Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 476 of 770
Found at i:147072407 original size:40 final size:40
Alignment explanation
Indices: 147072320--147072531 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
147072310 CCTTCGGAAT
* * *
147072320 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
147072359 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
147072399 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
147072439 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
147072479 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
147072519 TTAGCCCGGATAT
1 TTAACCCGGATAT
147072532 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:147072445 original size:80 final size:80
Alignment explanation
Indices: 147072320--147072531 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
147072310 CCTTCGGAAT
* * * ** * ***
147072320 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
147072384 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
147072399 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
147072464 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
147072479 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
147072532 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:147082931 original size:40 final size:40
Alignment explanation
Indices: 147082781--147082948 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
147082771 CGGAATACAA
* * *
147082781 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
147082821 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
147082861 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
147082901 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
147082941 CCGGATAT
1 CCGGATAT
147082949 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:147084206 original size:15 final size:15
Alignment explanation
Indices: 147084188--147084222 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
147084178 CTTTTCTTCC
* *
147084188 TTTCTTTTTTTTTTT
1 TTTCTTTTTGTTTTG
147084203 TTTCTTTTTGTTTTG
1 TTTCTTTTTGTTTTG
147084218 TTTCT
1 TTTCT
147084223 CTCATGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.86
Consensus pattern (15 bp):
TTTCTTTTTGTTTTG
Found at i:147090882 original size:40 final size:40
Alignment explanation
Indices: 147090823--147090908 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
147090813 CGGAATACAA
*
147090823 CCGGATATAACCACATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
* * *
147090863 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
147090903 CCGGAT
1 CCGGAT
147090909 GTAGTCACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (40 bp):
CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
Found at i:147090930 original size:40 final size:41
Alignment explanation
Indices: 147090839--147090948 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
147090829 ATAACCACAT
* *
147090839 GCACGAATGCCCTCGGGTCTTAGCCCGGA-TAGAACGACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
147090879 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
147090919 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
147090949 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 57 0.90
41 1 0.02
42 3 0.05
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:147092248 original size:18 final size:18
Alignment explanation
Indices: 147092227--147092264 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
147092217 ACTTTTCTTC
* *
147092227 CTTTCTTTTTTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
147092245 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
147092263 CT
1 CT
147092265 CTCATGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:147097685 original size:49 final size:49
Alignment explanation
Indices: 147097558--147097813 Score: 448
Period size: 49 Copynumber: 5.3 Consensus size: 49
147097548 CCCTTCGGGA
* * *
147097558 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
147097605 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
147097652 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
147097701 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
147097750 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
147097799 CTTATCACATATATA
1 CTTATCACATATATA
147097814 TACCTCATAC
Statistics
Matches: 200, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 52 0.26
48 3 0.01
49 145 0.73
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:147110416 original size:93 final size:93
Alignment explanation
Indices: 147110304--147110475 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
147110294 GCCCATAAGT
* *
147110304 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
147110369 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
147110397 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
147110462 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
147110476 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:147110471 original size:46 final size:46
Alignment explanation
Indices: 147110296--147110471 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
147110286 TGTAACCCGC
* * *
147110296 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
147110342 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
147110392 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
147110435 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
147110472 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:147117675 original size:46 final size:46
Alignment explanation
Indices: 147117617--147117732 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 46
147117607 GAGAGCTAGT
* *
147117617 GTAAGACATGTCTAGGACATGCATTGGCCTCGTGACGTAAGCCAGC
1 GTAAGACATGTCTAGGACATGCATAGGCCTCATGACGTAAGCCAGC
* * *
147117663 GTAAGACATGTCTCA-AACATGCATAGGCCTCATGACGTAAGCTAGG
1 GTAAGACATGTCT-AGGACATGCATAGGCCTCATGACGTAAGCCAGC
* *
147117709 GTAAGACATGTTTGGGACATGCAT
1 GTAAGACATGTCTAGGACATGCAT
147117733 CAGCTACCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 59 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
GTAAGACATGTCTAGGACATGCATAGGCCTCATGACGTAAGCCAGC
Found at i:147117862 original size:49 final size:47
Alignment explanation
Indices: 147117749--147117925 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 47
147117739 CCAGTTGTGT
* * * * *
147117749 CAGTGTAAGACAATGTCTAGGACATGGCATCAACACAGATATG-TGAGAGC
1 CAGTGTAAGACCATGTATGGGACATGGCATCAACTC-GAT-CGAT--GAGC
* * *
147117799 TAGTGTAAGACCATGTATGGGACATGGCGTCAACCTCGATTTCGAT-AGT
1 CAGTGTAAGACCATGTATGGGACATGGCATCAA-CTCGA--TCGATGAGC
* * *
147117848 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATCGATGAGC
1 CAGTGTAAGACCATGTATGGGACATGGCATCAACTCGATCGATGAGC
* *
147117895 CAGTGTAAGACCATGTCTTGGACATGGCATC
1 CAGTGTAAGACCATGTATGGGACATGGCATC
147117926 GACATTATAC
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
46 5 0.05
47 31 0.29
48 4 0.04
49 31 0.29
50 30 0.28
51 3 0.03
52 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTATGGGACATGGCATCAACTCGATCGATGAGC
Found at i:147119107 original size:21 final size:20
Alignment explanation
Indices: 147119083--147119122 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
147119073 GTTTTAATGA
*
147119083 CCACACAAGCGTGTTGCCCTT
1 CCACACAAGCATGTT-CCCTT
*
147119104 CCACACGAGCATGTTCCCT
1 CCACACAAGCATGTTCCCT
147119123 GTTTTAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.20, C:0.40, G:0.17, T:0.23
Consensus pattern (20 bp):
CCACACAAGCATGTTCCCTT
Found at i:147124117 original size:39 final size:39
Alignment explanation
Indices: 147123986--147124176 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
147123976 GGATATAACG
* ** **
147123986 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
147124026 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
147124066 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
147124104 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
147124144 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
147124177 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:147124121 original size:78 final size:80
Alignment explanation
Indices: 147124026--147124176 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
147124016 GGTTATAGCG
* * * *
147124026 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
147124088 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
147124104 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
147124169 AGCCCGGA
66 AGCCCGGA
147124177 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:147127537 original size:17 final size:18
Alignment explanation
Indices: 147127495--147127543 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
147127485 AGTTGAAAAG
147127495 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
147127514 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
147127531 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
