Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 473 of 770
Found at i:146051636 original size:31 final size:29
Alignment explanation
Indices: 146051570--146051637 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
146051560 TTTTTAAATT
*
146051570 TTTATATAATTTATTTATTTTAAAGATTA
1 TTTATATAATTTATTTATTTTAAACATTA
* *
146051599 TATATATTATTTATTT-TTACTATAAACATTA
1 TTTATATAATTTATTTATT--T-TAAACATTA
146051630 TTTATATA
1 TTTATATA
146051638 TGTAAAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
28 2 0.06
29 14 0.45
30 1 0.03
31 14 0.45
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.57
Consensus pattern (29 bp):
TTTATATAATTTATTTATTTTAAACATTA
Found at i:146051690 original size:7 final size:7
Alignment explanation
Indices: 146051648--146051816 Score: 73
Period size: 7 Copynumber: 23.1 Consensus size: 7
146051638 TGTAAAAAAG
146051648 TTATTAT
1 TTATTAT
*
146051655 ATATTAT
1 TTATTAT
146051662 TT-TTAT
1 TTATTAT
146051668 TT-TTAT
1 TTATTAT
*
146051674 TTGTGTA-
1 TTAT-TAT
146051681 TTATTTAT
1 TTA-TTAT
146051689 TATATTAT
1 T-TATTAT
*
146051697 TTACATTTT
1 TT--ATTAT
146051706 ATTATATAT
1 -TTAT-TAT
*
146051715 TT-TGAT
1 TTATTAT
*
146051721 TTATACATT
1 TTAT-TA-T
146051730 TTATTAT
1 TTATTAT
* *
146051737 ATATCATT
1 TTATTA-T
146051745 TTATTAT
1 TTATTAT
*
146051752 ATA-TA-
1 TTATTAT
146051757 TTATTCAT
1 TTATT-AT
146051765 TATATTAT
1 T-TATTAT
146051773 TT-TTATT
1 TTATTA-T
146051780 TTATTAT
1 TTATTAT
*
146051787 ATATTAT
1 TTATTAT
*
146051794 ATAATTAT
1 -TTATTAT
146051802 TTATTAT
1 TTATTAT
146051809 TTATTAT
1 TTATTAT
146051816 T
1 T
146051817 ATGTAAATTA
Statistics
Matches: 124, Mismatches: 18, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
5 2 0.02
6 22 0.18
7 49 0.40
8 32 0.26
9 17 0.14
10 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (7 bp):
TTATTAT
Found at i:146051708 original size:19 final size:19
Alignment explanation
Indices: 146051684--146051788 Score: 67
Period size: 19 Copynumber: 5.5 Consensus size: 19
146051674 TTGTGTATTA
146051684 TTTATTATATTATTTACAT
1 TTTATTATATTATTTACAT
**
146051703 TTTATTATA-TATTTTGAT
1 TTTATTATATTATTTACAT
* *
146051721 TTATACATTTTATTATATATCAT
1 TT-T--ATTATATTATTTA-CAT
146051744 TTTATTATA-TATATT--A-
1 TTTATTATATTAT-TTACAT
* **
146051760 TTCATTATATTATTTTTAT
1 TTTATTATATTATTTACAT
146051779 TTTATTATAT
1 TTTATTATAT
146051789 ATTATATAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
16 10 0.15
17 4 0.06
18 10 0.15
19 22 0.33
20 6 0.09
21 5 0.08
22 5 0.08
23 4 0.06
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTATTATATTATTTACAT
Found at i:146051708 original size:26 final size:26
Alignment explanation
Indices: 146051679--146051795 Score: 107
Period size: 26 Copynumber: 4.6 Consensus size: 26
146051669 TTTATTTGTG
*
146051679 TATTATTTATTATATTATTTACATTT
1 TATTATATATTATATTATTTACATTT
* *
146051705 TATTATATATTTTGATT-TATACATTT
1 TATTATATATTAT-ATTATTTACATTT
* * * *
146051731 TATTATATATCATTTTA-TTATA-TA
1 TATTATATATTATATTATTTACATTT
**
146051755 TATTAT-TCATTATATTATTTTTATTT
1 TATTATAT-ATTATATTATTTACATTT
146051781 TATTATATATTATAT
1 TATTATATATTATAT
146051796 AATTATTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
23 1 0.01
24 14 0.19
25 9 0.12
26 44 0.61
27 4 0.06
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATATATTATATTATTTACATTT
Found at i:146051710 original size:14 final size:14
Alignment explanation
Indices: 146051691--146051769 Score: 83
Period size: 14 Copynumber: 5.6 Consensus size: 14
146051681 TTATTTATTA
*
146051691 TATTATTTACATTT
1 TATTATATACATTT
146051705 TATTATAT--ATTT
1 TATTATATACATTT
146051717 TGATT-TATACATTT
1 T-ATTATATACATTT
146051731 TATTATATATCATTT
1 TATTATATA-CATTT
*
146051746 TATTATATATATTAT
1 TATTATATACATT-T
146051761 TCATTATAT
1 T-ATTATAT
146051770 TATTTTTATT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
12 8 0.14
13 6 0.11
14 19 0.34
15 16 0.29
16 7 0.12
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (14 bp):
TATTATATACATTT
Found at i:146051774 original size:29 final size:28
Alignment explanation
Indices: 146051649--146051860 Score: 86
Period size: 29 Copynumber: 7.4 Consensus size: 28
146051639 GTAAAAAAGT
146051649 TATTATATATTATT-T-TTATTTTTATT-
1 TATTAT-TATTATTATATTATTTTTATTA
* ** *
146051675 TGTGTATTATTTATTATATTATTTACATTT
1 TAT-TATTA-TTATTATATTATTTTTATTA
146051705 TATTATATATT-TTGAT-TTATACATTTTATTA
1 TATTAT-TATTATT-ATATTAT---TTTTATTA
*
146051736 TATATCATT-TTATTATATATATTATTCATTA
1 TAT-T-ATTATTATTATAT-TATT-TTTATTA
* * *
146051767 TATTATTTTTATTTTATTA--TATATTA
1 TATTATTATTATTATATTATTTTTATTA
* *
146051793 TATAATTATTTATTAT-TTATTATTATGTA
1 TATTATTA-TTATTATATTATTTTTAT-TA
* *
146051822 AATTATTATTA-AATATTGCATTTTTA-TA
1 TATTATTATTATTATATT--ATTTTTATTA
*
146051850 TATCATTATTA
1 TATTATTATTA
146051861 AAAATTTAGT
Statistics
Matches: 140, Mismatches: 22, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
26 18 0.13
27 16 0.11
28 26 0.19
29 29 0.21
30 20 0.14
31 21 0.15
32 5 0.04
33 5 0.04
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (28 bp):
TATTATTATTATTATATTATTTTTATTA
Found at i:146051838 original size:25 final size:25
Alignment explanation
Indices: 146051788--146051838 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
146051778 TTTTATTATA
**
146051788 TATTATATAATTATTTATTATTTAT
1 TATTATATAATTATTTATTAAATAT
*
146051813 TATTATGTAAATTA-TTATTAAATAT
1 TATTATAT-AATTATTTATTAAATAT
146051838 T
1 T
146051839 GCATTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TATTATATAATTATTTATTAAATAT
Found at i:146056423 original size:40 final size:40
Alignment explanation
Indices: 146056386--146056571 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
146056376 GCTACTCGTT
*
146056386 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
146056426 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
146056466 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
146056506 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
146056547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
146056572 CATCATTCAA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:146059113 original size:198 final size:198
Alignment explanation
Indices: 146058775--146059179 Score: 783
Period size: 198 Copynumber: 2.0 Consensus size: 198
146058765 CCAAGATTTA
146058775 TTGGATCGTATGAGATCATTGAGAGAATTGGTCCTGTAGCATACATATTAGCTTTACCTCCCGAA
1 TTGGATCGTATGAGATCATTGAGAGAATTGGTCCTGTAGCATACATATTAGCTTTACCTCCCGAA
146058840 CTTGAGAAAATTTCACAATATTTTTCATGTTTCTATGATGAGATGGTATAGATCAGTTCCTTTGC
66 CTTGAGAAAATTTCACAATATTTTTCATGTTTCTATGATGAGATGGTATAGATCAGTTCCTTTGC
146058905 ATGTAATTACTTCTAGTGAAATTGAGTTACAACCAAATTTTTCGTGTTCTGAAGAATCGATAAAA
131 ATGTAATTACTTCTAGTGAAATTGAGTTACAACCAAATTTTTCGTGTTCTGAAGAATCGATAAAA
146058970 ATT
196 ATT
* *
146058973 TTGGATCGTATGAGATCATTGAGAGAATTGGTCCTGTAGCATACGTATTAGCTTTACCTCCTGAA
1 TTGGATCGTATGAGATCATTGAGAGAATTGGTCCTGTAGCATACATATTAGCTTTACCTCCCGAA
146059038 CTTGAGAAAATTTCACAATATTTTTCATGTTTCTATGATGAGATGGTATAGATCAGTTCCTTTGC
66 CTTGAGAAAATTTCACAATATTTTTCATGTTTCTATGATGAGATGGTATAGATCAGTTCCTTTGC
146059103 ATGTAATTACTTCTAGTGAAATTGAGTTACAACCAAATTTTTCGTGTTCTGAAGAATCGATAAAA
131 ATGTAATTACTTCTAGTGAAATTGAGTTACAACCAAATTTTTCGTGTTCTGAAGAATCGATAAAA
146059168 ATT
196 ATT
*
146059171 TTGGCTCGT
1 TTGGATCGT
146059180 GAAGGGAAGA
Statistics
Matches: 204, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 204 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (198 bp):
TTGGATCGTATGAGATCATTGAGAGAATTGGTCCTGTAGCATACATATTAGCTTTACCTCCCGAA
CTTGAGAAAATTTCACAATATTTTTCATGTTTCTATGATGAGATGGTATAGATCAGTTCCTTTGC
ATGTAATTACTTCTAGTGAAATTGAGTTACAACCAAATTTTTCGTGTTCTGAAGAATCGATAAAA
ATT
Found at i:146064277 original size:27 final size:24
Alignment explanation
Indices: 146064255--146064313 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
146064245 TGCTTAGCAC
* *
146064255 ATTTTATGGATGATTTTTCCTTAG
1 ATTTGATGAATGATTTTTCCTTAG
*
146064279 ATTTGGTGAATGATTTTTCCTTAG
1 ATTTGATGAATGATTTTTCCTTAG
*
146064303 ATTTGGTGAAT
1 ATTTGATGAAT
146064314 TCGATGCTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.51
Consensus pattern (24 bp):
ATTTGATGAATGATTTTTCCTTAG
Found at i:146064291 original size:24 final size:24
Alignment explanation
Indices: 146064264--146064313 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
146064254 CATTTTATGG
146064264 ATGATTTTTCCTTAGATTTGGTGA
1 ATGATTTTTCCTTAGATTTGGTGA
146064288 ATGATTTTTCCTTAGATTTGGTGA
1 ATGATTTTTCCTTAGATTTGGTGA
146064312 AT
1 AT
146064314 TCGATGCTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.08, G:0.20, T:0.50
Consensus pattern (24 bp):
ATGATTTTTCCTTAGATTTGGTGA
Found at i:146067234 original size:55 final size:51
Alignment explanation
Indices: 146067146--146067401 Score: 216
Period size: 55 Copynumber: 4.9 Consensus size: 51
146067136 CATTAGGGTT
* *
146067146 TAAGGATACCATGTAAGATCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAA
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAA
* * * * *
146067199 GGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACT-A
1 --TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAA
* *
146067251 TAAGGGAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGT--GTGTTCATAA
1 TAA-GG--A--TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGT-TTC-TAA
* * *
146067307 GGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAGTGGTAAGTTTC-AA
1 --TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAA
* * * *
146067359 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
146067402 GTACCTGCGT
Statistics
Matches: 166, Mismatches: 23, Indels: 30
0.76 0.11 0.14
Matches are distributed among these distances:
49 39 0.23
50 3 0.02
51 2 0.01
52 3 0.02
53 39 0.23
54 12 0.07
55 63 0.38
56 1 0.01
57 2 0.01
