Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 469 of 770
Found at i:144788322 original size:19 final size:20
Alignment explanation
Indices: 144788298--144788335 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
144788288 GGTACCACCA
144788298 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
144788317 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
144788336 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:144788675 original size:45 final size:46
Alignment explanation
Indices: 144788560--144788684 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 46
144788550 AACCCGCCCC
* *
144788560 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCATAGATACAT
* * * *
144788607 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTGCATCCA-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATAG-ATACAT
144788651 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
144788685 TGCTCAACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 5 0.07
45 32 0.47
46 29 0.43
47 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATAGATACAT
Found at i:144792159 original size:40 final size:40
Alignment explanation
Indices: 144792114--144792280 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
144792104 CGGAATATAA
144792114 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
144792154 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
144792194 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
144792234 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
144792273 CCGGATAT
1 CCGGATAT
144792281 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:144792264 original size:80 final size:79
Alignment explanation
Indices: 144792130--144792280 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
144792120 ATAATCACGT
*
144792130 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
144792195 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
144792210 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
144792273 CCGGATAT
64 CCGGATAT
144792281 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:144793127 original size:17 final size:19
Alignment explanation
Indices: 144793104--144793149 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
144793094 AAGAAGCATG
144793104 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
144793122 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
144793140 AATCATGCTC
1 AATCATGCTC
144793150 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:144799064 original size:19 final size:20
Alignment explanation
Indices: 144799040--144799077 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
144799030 GGTACCACCA
144799040 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
144799059 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
144799078 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:144800694 original size:66 final size:68
Alignment explanation
Indices: 144800616--144800802 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
144800606 TAGTACCACT
*
144800616 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
144800678 CACG
65 CACG
144800682 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
144800747 ATCACG
63 ATCACG
144800753 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
144800803 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:144800727 original size:71 final size:71
Alignment explanation
Indices: 144800639--144800802 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
144800629 CGATTTGTCT
144800639 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
144800704 CTTTCA
66 CTTTCA
144800710 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
144800775 CTTTCA
66 CTTTCA
144800781 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
144800803 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:144800840 original size:71 final size:70
Alignment explanation
Indices: 144800639--144800836 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
144800629 CGATTTGTCT
* * * *
144800639 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
144800704 CTTTCA
65 CTTTCA
* * * *
144800710 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
144800775 CTTTCA
65 CTTTCA
* *
144800781 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
144800837 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:144811573 original size:19 final size:20
Alignment explanation
Indices: 144811549--144811586 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
144811539 GGTACCACCA
144811549 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
144811568 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
144811587 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:144811925 original size:45 final size:46
Alignment explanation
Indices: 144811810--144811934 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 46
144811800 AACCCGCCCC
* *
144811810 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCATAGATACAT
* * * *
144811857 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTGCATCCA-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATAG-ATACAT
144811901 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
144811935 TGCTCAACCA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
44 5 0.07
45 32 0.47
46 29 0.43
47 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATAGATACAT
Found at i:144819080 original size:19 final size:20
Alignment explanation
Indices: 144819056--144819093 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
144819046 TGGTACACCA
144819056 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
144819075 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
144819094 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:144819476 original size:92 final size:91
Alignment explanation
Indices: 144819320--144819488 Score: 311
Period size: 92 Copynumber: 1.8 Consensus size: 91
144819310 GCCCCTAAGT
*
144819320 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
144819385 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
*
144819411 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
144819476 CGAGTTCGGATGC
65 CGAGTTCGGATGC
144819489 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
91 27 0.36
92 48 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:144819485 original size:46 final size:45
Alignment explanation
Indices: 144819315--144819484 Score: 220
Period size: 46 Copynumber: 3.7 Consensus size: 45
144819305 AACCCGCCCC
* *
144819315 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
* *
144819360 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* *
144819406 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
144819452 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
144819485 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 34 0.32
46 62 0.58
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:144819504 original size:46 final size:46
Alignment explanation
Indices: 144819317--144819504 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
144819307 CCCGCCCCTA
* * * *
144819317 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
144819361 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
144819409 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
144819454 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
144819500 AGTGA
1 AGTGA
144819505 CATGTCACTT
Statistics
Matches: 116, Mismatches: 12, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 32 0.28
46 65 0.56
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:144824269 original size:93 final size:93
Alignment explanation
Indices: 144824157--144824328 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
144824147 GCCCATAAGT
* *
144824157 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
144824222 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
144824250 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
144824315 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
144824329 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:144824324 original size:46 final size:46
Alignment explanation
Indices: 144824149--144824324 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
144824139 TGTAACCCGC
* * *
144824149 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
144824195 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
144824245 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
144824288 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
144824325 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:144826752 original size:30 final size:30
Alignment explanation
Indices: 144826708--144826796 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
144826698 CAAAGATAAC
144826708 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
144826737 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
144826767 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
144826797 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:144826756 original size:15 final size:15
Alignment explanation
Indices: 144826708--144826787 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
144826698 CAAAGATAAC
*
144826708 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
144826722 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
144826737 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
144826752 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
144826767 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
144826782 AAGAAA
1 AAGAAA
144826788 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:144826796 original size:15 final size:15
Alignment explanation
Indices: 144826719--144826796 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
144826709 AGAAAACCGA
144826719 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
144826734 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
144826748 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
144826763 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
144826779 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
144826794 ATA
1 ATA
144826797 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:144829861 original size:93 final size:93
Alignment explanation
Indices: 144829749--144829920 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
144829739 GCCCATAAGT
* *
144829749 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
144829814 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
144829842 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
144829907 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