147127544 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:147128428 original size:40 final size:40
Alignment explanation
Indices: 147128362--147128528 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
147128352 AAATTGAATG
* * *
147128362 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
147128401 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
147128441 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
147128481 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
147128521 ATATCCGG
1 ATATCCGG
147128529 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:147137890 original size:40 final size:40
Alignment explanation
Indices: 147137824--147137990 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
147137814 AAATTGAATG
* * *
147137824 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
147137863 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
147137903 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
147137943 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
147137983 ATATCCGG
1 ATATCCGG
147137991 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:147143265 original size:15 final size:15
Alignment explanation
Indices: 147143247--147143306 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
147143237 AACCCTTATC
*
147143247 CTATTAGACACATCA
1 CTATCAGACACATCA
*
147143262 CTATCAGATACATCA
1 CTATCAGACACATCA
* * * *
147143277 TTAACAAACCCATCA
1 CTATCAGACACATCA
*
147143292 CTAACAGACACATCA
1 CTATCAGACACATCA
147143307 AACTTAGACA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.43, C:0.30, G:0.05, T:0.22
Consensus pattern (15 bp):
CTATCAGACACATCA
Found at i:147144568 original size:43 final size:43
Alignment explanation
Indices: 147144362--147144592 Score: 228
Period size: 43 Copynumber: 5.4 Consensus size: 43
147144352 TGGCGTTTTT
** * *
147144362 TAGAACATGACCTTTAGCGGCGTTTTTCACACAAACGCTGCTA
1 TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
* * *
147144405 TAGAACATGACCTTTAGCAGCACTTTTCCTACAAACGCCACTA
1 TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
* * * * * ** *
147144448 TAGAATATGACTTTTAGCAGCACCTTTCCCATAAACTTCACTA
1 TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
* * *
147144491 TAGAACGTGACATTTAGCGGCATTTTTCCCACAAACGCCGCTA
1 TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
** * * * *
147144534 TAGAACATGACCTTTAGCGGTGCCTTTACTACAAATGCCGCTA
1 TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
* *
147144577 TAGAACGTGAGCTTTA
1 TAGAACATGACCTTTA
147144593 ACTGCGCTTT
Statistics
Matches: 153, Mismatches: 35, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCGCTA
Found at i:147144617 original size:43 final size:43
Alignment explanation
Indices: 147144362--147144619 Score: 122
Period size: 43 Copynumber: 6.0 Consensus size: 43
147144352 TGGCGTTTTT
* ** * *
147144362 TAGAACATGACCTTTAGCGGCGTTTTTCAC-ACAAACGCTGCTA
1 TAGAACATGACCTTTAACGGCGCCTTT-ACTAAAAACGCCGCTA
* * * * * * *
147144405 TAGAACATGACCTTTAGCAGCACTTTTCCTACAAACGCCACTA
1 TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
* * * * * * * * ** *
147144448 TAGAATATGACTTTTAGCAGCACCTTTCCCATAAACTTCACTA
1 TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
* * * *** * * *
147144491 TAGAACGTGACATTTAGCGGCATTTTTCCCACAAACGCCGCTA
1 TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
* * * *
147144534 TAGAACATGACCTTTAGCGGTGCCTTTACTACAAATGCCGCTA
1 TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
* * * * **
147144577 TAGAACGTGAGCTTTAACTGCGCTTTTGTTAAAAACGCCGCTA
1 TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
147144620 AATGTCATGT
Statistics
Matches: 172, Mismatches: 42, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
42 1 0.01
43 171 0.99
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
TAGAACATGACCTTTAACGGCGCCTTTACTAAAAACGCCGCTA
Found at i:147148341 original size:9 final size:9
Alignment explanation
Indices: 147148327--147148367 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
147148317 TGATGTTTAT
*
147148327 TTATGTTAG
1 TTATGTAAG
*
147148336 TTATGTAAA
1 TTATGTAAG
147148345 TTATGTAAG
1 TTATGTAAG
147148354 TTATGTAAG
1 TTATGTAAG
147148363 TTATG
1 TTATG
147148368 ACATTTATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:147152967 original size:13 final size:13
Alignment explanation
Indices: 147152949--147152974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
147152939 ACGGAGATCG
147152949 ACATGGCCGTGTA
1 ACATGGCCGTGTA
147152962 ACATGGCCGTGTA
1 ACATGGCCGTGTA
147152975 CACTAATGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGGCCGTGTA
Found at i:147156061 original size:18 final size:18
Alignment explanation
Indices: 147156000--147156061 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
147155990 CGTATCAACA
*
147156000 TTATGTGAGGTATGTAAG
1 TTATGTAAGGTATGTAAG
* * * *
147156018 TTATGATATGATATAT-AT
1 TTATG-TAAGGTATGTAAG
147156036 TTATGTAAGGTATGTAAG
1 TTATGTAAGGTATGTAAG
147156054 TTATGTAA
1 TTATGTAA
147156062 TTTTAAAGAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
17 7 0.21
18 20 0.61
19 6 0.18
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.44
Consensus pattern (18 bp):
TTATGTAAGGTATGTAAG
Found at i:147157454 original size:32 final size:31
Alignment explanation
Indices: 147157399--147157465 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 31
147157389 AAATAATGTG
*
147157399 ATATATAAATTTTTATTTAATTTAATTATAT
1 ATATATAAATTTTTATTTAATTTAATTATAC
*
147157430 ATATATGAAA-TTTTATTTTTATTTAATTATAC
1 ATATAT-AAATTTTTA-TTTAATTTAATTATAC
147157462 ATAT
1 ATAT
147157466 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 11 0.34
32 21 0.66
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (31 bp):
ATATATAAATTTTTATTTAATTTAATTATAC
Found at i:147161695 original size:40 final size:40
Alignment explanation
Indices: 147161636--147161803 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
147161626 TGAATGATAC
* * * *
147161636 CCGGGCTAAGTCCCCAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
147161676 CCGGGCTAAGACCCGAAGGCATTCGTGCGAATTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGATTATAT
* ** *
147161716 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * ** *
147161756 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
147161796 CC-GGCTAA
1 CCGGGCTAA
147161804 ATTCCGAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 8 0.08
40 93 0.89
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:147161793 original size:80 final size:80
Alignment explanation
Indices: 147161636--147161803 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 80
147161626 TGAATGATAC
* * ** *
147161636 CCGGGCTAAGTCCCCAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCCAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
147161701 TGCGAATTGTTATAT
66 TGCGAATGGTTATAT
* * * *
147161716 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCCAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
***
147161780 GTGCTTGTGGTTATAT
65 GTGCGAATGGTTATAT
147161796 CC-GGCTAA
1 CCGGGCTAA
147161804 ATTCCGAAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 65 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCCAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAATGGTTATAT
Found at i:147168216 original size:19 final size:18
Alignment explanation
Indices: 147168192--147168241 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 18
147168182 GGATTTTGAT
147168192 TTGGGGAAAATTTAGGGA
1 TTGGGGAAAATTTAGGGA
147168210 TTAGGGG-AAATTTAGGGAA
1 TT-GGGGAAAATTTAGGG-A
147168229 TTGGGGAAAATTT
1 TTGGGGAAAATTT
147168242 GTTGGGGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 16 0.55
19 13 0.45
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (18 bp):
TTGGGGAAAATTTAGGGA
Found at i:147169023 original size:7 final size:7
Alignment explanation
Indices: 147169011--147169092 Score: 65
Period size: 7 Copynumber: 11.7 Consensus size: 7
147169001 CAAATTTTAT
147169011 CCCTAAA
1 CCCTAAA
147169018 CCCTAAA
1 CCCTAAA
*
147169025 GCCTAAA
1 CCCTAAA
* *
147169032 CACTAGA
1 CCCTAAA
147169039 CCCTAAA
1 CCCTAAA
* *
147169046 CCATATA
1 CCCTAAA
**
147169053 CATTAAA
1 CCCTAAA
*
147169060 TCCTAAA
1 CCCTAAA
147169067 CCCTAAA
1 CCCTAAA
** *
147169074 CTATACA
1 CCCTAAA
147169081 CCCTAAA
1 CCCTAAA
147169088 CCCTA
1 CCCTA
147169093 TATATATTAC
Statistics
Matches: 54, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
7 54 1.00
ACGTcount: A:0.43, C:0.35, G:0.02, T:0.20
Consensus pattern (7 bp):
CCCTAAA
Found at i:147169085 original size:21 final size:21
Alignment explanation
Indices: 147169013--147169092 Score: 81
Period size: 21 Copynumber: 3.8 Consensus size: 21
147169003 AATTTTATCC
*
147169013 CTAAACCCTAAAGCCTAAACA
1 CTAAACCCTAAACCCTAAACA
* * *
147169034 CTAGACCCTAAACCATATACA
1 CTAAACCCTAAACCCTAAACA
* *
147169055 TTAAATCCTAAACCCTAAACTA
1 CTAAACCCTAAACCCTAAAC-A
*
147169077 -TACACCCTAAACCCTA