58 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (51 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAA
Found at i:146067353 original size:108 final size:109
Alignment explanation
Indices: 146067154--146067354 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 109
146067144 TTTAAGGATA
* * *
146067154 CCATGTAAGATCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGT-AGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
146067219 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGGAAAGGTC
65 CCATGTCAAGACATGGCAGTGATAAGTTACTATAAGGGAAAGGTC
*
146067264 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGT--GTGTTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAGGT-TTC-TAAGGCAAGGAAACCATGTAAG
*
146067326 ACCATGTCAAGACATGGCAGTGGTAAGTT
64 ACCATGTCAAGACATGGCAGTGATAAGTT
146067355 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
106 2 0.02
107 3 0.04
108 46 0.55
109 6 0.07
110 26 0.31
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAGTGATAAGTTACTATAAGGGAAAGGTC
Found at i:146076060 original size:47 final size:47
Alignment explanation
Indices: 146075994--146076134 Score: 273
Period size: 47 Copynumber: 3.0 Consensus size: 47
146075984 CCAAACATTG
146075994 TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
1 TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
146076041 TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
1 TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
*
146076088 TTTTATTCAAGCCATTTCTTCCTCATCATCTCCTATCATCACTATGT
1 TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
146076135 CATCAACATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.21, C:0.28, G:0.04, T:0.46
Consensus pattern (47 bp):
TTTTATTCAAGCCATTTCTTCCTTATCATCTCCTATCATCACTATGT
Found at i:146078269 original size:77 final size:78
Alignment explanation
Indices: 146078136--146078315 Score: 233
Period size: 77 Copynumber: 2.3 Consensus size: 78
146078126 TCGAATGATG
* *
146078136 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
146078200 GTGCGAGTTACTA
66 GTGCGAGTTACTA
* * **
146078213 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGAC-AAATCCGGACTAAGAT-CCGAAGGCAT
146078275 TTGTGCGAGTTACTA
64 TTGTGCGAGTTACTA
*
146078290 TAACCGGGCTATGTCCCGAAGGCATT
1 T--CCGGGCTAAGTCCCGAAGGCATT
146078316 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
76 15 0.17
77 54 0.60
79 9 0.10
80 12 0.13
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTA
Found at i:146078281 original size:40 final size:40
Alignment explanation
Indices: 146078136--146078317 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
146078126 TCGAATGATG
* * *
146078136 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
146078175 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT--A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
146078213 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
146078252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
146078293 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
146078318 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
37 23 0.18
38 11 0.09
39 34 0.27
40 56 0.44
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:146086273 original size:40 final size:39
Alignment explanation
Indices: 146086216--146086398 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
146086206 TCGAATGATG
* *
146086216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
146086256 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
146086295 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
146086333 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
146086373 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
146086399 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
37 14 0.11
38 21 0.16
39 22 0.17
40 63 0.49
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:146086354 original size:77 final size:80
Alignment explanation
Indices: 146086216--146086396 Score: 253
Period size: 77 Copynumber: 2.3 Consensus size: 80
146086206 TCGAATGATG
* *
146086216 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
146086281 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
146086295 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
146086357 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
146086373 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
146086397 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
76 1 0.01
77 42 0.46
78 25 0.27
79 23 0.25
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:146086428 original size:117 final size:117
Alignment explanation
Indices: 146086216--146086430 Score: 267
Period size: 117 Copynumber: 1.8 Consensus size: 117
146086206 TCGAATGATG
*
146086216 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
** *
146086281 GTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
66 GAACGAGTTACTAATCCGGGCTAAACCCGAAGGCATTGTGCGAGTTACTAAA
* * * * *
146086333 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
* *
146086396 TTGAACGAG-TAGCTATATCC-GGTTAAATCCGAAGG
64 TTGAACGAGTTA-CTA-ATCCGGGCTAAACCCGAAGG
146086431 TACGTGATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
116 3 0.04
117 69 0.83
118 11 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (117 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAATCCGGGCTAAACCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:146090481 original size:42 final size:40
Alignment explanation
Indices: 146090365--146090485 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 40
146090355 ACACATAGTA
* *
146090365 TCATATCAATGCCATATCCCAGATATGGCCTTACATGGGATC
1 TCATATCAATGCCATATCCCAGATATGGTCTTACA--CGATC
* * * *
146090407 TCGTATCAATGCCAATAGCCCAGCTGTGGTCTTACACGACTCC
1 TCATATCAATGCC-ATATCCCAGATATGGTCTTACACGA-T-C
**
146090450 TCATATTGATGCCATATCCCAGATATGGTCTTACAC
1 TCATATCAATGCCATATCCCAGATATGGTCTTACAC
146090486 ATAATCTCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.03
42 33 0.52
43 29 0.45
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (40 bp):
TCATATCAATGCCATATCCCAGATATGGTCTTACACGATC
Found at i:146093790 original size:17 final size:19
Alignment explanation
Indices: 146093767--146093812 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
146093757 AAGAAGCATG
146093767 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
146093785 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
146093803 AATCATGCTC
1 AATCATGCTC
146093813 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:146100804 original size:40 final size:40
Alignment explanation
Indices: 146100759--146100925 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
146100749 CGGAATATAA
146100759 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
146100799 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
146100839 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
146100879 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
146100918 CCGGATAT
1 CCGGATAT
146100926 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:146100909 original size:80 final size:79
Alignment explanation
Indices: 146100759--146100925 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
146100749 CGGAATATAA
* *
146100759 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
146100824 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
146100839 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
146100901 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
146100918 CCGGATAT
1 CCGGATAT
146100926 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:146101774 original size:17 final size:19
Alignment explanation
Indices: 146101751--146101796 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
146101741 AAGAAGCATG
146101751 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
146101769 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
146101787 AATCATGCTC
1 AATCATGCTC
146101797 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:146107940 original size:66 final size:65
Alignment explanation
Indices: 146107792--146107942 Score: 153
Period size: 66 Copynumber: 2.3 Consensus size: 65
146107782 GTTTAGGAAC
* * * *
146107792 TTGAGAAGACCTAATATCTAGTTTAGGAGTTTGGAAAGACTCAATATATCATTTAAGATCTCGGG
1 TTGAGAAGA-CTGATATCTAGTTTAGGAGGTTGGAAAGACTCAATATAGCATTTAAGAGCTCGGG
146107857 A
65 A
* * * * * *
146107858 TTGAGAAGTCTAGATATCTCGTTTAGGAGGTTGTG-AAGACT-AGATATCGCGTTTAGGAGCTTG
1 TTGAGAAGACT-GATATCTAGTTTAGGAGGTTG-GAAAGACTCA-ATATAGCATTTAAGAGCTCG
146107921 GGA
63 GGA
146107924 TTGAGAAGACATGATATCT
1 TTGAGAAGAC-TGATATCT
146107943 TGTTCAGAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
65 3 0.04
66 65 0.93
67 2 0.03
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (65 bp):
TTGAGAAGACTGATATCTAGTTTAGGAGGTTGGAAAGACTCAATATAGCATTTAAGAGCTCGGGA
Found at i:146109418 original size:17 final size:17
Alignment explanation
Indices: 146109396--146109429 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
146109386 GATATGATAC
146109396 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
146109413 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
146109430 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:146109709 original size:22 final size:21
Alignment explanation
Indices: 146109674--146109749 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
146109664 AAAAGGTATC
* *
146109674 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
146109695 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
146109718 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
146109737 TGC-AATCATATCT
1 TACAAATCATATCT
146109750 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:146109808 original size:17 final size:19
Alignment explanation
Indices: 146109710--146109800 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