144829921 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:144829916 original size:46 final size:46
Alignment explanation
Indices: 144829741--144829916 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
144829731 TGTAACCCGC
* * *
144829741 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
144829787 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
144829837 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
144829880 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
144829917 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:144833982 original size:27 final size:25
Alignment explanation
Indices: 144833936--144833989 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
144833926 ATTCAACACC
* *
144833936 TAGGGGTATTTTGGTCATTTCTGCCCT
1 TAGGGGTATTTCGGTAATTT-T-CCCT
*
144833963 TAGGGGTGTTTCGGTAATTTTCCCT
1 TAGGGGTATTTCGGTAATTTTCCCT
144833988 TA
1 TA
144833990 ATTATGGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 1 0.04
27 17 0.71
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.44
Consensus pattern (25 bp):
TAGGGGTATTTCGGTAATTTTCCCT
Found at i:144834580 original size:16 final size:16
Alignment explanation
Indices: 144834559--144834599 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
144834549 CCAAACTTTT
144834559 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
* *
144834575 AGCTTTTCAGCATTTT
1 AGCTTTTCGGCATTTC
*
144834591 GGCTTTTCG
1 AGCTTTTCG
144834600 ACTTTTGCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:144839101 original size:42 final size:43
Alignment explanation
Indices: 144838987--144839143 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
144838977 TATGATTTTG
* * *
144838987 TGTAAGACCACGTCTGGGAC-GTTGGCATTGACT-TCTGATTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGA-TATCT-AATTACA
* * * *
144839031 TGTAAGACCATGTCTAGGACA-TCAGCATC-ATATCTAATTTCA
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGATATCTAATTACA
* * * *
144839073 TGTAAGACC-CTGTCTGGGGCAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATCTAATTACA
*
144839116 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACAGTGGCAT
144839144 TGTATATGTT
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
42 27 0.30
43 39 0.44
44 23 0.26
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATCTAATTACA
Found at i:144842410 original size:18 final size:18
Alignment explanation
Indices: 144842389--144842423 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
144842379 CCCAATACAG
144842389 TAATAGTAATCAATGCAA
1 TAATAGTAATCAATGCAA
*
144842407 TAATAGTAATCAGTGCA
1 TAATAGTAATCAATGCA
144842424 GTAACCGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
TAATAGTAATCAATGCAA
Found at i:144842867 original size:15 final size:15
Alignment explanation
Indices: 144842835--144842863 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
144842825 ATTTTCAGTG
144842835 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
144842850 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
144842864 ATTTTTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:144844068 original size:43 final size:43
Alignment explanation
Indices: 144843987--144844159 Score: 158
Period size: 43 Copynumber: 4.0 Consensus size: 43
144843977 GACATTATTT
* * * *
144843987 TCGATATGTG-TTCTCGTGTAAGACCACGACTAGAACATTGGCT
1 TCGATATGTGATT-TCGAGTAAGACCACGTCTAGGACATTGGCA
* * *
144844030 TCGACATGTGATTTCGAGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACATTGGCA
* * *
144844073 TCG-TAATTGTGA-TTCGTGTAAGACC-CTGTCTGGGACAATGGCA
1 TCGAT-A-TGTGATTTCGAGTAAGACCAC-GTCTAGGACATTGGCA
* *
144844116 TCGATATGTGATTAC-ATGTAAGACCACGTCTAGGACGTTGGCA
1 TCGATATGTGATTTCGA-GTAAGACCACGTCTAGGACATTGGCA
144844159 T
1 T
144844160 TGTACGATAT
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
42 5 0.05
43 92 0.87
44 9 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACATTGGCA
Found at i:144844828 original size:6 final size:6
Alignment explanation
Indices: 144844810--144844905 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
144844800 AAGAAACATT
* * *
144844810 ATCAGA A-CTAGA ATCAGA ATGAGA ATCA-A ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
144844858 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
144844906 GTAACAGAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
5 8 0.11
6 54 0.77
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:144844885 original size:31 final size:31
Alignment explanation
Indices: 144844794--144844915 Score: 142
Period size: 31 Copynumber: 4.0 Consensus size: 31
144844784 TAACCCATTA
* * *
144844794 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
144844824 CAGAATGAGAATCA-AATTAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
144844854 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
144844885 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
144844916 AAAAAATCAG
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.04
30 31 0.39
31 45 0.57
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:144845107 original size:27 final size:26
Alignment explanation
Indices: 144845065--144845166 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
144845055 GCAAAGTTAT
* *
144845065 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
144845092 CAGATATTATGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
144845118 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
144845146 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
144845167 TTAACAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:144845353 original size:22 final size:23
Alignment explanation
Indices: 144845325--144845386 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
144845315 GCAAATACGT
*
144845325 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
144845347 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
144845369 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
144845387 CAGAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:144847416 original size:49 final size:49
Alignment explanation
Indices: 144847288--144847644 Score: 578
Period size: 49 Copynumber: 7.4 Consensus size: 49
144847278 CCCTTCGAGA
* *
144847288 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
144847335 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
144847382 CTTATCACATTTATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
144847431 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
144847480 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
144847529 CTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
144847578 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
144847627 CTTATCACATATATATAC
1 CTTATCACATATATATAC
144847645 CTCATACAAA
Statistics
Matches: 292, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.16
49 244 0.84
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:144850206 original size:27 final size:27
Alignment explanation
Indices: 144849823--144850198 Score: 454
Period size: 27 Copynumber: 14.0 Consensus size: 27
144849813 GGGGCAAAAT
* * * *
144849823 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
144849849 GGTAATT-TCACCCTATAGGGGTATTTT
1 GGTAATTCT-ACCCTACAGGGGTATTTC
* *
144849876 AGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
144849903 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
144849930 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
144849957 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
144849984 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
144850011 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
144850038 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
144850065 AGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
144850092 GATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
144850119 GGTAATTTTA-CAAACTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* ** *
144850146 GGTAATTTTA-CAAACTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
144850173 GGTAATTCTATCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
144850199 TAGTAATTTC
Statistics
Matches: 309, Mismatches: 36, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
25 1 0.00
26 16 0.05
27 288 0.93
28 4 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:144850256 original size:27 final size:27
Alignment explanation
Indices: 144850211--144850408 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
144850201 GTAATTTCAC
* * * *
144850211 AATCAAGGCTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
144850238 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
144850265 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
144850292 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
144850319 AATCGAGAGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
144850346 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
144850373 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
144850400 AATCGAGGG
1 AATCGAGGG
144850409 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:144850340 original size:81 final size:81
Alignment explanation
Indices: 144850246--144850406 Score: 250
Period size: 81 Copynumber: 2.0 Consensus size: 81
144850236 TAAACTGAGG
* * * * *
144850246 GTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAGTA
1 GTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTA
*
144850311 ATTCTATAAATCGAGA
66 ATTCTACAAATCGAGA
* *
144850327 GTAAAACGATAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATCGAGGGTAAAATGGTA
1 GTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTA
144850392 ATTCTACAAATCGAG
66 ATTCTACAAATCGAG
144850407 GGCATTTCAG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAGTA
ATTCTACAAATCGAGA
Found at i:144850421 original size:54 final size:52
Alignment explanation
Indices: 144850254--144850428 Score: 172
Period size: 54 Copynumber: 3.2 Consensus size: 52
144850244 GGGTAAAATG
* * *
144850254 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGG--ATATA
* * * * *
144850308 GTAATTCTATAAATCGAGAGTAAAACGATAATTTTGTAAATCGAGGG-TGAAA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGAT-ATA
** *
144850360 CGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGCATTTCA
1 -G-TAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGG-ATAT-A
*
144850416 GTAATTTTATAAA
1 GTAATTCTATAAA
144850429 CCAATGGTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 92 0.94
55 1 0.01
56 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.31
Consensus pattern (52 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGATATA
Found at i:144850440 original size:27 final size:27
Alignment explanation
Indices: 144850389--144850639 Score: 136
Period size: 27 Copynumber: 9.3 Consensus size: 27