1 CTAAACCCTAAACCCTA
147169093 TATATATTAC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
21 46 0.98
22 1 0.02
ACGTcount: A:0.44, C:0.34, G:0.03, T:0.20
Consensus pattern (21 bp):
CTAAACCCTAAACCCTAAACA
Found at i:147169232 original size:7 final size:7
Alignment explanation
Indices: 147169222--147169403 Score: 60
Period size: 7 Copynumber: 25.4 Consensus size: 7
147169212 TTGACCCTTA
147169222 AAACCCT
1 AAACCCT
*
147169229 AAACACT
1 AAACCCT
147169236 AAGACCCT
1 AA-ACCCT
**
147169244 -AACTAT
1 AAACCCT
*
147169250 AAGACACT
1 AA-ACCCT
*
147169258 AAACCCC
1 AAACCCT
*
147169265 AAACCAT
1 AAACCCT
* *
147169272 AAAACAT
1 AAACCCT
* *
147169279 AAATCAT
1 AAACCCT
*
147169286 AAACCTT
1 AAACCCT
*
147169293 AAAACACT
1 -AAACCCT
*
147169301 AAACTCT
1 AAACCCT
*
147169308 AAACCCA
1 AAACCCT
**
147169315 AAATACT
1 AAACCCT
**
147169322 AAACATT
1 AAACCCT
*
147169329 AAACCAT
1 AAACCCT
147169336 AAACCCT
1 AAACCCT
* *
147169343 AAAATCAT
1 -AAACCCT
147169351 AAACCCT
1 AAACCCT
*
147169358 AAAACCTT
1 -AAACCCT
*
147169366 AAACCTT
1 AAACCCT
**
147169373 AAACATT
1 AAACCCT
* *
147169380 AAATCTT
1 AAACCCT
*
147169387 AAAACCT
1 AAACCCT
147169394 AAACCCT
1 AAACCCT
147169401 AAA
1 AAA
147169404 ATAAAATTAT
Statistics
Matches: 131, Mismatches: 38, Indels: 12
0.72 0.21 0.07
Matches are distributed among these distances:
6 3 0.02
7 103 0.79
8 25 0.19
ACGTcount: A:0.52, C:0.27, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:147169281 original size:21 final size:22
Alignment explanation
Indices: 147169229--147169304 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
147169219 TTAAAACCCT
* *
147169229 AAACACTAAGACC-CTAACTATA
1 AAACACTAA-ACCACAAACCATA
* *
147169251 AGACACTAAACCCCAAACCATA
1 AAACACTAAACCACAAACCATA
* * *
147169273 AAACA-TAAATCATAAACCTTA
1 AAACACTAAACCACAAACCATA
147169294 AAACACTAAAC
1 AAACACTAAAC
147169305 TCTAAACCCA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
21 20 0.47
22 23 0.53
ACGTcount: A:0.54, C:0.28, G:0.03, T:0.16
Consensus pattern (22 bp):
AAACACTAAACCACAAACCATA
Found at i:147169353 original size:15 final size:14
Alignment explanation
Indices: 147169328--147169404 Score: 66
Period size: 15 Copynumber: 5.4 Consensus size: 14
147169318 TACTAAACAT
*
147169328 TAAACCATAAACCC
1 TAAAACATAAACCC
147169342 TAAAATCATAAACCC
1 TAAAA-CATAAACCC
*
147169357 TAAAACCTTAAA-CC
1 TAAAA-CATAAACCC
* * *
147169371 TTAAACATTAAATCT
1 TAAAACA-TAAACCC
*
147169386 TAAAACCTAAACCC
1 TAAAACATAAACCC
147169400 TAAAA
1 TAAAA
147169405 TAAAATTATT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 24 0.48
15 25 0.50
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAACATAAACCC
Found at i:147176970 original size:40 final size:40
Alignment explanation
Indices: 147176911--147177052 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
147176901 AAATTGAATG
* * *
147176911 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
147176951 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
147176991 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
147177031 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
147177053 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:147177076 original size:40 final size:40
Alignment explanation
Indices: 147176949--147177078 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
147176939 ATGCTGGAAA
* * *
147176949 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
147176989 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
147177029 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
147177069 TTATATCCGG
1 TTATATCCGG
147177079 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:147186452 original size:40 final size:40
Alignment explanation
Indices: 147186407--147186536 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
147186397 CGGAATACAA
147186407 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
147186447 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
147186487 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
147186527 CCGGATATAA
1 CCGGATATAA
147186537 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:147186551 original size:40 final size:40
Alignment explanation
Indices: 147186407--147186573 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
147186397 CGGAATACAA
* **
147186407 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
147186447 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
147186487 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
147186527 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
147186566 CCGGATAT
1 CCGGATAT
147186574 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
39 15 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:147194498 original size:40 final size:40
Alignment explanation
Indices: 147194453--147194582 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
147194443 CGGAATACAA
147194453 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
147194493 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
147194533 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
147194573 CCGGATATAA
1 CCGGATATAA
147194583 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:147194597 original size:40 final size:40
Alignment explanation
Indices: 147194453--147194615 Score: 143
Period size: 40 Copynumber: 4.1 Consensus size: 40
147194443 CGGAATACAA
* **
147194453 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
147194493 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
147194533 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
147194573 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
147194613 CCG
1 CCG
147194616 AGTATCATTC
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 97 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:147200544 original size:46 final size:44
Alignment explanation
Indices: 147200389--147200655 Score: 202
Period size: 46 Copynumber: 5.7 Consensus size: 44
147200379 GGGGTGAGAT
* * *
147200389 GCCGATGCCATGTCCCAGACATAGTCTTACACAGGCTCTAGCATAC-CTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACAC-TG-ACTA-CAT-CTCGA
*
147200438 TGCCGATGACATGTCCCAGACATGGTCTTACACTGAC-ACATCTCATA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTC-GA
*
147200485 GCCAATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGA
** * * *
147200530 GCCCGATATATGTCCTAGACATGTCTTACACTAGCACT-CGTCTCAA
1 G-CCGATGCATGTCCCAGACATGTCTTACACT-G-ACTACATCTCGA
* *
147200576 TGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCACAATAT-G-
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT-G-ACT-AC-ATCTCGA
147200625 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
147200656 AGCTCACAAT
Statistics
Matches: 184, Mismatches: 20, Indels: 30
0.79 0.09 0.13
Matches are distributed among these distances:
44 13 0.07
45 17 0.09
46 64 0.35
47 32 0.17
48 24 0.13
49 1 0.01
50 31 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGA
Found at i:147200604 original size:94 final size:93
Alignment explanation
Indices: 147200387--147200663 Score: 309
Period size: 94 Copynumber: 3.0 Consensus size: 93
147200377 ATGGGGTGAG
* *
147200387 ATGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCTCTAGCATAC-CTATGCCGATGACATG
1 ATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTA-CAT-CTCGA-GCCGAT-ACATG
147200451 TCCCAGACATGGTCTTACACT-G-ACACATCTC
62 TCCCAGACAT-GTCTTACACTAGCACACATCTC
* * *
147200482 ATAGCCAATG-CATGTCCCAGACAT-GTCTTACACTGACT-TACATCTCGAGCCCGATATATGTC
1 AT-GCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTACATCTCGAG-CCGATACATGTC
* * *
147200544 CTAGACATGTCTTACACTAGCACTCGTCTC
64 CCAGACATGTCTTACACTAGCACACATCTC
* *
147200574 AATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCACAATAT-G-GCCGATGCATGT
1 -ATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCT-AC-ATCTCGAGCCGATACATGT
*
147200637 CCCAGACATGTCTTACACTAGCTCACA
63 CCCAGACATGTCTTACACTAGCACACA
147200664 ATATCCCATA
Statistics
Matches: 154, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
90 10 0.06
91 16 0.10
92 23 0.15
93 18 0.12
94 57 0.37
95 18 0.12
96 9 0.06
97 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (93 bp):
ATGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTACATCTCGAGCCGATACATGTCCC
AGACATGTCTTACACTAGCACACATCTC
Found at i:147203701 original size:39 final size:39
Alignment explanation
Indices: 147203647--147203809 Score: 281
Period size: 39 Copynumber: 4.2 Consensus size: 39
147203637 TGTGTATGAA
*
147203647 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
147203686 TGTGCGAGTTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
147203725 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
147203764 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
147203804 TGTGCG
1 TGTGCG
147203810 GGTTATCATA
Statistics
Matches: 118, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 101 0.86
40 17 0.14