146109700 AATCATATCT
146109710 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
146109729 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
146109747 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
146109764 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
146109783 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
146109801 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:146110207 original size:45 final size:45
Alignment explanation
Indices: 146110156--146110349 Score: 246
Period size: 45 Copynumber: 4.3 Consensus size: 45
146110146 CGATATCTAC
* *
146110156 TATCTTTGATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * *
146110201 TATCTTTGATTTGCTCCCCGTCTAATATAGAGACGCTAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
146110246 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
146110290 TATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
146110335 CATCTTGGATCTGCT
1 TATCTTCGATCTGCT
146110350 TCGATGTAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 37 0.29
45 92 0.71
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:146110315 original size:89 final size:89
Alignment explanation
Indices: 146110164--146110333 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
146110154 ACTATCTTTG
*** *
146110164 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTTTGATTTGCTCCCCGTCTAATAT
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
*
146110229 AGAGACGCTAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* *
146110253 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
*
146110318 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
146110334 TCATCTTGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 73 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:146110492 original size:78 final size:78
Alignment explanation
Indices: 146110363--146111046 Score: 944
Period size: 78 Copynumber: 8.8 Consensus size: 78
146110353 ATGTAAACAC
** *
146110363 ATGAAGGTCAGATCTACTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
146110428 TGGATCTGTTTCA
66 TGGATCTGCTTCA
**
146110441 ATGAAGGTCCA-ATCTGTTATGTCTTTAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
146110505 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
*
146110519 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
146110584 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
146110597 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
146110661 TTGGATTTGCTTCA
65 TTGGATCTGCTTCA
* *
146110675 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
146110740 TAGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * * * **
146110753 ATGAAGGTCAGATTTGCTATGTCTTCGATCAGCTCTCTGCCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* *
146110818 TGGATCTACATCA
66 TGGATCTGCTTCA
* * ** *
146110831 ATGAAGGTCAGATCT-TCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCATT
1 ATGAAGGTCAGATCTGT-TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
146110895 TTGGATCTACTTCA
65 TTGGATCTGCTTCA
** *
146110909 ATGAAGGTCCA-ATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
146110973 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
** * * * **
146110987 ATGAAGGTCAGATCTACTATGTCTTCAATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
146111047 TTGTTTCTTC
Statistics
Matches: 545, Mismatches: 53, Indels: 16
0.89 0.09 0.03
Matches are distributed among these distances:
77 6 0.01
78 533 0.98
79 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:146112332 original size:17 final size:17
Alignment explanation
Indices: 146112284--146112332 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
146112274 TTCTATTCTA
* * *
146112284 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
146112301 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
146112319 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
146112333 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:146112591 original size:17 final size:16
Alignment explanation
Indices: 146112569--146112604 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
146112559 TATTATCATA
146112569 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
146112586 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
146112602 TAT
1 TAT
146112605 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:146112659 original size:2 final size:2
Alignment explanation
Indices: 146112654--146112700 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
146112644 GTTTTGTTTC
146112654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
146112696 -T AT AT
1 AT AT AT
146112701 TTCATAAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:146114182 original size:17 final size:17
Alignment explanation
Indices: 146114134--146114182 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
146114124 TCTATTCTAA
* * *
146114134 TTTAATTCTTTCTAAAT
1 TTTATTTCTTTTTAAAC
*
146114151 TTTATTTTATTTTTAAAC
1 TTTA-TTTCTTTTTAAAC
146114169 TTTATTTCTTTTTA
1 TTTATTTCTTTTTA
146114183 GATTATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATTTCTTTTTAAAC
Found at i:146114436 original size:17 final size:16
Alignment explanation
Indices: 146114414--146114449 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
146114404 TATTATCATA
146114414 TATTATTTTAAATTATG
1 TATTATTTTAAATT-TG
*
146114431 TATTATTTTACATTTG
1 TATTATTTTAAATTTG
146114447 TAT
1 TAT
146114450 ATACATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (16 bp):
TATTATTTTAAATTTG
Found at i:146116229 original size:25 final size:25
Alignment explanation
Indices: 146116201--146116248 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
146116191 TAGATATGGT
*
146116201 ATAATAATG-GAAATATAAATATAAG
1 ATAAT-ATGAGAAATAAAAATATAAG
146116226 ATAATATGAGAAATAAAAATATA
1 ATAATATGAGAAATAAAAATATA
146116249 GAAGTGACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27
Consensus pattern (25 bp):
ATAATATGAGAAATAAAAATATAAG
Found at i:146118281 original size:41 final size:42
Alignment explanation
Indices: 146118230--146118428 Score: 174
Period size: 41 Copynumber: 4.7 Consensus size: 42
146118220 CATCTTTGAT
* * *
146118230 CTGTTTCCCTACTGCTTA-TGGTTTTAGATCTGTAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAATTCAAC
* * ** *
146118271 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGT-CTTTGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAA-GATC-T-GTAATTCAAC
* * *
146118315 CTGCT-CCACTACTGCTTAAGGAG-ATAAGATCTGTAATT-AAC
1 CTGTTACC-CTACTGCTT-AGGGGTTTAAGATCTGTAATTCAAC
* *
146118356 CTGTTACCCTACTGCTTAGGGGATTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGT-AA--TTCAAC
146118401 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAG
146118429 GCTCTTTGTT
Statistics
Matches: 125, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
40 4 0.03
41 43 0.34
42 13 0.10
43 8 0.06
44 22 0.18
45 35 0.28
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAATTCAAC
Found at i:146118328 original size:85 final size:86
Alignment explanation
Indices: 146118180--146118383 Score: 272
Period size: 85 Copynumber: 2.4 Consensus size: 86
146118170 ATATTTAATT
* * *
146118180 TTCAGCCTGTTACCCTACTGTTTAGGGGATTAAGGCTTGTCATCTTTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGATTAAGGCTTGTCATCTTTGATCTGTCTCCCTACTGC
* ** *
146118245 TTATGG-TTTTAGATCTGTAA
66 TTAAGGAGATAAGATCTGTAA
* * *
146118265 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTTGATCTG-CTCCACTACT
1 TTCAACCTGTTACCCTACTGCTTAGGGGATTAAGGCTT-GTCATCTTTGATCTGTCTCC-CTACT
146118328 GCTTAAGGAGATAAGATCTGTAA
64 GCTTAAGGAGATAAGATCTGTAA
146118351 TT-AACCTGTTACCCTACTGCTTAGGGGATTAAG
1 TTCAACCTGTTACCCTACTGCTTAGGGGATTAAG
146118384 ATCTGTAAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
84 5 0.05
85 87 0.83
86 13 0.12
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGATTAAGGCTTGTCATCTTTGATCTGTCTCCCTACTGC
TTAAGGAGATAAGATCTGTAA
Found at i:146118416 original size:130 final size:128
Alignment explanation
Indices: 146118230--146118556 Score: 408
Period size: 130 Copynumber: 2.5 Consensus size: 128
146118220 CATCTTTGAT
* * * *
146118230 CTGTTTCCCTACTGCTTATGGTTTTAGATCTGTAA-TTCAACCTGTTACCCTACTGCTTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGATTAAGATCTGTAACTTCAGCCTGTTACCCTACTGCTTAGGGGT
* **
146118294 TTAAGGTTCTTCGTCTTT-GATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAA-TTAAC
66 TTAAGGCTCTTCGT-TTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTAAC
*
146118356 CTGTTACCCTACTGCTTAGGGGATTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTA-GGGATTAAGATCTGT-AA-CTTCAGCCTGTTACCCTACTGCTTAGG
* * **
146118421 GGTTTAAGGCTCTTTGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTGG
63 GGTTTAAGGCTCTTCGTTTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTAA
*
146118486 T
128 C
* * * * * *
146118487 CTGTTTCCCTACTGCTTAGGGCTTAAGACCTTCTGACATCAGCTTGTTACCCTACTGCTTAGGGG
1 CTGTTTCCCTACTGCTTAGGGATTAAGATC-TGTAACTTCAGCCTGTTACCCTACTGCTTAGGGG
*
146118552 GTTAA
65 TTTAA
146118557 AGCTTGGTAG
Statistics
Matches: 173, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
126 17 0.10
127 12 0.07
128 2 0.01
129 34 0.20
130 87 0.50
131 21 0.12
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (128 bp):
CTGTTTCCCTACTGCTTAGGGATTAAGATCTGTAACTTCAGCCTGTTACCCTACTGCTTAGGGGT
TTAAGGCTCTTCGTTTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTAAC
Found at i:146133983 original size:26 final size:27
Alignment explanation
Indices: 146133937--146133998 Score: 108
Period size: 26 Copynumber: 2.3 Consensus size: 27
146133927 TAAAATAAAA
146133937 AATAAAAAAGGGAAAAATTGGTAATGG
1 AATAAAAAAGGGAAAAATTGGTAATGG
*
146133964 AATAAAAAAGGG-AAAGTTGGTAATGG
1 AATAAAAAAGGGAAAAATTGGTAATGG
146133990 AATAAAAAA
1 AATAAAAAA