144850379 GGGTAAAATG
* * * *
144850389 GTAATTCTACAAATCGAGGGCATTTCA
1 GTAATTTTACAAACCAAGGGTATTTCA
* *
144850416 GTAATTTTATAAACCAATGGTATTTCTA
1 GTAATTTTACAAACCAAGGGTATTTC-A
* *
144850444 -TAATTTTTAGAAAGTCAAGGGTATTTCTA
1 GTAA-TTTTACAAA-CCAAGGGTATTTC-A
** * * **
144850473 -TAATTTTGTAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTCA
*** *
144850499 GTAATTTTACAAATTGAGGGTATTTCG
1 GTAATTTTACAAACCAAGGGTATTTCA
* * *
144850526 GT-ATTTCACAAA-CTAGTGGTATTT-T
1 GTAATTTTACAAACCAAG-GGTATTTCA
* * **
144850551 GATAATTTTACAAACTAGGGGTATTTTG
1 G-TAATTTTACAAACCAAGGGTATTTCA
* * *
144850579 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTCA
*
144850606 GTAATTTTACAAACCAGGGGTATTTTC-
1 GTAATTTTACAAACCAAGGGTA-TTTCA
144850633 GTAATTT
1 GTAATTT
144850640 GGTAAATTAA
Statistics
Matches: 177, Mismatches: 37, Indels: 20
0.76 0.16 0.09
Matches are distributed among these distances:
25 3 0.02
26 17 0.10
27 120 0.68
28 21 0.12
29 16 0.09
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGTATTTCA
Found at i:144850448 original size:54 final size:54
Alignment explanation
Indices: 144850390--144850639 Score: 192
Period size: 54 Copynumber: 4.6 Consensus size: 54
144850380 GGTAAAATGG
* * *
144850390 TAATTCTACAAATCGAGGGCATTTCAGTAATTTTATAAACCAATGGTATTTCT-A
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAACCAAGGGTATTT-TGA
* * * * * *
144850444 TAATTTTTAGAAAGTCAAGGGTATTTCTA-TAATTTTGTAAATCAGGGGTATTTTGG
1 TAA-TTTTACAAA-TCGAGGGTATTTC-AGTAATTTTATAAACCAAGGGTATTTTGA
* * * * *
144850500 TAATTTTACAAATTGAGGGTATTTCGGT-ATTTCACAAA-CTAGTGGTATTTTGA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAACCAAG-GGTATTTTGA
* ** *
144850553 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-A
1 TAATTTTACAAATCGA-GGGTATTTCAGTAATTTTATAAACCAAGGGTATTTTGA
*
144850606 GTAATTTTACAAA-CCAGGGGTATTTTC-GTAATTT
1 -TAATTTTACAAATCGA-GGGTA-TTTCAGTAATTT
144850640 GGTAAATTAA
Statistics
Matches: 157, Mismatches: 28, Indels: 22
0.76 0.14 0.11
Matches are distributed among these distances:
52 3 0.02
53 40 0.25
54 58 0.37
55 21 0.13
56 34 0.22
57 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTTGA
Found at i:144850531 original size:26 final size:26
Alignment explanation
Indices: 144850489--144850639 Score: 169
Period size: 27 Copynumber: 5.7 Consensus size: 26
144850479 TGTAAATCAG
*
144850489 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* *
144850516 GGGTATTTCGGT-ATTTCACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
*
144850541 GTGGTATTTTGATAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAACTA
* *
144850568 GGGGTATTTTGGTAATTTTATAAACAAA
1 -GGGTATTTTGGTAATTTTACAAAC-TA
* *
144850596 GGGTATTTTAGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
*
144850622 GGGGTATTTTCGTAATTT
1 -GGGTATTTTGGTAATTT
144850640 GGTAAATTAA
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.02
26 20 0.19
27 82 0.77
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:144856525 original size:49 final size:49
Alignment explanation
Indices: 144856463--144856653 Score: 231
Period size: 49 Copynumber: 3.9 Consensus size: 49
144856453 CAAAGCTATC
*
144856463 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* * * * *
144856512 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA--ATT
* * *
144856562 TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 T-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* * * *
144856612 CGGTACACGTAGTAGCCTGCAATTAGTACTACACATGTGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
144856654 TCACAATAGT
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
48 3 0.03
49 74 0.62
50 4 0.03
51 36 0.30
52 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
Found at i:144856578 original size:100 final size:100
Alignment explanation
Indices: 144856464--144856651 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
144856454 AAAGCTATCT
**
144856464 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
144856529 TGCACTTAGTACTACACACGTGATCATAGTTTTTG
66 TGCAATTAGTACTACACACGTGATCATAGTTTTTG
*
144856564 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
144856629 TGCAATTAGTACTACACATGTGA
66 TGCAATTAGTACTACACACGTGA
144856652 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCAATTAGTACTACACACGTGATCATAGTTTTTG
Found at i:144860992 original size:15 final size:15
Alignment explanation
Indices: 144860960--144860988 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
144860950 ATTTTCACTG
144860960 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
144860975 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
144860989 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:144862169 original size:43 final size:43
Alignment explanation
Indices: 144862086--144862257 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
144862076 CATAGGATTT
** * **
144862086 TCGATATGTG-TTTTGTGTAAGACCACGTCTAGGATGTTGGCA
1 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
*
144862128 TCGATATGTGATTTCGA-GTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTTC-ATGTAAGACCACGTCTGGGACATTGGCA
** *
144862171 TCG-TAATTGTGA-TTCATGTAAGACCTTGTCTGGGACAGTGGCA
1 TCGAT-A-TGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
* * *
144862214 TCGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
144862257 T
1 T
144862258 TGTACGATAT
Statistics
Matches: 109, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
42 17 0.16
43 87 0.80
44 5 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCA
Found at i:144864050 original size:2 final size:2
Alignment explanation
Indices: 144864043--144864076 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
144864033 GTTAATGCTG
144864043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
144864077 ACGATTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:144865238 original size:50 final size:50
Alignment explanation
Indices: 144865171--144865276 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
144865161 ATAAATACGT
144865171 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
1 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
*
144865221 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
144865271 ATGAGA
1 ATGAGA
144865277 TAAAGCCGAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (50 bp):
ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
Found at i:144865282 original size:35 final size:35
Alignment explanation
Indices: 144865242--144865313 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
144865232 ATATATGTGG
144865242 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144865277 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144865312 TA
1 TA
144865314 TGTATATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (35 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
Found at i:144865334 original size:48 final size:48
Alignment explanation
Indices: 144865277--144865408 Score: 246
Period size: 48 Copynumber: 2.8 Consensus size: 48
144865267 ATGTATGAGA
144865277 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
144865325 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* *
144865373 TAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
144865409 GTGTGTATAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
Found at i:144865357 original size:83 final size:84
Alignment explanation
Indices: 144865192--144865361 Score: 306
Period size: 83 Copynumber: 2.0 Consensus size: 84
144865182 ATATATGTGG
144865192 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGTATATATGTGGTAAAGCCGAATGGCT
1 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATG-ATATATGTGGTAAAGCCGAATGGCT
144865257 AATGTGAAATATGTATGAGA
65 AATGTGAAATATGTATGAGA
* *
144865277 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTA
1 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGATATATGTGGTAAAGCCGAATGGCTA
144865341 ATGTGAAATATGTATGAGA
66 ATGTGAAATATGTATGAGA
144865360 TA
1 TA
144865362 TGTATATGTG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
83 46 0.55
85 37 0.45
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.28
Consensus pattern (84 bp):
TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGATATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATGTATGAGA
Found at i:144867000 original size:80 final size:79
Alignment explanation
Indices: 144866903--144867191 Score: 388
Period size: 80 Copynumber: 3.6 Consensus size: 79
144866893 AGTTATATAG
* *
144866903 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCAGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATATATCCAGGCTAAGTCCCGAAGAGCATT
144866967 CGTGCT-G-ATGTTAT
65 CGTGCTAGAATG-TAT
* * * * *
144866981 AGCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATGTATCCGGGGCTAAGTTCCGAAGAGCA
1 --CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC-AGGCTAAGTCCCGAAGAGCA
144867046 TTCGTGCTAGTAATGTAT
63 TTCGTGCTAG-AATGTAT
* * * *
144867064 CCGAGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATGTATCCAGGCTAAGTTCTGAAGAGCATTC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTC
144867128 GTGCTAGTAATGTAT
66 GTGCTAG-AATGTAT
144867143 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAA
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAA
144867192 ACCTCGAAGG
Statistics
Matches: 189, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
79 59 0.31
80 74 0.39
81 49 0.26
82 1 0.01
83 3 0.02
84 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTC
GTGCTAGAATGTAT
Found at i:144867200 original size:40 final size:39
Alignment explanation
Indices: 144866906--144867191 Score: 319
Period size: 40 Copynumber: 7.2 Consensus size: 39
144866896 TATATAGCCG
* * *
144866906 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCA
1 GGCTAAGT-TCGAAGAGCATTCGTGCTAG-TGATGTATCCA
* * * * *
144866946 GGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATAGCCG
1 GGCTAAGT-TCGAAGAGCATTCGTGCTAG-TGATGTATCCA
* *
144866986 GGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATGTATCCGG
1 GGCTAAG-TTCGAAGAGCATTCGTGCTAGTGATGTATCC-A
*
144867027 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCC-
1 GGCTAAGTT-CGAAGAGCATTCGTGCTAGTGATGTATCCA
144867066 GAGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATGTATCCA
1 G-GCTAAGTT-CGAAGAGCATTCGTGCTAGTGATGTATCCA
* *
144867106 GGCTAAGTTCTGAAGAGCATTCGTGCTAGTAATGTATCCG
1 GGCTAAGTTC-GAAGAGCATTCGTGCTAGTGATGTATCCA
*
144867146 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCA
1 GGCTAAGTT-CGAAGAGCATTCGTGCTAGTGATGTATCCA
144867186 GGCTAA
1 GGCTAA
144867192 ACCTCGAAGG
Statistics
Matches: 224, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.00
39 35 0.16
40 148 0.66
41 40 0.18
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
GGCTAAGTTCGAAGAGCATTCGTGCTAGTGATGTATCCA