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:147203827 original size:78 final size:78
Alignment explanation
Indices: 147203664--147203838 Score: 253
Period size: 78 Copynumber: 2.2 Consensus size: 78
147203654 ATTGTGATAT
*
147203664 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCTGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* * *
147203729 CGAGTTGTGATAT
66 CGAGTTATCATAA
* *
147203742 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
*
147203807 GCGGGTTATCATAA
65 GCGAGTTATCATAA
*
147203821 CC-GGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
147203839 TGTTTGAACA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
78 53 0.61
79 34 0.39
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTATCATAA
Found at i:147211667 original size:39 final size:40
Alignment explanation
Indices: 147211605--147211758 Score: 213
Period size: 39 Copynumber: 3.9 Consensus size: 40
147211595 TGTGTATGAA
*
147211605 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
*
147211644 TGTGAGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
147211683 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * * *
147211723 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
147211759 TGTTTGAACA
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 62 0.60
40 41 0.40
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:147211745 original size:79 final size:79
Alignment explanation
Indices: 147211605--147211758 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
147211595 TGTGTATGAA
* * *
147211605 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGAGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGAGAGTTATCATAACCGGGCTAA
147211670 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
147211683 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGAGAGTTATCATAACCGGGCTA
*
147211748 TGTCCCGAAGG
65 AGTCCCGAAGG
147211759 TGTTTGAACA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGAGAGTTATCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:147213753 original size:17 final size:18
Alignment explanation
Indices: 147213731--147213764 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
147213721 TTCTGAGCTA
147213731 TGTGGGC-CACACGGGCG
1 TGTGGGCGCACACGGGCG
*
147213748 TGTGGGCGCACATGGGC
1 TGTGGGCGCACACGGGC
147213765 CACGATATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.26, G:0.47, T:0.15
Consensus pattern (18 bp):
TGTGGGCGCACACGGGCG
Found at i:147213912 original size:27 final size:27
Alignment explanation
Indices: 147213880--147214197 Score: 288
Period size: 27 Copynumber: 11.9 Consensus size: 27
147213870 CCTTAATTGA
* * *
147213880 TAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * *
147213907 TGAAATGATTATTTTTCCCTTAT-ATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
147213934 TGAAATGACTGTTTTACCCTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
147213961 TGAAATGACTGTTTTGCCCTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
147213988 TAAAATGACTGTTTTGCCTTTGTGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
147214015 TAAAATGA---TTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
147214039 TAAAACGATTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
147214066 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * *
147214093 TGAAATAACTATTTTGCCCTTATAAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* ** *
147214120 CAAAATGGTTATTTTGCCCTTATGTA-G
1 TAAAATGACTGTTTTGCCCTTATG-AGG
* *
147214147 TAAAATGATTGTTTTGCCCTT-TTATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
147214174 TAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTGTTTTGCCCTTATG
147214198 TGATATATGT
Statistics
Matches: 244, Mismatches: 38, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
24 20 0.08
25 1 0.00
26 1 0.00
27 219 0.90
28 3 0.01
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:147214135 original size:132 final size:132
Alignment explanation
Indices: 147213890--147214156 Score: 327
Period size: 132 Copynumber: 2.0 Consensus size: 132
147213880 TAAAATGACT
* * * * * * *
147213890 ATTTTTCCCTTATGTGGTGAAATGATTATTTTTCCCTTATATGGTGAAATGACTGTTTTACCCTT
1 ATTTTGCCCTTATGAGGTAAAACGATTATTTTGCCCTTATAGGGTAAAATGACTGTTTTACCCTT
* * * * * * * * * *
147213955 GTGAGGTGAAATGACTGTTTTGCCCTTGTGAGGTAAAATGACTGTTTTGCCTTTGTGGGGTAAAA
66 ATGAGGTGAAATAACTATTTTGCCCTTATAAGGCAAAATGACTATTTTGCCCTTATGGAGTAAAA
147214020 TG
131 TG
* * *
147214022 ATTTTGCCCTTATGAGGTAAAACGATTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTT
1 ATTTTGCCCTTATGAGGTAAAACGATTATTTTGCCCTTATAGGGTAAAATGACTGTTTTACCCTT
** *
147214087 ATGAGGTGAAATAACTATTTTGCCCTTATAAGGCAAAATGGTTATTTTGCCCTTATGTAGTAAAA
66 ATGAGGTGAAATAACTATTTTGCCCTTATAAGGCAAAATGACTATTTTGCCCTTATGGAGTAAAA
147214152 TG
131 TG
147214154 ATT
1 ATT
147214157 GTTTTGCCCT
Statistics
Matches: 112, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
132 112 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (132 bp):
ATTTTGCCCTTATGAGGTAAAACGATTATTTTGCCCTTATAGGGTAAAATGACTGTTTTACCCTT
ATGAGGTGAAATAACTATTTTGCCCTTATAAGGCAAAATGACTATTTTGCCCTTATGGAGTAAAA
TG
Found at i:147214532 original size:18 final size:18
Alignment explanation
Indices: 147214509--147214544 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
147214499 GACTTGCATG
*
147214509 CTGTTTACTGTTACTGCA
1 CTGTTTACTATTACTGCA
147214527 CTGTTTACTATTACTGCA
1 CTGTTTACTATTACTGCA
147214545 ATGGGCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (18 bp):
CTGTTTACTATTACTGCA
Found at i:147218320 original size:23 final size:23
Alignment explanation
Indices: 147218293--147218367 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
147218283 CGAATGGCCA
147218293 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
147218316 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
147218340 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
147218363 ATGTG
1 ATGTG
147218368 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:147218336 original size:47 final size:47
Alignment explanation
Indices: 147218268--147218436 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
147218258 CCTGTATATA
*
147218268 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
147218315 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
147218362 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
147218409 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
147218437 CGAAATGTGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:147218476 original size:46 final size:46
Alignment explanation
Indices: 147218410--147218499 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
147218400 GAACATGTAT
* * *
147218410 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
147218456 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
147218500 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:147218508 original size:2 final size:2
Alignment explanation
Indices: 147218501--147218529 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
147218491 GTATGAGATG
147218501 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
147218530 TGTGGCCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:147220859 original size:40 final size:40
Alignment explanation
Indices: 147220790--147221330 Score: 913
Period size: 40 Copynumber: 13.6 Consensus size: 40
147220780 AGTTGTATAG
* * * *
147220790 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147220830 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
147220870 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
147220910 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147220950 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
147220990 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147221030 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
147221070 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
147221110 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147221150 CCGGACTAAATCCCGGAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147221190 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147221230 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
147221270 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
***
147221310 CCGG-CTGGGTCCCGAAGAGCA
1 CCGGACTAAATCCCGAAGAGCA
147221331 ATCATGCTGG
Statistics
Matches: 477, Mismatches: 24, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 14 0.03
40 463 0.97
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:147224112 original size:23 final size:23
Alignment explanation
Indices: 147224085--147224159 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
147224075 CGAATGGCCA
147224085 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
147224108 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
147224132 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
147224155 ATGTG
1 ATGTG