146133999 AAGTAAAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (27 bp):
AATAAAAAAGGGAAAAATTGGTAATGG
Found at i:146134006 original size:27 final size:26
Alignment explanation
Indices: 146133937--146134008 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
146133927 TAAAATAAAA
* *
146133937 AATAAAAAAGGGAAAAATTGGTAATGG
1 AATAAAAAAAGG-AAAGTTGGTAATGG
*
146133964 AATAAAAAAGGGAAAGTTGGTAATGG
1 AATAAAAAAAGGAAAGTTGGTAATGG
*
146133990 AATAAAAAAAAGTAAAGTT
1 AAT-AAAAAAAGGAAAGTT
146134009 TTTTTTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 16 0.39
27 25 0.61
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.19
Consensus pattern (26 bp):
AATAAAAAAAGGAAAGTTGGTAATGG
Found at i:146134463 original size:26 final size:26
Alignment explanation
Indices: 146134400--146134534 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
146134390 TGATACAAAT
146134400 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
146134426 T-ATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
146134451 TAATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
146134477 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
146134503 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
146134529 TGATAA
1 TGATAA
146134535 GAATTTCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 25 0.24
26 78 0.76
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:146136583 original size:136 final size:136
Alignment explanation
Indices: 146136303--146136587 Score: 527
Period size: 135 Copynumber: 2.1 Consensus size: 136
146136293 GAGTAGTCTC
146136303 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
146136368 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
146136433 CTGTTA
131 CTGTTA
*
146136439 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
146136503 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
146136568 ACTGTTA
130 ACTGTTA
**
146136575 CCTGAATGGGCTT
1 CCCAAATGGGCTT
146136588 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 83 0.57
136 62 0.43
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:146141647 original size:24 final size:24
Alignment explanation
Indices: 146141609--146141733 Score: 179
Period size: 24 Copynumber: 5.2 Consensus size: 24
146141599 TGATACAAAT
146141609 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAAT-GGTTAGGTAAATGTTCA
146141634 TGATAATGGTTAGGTAAATGTTCA
1 TGATAATGGTTAGGTAAATGTTCA
146141658 T-ATAATAGGTTAGGT-AATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTT-CA
146141682 TGATAA---TTAGGTAAATGTTCA
1 TGATAATGGTTAGGTAAATGTTCA
146141703 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATG-TTCA
146141728 TGATAA
1 TGATAA
146141734 GAATTTCATG
Statistics
Matches: 92, Mismatches: 0, Indels: 16
0.85 0.00 0.15
Matches are distributed among these distances:
21 14 0.15
22 6 0.07
23 11 0.12
24 40 0.43
25 21 0.23
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (24 bp):
TGATAATGGTTAGGTAAATGTTCA
Found at i:146141714 original size:45 final size:47
Alignment explanation
Indices: 146141609--146141734 Score: 188
Period size: 45 Copynumber: 2.7 Consensus size: 47
146141599 TGATACAAAT
146141609 TGATAATAGGTTAGGTAAATGTTCATGATAATGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAA--GTTAGGTAAATGTTCA
146141658 T-ATAATAGGTTAGGT-AATGTTCCATGATAA-TTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAAGTTAGGTAAATGTTCA
146141703 TGATAAT-GGTTAGGTAAATGTTTCATGATAAG
1 TGATAATAGGTTAGGTAAATG-TTCATGATAAG
146141735 AATTTCATGT
Statistics
Matches: 72, Mismatches: 0, Indels: 12
0.86 0.00 0.14
Matches are distributed among these distances:
45 24 0.33
46 17 0.24
47 8 0.11
48 22 0.31
49 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (47 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAAGTTAGGTAAATGTTCA
Found at i:146143758 original size:136 final size:136
Alignment explanation
Indices: 146143514--146143798 Score: 536
Period size: 136 Copynumber: 2.1 Consensus size: 136
146143504 GAGTAGTCTC
146143514 CCCAAATGGGCTTGCATATGTTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
146143579 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
146143644 CTGTTA
131 CTGTTA
146143650 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTA-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
146143714 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
146143779 ACTGTTA
130 ACTGTTA
**
146143786 CCTGAATGGGCTT
1 CCCAAATGGGCTT
146143799 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 3 0.02
136 143 0.98
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:146144481 original size:25 final size:26
Alignment explanation
Indices: 146144447--146144499 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
146144437 GTTTTTGATG
146144447 TGGCATGCC-ATCCGGCCATAACTTC
1 TGGCATGCCAATCCGGCCATAACTTC
146144472 TGGCATGCCAGATCCGGCCATAACTTC
1 TGGCATGCCA-ATCCGGCCATAACTTC
146144499 T
1 T
146144500 CGGCCGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 9 0.35
27 17 0.65
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.25
Consensus pattern (26 bp):
TGGCATGCCAATCCGGCCATAACTTC
Found at i:146146735 original size:16 final size:16
Alignment explanation
Indices: 146146714--146146747 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
146146704 TCATTTCCAC
146146714 CACAATCATACAATTT
1 CACAATCATACAATTT
146146730 CACAATCATACAATTT
1 CACAATCATACAATTT
146146746 CA
1 CA
146146748 ATCATCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.29
Consensus pattern (16 bp):
CACAATCATACAATTT
Found at i:146156084 original size:24 final size:22
Alignment explanation
Indices: 146156056--146156109 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
146156046 CACTTTTTTT
146156056 TTTCTTTTCTTTGTTTTTCTTCA
1 TTTCTTTT-TTTGTTTTTCTTCA
* *
146156079 TATTCTCTTTTTTTTTTTTTTTCA
1 T-TTCT-TTTTTTGTTTTTCTTCA
146156103 TTTCTTT
1 TTTCTTT
146156110 ATTCTTCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.07
23 5 0.19
24 17 0.63
25 3 0.11
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTCTTTTTTTGTTTTTCTTCA
Found at i:146158708 original size:28 final size:28
Alignment explanation
Indices: 146158643--146158741 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
146158633 CATGAGATTG
* * *
146158643 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
146158672 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
146158700 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
146158728 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
146158742 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:146166686 original size:28 final size:28
Alignment explanation
Indices: 146166621--146166719 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
146166611 CATGAGATTG
* * *
146166621 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
146166650 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
146166678 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
146166706 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
146166720 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:146178170 original size:25 final size:25
Alignment explanation
Indices: 146178123--146178172 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
146178113 ATAACCTTTC
146178123 TTTTTTCTGATCTAAATCCGAATTCT
1 TTTTTTCTGATCTAAAT-CGAATTCT
*
146178149 TTTTTTCTTGATCTATAT-GAATTC
1 TTTTTTC-TGATCTAAATCGAATTC
146178173 AAAGTTAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 7 0.32
27 9 0.41
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.54
Consensus pattern (25 bp):
TTTTTTCTGATCTAAATCGAATTCT
Found at i:146179391 original size:46 final size:46
Alignment explanation
Indices: 146179323--146179504 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
146179313 TATATATACA
* * *
146179323 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * * *
146179369 CATCTCATACACGTTTCGCATTATCCATTCGGCTTTTCCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
* * *
146179415 CATCTCATACACGTTTCACATTAGCCATTTGGCTTTACCTCATATC
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
*
146179461 CATCTCATACACATTTCGCATTAGCCA-TCGGCTTTACCACATAT
1 CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATAT
146179505 ATACACTTCC
Statistics
Matches: 120, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
45 15 0.12
46 105 0.88
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:146179480 original size:92 final size:91
Alignment explanation
Indices: 146179323--146179504 Score: 283
Period size: 92 Copynumber: 2.0 Consensus size: 91
146179313 TATATATACA
* *
146179323 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCGC
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGC
* * *
146179388 ATTATCCATTCGGCTTTTCCTCATATC
66 ATTAGCCA-TCGGCTTTACCACATATC
* * *
146179415 CATCTCATACACGTTTCACATTAGCCATTTGGCTTTACCTCATATCCATCTCATACACATTTCGC
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGC
146179480 ATTAGCCATCGGCTTTACCACATAT
66 ATTAGCCATCGGCTTTACCACATAT
146179505 ATACACTTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 15 0.18
92 67 0.82
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.36
Consensus pattern (91 bp):
CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGC
ATTAGCCATCGGCTTTACCACATATC
Found at i:146179526 original size:92 final size:91
Alignment explanation
Indices: 146179338--146179535 Score: 265
Period size: 92 Copynumber: 2.2 Consensus size: 91
146179328 CATACATATC
* *
146179338 TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCGCATTATCCATTCGGCT
1 TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
* * *
146179403 TTTCCTCATATCCATCTCATACACGTT
66 TTACCACATAT-CATCACATACACGTT
*
146179430 TCACATTAGCCATTTGGCTTTACCTCATATCCATCTCATACACATTTCGCATTAGCCA-TCGGCT
1 TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