Found at i:144867304 original size:29 final size:28
Alignment explanation
Indices: 144867223--144867322 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
144867213 GAGTTATGAG
* * * *
144867223 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
**
144867251 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
* *
144867279 GGCACTATGTTTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
144867308 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
144867323 AATCAGTCAG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:144869532 original size:2 final size:2
Alignment explanation
Indices: 144869525--144869556 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
144869515 GTTAATGCTG
144869525 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
144869557 ACGATTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:144870714 original size:50 final size:50
Alignment explanation
Indices: 144870647--144870752 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
144870637 ATAAATACGT
144870647 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
1 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
*
144870697 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
144870747 ATGAGA
1 ATGAGA
144870753 TAAAGCCGAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (50 bp):
ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGG
Found at i:144870758 original size:35 final size:35
Alignment explanation
Indices: 144870718--144870789 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
144870708 ATATATGTGG
144870718 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144870753 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144870788 TA
1 TA
144870790 TGTATATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (35 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
Found at i:144870810 original size:48 final size:48
Alignment explanation
Indices: 144870753--144870884 Score: 246
Period size: 48 Copynumber: 2.8 Consensus size: 48
144870743 ATGTATGAGA
144870753 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
144870801 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* *
144870849 TAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
144870885 GTGTGTATAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
Found at i:144870833 original size:83 final size:84
Alignment explanation
Indices: 144870668--144870837 Score: 306
Period size: 83 Copynumber: 2.0 Consensus size: 84
144870658 ATATATGTGG
144870668 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGTATATATGTGGTAAAGCCGAATGGCT
1 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATG-ATATATGTGGTAAAGCCGAATGGCT
144870733 AATGTGAAATATGTATGAGA
65 AATGTGAAATATGTATGAGA
* *
144870753 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTA
1 TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGATATATGTGGTAAAGCCGAATGGCTA
144870817 ATGTGAAATATGTATGAGA
66 ATGTGAAATATGTATGAGA
144870836 TA
1 TA
144870838 TGTATATGTG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
83 46 0.55
85 37 0.45
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.28
Consensus pattern (84 bp):
TAAAGCCGAATGGCTAATGTGAAATATGGATGAGAAATGATATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATGTATGAGA
Found at i:144872487 original size:79 final size:79
Alignment explanation
Indices: 144872380--144872665 Score: 404
Period size: 79 Copynumber: 3.6 Consensus size: 79
144872370 AGTTATATAG
* *
144872380 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATATCCGGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATATATCCGGGCTAAGTCCCGAAGAGCATT
144872444 CGTGCT-G-ATGTTAT
65 CGTGCTAGAATG-TAT
* * *
144872458 AGCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 --CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
144872522 TCGTGCTAGTAATGTAT
64 TCGTGCTAG-AATGTAT
* *
144872539 CC-GGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTC
144872602 GTGCTAGTAATGTAT
66 GTGCTAG-AATGTAT
*
144872617 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAA
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA
144872666 ACCTCGAAGG
Statistics
Matches: 191, Mismatches: 8, Indels: 14
0.90 0.04 0.07
Matches are distributed among these distances:
78 65 0.34
79 85 0.45
80 35 0.18
81 3 0.02
82 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTC
GTGCTAGAATGTAT
Found at i:144872605 original size:118 final size:118
Alignment explanation
Indices: 144872380--144872686 Score: 428
Period size: 118 Copynumber: 2.6 Consensus size: 118
144872370 AGTTATATAG
* *
144872380 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT-TATATCCGGGCTAAGTCCCGAAGAGCATT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-A-GTATATATCCAGGCTAAGTCCCGAAGAGCATT
*
144872444 CGTGCTGATGTTATAGCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTAATGTAT
64 CGTGCTGATGATATAGCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTAATGTAT
* *
144872499 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCC-GGCTAAGTTCCGAAGAGCATT-
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-ATATATCCAGGCTAAGTCCCGAAGAGCATTC
* *
144872562 GTGCT-AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
65 GTGCTGA-TGATATAGCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTAATGTAT
*
144872617 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAA-ACCTCGAAG-GCATT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-ATATATCCAGGCTAAGTCC-CGAAGAGCATT
*
144872680 CATGCTG
64 CGTGCTG
144872687 GAGTTATGAG
Statistics
Matches: 169, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
116 1 0.01
117 24 0.14
118 94 0.56
119 50 0.30
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (118 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTATATATCCAGGCTAAGTCCCGAAGAGCATTCG
TGCTGATGATATAGCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTAATGTAT
Found at i:144872674 original size:40 final size:40
Alignment explanation
Indices: 144872380--144872665 Score: 411
Period size: 40 Copynumber: 7.2 Consensus size: 40
144872370 AGTTATATAG
* * *
144872380 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTAT
* * * *
144872420 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATGTTATAG
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG-TGATGTAT
*
144872460 CCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
144872499 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
144872539 CC-GGCTAAGTTCCGAAGAGCATT-GTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
144872577 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
144872617 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
144872657 CCAGGCTAA
1 CCGGGCTAA
144872666 ACCTCGAAGG
Statistics
Matches: 231, Mismatches: 11, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
38 16 0.07
39 75 0.32
40 140 0.61
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:144872734 original size:28 final size:26
Alignment explanation
Indices: 144872692--144872795 Score: 84
Period size: 28 Copynumber: 3.7 Consensus size: 26
144872682 TGCTGGAGTT
* *
144872692 ATGAGGCACTGTGTGTGCAAGTTCTTCA
1 ATGA-GCACTATGTGTGCGAGTTCTT-A
**
144872720 ACTGAGCACTATGTGTGCGAGATTGGTA
1 A-TGAGCACTATGTGTGCGAG-TTCTTA
144872748 ATTGAGGCACTATGT-TGCGAGTTCTTTA
1 A-TGA-GCACTATGTGTGCGAGTTC-TTA
*
144872776 ATCGAGCGCTATGTGTGCGA
1 AT-GAGCACTATGTGTGCGA
144872796 AATCAGTCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
27 11 0.18
28 36 0.58
29 15 0.24
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (26 bp):
ATGAGCACTATGTGTGCGAGTTCTTA
Found at i:144872823 original size:56 final size:56
Alignment explanation
Indices: 144872693--144872823 Score: 140
Period size: 56 Copynumber: 2.3 Consensus size: 56
144872683 GCTGGAGTTA
* * ** *
144872693 TGAGGCACTGTGTGTGCAAGTTCTTCAACTGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTGTGT-TGCGAGTTCTTCAACTGAGCACTATGTGTGCGAAATCAGTAAG
* * * *
144872750 TGAGGCACTATGTTGCGAGTTCTTTAA-TCGAGCGCTATGTGTGCGAAATCAGTCAG
1 TGAGGCACTGTGTTGCGAGTTCTTCAACT-GAGCACTATGTGTGCGAAATCAGTAAG
144872806 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGT-TGCGA
144872824 AGTGTGTTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
55 10 0.16
56 40 0.65
57 12 0.19
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.31
Consensus pattern (56 bp):
TGAGGCACTGTGTTGCGAGTTCTTCAACTGAGCACTATGTGTGCGAAATCAGTAAG
Found at i:144875005 original size:2 final size:2
Alignment explanation
Indices: 144874998--144875029 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
144874988 GTTAATGCTG
144874998 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
144875030 ACGATTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:144876186 original size:49 final size:50
Alignment explanation
Indices: 144876113--144876225 Score: 210
Period size: 49 Copynumber: 2.3 Consensus size: 50
144876103 TGTACAAGAT
*
144876113 AAATACGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
144876163 AAATATG-ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
144876212 AAATATGTATGAGA
1 AAATATGTATGAGA
144876226 TAAAGCCGAA
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
49 49 0.80
50 12 0.20
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.28
Consensus pattern (50 bp):
AAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:144876231 original size:35 final size:35
Alignment explanation
Indices: 144876191--144876262 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
144876181 ATATATGTGG
144876191 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144876226 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
144876261 TA
1 TA
144876263 TGTATATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (35 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
Found at i:144876283 original size:48 final size:48
Alignment explanation
Indices: 144876226--144876357 Score: 246
Period size: 48 Copynumber: 2.8 Consensus size: 48
144876216 ATGTATGAGA
144876226 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
144876274 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* *
144876322 TAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
144876358 GTGTGTATAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
Found at i:144876292 original size:83 final size:83
Alignment explanation
Indices: 144876142--144876310 Score: 304
Period size: 83 Copynumber: 2.0 Consensus size: 83
144876132 ATATATGTGG
144876142 TAAAGCCGAATGGCTAATGTGAAATATGATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTA
1 TAAAGCCGAATGGCTAATGTGAAATATGATGAGAAATG-ATATATGTGGTAAAGCCGAATGGCTA
144876207 ATGTGAAATATGTATGAGA
65 ATGTGAAATATGTATGAGA
*
144876226 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTA
