATGCCAC-GTCCCAAAC-GTGGTCTTACACGTAATCAAATATCG
144702276 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATCAAA-AGTCG
1 ATGCC-ACGTCCCAAACGTGGTCTTACACGT-AATCAAATA-TCG
* *
144702320 ATGCCAGCGTCCCAAACATGGTCTTACACGATAA-CACATATCG
1 ATGCCA-CGTCCCAAACGTGGTCTTACACG-TAATCAAATATCG
144702363 GATCCTATGT
Statistics
Matches: 111, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.26
43 47 0.42
44 33 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCACGTCCCAAACGTGGTCTTACACGTAATCAAATATCG
Found at i:144702331 original size:44 final size:42
Alignment explanation
Indices: 144702191--144702349 Score: 171
Period size: 44 Copynumber: 3.7 Consensus size: 42
144702181 AGCTCGTACA
* * * *
144702191 ATGCCAACATCCCAGACGTGGTCTTCCATGTAATCAAATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAA-ATCG
* *
144702234 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGGAATC-AAATACG
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACACGTAATCAAAAT-CG
144702276 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATCAAAAGTCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGT-AATCAAAA-TCG
* *
144702320 ATGCCAGCGTCCCAAACATGGTCTTACACG
1 ATGCCAACGTCCCAAACGTGGTCTTACACG
144702350 ATAACACATA
Statistics
Matches: 100, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
41 3 0.03
42 30 0.30
43 32 0.32
44 34 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (42 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAAAATCG
Found at i:144702343 original size:86 final size:85
Alignment explanation
Indices: 144702191--144702349 Score: 223
Period size: 86 Copynumber: 1.9 Consensus size: 85
144702181 AGCTCGTACA
* * * *
144702191 ATGCCAACATCCCAGACGTGGTCTTCCATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACATCCCAAACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAAACAGGGT
144702256 CTTACACGGAATCAAATACG
66 CTTACACGGAATCAAATACG
* *
144702276 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAATCAAA-AGTCGATGCCAGC-GTCCCAAACAT
1 ATGCCAACATCCCAAACGTGGTCTTACACGT-AATCAAATA-TCGATGCCA-CTGTCCCAAACAG
144702339 GGTCTTACACG
63 GGTCTTACACG
144702350 ATAACACATA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
85 28 0.43
86 36 0.55
87 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (85 bp):
ATGCCAACATCCCAAACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAAACAGGGT
CTTACACGGAATCAAATACG
Found at i:144707842 original size:14 final size:14
Alignment explanation
Indices: 144707823--144707860 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
144707813 TTCAAGCATG
144707823 TTTTTTTATTTTTA
1 TTTTTTTATTTTTA
144707837 -TTTTTTA-TTTTA
1 TTTTTTTATTTTTA
144707849 TTTTATTTATTT
1 TTTT-TTTATTT
144707861 GTTAGCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 5 0.24
13 10 0.48
14 4 0.19
15 2 0.10
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:144707847 original size:12 final size:13
Alignment explanation
Indices: 144707824--144707852 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
144707814 TCAAGCATGT
144707824 TTTTTTATTTTTA
1 TTTTTTATTTTTA
144707837 TTTTTTA-TTTTA
1 TTTTTTATTTTTA
144707849 TTTT
1 TTTT
144707853 ATTTATTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:144709100 original size:40 final size:40
Alignment explanation
Indices: 144709005--144709222 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
144708995 TGGATGATAA
*
144709005 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
144709046 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
144709086 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
144709126 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
144709166 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
144709205 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
144709223 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 104 0.64
41 24 0.15
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:144716481 original size:40 final size:40
Alignment explanation
Indices: 144716422--144716563 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
144716412 AAATTGAATG
* * *
144716422 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
144716462 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
144716502 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
144716542 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
144716564 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:144716587 original size:40 final size:39
Alignment explanation
Indices: 144716460--144716589 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
144716450 ATGCTGGAAA
* * *
144716460 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
144716501 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
144716539 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
144716580 TTATATCCGG
1 TTATATCCGG
144716590 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:144723080 original size:22 final size:19
Alignment explanation
Indices: 144723039--144723084 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 19
144723029 TAGAAATAAT
144723039 AAAATAAGAGTATGAAAAA
1 AAAATAAGAGTATGAAAAA
144723058 AAAATAATGAGTAGATGAGAAAA
1 AAAATAA-GAGT--ATGA-AAAA
144723081 AAAA
1 AAAA
144723085 AAAGTGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.30
20 4 0.17
22 4 0.17
23 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (19 bp):
AAAATAAGAGTATGAAAAA
Found at i:144724432 original size:40 final size:40
Alignment explanation
Indices: 144724366--144724516 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
144724356 AAATTGAATG
* * *
144724366 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
144724405 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
144724445 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
144724485 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
144724517 ACGTGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:144724530 original size:40 final size:40
Alignment explanation
Indices: 144724403--144724532 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
144724393 ATGCTGGAAA
* * *
144724403 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
144724443 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
144724483 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
144724523 TTATATCCGG
1 TTATATCCGG
144724533 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:144730939 original size:43 final size:41
Alignment explanation
Indices: 144730843--144730945 Score: 98
Period size: 43 Copynumber: 2.4 Consensus size: 41