* *
146179494 TTACCACATAT-ATACACTTCCACGTT
66 TTACCACATATCAT-CACATACACGTT
*
146179520 CATCACATTGGCCATT
1 --TCACATTAGCCATT
146179536 CTGCCTTATC
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
89 2 0.02
90 9 0.10
91 15 0.16
92 68 0.72
ACGTcount: A:0.24, C:0.31, G:0.09, T:0.35
Consensus pattern (91 bp):
TCACATTAGCCATTTGGCTTTACCACATATCCATCTCATACACATTTCGCATTAGCCATTCGGCT
TTACCACATATCATCACATACACGTT
Found at i:146179552 original size:47 final size:47
Alignment explanation
Indices: 146179479--146179808 Score: 495
Period size: 47 Copynumber: 7.1 Consensus size: 47
146179469 ACACATTTCG
* * * * * *
146179479 CATTAGCCA-TCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
146179525 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
146179572 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
146179619 CATTGGCCATTCGGCCTTATCA-ACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
146179665 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
146179712 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
146179759 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
146179806 CAT
1 CAT
146179809 AAAATCCTAA
Statistics
Matches: 266, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
46 54 0.20
47 212 0.80
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:146179670 original size:140 final size:141
Alignment explanation
Indices: 146179503--146179808 Score: 499
Period size: 140 Copynumber: 2.2 Consensus size: 141
146179493 TTTACCACAT
* * *
146179503 ATATACAC-TTCCACGTTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATT
1 ATATACACATT-CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
*
146179567 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCG
65 CATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCG
146179632 GCCTTATC-AAC
130 GCCTTATCTAAC
* **
146179643 ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
146179708 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTTGCCATTCGG
66 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
* *
146179773 CCTTATCTCAT
131 CCTTATCTAAC
146179784 ATATACACATTCACATTCATCACAT
1 ATATACACATTCACATTCATCACAT
146179809 AAAATCCTAA
Statistics
Matches: 152, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
140 127 0.84
141 25 0.16
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (141 bp):
ATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGG
CCTTATCTAAC
Found at i:146179712 original size:25 final size:25
Alignment explanation
Indices: 146179683--146179760 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
146179673 ATTCGGCCTT
146179683 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
146179708 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
146179730 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
146179755 ATCACA
1 ATCACA
146179761 TTTGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:146183653 original size:28 final size:28
Alignment explanation
Indices: 146183622--146183778 Score: 127
Period size: 28 Copynumber: 5.5 Consensus size: 28
146183612 CTGACTGATT
*
146183622 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
146183650 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
146183679 TCGCACACATAGTGCTTGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
146183707 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * **
146183736 TGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
146183764 TTGCACACACAGTGC
1 TCGCACACATAGTGC
146183779 CTCATAATTC
Statistics
Matches: 99, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.55
29 43 0.43
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:146183682 original size:29 final size:29
Alignment explanation
Indices: 146183649--146183750 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
146183639 GATTAAAGAA
146183649 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
** **
146183678 CTCGCACACATAGTG-CTTGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
146183706 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
146183735 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
146183751 TCGGTTGGAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:146183689 original size:57 final size:57
Alignment explanation
Indices: 146183622--146183782 Score: 223
Period size: 57 Copynumber: 2.8 Consensus size: 57
146183612 CTGACTGATT
* * *
146183622 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
146183679 TCGCACACATAGTGCTTGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
146183736 TGGCACACATAGTGCTCGGTTGGAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
146183783 TAATTCCAGC
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 92 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:146183854 original size:40 final size:40
Alignment explanation
Indices: 146183810--146183904 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
146183800 CCTTCGAGGT
*
146183810 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGAAC
* *
146183850 TTAGCTCGGATATATCACTAGCACAAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGAAC
146183890 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
146183905 ATAACTCTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACAAATGCTCTTCGGAAC
Found at i:146185441 original size:46 final size:46
Alignment explanation
Indices: 146185388--146185570 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
146185378 TATATATACA
* * * *
146185388 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
146185434 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
146185480 CATCTCATACACGTTTCGCATTAGCCATTCAGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
146185526 CATCTCATATACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
146185571 ATACACTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:146185708 original size:22 final size:22
Alignment explanation
Indices: 146185634--146185708 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
146185624 GTTCACATTC
146185634 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
146185656 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
146185680 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
146185703 ATCACA
1 ATCACA
146185709 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:146185755 original size:22 final size:22
Alignment explanation
Indices: 146185634--146185755 Score: 58
Period size: 23 Copynumber: 5.3 Consensus size: 22
146185624 GTTCACATTC
*
146185634 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGACCTT
*
146185656 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGACCTT
*
146185680 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
*
146185703 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGACCTT
146185727 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
146185750 ATCACA
1 ATCACA
146185756 CATATGCATG
Statistics
Matches: 75, Mismatches: 7, Indels: 36
0.64 0.06 0.31
Matches are distributed among these distances:
22 18 0.24
23 23 0.31
24 22 0.29
25 12 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:146185901 original size:47 final size:47
Alignment explanation
Indices: 146185544--146185893 Score: 531
Period size: 47 Copynumber: 7.4 Consensus size: 47
146185534 ATACATTTCG
* * * * * * *
146185544 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
** **
146185591 CATTGGCCATTTTGCCTTATCACATTTATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
146185638 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
146185685 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
146185732 CATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
146185779 AATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
146185826 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
146185873 CATTTGCCATTCGGCCTTATC
1 CATTGGCCATTCGGCCTTATC
146185894 TCATATATAC
Statistics
Matches: 280, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 279 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:146195075 original size:40 final size:40
Alignment explanation
Indices: 146195030--146195159 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
146195020 CGGAATACAA
146195030 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
146195070 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
146195110 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
146195150 CCGGATATAA
1 CCGGATATAA
146195160 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:146197777 original size:49 final size:49
Alignment explanation
Indices: 146197708--146197927 Score: 408
Period size: 49 Copynumber: 4.5 Consensus size: 49
146197698 NNNNNNNNNG
*
146197708 ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
146197757 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
146197806 ATGTATATGTGATGAGGCCTAATGGCCG--GTGGTGAATGTGAAAGTGT
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
146197853 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
146197902 ATGTATATGTGATAAGGCCTAATGGC
1 ATGTATATGTGATGAGGCCTAATGGC
146197928 TAATGTAAAA
Statistics
Matches: 167, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
47 47 0.28
49 120 0.72
ACGTcount: A:0.27, C:0.09, G:0.34, T:0.30
Consensus pattern (49 bp):
ATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
Found at i:146197874 original size:96 final size:97
Alignment explanation
Indices: 146197708--146197927 Score: 406
Period size: 96 Copynumber: 2.3 Consensus size: 97
146197698 NNNNNNNNNG
146197708 ATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATGTATATGTGATGAGGCCTAATGGCCGA-GTGATGAATGTGAAAGTGTATGTATATGTGATGAG
146197773 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
65 GCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