1 TAAAGCCGAATGGCTAATGTGAAATATG-ATGAGAAATGATATATGTGGTAAAGCCGAATGGCTA
144876290 ATGTGAAATATGTATGAGA
65 ATGTGAAATATGTATGAGA
144876309 TA
1 TA
144876311 TGTATATGTG
Statistics
Matches: 83, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
83 46 0.55
84 28 0.34
85 9 0.11
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.28
Consensus pattern (83 bp):
TAAAGCCGAATGGCTAATGTGAAATATGATGAGAAATGATATATGTGGTAAAGCCGAATGGCTAA
TGTGAAATATGTATGAGA
Found at i:144876473 original size:15 final size:15
Alignment explanation
Indices: 144876447--144876484 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
144876437 ATGATAGTCG
144876447 ATGTGAATGTTGTAAC
1 ATGTG-ATGTTGTAAC
144876463 ATGTGATGTTGTAAC
1 ATGTGATGTTGTAAC
144876478 ATGTGAT
1 ATGTGAT
144876485 TAAATGTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (15 bp):
ATGTGATGTTGTAAC
Found at i:144879531 original size:14 final size:14
Alignment explanation
Indices: 144879514--144879549 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
144879504 TACAAAATAG
144879514 TATATATTATTTTT
1 TATATATTATTTTT
144879528 TATATATTA-TTTT
1 TATATATTATTTTT
144879541 TAT-TATTAT
1 TATATATTAT
144879550 ACATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.24
13 7 0.33
14 9 0.43
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATATATTATTTTT
Found at i:144879562 original size:13 final size:12
Alignment explanation
Indices: 144879543--144879579 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
144879533 ATTATTTTTA
144879543 TTATTATACATT
1 TTATTATACATT
*
144879555 TTATTTATAAATT
1 TTA-TTATACATT
144879568 TTATTATACATT
1 TTATTATACATT
144879580 ATATATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACATT
Found at i:144879581 original size:19 final size:19
Alignment explanation
Indices: 144879559--144879600 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
144879549 TACATTTTAT
*
144879559 TTATAAATTTTATTATACA
1 TTATAAATTTTACTATACA
* *
144879578 TTATATATTTTACTATATA
1 TTATAAATTTTACTATACA
144879597 TTAT
1 TTAT
144879601 TCCTTGCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATAAATTTTACTATACA
Found at i:144879757 original size:10 final size:10
Alignment explanation
Indices: 144879742--144879791 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
144879732 ATGATAGTAT
*
144879742 TTATATTTCA
1 TTATATTTTA
144879752 TTATATTTTA
1 TTATATTTTA
*
144879762 TT-TA-TGTA
1 TTATATTTTA
*
144879770 TTTTATTTTA
1 TTATATTTTA
*
144879780 TTATATATTA
1 TTATATTTTA
144879790 TT
1 TT
144879792 CCTTAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 5 0.15
9 4 0.12
10 24 0.73
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATATTTTA
Found at i:144879821 original size:2 final size:2
Alignment explanation
Indices: 144879814--144879842 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
144879804 TTCCTTTTAT
144879814 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
144879843 TTCATTATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:144880366 original size:60 final size:59
Alignment explanation
Indices: 144880252--144880368 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 59
144880242 ATTGTTATAC
* *
144880252 ATTATGTAATTTATATTGCTAGATTCATTGCTTTCTATGTTATATTATGTATGAAATATT
1 ATTATGTAATCTATATTGCTAGATTCATTGCTTTCTATGTTATA-TATGCATGAAATATT
* ** *
144880312 ATTATGTAATCTATATTGTTATTTTCATTGTTTTCTATGATTATA-ACTGCATGAAAT
1 ATTATGTAATCTATATTGCTAGATTCATTGCTTTCTATG-TTATATA-TGCATGAAAT
144880369 GATAACGTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
59 1 0.02
60 43 0.88
61 5 0.10
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (59 bp):
ATTATGTAATCTATATTGCTAGATTCATTGCTTTCTATGTTATATATGCATGAAATATT
Found at i:144882923 original size:24 final size:24
Alignment explanation
Indices: 144882891--144882953 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
144882881 AATCTCAAAT
144882891 GCACTATGTGTGTC-ATTTACTATG
1 GCACTATGTGTG-CGATTTACTATG
144882915 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
144882939 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
144882954 ACATAATAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.03
24 37 0.97
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:144893251 original size:73 final size:73
Alignment explanation
Indices: 144893144--144893492 Score: 394
Period size: 73 Copynumber: 4.6 Consensus size: 73
144893134 ATTTCTGATT
* ** *
144893144 TTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT
1 TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
144893209 AATTTATG
66 AATTTCTG
* * * * *
144893217 TTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATT
1 TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAAT
144893281 TTCAATTTCTGG
63 TTCAATTTCT-G
**
144893293 TTTTCAATTTCTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 --TTC-A-------TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
144893358 AGGTAATTTCAATTTCTG
56 AGGTAATTTCAATTTCTG
** * *
144893376 TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
1 TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
144893441 AATTTTTG
66 AATTTCTG
**
144893449 TTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
144893493 GGCTCACATG
Statistics
Matches: 238, Mismatches: 23, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
72 2 0.01
73 147 0.62
75 21 0.09
76 1 0.00
78 3 0.01
79 1 0.00
81 2 0.01
83 1 0.00
84 24 0.10
86 34 0.14
87 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (73 bp):
TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTG
Found at i:144893298 original size:14 final size:13
Alignment explanation
Indices: 144893279--144893309 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
144893269 CGCTGAGGTA
144893279 TTTTCAATTTCTGG
1 TTTTCAATTTCT-G
144893293 TTTTCAATTTCTG
1 TTTTCAATTTCTG
144893306 TTTT
1 TTTT
144893310 AAAATCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:144893569 original size:166 final size:165
Alignment explanation
Indices: 144893382--144894175 Score: 536
Period size: 166 Copynumber: 4.9 Consensus size: 165
144893372 TCTGTTTGTC
*
144893382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTTAAATTT
* * * *
144893446 TTGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 CTGTTTGTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTA
* * *
144893511 TTTTCAATTTTTGTTTTTCAATTTCTGTTCGTAAAAA
129 ATTTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* *
144893548 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTTAAATTT
* * * *
144893613 CTGTTTTTCAAAAATCAACTCATATTGCGAAATGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 CTGTTTGTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
144893678 TTCAATTTC----TG-----TT-TG-TC-------
131 TTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* * * * *
144893695 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCT-TTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGGTATATTTAAA
** * * * * *
144893758 TTTCTGTTCTTCAATTTCTGTTCATAAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAG--T
63 TTTCTG---------TT-TG-T-A-AAAAATCAACTCATATTGCGA-A-AG-GTGAGTTGAGCCT
* * * ** ** * * **
144893818 -TG-A-GC-CTCAGG-ACA-CGCAGAGGTAT-TTT-TAAATTTCTGTT--T--TCA
112 CGGCACACGCTGAGGTA-ATTTCA-ATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* * ** * *
144893862 AA-AATCGACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGACAAGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTTAAATTT
* * * * * *
144893925 CTGTTTGTCAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 CTGTTTGTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTA
* *
144893990 TTTTCAATTTCTGTTCT-TTAATTTCTGTTCGTAAAAA
129 ATTTCAATTTCTGTT-TGTCAATTTCTGTTCGTAAAAA
* * * *
144894027 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTTAAATTT
* * * *
144894092 CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 CTGTTTGTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
144894157 TTCAATTTCTGTTTGTCAA
131 TTCAATTTCTGTTTGTCAA
144894176 AAATTAACTC
Statistics
Matches: 488, Mismatches: 80, Indels: 121
0.71 0.12 0.18
Matches are distributed among these distances:
146 2 0.00
147 37 0.08
148 11 0.02
149 12 0.02
151 17 0.03
152 3 0.01
153 3 0.01
154 9 0.02
155 12 0.02
156 3 0.01
157 4 0.01
158 4 0.01
159 12 0.02
160 6 0.01
161 31 0.06
162 2 0.00
163 3 0.01
164 25 0.05
165 51 0.10
166 131 0.27
167 110 0.23
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (165 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTTAAATTT
CTGTTTGTAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
TTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
Found at i:144893693 original size:240 final size:240
Alignment explanation
Indices: 144893150--144894498 Score: 2209
Period size: 240 Copynumber: 5.7 Consensus size: 240
144893140 GATTTTCAAA
* ** * *
144893150 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
** * * * * * *
144893215 TGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTAT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* *
144893280 TTTCAATTTCTGGTTTTCAATTTCTGTT--T-----TAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
* * *
144893338 TTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTC
196 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
** *
144893382 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* *
144893447 TGTTTGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
144893512 TTTCAATTTTTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
144893577 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
196 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* *
144893622 AAAAATCAACTCATATTGCGAAATGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
144893687 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* *
144893752 TTTCAATTTCTGTTCTTCAATTTCTGTTCATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
144893817 TTGAGCCTCAGGACACGCAGAGGTATTTTTAAATTTCTG-TTTTC
196 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* * *
144893861 AAAAATCGACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
*
144893926 TGTTTGTCAAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
144893991 TTTCAATTTCTGTTCTTT-AATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCAAGAGGTGA
131 TTTCAATTTCTGTT-TTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
*
144894055 GTTGAGCCTCAGGACATGCTGAGGTATTTTTAAATTTCTGTTTTTC
195 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
144894101 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
144894166 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* *
144894231 TTTCAATTTCTATTCTTCAATTTCTGTTCGT--AAAAAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