147224160 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:147224128 original size:47 final size:47
Alignment explanation
Indices: 147224060--147224228 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
147224050 CCTGTATATA
*
147224060 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
147224107 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
147224154 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
147224201 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
147224229 CGAAATGTGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 116 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:147224268 original size:46 final size:46
Alignment explanation
Indices: 147224202--147224291 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 46
147224192 GAACATGTAT
* * *
147224202 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
* *
147224248 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGAT
147224292 GTATATATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATAG
Found at i:147224300 original size:2 final size:2
Alignment explanation
Indices: 147224293--147224317 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
147224283 GTATGAGATG
147224293 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
147224318 TGTGGCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:147226361 original size:41 final size:42
Alignment explanation
Indices: 147226316--147226395 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
147226306 TGATGATTCT
* * * *
147226316 TGTAACAC-CCTAACCTATATCCGTTGCCAAAATAGGGTACG
1 TGTAACACACCAAACCCATATCCATCGCCAAAATAGGGTACG
*
147226357 TGTAACACACCAAACCCATATCCATCGCCAAACTAGGGT
1 TGTAACACACCAAACCCATATCCATCGCCAAAATAGGGT
147226396 TAAGAGACAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 8 0.24
42 25 0.76
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (42 bp):
TGTAACACACCAAACCCATATCCATCGCCAAAATAGGGTACG
Found at i:147228176 original size:64 final size:63
Alignment explanation
Indices: 147228095--147228278 Score: 183
Period size: 67 Copynumber: 2.9 Consensus size: 63
147228085 AGACATTATG
*
147228095 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * *
147228158 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGCAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
147228223 TA
62 TA
* * * * *
147228225 A-GCTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATG-TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
147228279 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 9 0.09
66 18 0.19
67 29 0.30
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:147232558 original size:68 final size:67
Alignment explanation
Indices: 147232481--147232630 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
147232471 CATCACGTGT
* * * *
147232481 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
147232543 ATGTAG
62 ATGTAG
** * *
147232549 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
147232614 AG
66 AG
147232616 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
147232631 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:147232586 original size:64 final size:64
Alignment explanation
Indices: 147232505--147232688 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
147232495 AGACATTATG
* *
147232505 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
147232569 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
147232634 AA
63 AA
* * * *
147232636 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
147232689 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:147242453 original size:31 final size:33
Alignment explanation
Indices: 147242390--147242463 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
147242380 AAAATGAAAA
* *
147242390 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
*
147242423 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
147242454 TAAA-TATTAA
1 TAAATTATTAA
147242464 ATAATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 12 0.32
32 7 0.18
33 13 0.34
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
TAAATTATTAATTTATTCTAATTATACTTAAAT
Found at i:147242469 original size:10 final size:10
Alignment explanation
Indices: 147242456--147242675 Score: 97
Period size: 11 Copynumber: 21.4 Consensus size: 10
147242446 ACTTAAATTA
*
147242456 AATATTAAAT
1 AATAATAAAT
147242466 AATAATAAAT
1 AATAATAAAT
** *
147242476 TCTAAATATACT
1 AAT-AATA-AAT
147242488 AA-ATATAAAT
1 AATA-ATAAAT
147242498 AATAACTAAAT
1 AATAA-TAAAT
147242509 AATAACTAAAT
1 AATAA-TAAAT
147242520 AGA-AAT--A-
1 A-ATAATAAAT
147242527 AA-AATAAAT
1 AATAATAAAT
147242536 AATAACTAAAT
1 AATAA-TAAAT
147242547 AGA-AATAAAAT
1 A-ATAAT-AAAT
147242558 AATAACTAAAT
1 AATAA-TAAAT
147242569 AGA-AATAAA-
1 A-ATAATAAAT
*
147242578 AAT-ATATAT
1 AATAATAAAT
* *
147242587 AAAAATATAT
1 AATAATAAAT
147242597 -ATAAT-AAT
1 AATAATAAAT
147242605 AATATATAAA-
1 AATA-ATAAAT
*
147242615 AATAATATAT
1 AATAATAAAT
*
147242625 AAATTATAAAT
1 -AATAATAAAT
147242636 AGATAATATAAT
1 A-ATAATA-AAT
147242648 AATAGATAGAAT
1 AATA-ATA-AAT
147242660 AATAAAATAAAT
1 AAT--AATAAAT
147242672 AATA
1 AATA
147242676 TAGAAATATA
Statistics
Matches: 165, Mismatches: 16, Indels: 58
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 9 0.05
9 16 0.10
10 39 0.24
11 67 0.41
12 25 0.15
13 3 0.02
14 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:147242589 original size:22 final size:24
Alignment explanation
Indices: 147242505--147242585 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 24
147242495 AATAATAACT
147242505 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
147242528 AAATAAATAATAACTAAATAGAAAT-A
1 AAAT--AT-ATAACTAAATAGAAATAA
147242554 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
147242577 AAATATATA
1 AAATATATA
147242586 TAAAAATATA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
22 16 0.31
23 10 0.19
24 4 0.08
25 1 0.02
26 5 0.10
27 16 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAATATATAACTAAATAGAAATAA
Found at i:147242594 original size:12 final size:13
Alignment explanation
Indices: 147242573--147242627 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
147242563 CTAAATAGAA
147242573 ATAAAAAT-ATAT
1 ATAAAAATAATAT
147242585 ATAAAAAT-ATAT
1 ATAAAAATAATAT
*
147242597 ATAATAATAATAT
1 ATAAAAATAATAT
147242610 ATAAAAATAATAT
1 ATAAAAATAATAT
147242623 ATAAA
1 ATAAA
147242628 TTATAAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 19 0.47
13 21 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAAAAATAATAT
Found at i:147242608 original size:15 final size:15
Alignment explanation
Indices: 147242579--147242675 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
147242569 AGAAATAAAA
*
147242579 ATATAT-ATAAAAAT
1 ATATATAATAATAAT
147242593 ATATATAATAATAAT
1 ATATATAATAATAAT
147242608 ATATA-AA-AATAAT
1 ATATATAATAATAAT
*
147242621 ATATA-AATTATAA-
1 ATATATAATAATAAT
*
147242634 ATAGATAATATAATAAT
1 ATATAT-A-ATAATAAT
* * *
147242651 AGATAGAATAATAAA
1 ATATATAATAATAAT
*
147242666 ATAAATAATA
1 ATATATAATA
147242676 TAGAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 17 0.26
14 12 0.18
15 27 0.41
16 7 0.11
17 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAATAATAAT
Found at i:147242618 original size:43 final size:42
Alignment explanation
Indices: 147242522--147242685 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
147242512 AACTAAATAG
* * * * *
147242522 AAATAAAAATAAATAATAA-CTAAATAGAAATAAAATAATAACT
1 AAATAAAAATAAA-AATAATATAAAAATATATATAATAATAA-T
*
147242565 AAATAGAAATAAAAATATATATAAAAATATATATAATAATAAT
1 AAATAAAAATAAAAATA-ATATAAAAATATATATAATAATAAT
* *
147242608 ATATAAAAATAATATATAAATTATAAATAGATA-ATATAATAATAGAT
1 AAATAAAAATAA-AAAT-AA-TATAAA-A-ATATATATAATAATA-AT
* *
147242655 AGAATAATAAA-ATAAATAATATAGAAATATA
1 A-AATAA-AAATAAAAATAATATAAAAATATA
147242686 GATTTATAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.04
43 27 0.28
44 23 0.24
45 12 0.12
46 14 0.14
47 9 0.09
48 5 0.05
49 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATAAAAATAAAAATAATATAAAAATATATATAATAATAAT
Found at i:147242618 original size:49 final size:50
Alignment explanation
Indices: 147242481--147242677 Score: 139
Period size: 49 Copynumber: 4.0 Consensus size: 50
147242471 TAAATTCTAA
* *
147242481 ATATACTAAATATAAATAATAACTAA-ATAATAACTAAATAGAAATAAAAATA-
1 ATATAATAAATATATATAATAA-TAATAT-ATAAC-AAATA-AAATAAAAATAT
* * *
147242533 A-ATAATAACTAAATAGAAATAA-AATA-ATAACTAAATAGAAATAAAAATAT
1 ATATAATAAATATATA-TAATAATAATATATAAC-AAATA-AAATAAAAATAT
* *
147242583 ATATAA-AAATATATATAATAATAATATATAA-AAATAATATATAAAT-T
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
* * * *
147242630 ATA-AATAGATA-ATATAATAAT-AGATAGAA-TAATAAAATAAATAATAT
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAA-AATAT
147242677 A
1 A
147242678 GAAATATAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 23
0.75 0.10 0.14