146197806 ATGTATATGTGATGAGGCCTAATGGCCG-GTGGTGAATGTGAAAGTGTATGTATATGTGATGAGG
1 ATGTATATGTGATGAGGCCTAATGGCCGAGTGATGAATGTGAAAGTGTATGTATATGTGATGAGG
146197870 CCTAATGGCCGATGTGGTGAATGTGAAAGTGT
66 CCTAATGGCCGATGTGGTGAATGTGAAAGTGT
*
146197902 ATGTATATGTGATAAGGCCTAATGGC
1 ATGTATATGTGATGAGGCCTAATGGC
146197928 TAATGTAAAA
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
96 92 0.77
98 28 0.23
ACGTcount: A:0.27, C:0.09, G:0.34, T:0.30
Consensus pattern (97 bp):
ATGTATATGTGATGAGGCCTAATGGCCGAGTGATGAATGTGAAAGTGTATGTATATGTGATGAGG
CCTAATGGCCGATGTGGTGAATGTGAAAGTGT
Found at i:146198076 original size:30 final size:31
Alignment explanation
Indices: 146198041--146198133 Score: 95
Period size: 30 Copynumber: 3.0 Consensus size: 31
146198031 GGGTGAGACC
146198041 CGATGACTACGTGTGGAGATTATGACCGGGA
1 CGATGACTACGTGTGGAGATTATGACCGGGA
*
146198072 -GATGACTACGTGT-GAGA-T-TGACGGGTAAGA
1 CGATGACTACGTGTGGAGATTATGACCGG---GA
*
146198102 CCCGATGACTACGTGTGGAGATTATGTCCGGG
1 --CGATGACTACGTGTGGAGATTATGACCGGG
146198134 TAAGACTTCT
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
27 6 0.12
28 1 0.02
29 4 0.08
30 15 0.30
33 14 0.28
34 4 0.08
35 1 0.02
36 5 0.10
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (31 bp):
CGATGACTACGTGTGGAGATTATGACCGGGA
Found at i:146202966 original size:27 final size:27
Alignment explanation
Indices: 146202934--146203067 Score: 72
Period size: 27 Copynumber: 5.3 Consensus size: 27
146202924 CTAATGGCCG
146202934 ATGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
146202961 ATGTGATG-AGGCCTAA-TGGCCG---
1 ATGTGATGAATGTGAAAGTGGATGTAT
*
146202983 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
146203010 ATGTGATG-AGGCCTAA-TGGCCG---
1 ATGTGATGAATGTGAAAGTGGATGTAT
*
146203032 ATGTGGTGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
146203059 ATGTGATGA
1 ATGTGATGA
146203068 GACCTAATGG
Statistics
Matches: 69, Mismatches: 28, Indels: 20
0.59 0.24 0.17
Matches are distributed among these distances:
22 15 0.22
23 8 0.12
24 7 0.10
25 7 0.10
26 8 0.12
27 24 0.35
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGGATGTAT
Found at i:146202992 original size:49 final size:49
Alignment explanation
Indices: 146202866--146203176 Score: 518
Period size: 49 Copynumber: 6.4 Consensus size: 49
146202856 TACATATATG
* *
146202866 TGTGAT-AAGCCTAATGGCCAATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
146202914 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
146202962 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
146203011 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
* * *
146203060 TGTGATGAGACCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
* *
146203109 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
*
146203158 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
146203177 TAATGTAAAA
Statistics
Matches: 253, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
48 52 0.21
49 201 0.79
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
Found at i:146203328 original size:37 final size:37
Alignment explanation
Indices: 146203278--146203399 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
146203268 GGAATATGTT
*
146203278 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
146203315 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
146203352 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
146203389 CCGGGTAAGAC
1 CCGGGTAAGAC
146203400 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:146206520 original size:71 final size:67
Alignment explanation
Indices: 146206441--146206580 Score: 199
Period size: 67 Copynumber: 2.0 Consensus size: 67
146206431 GTCACCAATA
* * *
146206441 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
146206506 GGCTGC
62 GGCTGC
* *
146206512 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
146206577 GC
66 GC
146206579 CA
1 CA
146206581 AACGCTTCCT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 39 0.61
71 25 0.39
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:146206560 original size:27 final size:26
Alignment explanation
Indices: 146206512--146206563 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
146206502 GCGAGGCTGC
*
146206512 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
146206538 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
146206564 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:146211625 original size:38 final size:38
Alignment explanation
Indices: 146211583--146211661 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
146211573 AAGTCCTAAA
* *
146211583 TCTCTCCTAAAATGGTTCTGATCTTTCTCATGATTCTG
1 TCTCTCCTAAAACGGTTCTGATCTTTCTCACGATTCTG
146211621 TCTCTCCTAAAACGGTTCTGATCTTTCTCACGATTCTG
1 TCTCTCCTAAAACGGTTCTGATCTTTCTCACGATTCTG
146211659 TCT
1 TCT
146211662 TTCTACATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.43
Consensus pattern (38 bp):
TCTCTCCTAAAACGGTTCTGATCTTTCTCACGATTCTG
Found at i:146213667 original size:2 final size:2
Alignment explanation
Indices: 146213660--146213697 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
146213650 ATTAGAACAG
146213660 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
146213698 GTGGCAAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:146218688 original size:29 final size:29
Alignment explanation
Indices: 146218627--146218816 Score: 240
Period size: 29 Copynumber: 6.6 Consensus size: 29
146218617 TACTCGATTT
* *
146218627 CGCACACTTAGTGCCAT-TCGATTT-AAGCC
1 CGCACACTTAGTGCCATAT--ATTTCCAGCA
* *** * *
146218656 CGCACACATAGTGCCATAGCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
146218685 CGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
146218714 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
146218743 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
146218772 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
146218801 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
146218817 ATCTCGTCAC
Statistics
Matches: 140, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
28 2 0.01
29 138 0.99
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:146221714 original size:140 final size:140
Alignment explanation
Indices: 146221510--146221766 Score: 415
Period size: 140 Copynumber: 1.8 Consensus size: 140
146221500 TTTCACATCA
* **
146221510 CAAACACACAAAAATAATTTTATCAAGGATTTAGGAATTGGGGTGTTACATATTTGCTGAGTCGT
1 CAAACACAAAAAAATAATTTTATCAAGGATTTAGGAATTGGGACGTTACATATTTGCTGAGTCGT
*
146221575 ACAAACTTTCTTTCATATTCGATGACTGACATACGTCCTTACTTTAATTCAATAAATTATTTTCT
66 ACAAACTTTCTTTCATATTCGATGACTGACATACGTCCTTACTTCAATTCAATAAATTATTTTCT
146221640 TGAATTGAAG
131 TGAATTGAAG
* * * *
146221650 CAAAGACAAAAAAATAATTTTATCAGGGATTTGGGGATTGGGACGTTACATATTTGCTGAGTCGT
1 CAAACACAAAAAAATAATTTTATCAAGGATTTAGGAATTGGGACGTTACATATTTGCTGAGTCGT
* * *
146221715 AGAAACTTTCTTTCATATTCGGTGACTGACATACGTCCTTGCTTCAATTCAA
66 ACAAACTTTCTTTCATATTCGATGACTGACATACGTCCTTACTTCAATTCAA
146221767 GATATTCTTT
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
140 106 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (140 bp):
CAAACACAAAAAAATAATTTTATCAAGGATTTAGGAATTGGGACGTTACATATTTGCTGAGTCGT
ACAAACTTTCTTTCATATTCGATGACTGACATACGTCCTTACTTCAATTCAATAAATTATTTTCT
TGAATTGAAG
Found at i:146223970 original size:25 final size:24
Alignment explanation
Indices: 146223939--146224031 Score: 84
Period size: 23 Copynumber: 3.9 Consensus size: 24
146223929 AAGCTCCTCC
*
146223939 TGAGCTGATGAACAGTAAGCTCTAT
1 TGAGCTGA-AAACAGTAAGCTCTAT
**
146223964 TGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
* * *
146223988 TGAGCTG-AATCCGTAAGCT-TCAA
1 TGAGCTGAAAACAGTAAGCTCT-AT
*
146224011 TAAGCTG-AAACAGTAAGCTCT
1 TGAGCTGAAAACAGTAAGCTCT
146224032 TATGAACTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
22 1 0.02
23 26 0.46
24 21 0.38
25 8 0.14
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAT
Found at i:146225885 original size:29 final size:28
Alignment explanation
Indices: 146225842--146225896 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
146225832 CATCTGAAGC
146225842 ACTGATATCATGG-CCAGAAGCCAAATCA
1 ACTGATATCATGGCCCA-AAGCCAAATCA
146225870 ACTGATATTCATGGCCCAAAGCCAAAT
1 ACTGATA-TCATGGCCCAAAGCCAAAT
146225897 TGGTATATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 7 0.28
29 15 0.60
30 3 0.12
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.20
Consensus pattern (28 bp):
ACTGATATCATGGCCCAAAGCCAAATCA
Found at i:146227598 original size:40 final size:40
Alignment explanation
Indices: 146227554--146227708 Score: 222
Period size: 40 Copynumber: 3.9 Consensus size: 40
146227544 TAAGAGCATC
* * * *
146227554 GAAGTTCAAACAGGGGCACCG-ATGTGAAATTAGGGGTACT
1 GAAGTACAAACAGGGGCA-CGTAAGTGCAATCAGGGGTACT
* *
146227594 GAAGTACAAACAGGGGCATGTAAGTGCAATCAGGGGTACC
1 GAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACT
*
146227634 GAAGTACAAACAGGGGCACGTAAGTGCAATCCGGGGTACT
1 GAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACT
*
146227674 GAAGTACAAACAGGGGTACGTAAGTGCAATCAGGG
1 GAAGTACAAACAGGGGCACGTAAGTGCAATCAGGG
146227709 TAGAATTTAC
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 102 0.99
ACGTcount: A:0.34, C:0.17, G:0.33, T:0.16
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACT
Found at i:146227608 original size:20 final size:20
Alignment explanation
Indices: 146227585--146227692 Score: 112
Period size: 20 Copynumber: 5.4 Consensus size: 20
146227575 ATGTGAAATT
146227585 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * *
146227605 AGGGGCA-TGTAAGTGCAATC
1 AGGGGTACTG-AAGTACAAAC
*
146227625 AGGGGTACCGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * *
146227645 AGGGGCAC-GTAAGTGCAATC
1 AGGGGTACTG-AAGTACAAAC
*
146227665 CGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
146227685 AGGGGTAC