144894294 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
196 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* *
144894339 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATATCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
*
144894404 TCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGT
64 TCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
* *
144894469 CTTTTTAATTTCTGCTTTTCAATTTCTGTT
129 CTTTTCAATTTCTGTTTTTCAATTTCTGTT
144894499 TTTTCAATTT
Statistics
Matches: 1048, Mismatches: 56, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
232 143 0.14
234 1 0.00
238 75 0.07
239 280 0.27
240 549 0.52
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (240 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
Found at i:144893723 original size:73 final size:73
Alignment explanation
Indices: 144893548--144893765 Score: 319
Period size: 73 Copynumber: 2.9 Consensus size: 73
144893538 TTCGTAAAAA
* *
144893548 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
144893613 CTGTTTTTC
65 CTGTTTGTC
* * *
144893622 AAAAATCAACTCATATTGCGAAATGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
144893687 TGTTTGTC
66 TGTTTGTC
* * * *
144893695 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
144893760 TCTGTT
64 TCTGTT
144893766 CTTCAATTTC
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
73 53 0.41
74 51 0.40
75 25 0.19
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:144893772 original size:14 final size:14
Alignment explanation
Indices: 144893753--144893780 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
144893743 CTGAGGTCTT
144893753 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
144893767 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
144893781 ATAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:144893972 original size:73 final size:72
Alignment explanation
Indices: 144893788--144894004 Score: 290
Period size: 73 Copynumber: 3.0 Consensus size: 72
144893778 TTCATAAAAA
* * * *
144893788 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCAGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTA-TTTTCAATTT
144893853 CTGTTTTC
65 CTGTTTTC
* * *
144893861 AAAAATCGACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAATTTC
144893926 TGTTTGTC
66 TGTTT-TC
* * * * *
144893934 AAAAATTAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACAAGCTGAGGTATTTTCAATT
144893999 TCTGTT
64 TCTGTT
144894005 CTTTAATTTC
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
72 14 0.11
73 87 0.69
75 25 0.20
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAAGCTGAGGTATTTTCAATTTC
TGTTTTC
Found at i:144894040 original size:479 final size:475
Alignment explanation
Indices: 144893150--144894498 Score: 2215
Period size: 479 Copynumber: 2.8 Consensus size: 475
144893140 GATTTTCAAA
* ** * *
144893150 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
** * * * * * *
144893215 TGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTAT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
144893280 TTTCAATTTCTGGTT-TTCAATTTCTGTT-T---TAAAATCAACTCATATTGCGAGAGGTGAGTT
131 TTTCAATTTCT-GTTCTTCAATTTCTGTTCTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
144893340 GAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAG
195 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTT-TCAAAAATCAACTCATATTGCGAG
** * * *
144893404 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGTTTGTAAAAAATCAACTCAT
259 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCAT
*
144893469 ATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTTTGTTTTTCAATT
324 ATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTT-AATT
*
144893534 TCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
388 TCTGTTCGTAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
144893599 GTATTTTTAAATTTCTGTTTTTC
453 GTATTTTTAAATTTCTGTTTTTC
* *
144893622 AAAAATCAACTCATATTGCGAAATGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
144893687 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
144893752 TTTCAATTTCTGTTCTTCAATTTCTGTTCATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTCTTCAATTTCTGTTC-T--AAAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
144893817 TTGAGCCTCAGGACACGCAGAGGTATTTTTAAATTTCTGTTTTCAAAAATCGACTCATATTGCGA
193 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTCAAAAATCAACTCATATTGCGA
* * *
144893882 GAGGTGAGCTGAGCCTCGGGACAAGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTTA
258 GAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCA
144893947 TATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTTAAT
323 TATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTT-TTTAAT
*
144894012 TTCTGTTCGTAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGCTGA
387 TTCTGTTCGTAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGA
144894077 GGTATTTTTAAATTTCTGTTTTTC
452 GGTATTTTTAAATTTCTGTTTTTC
144894101 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
144894166 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
144894231 TTTCAATTTCTATTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 TTTCAATTTCTGTTCTTCAATTTCTGTTC-TAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
144894296 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCG
195 GAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTG-TTTTC--AAAAATCAACTCATATTGCG
* *
144894361 AAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATATCAATTTCTGTTTGTCAAAAATTAACTC
257 AGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTC
* * *
144894426 ATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTTTTCAA
322 ATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG-TTTTTAA
144894491 TTTCTGTT
386 TTTCTGTT
144894499 TTTTCAATTT
Statistics
Matches: 818, Mismatches: 45, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
471 3 0.00
472 139 0.17
474 1 0.00
477 70 0.09
478 5 0.01
479 435 0.53
480 163 0.20
481 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (475 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
TTTCAATTTCTGTTCTTCAATTTCTGTTCTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTTTTAATTTCT
GTTCGTAAAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
TTTTTAAATTTCTGTTTTTC
Found at i:144894193 original size:73 final size:73
Alignment explanation
Indices: 144894027--144894241 Score: 322
Period size: 73 Copynumber: 2.9 Consensus size: 73
144894017 TTCGTAAAAA
* * *
144894027 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA-TTTTCAATTT
*
144894092 CTGTTTTTC
65 CTGTTTGTC
* *
144894101 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTC
144894166 TGTTTGTC
66 TGTTTGTC
* * *
144894174 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGTATTTTCAATT
144894239 TCT
64 TCT
144894242 ATTCTTCAAT
Statistics
Matches: 128, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 55 0.43
74 51 0.40
75 22 0.17
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:144894375 original size:76 final size:74
Alignment explanation
Indices: 144894249--144894490 Score: 301
Period size: 76 Copynumber: 3.2 Consensus size: 74
144894239 TCTATTCTTC
* *
144894249 AATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTG
144894314 AGGTATTTTT
65 AGGTATTTTT
* *
144894324 AAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCT
1 -AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCT
* * *
144894389 GAGGTAATATC
64 GAGGTATTTTT
* * *
144894400 AATTTCTGTTTGTC--AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGC
1 AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGC
*
144894463 TGAGGTCTTTTT
63 TGAGGTATTTTT
144894475 AATTTCTGCTTT-TCAA
1 AATTTCTG-TTTGTCAA
144894491 TTTCTGTTTT
Statistics
Matches: 143, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
72 2 0.01
73 35 0.24
75 36 0.25
76 70 0.49
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (74 bp):
AATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGA
GGTATTTTT
Found at i:144894492 original size:14 final size:15
Alignment explanation
Indices: 144894467--144894508 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
144894457 ACATGCTGAG
*
144894467 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
144894482 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
144894496 GTTTTTTCAATTT
1 GTCTTTTCAATTT
144894509 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:144894504 original size:15 final size:14
Alignment explanation
Indices: 144894470--144894519 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
144894460 TGCTGAGGTC
144894470 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
144894483 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
144894497 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
144894512 TTTTTCAA
1 TTTTTCAA
144894520 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:144895301 original size:30 final size:30
Alignment explanation
Indices: 144895265--144895439 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
144895255 ACTTTTCTCA
*
144895265 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* *
144895295 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
* * *
144895325 ACTAGCCACTCCTTTTTCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
*
144895355 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAACTCC
** *
144895385 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAACTCC
*
144895415 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
144895440 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:144896015 original size:2 final size:2
Alignment explanation
Indices: 144896008--144896081 Score: 57
Period size: 2 Copynumber: 38.5 Consensus size: 2
144895998 CTATATTACG
* * *
144896008 TA TA TA TA TA TA TA TA TA TA TA TT TA TA CTA T- TT TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
144896050 TA TC TT TA -A TA T- TA TA T- TA TT TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
144896082 TTTTTTCACA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
1 4 0.07
2 51 0.89
3 2 0.04
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (2 bp):
TA
Found at i:144896049 original size:61 final size:61
Alignment explanation
Indices: 144895936--144896081 Score: 138
Period size: 63 Copynumber: 2.4 Consensus size: 61
144895926 TTTTTGTTAT
* * *
144895936 TATTATATTTCTTA-ATATTATATTATATATATTCTTTTAATATATTAGGTATAT-T-TTAAA
1 TATTATATTACGTATATA-TATA-TATATATATTATTTTAATATATTAGGTATATATCTTAAA
* * * *
144895996 T-TCTATATTACGTATATATATATATATATATATATTTATACTATTTTATGTATATATCTTTAA
1 TAT-TATATTACGTATATATATATATATATAT-TATTT-TAATATATTAGGTATATATCTTAAA
**
144896059 TATTATATTATTTATATATATAT
1 TATTATATTACGTATATATATAT
144896082 TTTTTTCACA
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