Matches are distributed among these distances:
45 15 0.12
46 15 0.12
47 10 0.08
48 8 0.07
49 33 0.28
50 14 0.12
51 19 0.16
52 6 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (50 bp):
ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
Found at i:147242646 original size:20 final size:20
Alignment explanation
Indices: 147242621--147242724 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
147242611 TAAAAATAAT
147242621 ATATAAATTATAAATAGATA
1 ATATAAATTATAAATAGATA
* *
147242641 ATAT-AATAATAGATAGAATA
1 ATATAAATTATAAATAG-ATA
*
147242661 ATA-AAATAAATAATATAGA-A
1 ATATAAAT-TATAA-ATAGATA
* *
147242681 ATATAGATTTATAAATCGA-A
1 ATATA-AATTATAAATAGATA
*
147242701 ATAT--ATTA-ATATA-ATA
1 ATATAAATTATAAATAGATA
147242717 ATATAAAT
1 ATATAAAT
147242725 ATTATTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.02
16 8 0.12
17 3 0.05
18 2 0.03
19 10 0.15
20 26 0.39
21 10 0.15
22 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (20 bp):
ATATAAATTATAAATAGATA
Found at i:147242682 original size:15 final size:14
Alignment explanation
Indices: 147242523--147242683 Score: 55
Period size: 13 Copynumber: 11.8 Consensus size: 14
147242513 ACTAAATAGA
147242523 AATA-AAAATAAAT
1 AATATAAAATAAAT
*
147242536 AATAACTAAATAGAAAT
1 AAT-A-TAAA-ATAAAT
* *
147242553 AA-A-ATAATAACT
1 AATATAAAATAAAT
147242565 AA-ATAGAAATAAA-
1 AATATA-AAATAAAT
147242578 AATATATATAA-AAAT
1 AATATA-A-AATAAAT
*
147242593 -ATATATAAT-AAT
1 AATATAAAATAAAT
*
147242605 AATATATAA-AAAT
1 AATATAAAATAAAT
147242618 AATAT---ATAAAT
1 AATATAAAATAAAT
*
147242629 --TAT-AAATAGAT
1 AATATAAAATAAAT
*
147242640 AATATAATAATAGATAG
1 AATATAA-AATA-A-AT
147242657 AATAATAAAATAAAT
1 AAT-ATAAAATAAAT
147242672 AATATAGAAATA
1 AATATA-AAATA
147242684 TAGATTTATA
Statistics
Matches: 113, Mismatches: 12, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.03
10 1 0.01
11 9 0.08
12 12 0.11
13 27 0.24
14 22 0.19
15 16 0.14
16 4 0.04
17 15 0.13
18 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (14 bp):
AATATAAAATAAAT
Found at i:147242730 original size:23 final size:23
Alignment explanation
Indices: 147242699--147242782 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
147242689 TTATAAATCG
147242699 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
147242721 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
147242747 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
147242769 AAATTAATATTAAT
1 AAA-TATTATTAAT
147242783 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:147242790 original size:26 final size:26
Alignment explanation
Indices: 147242703--147242791 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
147242693 AAATCGAAAT
147242703 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
147242726 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
147242749 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
147242775 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
147242792 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:147248448 original size:15 final size:15
Alignment explanation
Indices: 147248430--147248460 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
147248420 ATCTCTCATC
147248430 TATCTATCTATTTTT
1 TATCTATCTATTTTT
147248445 TATCTATCTATTTTT
1 TATCTATCTATTTTT
147248460 T
1 T
147248461 CTTTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TATCTATCTATTTTT
Found at i:147249162 original size:16 final size:17
Alignment explanation
Indices: 147249135--147249168 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
147249125 AAATGGATTT
147249135 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
147249152 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
147249168 A
1 A
147249169 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:147250098 original size:15 final size:15
Alignment explanation
Indices: 147250069--147250130 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
147250059 GTAGAAAGCC
* *
147250069 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
147250084 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
147250099 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
147250117 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
147250131 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:147250108 original size:16 final size:16
Alignment explanation
Indices: 147250087--147250137 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
147250077 TTTCTAGTAT
*
147250087 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
147250103 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
147250119 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
147250135 TTT
1 TTT
147250138 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:147251488 original size:13 final size:14
Alignment explanation
Indices: 147251455--147251488 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
147251445 GCCCGGAGGC
*
147251455 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
147251469 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
147251483 TGAAAA
1 T-AAAA
147251489 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:147252782 original size:16 final size:16
Alignment explanation
Indices: 147252761--147252811 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 16
147252751 AAATAAATAT
147252761 ATAATAATATATAAAA
1 ATAATAATATATAAAA
*
147252777 ATAATATTAATATATAAAT
1 AT-A-A-TAATATATAAAA
*
147252796 ATAAAAATATATAAAA
1 ATAATAATATATAAAA
147252812 TATTTAGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 12 0.41
17 2 0.07
18 2 0.07
19 13 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAATAATATATAAAA
Found at i:147252803 original size:25 final size:24
Alignment explanation
Indices: 147252759--147252868 Score: 84
Period size: 25 Copynumber: 4.5 Consensus size: 24
147252749 AGAAATAAAT
147252759 ATATAATAATATATAAAAATAATATTA
1 ATAT-ATAA-ATATAAAAAT-ATATTA
*
147252786 ATATATAAATATAAAAATATATAAA
1 ATATATAAATATAAAAATATAT-TA
* *
147252811 ATATTTAGATAT-AAAATAT-TTA
1 ATATATAAATATAAAAATATATTA
* *
147252833 GA-ATATATATA-ATAAAATAGATATA
1 -ATATATAAATATA-AAAATATAT-TA
147252858 ATATATAAATA
1 ATATATAAATA
147252869 AATTGAATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
22 8 0.12
23 8 0.12
24 13 0.19
25 31 0.46
26 4 0.06
27 4 0.06
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
ATATATAAATATAAAAATATATTA
Found at i:147252824 original size:15 final size:16
Alignment explanation
Indices: 147252804--147252839 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
147252794 ATATAAAAAT
147252804 ATATAAAATATTTAG-
1 ATATAAAATATTTAGA
147252819 ATATAAAATATTTAGA
1 ATATAAAATATTTAGA
147252835 ATATA
1 ATATA
147252840 TATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATAAAATATTTAGA
Found at i:147252838 original size:33 final size:33
Alignment explanation
Indices: 147252753--147252868 Score: 101
Period size: 37 Copynumber: 3.2 Consensus size: 33
147252743 AAAAATAGAA
147252753 ATAAATATATAATAATATATAAAAATAATATTAATAT
1 ATAAATATA-AA-AATATAT-AAAAT-ATATTAATAT
147252790 ATAAATATAAAAATATATAAAATAT-TTAGATAT
1 ATAAATATAAAAATATATAAAATATATTA-ATAT
*
147252823 A-AAATATTTAGAATATATATAATAAAATAGATATAATAT
1 ATAAATA--TA-AA-A-ATAT-ATAAAATATAT-TAATAT
147252862 ATAAATA
1 ATAAATA
147252869 AATTGAATAT
Statistics
Matches: 68, Mismatches: 1, Indels: 17
0.79 0.01 0.20
Matches are distributed among these distances:
32 8 0.12
33 7 0.10
34 7 0.10
35 9 0.13
36 3 0.04
37 13 0.19
38 8 0.12
39 6 0.09
40 7 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (33 bp):
ATAAATATAAAAATATATAAAATATATTAATAT
Found at i:147252869 original size:25 final size:24
Alignment explanation
Indices: 147252757--147252868 Score: 106
Period size: 23 Copynumber: 4.8 Consensus size: 24
147252747 ATAGAAATAA
*
147252757 ATATATAATA-ATATATA-AAAAT
1 ATATATAATATATAAATATAAAAT
147252779 A-ATATTAATATATAAATATAAAAAT
1 ATATA-TAATATATAAATAT-AAAAT
* * *
147252804 ATATAAAATATTTAGATATAAAAT
1 ATATATAATATATAAATATAAAAT
* * *
147252828 ATTTAGAATATATATA-ATAAAAT
1 ATATATAATATATAAATATAAAAT
*
147252851 AGATATAATATATAAATA
1 ATATATAATATATAAATA
147252869 AATTGAATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
21 3 0.04
22 6 0.08
23 25 0.35
24 18 0.25
25 17 0.24
26 3 0.04
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
ATATATAATATATAAATATAAAAT
Found at i:147252878 original size:22 final size:22
Alignment explanation
Indices: 147252759--147252889 Score: 81
Period size: 23 Copynumber: 5.7 Consensus size: 22
147252749 AGAAATAAAT
*
147252759 ATATAATA-ATATATAAAAATA-
1 ATATAATATATAAAT-AAAATAG
*
147252780 ATATTAATATATAAATATAAAAATAT
1 ATA-TAATATAT-AA-AT-AAAATAG
* * *
147252806 ATAAAATATTTAGATATAAAATAT
1 ATATAATATATA-A-ATAAAATAG
* *
147252830 TTAGAATATATATAATAAAATAG
1 ATATAATATATA-AATAAAATAG
*
147252853 ATATAATATATAAAT-AAATTG
1 ATATAATATATAAATAAAATAG
147252874 AATATAATAT-TAAATA
1 -ATATAATATATAAATA