1 AGGGGTAC
146227693 GTAAGTGCAA
Statistics
Matches: 69, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
19 3 0.04
20 64 0.93
21 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.33, T:0.15
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:146227698 original size:20 final size:20
Alignment explanation
Indices: 146227585--146227708 Score: 110
Period size: 20 Copynumber: 6.2 Consensus size: 20
146227575 ATGTGAAATT
146227585 AGGGGTAC-TGAAGTACAAAC
1 AGGGGTACGT-AAGTACAAAC
* * * *
146227605 AGGGGCATGTAAGTGCAATC
1 AGGGGTACGTAAGTACAAAC
146227625 AGGGGTACCG-AAGTACAAAC
1 AGGGGTA-CGTAAGTACAAAC
* * *
146227645 AGGGGCACGTAAGTGCAATC
1 AGGGGTACGTAAGTACAAAC
*
146227665 CGGGGTAC-TGAAGTACAAAC
1 AGGGGTACGT-AAGTACAAAC
* *
146227685 AGGGGTACGTAAGTGCAATC
1 AGGGGTACGTAAGTACAAAC
146227705 AGGG
1 AGGG
146227709 TAGAATTTAC
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.04
20 75 0.93
21 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.34, T:0.15
Consensus pattern (20 bp):
AGGGGTACGTAAGTACAAAC
Found at i:146227802 original size:21 final size:21
Alignment explanation
Indices: 146227776--146227817 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
146227766 TAAATTATAA
146227776 AATTTAATACTATGAACTTAC
1 AATTTAATACTATGAACTTAC
146227797 AATTTAATACTATGAACTTAC
1 AATTTAATACTATGAACTTAC
146227818 CTGGCTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (21 bp):
AATTTAATACTATGAACTTAC
Found at i:146230863 original size:24 final size:23
Alignment explanation
Indices: 146230830--146230905 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 23
146230820 GGCCTAGCCT
*
146230830 CTTTTAATAACTGGGGCAAAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
146230853 CATTTTAATAATTGGGGCATAAGC
1 C-TTTTAATAACTGGGGCATAAGC
* *
146230877 CCTTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
146230901 CTTTT
1 CTTTT
146230906 GCACTTCTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
23 19 0.42
24 26 0.58
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:146230886 original size:23 final size:23
Alignment explanation
Indices: 146230832--146230904 Score: 101
Period size: 23 Copynumber: 3.1 Consensus size: 23
146230822 CCTAGCCTCT
* *
146230832 TTTAATAACTGGGGCAAAAGCCAT
1 TTTAATAACTGGGGCATAAGCC-C
*
146230856 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
146230879 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
146230902 TTT
1 TTT
146230905 TGCACTTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 24 0.55
24 20 0.45
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:146230998 original size:20 final size:20
Alignment explanation
Indices: 146230953--146230999 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
146230943 TTATGAATAC
146230953 ACCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
**
146230973 GTCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
146230993 ACCATGT
1 ACCATGT
146231000 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (20 bp):
ACCATGTGCATATCATACAT
Found at i:146231078 original size:25 final size:25
Alignment explanation
Indices: 146231036--146231083 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
146231026 ATATTTAAGC
* * *
146231036 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
146231061 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
146231084 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:146233409 original size:19 final size:18
Alignment explanation
Indices: 146233372--146233415 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
146233362 ATACTTACAG
146233372 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
146233389 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
146233408 TACTAATT
1 TAATAATT
146233416 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:146237818 original size:27 final size:28
Alignment explanation
Indices: 146237788--146237853 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
146237778 GGGCATAATC
* *
146237788 GTCATTCTACCA-TACAGGGGTATTACA
1 GTCATTTTACCACTACAAGGGTATTACA
*
146237815 GTCATTTTA-CACTACAAGGGTATTTCA
1 GTCATTTTACCACTACAAGGGTATTACA
*
146237842 GTAATTTTACCA
1 GTCATTTTACCA
146237854 ATATTAGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (28 bp):
GTCATTTTACCACTACAAGGGTATTACA
Found at i:146243183 original size:30 final size:30
Alignment explanation
Indices: 146243128--146243287 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
146243118 ATAGTGAATC
146243128 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
146243157 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
146243187 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
146243216 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
146243244 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
146243274 CGCACACTTAGTGC
1 CGCACACTTAGTGC
146243288 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:146243220 original size:59 final size:57
Alignment explanation
Indices: 146243128--146243287 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
146243118 ATAGTGAATC
*
146243128 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
146243187 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
146243244 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
146243288 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:146251337 original size:80 final size:80
Alignment explanation
Indices: 146251253--146251401 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
146251243 TATGGTAACC
* * * *
146251253 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
146251317 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
146251333 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
146251398 CCGG
66 CCGG
146251402 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:146251343 original size:40 final size:38
Alignment explanation
Indices: 146251294--146251401 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
146251284 ATCACGATTT
*
146251294 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
146251334 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
146251374 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
146251402 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:146259453 original size:80 final size:80
Alignment explanation
Indices: 146259369--146259517 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
146259359 TATGGTAACC
* * * *
146259369 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
146259433 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
146259449 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
146259514 CCGG
66 CCGG
146259518 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:146259459 original size:40 final size:38
Alignment explanation
Indices: 146259410--146259517 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
146259400 ATCACGATTT
*
146259410 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
146259450 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
146259490 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
146259518 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:146275136 original size:35 final size:35
Alignment explanation
Indices: 146275063--146275134 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 35
146275053 CTAAAAAAAA
146275063 TTCTGCTAAGGTATTATGGTCATTTTAGTTTTTTT
1 TTCTGCTAAGGTATTATGGTCATTTTAGTTTTTTT
146275098 TTCTGCTAAGGGTATTATGGTCATTTTAGTTTTTTT
1 TTCTGCTAA-GGTATTATGGTCATTTTAGTTTTTTT
146275134 T
1 T
146275135 CTTTATTCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 9 0.25
36 27 0.75
ACGTcount: A:0.17, C:0.08, G:0.18, T:0.57
Consensus pattern (35 bp):
TTCTGCTAAGGTATTATGGTCATTTTAGTTTTTTT
Found at i:146278232 original size:57 final size:57
Alignment explanation
Indices: 146278144--146278259 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
146278134 ATTTAGAGGA
*
146278144 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCTATTGGGGCAAATTTTGAC
1 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGCAAATTTTGAC
*
146278201 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGGAAATTTTGAC
1 ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGCAAATTTTGAC
146278258 AT
1 AT
146278260 CAGACCCTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (57 bp):
ATTAATCATGGAAAAGGAACTCAACTATGTTGAGGACCCATTGGGGCAAATTTTGAC
Found at i:146280149 original size:3 final size:3
Alignment explanation
Indices: 146280141--146280181 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
146280131 GCAACGAGTT
146280141 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
146280182 TACTACAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:146282219 original size:17 final size:17
Alignment explanation
Indices: 146282199--146282234 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
146282189 TTTGCATATT
146282199 TGTGATTTTGTGAAAAA
1 TGTGATTTTGTGAAAAA
146282216 TGTGATTTTGTGAAAAA
1 TGTGATTTTGTGAAAAA
146282233 TG
1 TG
146282235 GACTAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (17 bp):
TGTGATTTTGTGAAAAA
Found at i:146286197 original size:29 final size:29
Alignment explanation
Indices: 146286173--146286266 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
146286163 TCGCACACCC
*
146286173 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
146286202 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
146286231 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
146286260 AGTGCCA
1 AGTGCCA
146286267 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:146286198 original size:58 final size:58
Alignment explanation
Indices: 146286136--146286266 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
146286126 ATTTAAGCCC
* * * *