59 10 0.14
60 18 0.26
61 17 0.24
62 1 0.01
63 23 0.33
64 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (61 bp):
TATTATATTACGTATATATATATATATATATTATTTTAATATATTAGGTATATATCTTAAA
Found at i:144896129 original size:20 final size:22
Alignment explanation
Indices: 144896104--144896146 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
144896094 TTATCTTATG
144896104 TATATATCTT-A-ACTATATTA
1 TATATATCTTAACACTATATTA
*
144896124 TATATATTTTAACACTATATTA
1 TATATATCTTAACACTATATTA
144896146 T
1 T
144896147 GTACATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 1 0.05
22 10 0.50
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TATATATCTTAACACTATATTA
Found at i:144896336 original size:16 final size:17
Alignment explanation
Indices: 144896312--144896356 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
144896302 TAATTATTGT
*
144896312 TATTCTAATATTTT-GA
1 TATTTTAATATTTTAGA
*
144896328 TATTTTAATATTTTATA
1 TATTTTAATATTTTAGA
*
144896345 TATTTTATTATT
1 TATTTTAATATT
144896357 CACATCATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTTTAATATTTTAGA
Found at i:144897530 original size:10 final size:10
Alignment explanation
Indices: 144897511--144897550 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
144897501 TGAAATTCTA
144897511 AAAGATAAAT
1 AAAGATAAAT
144897521 ACAA-ATAAAT
1 A-AAGATAAAT
144897531 AAAGATAAAT
1 AAAGATAAAT
144897541 AAAGATAAAT
1 AAAGATAAAT
144897551 GAAAATACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 24 0.86
11 2 0.07
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:144900056 original size:41 final size:40
Alignment explanation
Indices: 144899994--144900243 Score: 229
Period size: 41 Copynumber: 6.1 Consensus size: 40
144899984 ACGCCACTAT
* *
144899994 AAGTC-GAGAAATAGCGACGTTTTT-CAAGAAACGACGCAAA
1 AAGTCTGAGAATTAGCGGCGTTTTTGCAA-AAACG-CGCAAA
*
144900034 AAGTCTGAGAATTAGCAGCGTTTTT-CAAGAAACGCCGCAAA
1 AAGTCTGAGAATTAGCGGCGTTTTTGCAA-AAACG-CGCAAA
* * * *
144900075 AAGTCTGAGAATTCGCGGCATTTTTCCAAAAACGCAGCCAA
1 AAGTCTGAGAATTAGCGGCGTTTTTGCAAAAACGC-GCAAA
* * *
144900116 AAGTCTGAGCATTAGCGGCATTTTTAG-AAAAACGCTGCCAA
1 AAGTCTGAGAATTAGCGGCGTTTTT-GCAAAAACGC-GCAAA
* ** * *
144900157 AAGTCTGAGTATTAGCGGCGTTTTTGGTAAAACGTTGCCAA
1 AAGTCTGAGAATTAGCGGCGTTTTTGCAAAAACG-CGCAAA
* * *
144900198 AAGTCTGAGTATTAGCAGCGTTTTTGTAAAAACGCCGCAAA
1 AAGTCTGAGAATTAGCGGCGTTTTTGCAAAAACG-CGCAAA
144900239 AAGTC
1 AAGTC
144900244 CAAAACGCCG
Statistics
Matches: 182, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
40 7 0.04
41 172 0.95
42 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (40 bp):
AAGTCTGAGAATTAGCGGCGTTTTTGCAAAAACGCGCAAA
Found at i:144900427 original size:7 final size:7
Alignment explanation
Indices: 144900417--144900442 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
144900407 TGGGTTTGAG
144900417 GTTTAGT
1 GTTTAGT
144900424 GTTTAGT
1 GTTTAGT
144900431 GTTTAGT
1 GTTTAGT
144900438 GTTTA
1 GTTTA
144900443 TGATCTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (7 bp):
GTTTAGT
Found at i:144901219 original size:14 final size:14
Alignment explanation
Indices: 144901177--144901220 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
144901167 GCGGTATTAA
144901177 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
*
144901191 TGG-TTAGGGGTTAG
1 -GGTTTAAGGGTTAG
*
144901205 GGTTTAAGGGATAG
1 GGTTTAAGGGTTAG
144901219 GG
1 GG
144901221 GATAAGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 2 0.08
14 21 0.84
15 2 0.08
ACGTcount: A:0.20, C:0.00, G:0.48, T:0.32
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:144901579 original size:22 final size:22
Alignment explanation
Indices: 144901554--144901607 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
144901544 TATCTAGAAT
144901554 TTAGGGTTTAAT-GTTTATAAGG
1 TTAGGGTTTAATGGTTTA-AAGG
* *
144901576 TTAGGGTTT-ATGGTTTAGAGT
1 TTAGGGTTTAATGGTTTAAAGG
144901597 TTAGGGTTTAA
1 TTAGGGTTTAA
144901608 GATTTAGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (22 bp):
TTAGGGTTTAATGGTTTAAAGG
Found at i:144901592 original size:7 final size:7
Alignment explanation
Indices: 144901576--144901624 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
144901566 GTTTATAAGG
144901576 TTAGGGT
1 TTAGGGT
*
144901583 TTATGGT
1 TTAGGGT
*
144901590 TTAGAGT
1 TTAGGGT
144901597 TTAGGGT
1 TTAGGGT
* *
144901604 TTAAGAT
1 TTAGGGT
144901611 TTAGGGT
1 TTAGGGT
144901618 TTAGGGT
1 TTAGGGT
144901625 CTGATTTTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (7 bp):
TTAGGGT
Found at i:144901602 original size:21 final size:21
Alignment explanation
Indices: 144901548--144901624 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
144901538 ATTTAGTATC
*
144901548 TAGAATTTAGGGTTTAAT-GTT
1 TAGAGTTTAGGGTTT-ATGGTT
* *
144901569 TATAAGGTTAGGGTTTATGGTT
1 TA-GAGTTTAGGGTTTATGGTT
* *
144901591 TAGAGTTTAGGGTTTAAGATT
1 TAGAGTTTAGGGTTTATGGTT
*
144901612 TAGGGTTTAGGGT
1 TAGAGTTTAGGGT
144901625 CTGATTTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 31 0.67
22 15 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (21 bp):
TAGAGTTTAGGGTTTATGGTT
Found at i:144903050 original size:25 final size:26
Alignment explanation
Indices: 144903022--144903077 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
144903012 AATTTTTTTA
* *
144903022 ATTAAT-CGAAATTTTTTTATCTAAT
1 ATTAATCCGAAATTTTTATATATAAT
* *
144903047 ATT-ATCCTAAATTTTTATATATTAT
1 ATTAATCCGAAATTTTTATATATAAT
144903072 ATTAAT
1 ATTAAT
144903078 TTAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 2 0.08
25 21 0.84
26 2 0.08
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
ATTAATCCGAAATTTTTATATATAAT
Found at i:144905041 original size:9 final size:9
Alignment explanation
Indices: 144904978--144905114 Score: 103
Period size: 9 Copynumber: 14.6 Consensus size: 9
144904968 ATTGATCATT
*
144904978 ACTTAAATA
1 ACTTACATA
*
144904987 AGTTACATA
1 ACTTACATA
* **
144904996 ACTCATGTA
1 ACTTACATA
144905005 ACTTACATA
1 ACTTACATA
*
144905014 ATTTACATAACA
1 ACTTACAT---A
*
144905026 ACCTACATA
1 ACTTACATA
144905035 ACTTACATA
1 ACTTACATA
144905044 ACTTACATA
1 ACTTACATA
* *
144905053 ATTTATATA
1 ACTTACATA
*
144905062 ACTCACATA
1 ACTTACATA
* *
144905071 ACGTATATAACA
1 AC-T-TA-CATA
144905083 ACTTACATA
1 ACTTACATA
*
144905092 ACTCACATA
1 ACTTACATA
144905101 ACTTACATA
1 ACTTACATA
144905110 ACTTA
1 ACTTA
144905115 ACTAATACAT
Statistics
Matches: 97, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
9 81 0.84
10 3 0.03
11 2 0.02
12 11 0.11
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:144905052 original size:57 final size:57
Alignment explanation
Indices: 144904978--144905112 Score: 171
Period size: 57 Copynumber: 2.4 Consensus size: 57
144904968 ATTGATCATT
* * * * **
144904978 ACTTAAATAAGTTACATAACTCATGTAACTTACATAATTTACATAACAACCTACATA
1 ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
* * * *
144905035 ACTTACATAACTTACATAATTTATATAACTCACATAACGTATATAACAACTTACATA
1 ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
*
144905092 ACTCACATAACTTACATAACT
1 ACTTACATAACTTACATAACT
144905113 TAACTAATAC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 66 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (57 bp):
ACTTACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACCTACATA
Found at i:144910703 original size:21 final size:21
Alignment explanation
Indices: 144910679--144910737 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
144910669 TCTAGCCGAT
*
144910679 GCAGCAGAGAGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGCG
144910700 GCAGCAGCGAGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGCG
*
144910721 GCAGCAGCGAGAGAGGC
1 GCAGCAGCGAGGGAGGC
144910738 GGAGCAGAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.22, G:0.51, T:0.00
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGCG
Found at i:144911359 original size:87 final size:86
Alignment explanation
Indices: 144911262--144911489 Score: 221
Period size: 87 Copynumber: 2.7 Consensus size: 86
144911252 TGCAAACAAA
* *
144911262 CGCCGCTAAAGGTCCG-CACTTTTAGCGGCGCTT-TTCCCGAAAACGCCGCTAAAGGTCTGCACC
1 CGCCGCTAAAGGTACGTCA-TTTTAACGGCGCTTGTTCCC-AAAACGCCGCTAAAGGTCTGCACC
* *
144911325 TTCAGCGGCGTTTTTTTCGGTAAG
64 TTCAACAGCG-TTTTTTCGGTAAG
* * * ** * *
144911349 CGCCGCTAAAGGTATGTGATTTTAACGGCGTTTGTTTGCTAAGCGCCGCTAAAGGTCTGCACCTT
1 CGCCGCTAAAGGTACGTCATTTTAACGGCGCTTGTTCCCAAAACGCCGCTAAAGGTCTGCACCTT
* *
144911414 TAACAGCGTTTTTTGGGTAAG
66 CAACAGCGTTTTTTCGGTAAG
* * * ***
144911435 CGCCGCTAAAGGTATGTGATTTTAGCGGCG-TT-TATGGTAAAACGCCGCTAAAGGT
1 CGCCGCTAAAGGTACGTCATTTTAACGGCGCTTGT-TCCCAAAACGCCGCTAAAGGT
144911490 ATCTACTTTT
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
84 1 0.01
85 19 0.16
86 41 0.34
87 55 0.46
88 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (86 bp):
CGCCGCTAAAGGTACGTCATTTTAACGGCGCTTGTTCCCAAAACGCCGCTAAAGGTCTGCACCTT
CAACAGCGTTTTTTCGGTAAG
Found at i:144911466 original size:43 final size:43
Alignment explanation
Indices: 144911065--144911510 Score: 305
Period size: 43 Copynumber: 10.3 Consensus size: 43
144911055 AATCTGTAAA
* * * * * *
144911065 TTTAGCGGCGTTTGTGGGGAAAGCACCGCTAAAGGACTCTACT
1 TTTAGCGGCGTTTTTTGGGTAAGCGCCGCTAAAGGTCTGTACT
* *
144911108 TTTAGCGGCG-TTTGTGGATAAAGCGCCGCTAAAAGGTCTGTACT
1 TTTAGCGGCGTTTTTTGGGT-AAGCGCCGCT-AAAGGTCTGTACT
* * * **
144911152 TTTGGCGGCG-TTTTTGGTGTAAGCGCCGTTATAGGTCTGTAAA
1 TTTAGCGGCGTTTTTTGG-GTAAGCGCCGCTAAAGGTCTGTACT
** * *
144911195 TTTAGTAG-TTTTTTTGGGCTAAAGCTCCGCTAAAGGTCTGTACT
1 TTTAGCGGCGTTTTTTGGG-T-AAGCGCCGCTAAAGGTCTGTACT
* ****** * * *
144911239 TTTAGCGGCGCTTTGCAAACAAACGCCGCTAAAGGTCCGCACT
1 TTTAGCGGCGTTTTTTGGGTAAGCGCCGCTAAAGGTCTGTACT
* *** * * * *
144911282 TTTAGCGGCGCTTTTCCCGAAAACGCCGCTAAAGGTCTGCACC
1 TTTAGCGGCGTTTTTTGGGTAAGCGCCGCTAAAGGTCTGTACT
* * *
144911325 TTCAGCGGCGTTTTTTTCGGTAAGCGCCGCTAAAGGTATGTGA-T
1 TTTAGCGGCG-TTTTTTGGGTAAGCGCCGCTAAAGGTCTGT-ACT
* * * *
144911369 TTTAACGGCGTTTGTTT-GCTAAGCGCCGCTAAAGGTCTGCACC
1 TTTAGCGGCGTTT-TTTGGGTAAGCGCCGCTAAAGGTCTGTACT
* * *
144911412 TTTAACAGCGTTTTTTGGGTAAGCGCCGCTAAAGGTATGTGA-T
1 TTTAGCGGCGTTTTTTGGGTAAGCGCCGCTAAAGGTCTGT-ACT
* * * *
144911455 TTTAGCGGCG-TTTAT-GGTAAAACGCCGCTAAAGGTATCTACT
1 TTTAGCGGCGTTTTTTGGGT-AAGCGCCGCTAAAGGTCTGTACT
144911497 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
144911511 GCCTTTCAAA
Statistics
Matches: 317, Mismatches: 70, Indels: 32
0.76 0.17 0.08
Matches are distributed among these distances:
41 4 0.01
42 42 0.13
43 172 0.54
44 94 0.30
45 5 0.02
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTTGGGTAAGCGCCGCTAAAGGTCTGTACT
Found at i:144912885 original size:19 final size:19
Alignment explanation
Indices: 144912840--144912896 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