147252890 GATAAATAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
21 13 0.14
22 17 0.19
23 20 0.22
24 19 0.21
25 19 0.21
26 3 0.03
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (22 bp):
ATATAATATATAAATAAAATAG
Found at i:147253295 original size:13 final size:13
Alignment explanation
Indices: 147253277--147253303 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
147253267 GTTATTCATA
147253277 ATTAATATGAATT
1 ATTAATATGAATT
147253290 ATTAATATGAATT
1 ATTAATATGAATT
147253303 A
1 A
147253304 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:147253492 original size:19 final size:21
Alignment explanation
Indices: 147253464--147253513 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
147253454 AAATTAAAAT
147253464 TTTATATATATA-TTTAT-TA
1 TTTATATATATATTTTATATA
*
147253483 TTTATCTATATATTTTATATA
1 TTTATATATATATTTTATATA
147253504 TTTA-ATATAT
1 TTTATATATAT
147253514 TTAATATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 10 0.37
21 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATATATATATTTTATATA
Found at i:147253612 original size:17 final size:17
Alignment explanation
Indices: 147253590--147253628 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
147253580 CTGACTCCAT
*
147253590 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
147253607 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
147253624 TTTTA
1 TTTTA
147253629 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:147253794 original size:15 final size:17
Alignment explanation
Indices: 147253764--147253795 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
147253754 GTCAAAATCT
147253764 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
147253781 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
147253796 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:147254445 original size:18 final size:18
Alignment explanation
Indices: 147254418--147254460 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
147254408 CGCATAAAAA
* *
147254418 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
147254436 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
147254454 GAAAGAA
1 GAAAGAA
147254461 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:147259205 original size:15 final size:15
Alignment explanation
Indices: 147259185--147259215 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
147259175 GACGGTTCCG
147259185 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
147259200 TGTGCTCTGATTCAT
1 TGTGCTCTGATTCAT
147259215 T
1 T
147259216 ACTGATACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.19, T:0.48
Consensus pattern (15 bp):
TGTGCTCTGATTCAT
Found at i:147262660 original size:20 final size:19
Alignment explanation
Indices: 147262630--147262713 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
147262620 GATGTTAGAA
147262630 TATTAATTCTATTATATATT
1 TATT-ATTCTATTATATATT
147262650 TATCTATTCTATTATATA--
1 TAT-TATTCTATTATATATT
*
147262668 TA-TATTCTAATATATATT
1 TATTATTCTATTATATATT
147262686 AGTATTATT-T-TTATATTATT
1 --TATTATTCTATTATA-TATT
147262706 TATCTATT
1 TAT-TATT
147262714 TCTTATCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
16 13 0.24
18 5 0.09
19 8 0.15
20 23 0.43
21 5 0.09
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (19 bp):
TATTATTCTATTATATATT
Found at i:147262675 original size:16 final size:17
Alignment explanation
Indices: 147262635--147262684 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
147262625 TAGAATATTA
147262635 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA-CT
147262655 ATTCTATTATATATA-T
1 ATTCTATTATATATACT
*
147262671 ATTCTAATATATAT
1 ATTCTATTATATAT
147262685 TAGTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
18 2 0.07
20 13 0.45
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTCTATTATATATACT
Found at i:147264438 original size:18 final size:18
Alignment explanation
Indices: 147264417--147264453 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
147264407 AATTCGACGC
* *
147264417 AGTGGATAAATTAGATAA
1 AGTGGAAAAATGAGATAA
147264435 AGTGGAAAAATGAGATAA
1 AGTGGAAAAATGAGATAA
147264453 A
1 A
147264454 CCAGCTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
AGTGGAAAAATGAGATAA
Found at i:147267328 original size:17 final size:17
Alignment explanation
Indices: 147267306--147267339 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
147267296 ATAGATTCGC
*
147267306 TTAGATATACTTAGTAT
1 TTAGATATAATTAGTAT
147267323 TTAGATATAATTAGTAT
1 TTAGATATAATTAGTAT
147267340 AATATACGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGATATAATTAGTAT
Found at i:147276351 original size:24 final size:25
Alignment explanation
Indices: 147276309--147276361 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
147276299 TTTTCTTTCT
147276309 ATATTATTAATATTATTT-ATTTAA
1 ATATTATTAATATTATTTAATTTAA
*
147276333 ATATTATTAATA-TATTTTAATTTAT
1 ATATTATTAATATTA-TTTAATTTAA
147276358 ATAT
1 ATAT
147276362 ATTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 2 0.08
24 15 0.58
25 9 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATATTATTAATATTATTTAATTTAA
Found at i:147276364 original size:24 final size:23
Alignment explanation
Indices: 147276308--147276377 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
147276298 ATTTTCTTTC
147276308 TATAT-TATTAATATTATTTATT
1 TATATATATTAATATTATTTATT
*
147276330 TAAATATTATTAATA-TATTTTAATT
1 TATATA-TATTAATATTA-TTT-ATT
*
147276355 TATATATATTTAA-ATTATATATT
1 TATATATA-TTAATATTATTTATT
147276378 GAAATGATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
22 4 0.10
23 5 0.13
24 16 0.41
25 14 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATATATTAATATTATTTATT
Found at i:147276372 original size:15 final size:14
Alignment explanation
Indices: 147276342--147276377 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
147276332 AATATTATTA
*
147276342 ATATATTTTAATTT
1 ATATATTTTAAATT
147276356 ATATATATTTAAATT
1 ATATAT-TTTAAATT
147276371 ATATATT
1 ATATATT
147276378 GAAATGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATATATTTTAAATT
Found at i:147276589 original size:21 final size:21
Alignment explanation
Indices: 147276549--147276587 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
147276539 AAATCATGGA
147276549 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
147276570 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
147276588 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:147279131 original size:12 final size:12
Alignment explanation
Indices: 147279114--147279138 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
147279104 ATTTTATAAC
147279114 ATAAATATTGTT
1 ATAAATATTGTT
147279126 ATAAATATTGTT
1 ATAAATATTGTT
147279138 A
1 A
147279139 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:147290148 original size:80 final size:80
Alignment explanation
Indices: 147290064--147290212 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
147290054 TATGGTAACC
* * * *
147290064 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
147290128 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
147290144 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
147290209 CCGG
66 CCGG
147290213 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:147290154 original size:40 final size:38
Alignment explanation
Indices: 147290105--147290212 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
147290095 ATCACGATTT
*
147290105 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
147290145 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
147290185 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
147290213 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:147298261 original size:80 final size:80
Alignment explanation
Indices: 147298177--147298325 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
147298167 TATGGTAACC
* * * *
147298177 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
147298241 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
147298257 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
147298322 CCGG
66 CCGG
147298326 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:147298267 original size:40 final size:38
Alignment explanation
Indices: 147298218--147298325 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
147298208 ATCACGATTT
*
147298218 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
147298258 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
147298298 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
147298326 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:147304281 original size:43 final size:42
Alignment explanation
Indices: 147304228--147304394 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
147304218 GATTACGAGA
* * *
147304228 TGTGAGTACATGTAAGACCCTGCCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATT-TAT
* *