146286136 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
146286194 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
146286252 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
146286267 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:146287988 original size:21 final size:20
Alignment explanation
Indices: 146287950--146287988 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
146287940 ATTTATAATA
146287950 AATTTTGATTAATTTTGATT
1 AATTTTGATTAATTTTGATT
*
146287970 AATTTTGACTTAGTTTTGA
1 AATTTTGA-TTAATTTTGA
146287989 CAGATTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.56
Consensus pattern (20 bp):
AATTTTGATTAATTTTGATT
Found at i:146287989 original size:11 final size:10
Alignment explanation
Indices: 146287950--146287988 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
146287940 ATTTATAATA
146287950 AATTTTGATT
1 AATTTTGATT
146287960 AATTTTGATT
1 AATTTTGATT
146287970 AATTTTGACTT
1 AATTTTGA-TT
*
146287981 AGTTTTGA
1 AATTTTGA
146287989 CAGATTCACA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.56
Consensus pattern (10 bp):
AATTTTGATT
Found at i:146291689 original size:27 final size:28
Alignment explanation
Indices: 146291633--146291702 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
146291623 AAATTTGTAC
146291633 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
146291661 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
146291688 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
146291703 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:146291713 original size:27 final size:27
Alignment explanation
Indices: 146291633--146291714 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
146291623 AAATTTGTAC
* *
146291633 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
146291661 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
146291688 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
146291715 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:146299606 original size:27 final size:28
Alignment explanation
Indices: 146299550--146299619 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
146299540 AAAATTGTAC
146299550 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
146299578 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
146299605 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
146299620 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:146299630 original size:27 final size:27
Alignment explanation
Indices: 146299550--146299631 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
146299540 AAAATTGTAC
* *
146299550 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
146299578 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
146299605 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
146299632 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:146307611 original size:40 final size:40
Alignment explanation
Indices: 146307526--146307676 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
146307516 AATTGAATGA
* * *
146307526 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
146307566 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
146307607 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
146307646 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
146307677 ACGGTTATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:146309274 original size:39 final size:39
Alignment explanation
Indices: 146309220--146309411 Score: 321
Period size: 39 Copynumber: 4.9 Consensus size: 39
146309210 GAATGTTCGA
146309220 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
146309259 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
**
146309298 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
146309337 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
146309376 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
146309412 GGTTACCATA
Statistics
Matches: 145, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 128 0.88
40 17 0.12
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:146309427 original size:40 final size:39
Alignment explanation
Indices: 146309221--146309441 Score: 307
Period size: 39 Copynumber: 5.6 Consensus size: 39
146309211 AATGTTCGAG
* *
146309221 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
146309260 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
146309299 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
146309338 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
146309377 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
146309417 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
146309442 TGTTTTGAAC
Statistics
Matches: 167, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 127 0.76
40 40 0.24
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:146312684 original size:68 final size:64
Alignment explanation
Indices: 146312569--146312826 Score: 211
Period size: 68 Copynumber: 3.9 Consensus size: 64
146312559 TGGATGATAC
* * ** * * *
146312569 AGATGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC
146312632 AAG
64 --G
* *
146312635 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
146312700 G
64 G
* * * * * *
146312701 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
146312766 CG
63 CG
* * * *
146312768 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
146312827 CGAACTATAT
Statistics
Matches: 156, Mismatches: 27, Indels: 21
0.76 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 25 0.16
67 36 0.23
68 46 0.29
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:146312724 original size:64 final size:64
Alignment explanation
Indices: 146312643--146312826 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
146312633 AGACATTATG
* * *
146312643 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
146312707 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
146312772 AA
63 AA
* * *
146312774 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
146312827 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:146316020 original size:28 final size:28
Alignment explanation
Indices: 146315977--146316141 Score: 172
Period size: 28 Copynumber: 5.9 Consensus size: 28
146315967 ATGCCTTTGA
* *
146315977 ATACTCAATATTTCGCACACTAAGTGCT
1 ATACTCAATGTCTCGCACACTAAGTGCT
* *
146316005 ATACCCAATGTCTCGCACACTAAATG-T
1 ATACTCAATGTCTCGCACACTAAGTGCT
* * *
146316032 CATGCTCGATGTCTCGCACACTAAGTGCC
1 -ATACTCAATGTCTCGCACACTAAGTGCT
* * *
146316061 ATACTCAATTTCTCGCACACTAAATGCC
1 ATACTCAATGTCTCGCACACTAAGTGCT
**
146316089 ATACTCAATGTCTCATACACTAAGTG-T
1 ATACTCAATGTCTCGCACACTAAGTGCT
* *
146316116 CATATTCAATGTTTCGCACACTAAGT
1 -ATACTCAATGTCTCGCACACTAAGT
146316142 CCCGTATATA
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.01
28 111 0.99
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (28 bp):
ATACTCAATGTCTCGCACACTAAGTGCT
Found at i:146316075 original size:56 final size:56
Alignment explanation
Indices: 146315977--146316139 Score: 202
Period size: 56 Copynumber: 2.9 Consensus size: 56
146315967 ATGCCTTTGA
* * * * * *
146315977 ATACTCAATATTTCGCACACTAAGTGCTATACCCAATGTCTCGCACACTAAATGTC
1 ATACTCAATGTCTCGCACACTAAGTGCCATACTCAATTTCTCGCACACTAAATGCC
* *
146316033 ATGCTCGATGTCTCGCACACTAAGTGCCATACTCAATTTCTCGCACACTAAATGCC
1 ATACTCAATGTCTCGCACACTAAGTGCCATACTCAATTTCTCGCACACTAAATGCC
** * *
146316089 ATACTCAATGTCTCATACACTAAGTGTCATATTCAATGTT-TCGCACACTAA
1 ATACTCAATGTCTCGCACACTAAGTGCCATACTCAAT-TTCTCGCACACTAA
146316140 GTCCCGTATA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
56 90 0.98
57 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (56 bp):
ATACTCAATGTCTCGCACACTAAGTGCCATACTCAATTTCTCGCACACTAAATGCC
Found at i:146316079 original size:84 final size:84
Alignment explanation
Indices: 146315977--146316141 Score: 224
Period size: 84 Copynumber: 2.0 Consensus size: 84
146315967 ATGCCTTTGA
* * * * *
146315977 ATACTCAATATTTCGCACACTAAGTGCTATACCCAATGTCTCGCACACTAAATGTCATGCTCGAT
1 ATACTCAATATTTCGCACACTAAATGCCATACCCAATGTCTCACACACTAAATGTCATACTCAAT
146316042 GTCTCGCACACTAAGTGCC
66 GTCTCGCACACTAAGTGCC
* * * *
146316061 ATACTCAAT-TTCTCGCACACTAAATGCCATACTCAATGTCTCATACACTAAGTGTCATATTCAA
1 ATACTCAATATT-TCGCACACTAAATGCCATACCCAATGTCTCACACACTAAATGTCATACTCAA
*
146316125 TGTTTCGCACACTAAGT
65 TGTCTCGCACACTAAGT
146316142 CCCGTATATA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
83 2 0.03
84 68 0.97
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (84 bp):
ATACTCAATATTTCGCACACTAAATGCCATACCCAATGTCTCACACACTAAATGTCATACTCAAT
GTCTCGCACACTAAGTGCC
Found at i:146319633 original size:27 final size:26
Alignment explanation
Indices: 146319585--146319644 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
146319575 GCGAGGCTGC
*
146319585 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
146319612 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
146319638 CAGATAT
1 CAGATAT
146319645 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:146321438 original size:41 final size:40
Alignment explanation
Indices: 146321307--146321446 Score: 162
Period size: 40 Copynumber: 3.5 Consensus size: 40
146321297 GATTATGTTT
* * *
146321307 GGCACTTAGTGTGCG-TATCGAGATAGCTTCGGCCATATAAA
1 GGCACTTAGTGTACGAGATTGAGATAGCTTCGG-C-TATAAA
* * *
146321348 -GCACTTAGTGTGCGA-ATTG-GAATAGCTTGGGCTATATA
1 GGCACTTAGTGTACGAGATTGAG-ATAGCTTCGGCTATAAA
146321386 GGCACTTAGTGTACGAGATTGAGATAGCTTCGGCTATGAAA
1 GGCACTTAGTGTACGAGATTGAGATAGCTTCGGCTAT-AAA
146321427 GGCACTTAGTGTACGAGATT
1 GGCACTTAGTGTACGAGATT
146321447 ATAATTGCTT
Statistics
Matches: 87, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
38 5 0.06
39 16 0.18
40 43 0.49
41 23 0.26
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCACTTAGTGTACGAGATTGAGATAGCTTCGGCTATAAA
Done.