144912830 AAATTACAAA
*
144912840 AAAAATTTAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
* *
144912859 TAATATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
144912878 AAAAATTCTAAAAT-TTTAT
1 AAAAATTC-AAAATATTTAT
144912897 TTTTAAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
18 4 0.13
19 22 0.71
20 5 0.16
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:144912898 original size:23 final size:24
Alignment explanation
Indices: 144912871--144912915 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
144912861 ATATTCAAAA
*
144912871 TATTTATAAAA-ATTCTAAAATTT
1 TATTTATAAAATATTATAAAATTT
*
144912894 TATTTTTAAAATATTATAAAAT
1 TATTTATAAAATATTATAAAAT
144912916 ATTTCTAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TATTTATAAAATATTATAAAATTT
Found at i:144921927 original size:3 final size:3
Alignment explanation
Indices: 144921914--144921970 Score: 96
Period size: 3 Copynumber: 18.3 Consensus size: 3
144921904 ATATAATGAA
144921914 AAT ATAT AAT AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
144921961 AAT AAT AAT A
1 AAT AAT AAT A
144921971 TGAAAATACA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:144924512 original size:219 final size:213
Alignment explanation
Indices: 144924167--144924705 Score: 657
Period size: 219 Copynumber: 2.4 Consensus size: 213
144924157 TCAATTCATT
* * * * * *
144924167 TCTCGCAATATGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGGGCTCAACT
1 TCTCGCAATATGAGTTAATTTTGAAACATAAACTAAAAATACCTCAACGTGTCCTGGGCTCAACT
*
144924232 CACCTCTCGCAATATGAGCTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CACCTCTCGCAATATGAACTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
144924297 CAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAGCGTGA
131 CAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAGCGTGA
144924362 CCTGAGGCTTGACTCACC
196 CCTGAGGCTTGACTCACC
*
144924380 TCTCGCAATATGAGTTAAAATTCTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGC
1 TCTCGCAATATGAGTT--AATT-TTGAAACATAAACTAAAAATACCTCAACGTGT--CCTG-GGC
** * * *
144924445 TCAACTCATTTCTCGCAATATGAATTGATTTTTGAACATAAATTGAAATTACCTCAGCGTGTCTT
60 TCAACTCACCTCTCGCAATATGAACTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTT
144924510 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAAGTAGAAA
125 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAA-T------T--AAA
* * ** *
144924575 TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACT
181 ---AACAT--CTCAGCGTGACCTGAGGCTTGACTCACC
* * * *
144924613 TCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGT-CTCGAGGCTCA
1 TCTCGCAATATGAGTT-AATTTTGAAACATAAACTAAAAATACCTCAACGTGTCCT-G-GGCTCA
*
144924677 ACTCACCTCTCGCAATATGAGCTGATTTT
63 ACTCACCTCTCGCAATATGAACTGATTTT
144924706 CTTGGAAAAC
Statistics
Matches: 277, Mismatches: 28, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
213 16 0.06
215 3 0.01
216 27 0.10
218 3 0.01
219 113 0.41
220 1 0.00
226 1 0.00
228 5 0.02
229 33 0.12
231 32 0.12
232 3 0.01
233 40 0.14
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (213 bp):
TCTCGCAATATGAGTTAATTTTGAAACATAAACTAAAAATACCTCAACGTGTCCTGGGCTCAACT
CACCTCTCGCAATATGAACTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
CAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAGCGTGA
CCTGAGGCTTGACTCACC
Found at i:144924547 original size:70 final size:70
Alignment explanation
Indices: 144924121--144924550 Score: 466
Period size: 70 Copynumber: 6.0 Consensus size: 70
144924111 TCAATTTTCT
* * * * ** *
144924121 AACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAATTCATTTCTCGCAATATGAGTTGAT
1 AACATAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
144924186 TTTGG
66 TTTTG
* * * *
144924191 AACATAAATTGAAATTACCTCAACGTGTCTTG-GGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACATAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
144924255 TTTGG
66 TTTTG
* * * *
144924260 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACATAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
144924325 TTTTG
66 TTTTG
* * * * ** *
144924330 AAACAACAGGAATTAAAAACATCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGT
1 -AAC-ATA--AATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
* *
144924395 TAAAATTCTTG
62 T--GATTTTTG
* ** **
144924406 AAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATT
1 -AACATAAATTAAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
144924471 GATTTTTG
63 GATTTTTG
* * *
144924479 AACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACATAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
144924544 TTTTG
66 TTTTG
144924549 AA
1 AA
144924551 ACAACAGGAA
Statistics
Matches: 306, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
69 65 0.21
70 100 0.33
71 3 0.01
72 27 0.09
73 24 0.08
74 46 0.15
75 31 0.10
76 10 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (70 bp):
AACATAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTTG
Found at i:144924688 original size:71 final size:71
Alignment explanation
Indices: 144924572--144924705 Score: 207
Period size: 71 Copynumber: 1.9 Consensus size: 71
144924562 TAAAAAGTAG
* * *
144924572 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
144924637 AAACAT
66 AAACAT
* *
144924643 AAATTGAAATTACCTCAACGTG-TCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCT-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
144924706 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 2 0.04
71 55 0.96
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:144924749 original size:160 final size:158
Alignment explanation
Indices: 144924418--144924796 Score: 616
Period size: 160 Copynumber: 2.4 Consensus size: 158
144924408 ACATAAACTA
* * *
144924418 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAACA
1 AAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACA
* *
144924483 TAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
64 TAAATTGAAATTACCTCAACGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
*
144924548 GAAACAACAGGAATTAAAAAGTAGAAATTG
129 GAAACAACAGGAATTAAAAAGCAGAAATTG
144924578 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACAT
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AACAT
144924643 AAATTGAAATTACCTCAACGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
65 AAATTGAAATTACCTCAACGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT-T
* * *
144924708 TGGAA-AACATGAATTAAGAAGCAGAAATTG
128 TGAAACAACAGGAATTAAAAAGCAGAAATTG
*
144924738 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCCATATGAGTTGATTTTTG
1 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
144924797 GAAAAAACAA
Statistics
Matches: 206, Mismatches: 10, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
158 43 0.21
159 62 0.30
160 96 0.47
161 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (158 bp):
AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACATA
AATTGAAATTACCTCAACGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACAACAGGAATTAAAAAGCAGAAATTG
Found at i:144945111 original size:29 final size:29
Alignment explanation
Indices: 144945076--144945149 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
144945066 GTTGTGAGAT
* *
144945076 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
144945105 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
144945134 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
144945150 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:144947382 original size:17 final size:18
Alignment explanation
Indices: 144947340--144947388 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
144947330 AGTTGAAAAG
144947340 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
144947359 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
144947376 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
144947389 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:144948276 original size:40 final size:40
Alignment explanation
Indices: 144948210--144948376 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
144948200 AAATTGAATG
* * *
144948210 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
144948249 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
144948289 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
144948329 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
144948369 ATATCCGG
1 ATATCCGG
144948377 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:144955388 original size:17 final size:18
Alignment explanation
Indices: 144955346--144955394 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
144955336 AGTTGAAAAG
144955346 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
144955365 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
144955382 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
144955395 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:144956350 original size:40 final size:39
Alignment explanation
Indices: 144956244--144956372 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
144956234 TGCTGGAAAT
* * * *
144956244 TATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
144956284 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
144956324 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
144956364 TATATCCGG
1 TATATCCGG
144956373 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.04
40 72 0.94
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:144960107 original size:20 final size:22
Alignment explanation
Indices: 144960067--144960108 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
144960057 AATATTAATA
*
144960067 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
144960089 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
144960109 CAAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:144960208 original size:15 final size:15
Alignment explanation
Indices: 144960188--144960244 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
144960178 ATTCAATATT
144960188 AATATTTTAATAATA
1 AATATTTTAATAATA
*
144960203 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
144960222 AATATATTAATAATA
1 AATATTTTAATAATA
*
144960237 AATGTTTT
1 AATATTTT
144960245 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:144960713 original size:14 final size:13
Alignment explanation
Indices: 144960694--144960730 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
144960684 CAAGAAAAGT
144960694 AAATCATTTTCCA
1 AAATCATTTTCCA
144960707 GAAATCATTTTCCA
1 -AAATCATTTTCCA
144960721 AAAGTCATTT
1 AAA-TCATTT
144960731 CTGTGAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 3 0.14
14 19 0.86
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (13 bp):
AAATCATTTTCCA
Done.