147304271 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATCATTA-
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT--TTAT
* * * **
147304314 TATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTTAT
* * * *
147304356 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 -TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATT
147304395 ACACGAGCTT
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 90 0.90
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTTAT
Found at i:147309277 original size:28 final size:29
Alignment explanation
Indices: 147309246--147309317 Score: 128
Period size: 28 Copynumber: 2.5 Consensus size: 29
147309236 GTGACGAGAT
147309246 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
147309274 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
147309303 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
147309318 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 24 0.59
29 17 0.41
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:147309333 original size:29 final size:29
Alignment explanation
Indices: 147309301--147309377 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
147309291 GCTGGAAATA
* *
147309301 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
147309330 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
147309359 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
147309378 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:147309345 original size:58 final size:58
Alignment explanation
Indices: 147309246--147309377 Score: 144
Period size: 58 Copynumber: 2.3 Consensus size: 58
147309236 GTGACGAGAT
* * *
147309246 TGGCACTAAGTGTGC-ATGCTGGAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
** * * * *
147309303 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAA-AATATGGCACTGAGTGTGCAGGCTGAAATCACA
147309361 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
147309378 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
57 25 0.40
58 38 0.60
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGATGCTCGAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:147317077 original size:29 final size:29
Alignment explanation
Indices: 147317044--147317116 Score: 128
Period size: 29 Copynumber: 2.5 Consensus size: 29
147317034 GTGACGAGAT
147317044 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
147317073 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
147317102 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
147317117 GAGCTCGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:147317132 original size:29 final size:29
Alignment explanation
Indices: 147317100--147317176 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
147317090 GCTGGAAATA
* *
147317100 TATGGCACTAAGTGTGCGAGCTCGAAGGG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
** * * *
147317129 TATGGCACTGTGTGTGCGGGCTTAAATCG
1 TATGGCACTAAGTGTGCGAGCTCAAAGCG
*
147317158 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
147317177 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAGCTCAAAGCG
Found at i:147317133 original size:58 final size:59
Alignment explanation
Indices: 147317044--147317176 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
147317034 GTGACGAGAT
* * *
147317044 TGGCACTAAGTGTGC-ATGCTGGAAAAATATGGCACTGAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCT-GAAATCACA
*** * * * *
147317102 TGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
147317160 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
147317177 AATCGAGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (59 bp):
TGGCACTAAGTGTGCGATGCTCGAAAAATATGGCACTGAGTGTGCAGGCTGAAATCACA
Found at i:147321579 original size:42 final size:42
Alignment explanation
Indices: 147321486--147321637 Score: 189
Period size: 43 Copynumber: 3.5 Consensus size: 42
147321476 TAATGCCGAC
* * * *
147321486 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACACGAAATCACATAT-GATGCCAAT
147321529 GTCCCAGACAG-GGTCTTACACGAAATCACATATGATGCCAAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCACATATGATGCCAAT
* * *
147321571 GTCCCAGACATGGTCTTACACGTAAATCACAAATTGATGCCAAC
1 GTCCCAGACGTGGTCTTACACG-AAATCACATA-TGATGCCAAT
*
147321615 GTCCCAGACGTGGACTTACACGA
1 GTCCCAGACGTGGTCTTACACGA
147321638 TAACATATAT
Statistics
Matches: 96, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 30 0.31
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGAAATCACATATGATGCCAAT
Found at i:147327532 original size:24 final size:23
Alignment explanation
Indices: 147327499--147327544 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
147327489 CATGTTTGAC
147327499 TATTACTATT-TACTGCATGCATGT
1 TATTACTATTAT-CTG-ATGCATGT
*
147327523 TATTATTATTATCTGATGCATG
1 TATTACTATTATCTGATGCATG
147327545 GGACTGGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 12 0.60
25 1 0.05
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (23 bp):
TATTACTATTATCTGATGCATGT
Found at i:147335102 original size:40 final size:39
Alignment explanation
Indices: 147335011--147335161 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
147335001 ATAACCATGT
* *
147335011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
147335051 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
147335091 GCACAATTGCCTTCGGGTCTTAACCCAGATAAAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
147335131 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
147335162 TCATTCAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 83 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:147335145 original size:80 final size:80
Alignment explanation
Indices: 147335011--147335160 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
147335001 ATAACCATGT
* * *
147335011 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
147335075 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
147335091 GCACAATTGCCTTCGGGTCTTAACCCAGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
147335154 CCCGGAT
64 CCCGGAT
147335161 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:147336430 original size:19 final size:20
Alignment explanation
Indices: 147336386--147336429 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
147336376 CAAAGAAGAG
147336386 AAAAATAGGTGAAAAAAAAA
1 AAAAATAGGTGAAAAAAAAA
147336406 AAAAATAGGTGAAAAAAAAA
1 AAAAATAGGTGAAAAAAAAA
147336426 AAAA
1 AAAA
147336430 TTTCTTTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (20 bp):
AAAAATAGGTGAAAAAAAAA
Found at i:147345619 original size:40 final size:40
Alignment explanation
Indices: 147345513--147345696 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
147345503 TGCTGGAAAT
* * * * * **
147345513 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
147345553 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
147345593 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
147345631 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
147345672 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
147345697 GTTGAACGAG
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:147360761 original size:28 final size:28
Alignment explanation
Indices: 147360700--147360761 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
147360690 CCTATTCATT
*
147360700 AACAGT-ACAGTCTGGGCCTAAGCCCTA
1 AACAGTAACAGTCTGGGCCTAAGCCCAA
* * *
147360727 TACAGTAACAGTGTGGGCCTATGCCCAA
1 AACAGTAACAGTCTGGGCCTAAGCCCAA
*
147360755 AATAGTA
1 AACAGTA
147360762 TAATCACAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (28 bp):
AACAGTAACAGTCTGGGCCTAAGCCCAA
Found at i:147365159 original size:15 final size:15
Alignment explanation
Indices: 147365139--147365176 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
147365129 TTAAGATTGA
147365139 AATTTTAAATTTTTG
1 AATTTTAAATTTTTG
147365154 AATTTTAAATTTTTG
1 AATTTTAAATTTTTG
147365169 AATTTTAA
1 AATTTTAA
147365177 TTATTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (15 bp):
AATTTTAAATTTTTG
Found at i:147365187 original size:15 final size:15
Alignment explanation
Indices: 147365138--147365187 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
147365128 GTTAAGATTG
147365138 AAATTTTAAATTTTT
1 AAATTTTAAATTTTT
*
147365153 GAATTTTAAATTTTT
1 AAATTTTAAATTTTT
*
147365168 GAATTTT-AATTATTT
1 AAATTTTAAATT-TTT
147365183 AAATT
1 AAATT
147365188 CTAATTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 4 0.12
15 28 0.88
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (15 bp):
AAATTTTAAATTTTT
Found at i:147365387 original size:26 final size:26
Alignment explanation
Indices: 147365351--147365403 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
147365341 CCATTTAACA
147365351 TAAAAATAATATAAGTCCCAAGTATT
1 TAAAAATAATATAAGTCCCAAGTATT
147365377 TAAAAATAATATAAGTCCCAAGTATT
1 TAAAAATAATATAAGTCCCAAGTATT
147365403 T
1 T
147365404 GACCACTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (26 bp):
TAAAAATAATATAAGTCCCAAGTATT
Done.