144730833 ACATATAGCT
* * * **
144730843 CATACAATGCCATATCCTAAATATGGTCTTACATGTTATCA
1 CATACAATGCCATGTCCTAAATAGGGTCTTACACGAAATCA
** *
144730884 CATATCGTTGCCACTGTCCTATATAGGGTCTTACACGAAATCA
1 CATA-CAATGCCA-TGTCCTAAATAGGGTCTTACACGAAATCA
144730927 CAATACAATGCCAATGTCC
1 C-ATACAATGCC-ATGTCC
144730946 CAGACATGGT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
41 4 0.08
42 6 0.12
43 34 0.71
44 4 0.08
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (41 bp):
CATACAATGCCATGTCCTAAATAGGGTCTTACACGAAATCA
Found at i:144731001 original size:47 final size:49
Alignment explanation
Indices: 144730934--144731105 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 49
144730924 TCACAATACA
* * * * *
144730934 ATGCCAATGTCCCAGACATGGTCTTCCA-TGTA-ATCAAATATTGAGTC-G
1 ATGCC-ATATCCCAAACATGGTCTTACACTG-ACATCAAATATCGAGGCTG
* **
144730982 ATGCCATATCCCAAACATGGTCTTACACTGACTCTCTTATATCGAGGCTG
1 ATGCCATATCCCAAACATGGTCTTACACTGAC-ATCAAATATCGAGGCTG
* **
144731032 ATGCCATATCCCAAACATGGTCTTACACTGACA-C--ATATC-AAGCCA
1 ATGCCATATCCCAAACATGGTCTTACACTGACATCAAATATCGAGGCTG
* *
144731077 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATATCCCAAACATGGTCTTACACT
144731106 AGCTCACATG
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 30 0.28
46 5 0.05
47 20 0.19
48 8 0.08
49 10 0.09
50 33 0.31
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (49 bp):
ATGCCATATCCCAAACATGGTCTTACACTGACATCAAATATCGAGGCTG
Found at i:144731089 original size:45 final size:48
Alignment explanation
Indices: 144730982--144731105 Score: 155
Period size: 50 Copynumber: 2.6 Consensus size: 48
144730972 TATTGAGTCG
* * **
144730982 ATGCCATATCCCAAACATGGTCTTACACTGACTCTCTTATATCGAGGCTG
1 ATGCCATATCCCAAACATGGTCTTACACTGAC-CAC-TATATCGAAGCCA
144731032 ATGCCATATCCCAAACATGGTCTTACACTGA-CAC-ATATC-AAGCCA
1 ATGCCATATCCCAAACATGGTCTTACACTGACCACTATATCGAAGCCA
* *
144731077 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATATCCCAAACATGGTCTTACACT
144731106 AGCTCACATG
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 30 0.44
46 5 0.07
48 2 0.03
50 31 0.46
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAAACATGGTCTTACACTGACCACTATATCGAAGCCA
Found at i:144734996 original size:29 final size:30
Alignment explanation
Indices: 144734963--144735021 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
144734953 CTTTAATATG
* *
144734963 AACTTTGGCAAAATTATA-TTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
144734992 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
144735022 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:144740544 original size:40 final size:40
Alignment explanation
Indices: 144740478--144740644 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
144740468 AAATTGAATG
* * *
144740478 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
144740517 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
144740557 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
144740597 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
144740637 ATATCCGG
1 ATATCCGG
144740645 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:144747759 original size:40 final size:40
Alignment explanation
Indices: 144747693--144747859 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
144747683 AAATTGAATG
* * *
144747693 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
144747732 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
144747772 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
144747812 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
144747852 ATATCCGG
1 ATATCCGG
144747860 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:144772505 original size:40 final size:39
Alignment explanation
Indices: 144772460--144772589 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
144772450 CGGAACATAA
144772460 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
144772500 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * *
144772540 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
144772580 CCGGATATAA
1 CCGGATATAA
144772590 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:144772604 original size:40 final size:40
Alignment explanation
Indices: 144772476--144772626 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
144772466 ATAACCATGT
* * *
144772476 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
** * *
144772516 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
144772556 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
144772596 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
144772627 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:144772610 original size:80 final size:79
Alignment explanation
Indices: 144772476--144772626 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
144772466 ATAACCATGT
*
144772476 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
144772541 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * * * *
144772556 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
144772619 CCGGATAT
64 CCGGATAT
144772627 CATTCAATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:144778067 original size:14 final size:14
Alignment explanation
Indices: 144778048--144778075 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
144778038 ATCGCGTCTA
144778048 TCTAGAAAAGCCCG
1 TCTAGAAAAGCCCG
144778062 TCTAGAAAAGCCCG
1 TCTAGAAAAGCCCG
144778076 AACGCCTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.14
Consensus pattern (14 bp):
TCTAGAAAAGCCCG
Found at i:144780798 original size:19 final size:20
Alignment explanation
Indices: 144780774--144780811 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
144780764 TGGTACACCA
144780774 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
144780793 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
144780812 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:144781149 original size:45 final size:46
Alignment explanation
Indices: 144781032--144781158 Score: 163
Period size: 45 Copynumber: 2.8 Consensus size: 46
144781022 TAACCCGCCC
144781032 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
144781080 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
144781122 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
144781159 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 9
0.84 0.06 0.11
Matches are distributed among these distances:
42 5 0.07
43 2 0.03
44 3 0.04
45 29 0.41
47 29 0.41
48 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Done.