Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 477 of 770
Found at i:147367629 original size:40 final size:40
Alignment explanation
Indices: 147367585--147367679 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
147367575 ACTACGTTTG
*
147367585 GCACTTAGTGTGCG-TTTCGAGATAGCTTCGACTATATATA
1 GCACTTAGTGTGCGAATTCGA-ATAGCTTCGACTATATATA
* * * * *
147367625 GCACTTAGTGTGTGAATTGGAATAGCTTCGGCTATATGTG
1 GCACTTAGTGTGCGAATTCGAATAGCTTCGACTATATATA
*
147367665 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
147367680 TACTGAGATA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATTCGAATAGCTTCGACTATATATA
Found at i:147368332 original size:56 final size:56
Alignment explanation
Indices: 147368267--147368379 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
147368257 CCATTTGAGT
147368267 TGGCTTGATTTATATGTTGACAAATGATATATGTGATGTTTATAATTTACCATGTG
1 TGGCTTGATTTATATGTTGACAAATGATATATGTGATGTTTATAATTTACCATGTG
147368323 TGGCTTGATTTATATGTTGACAAATGATATATGTGATGTTTATAATTTACCATGTG
1 TGGCTTGATTTATATGTTGACAAATGATATATGTGATGTTTATAATTTACCATGTG
147368379 T
1 T
147368380 TTTGGCATGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.45
Consensus pattern (56 bp):
TGGCTTGATTTATATGTTGACAAATGATATATGTGATGTTTATAATTTACCATGTG
Found at i:147373934 original size:25 final size:26
Alignment explanation
Indices: 147373906--147373956 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
147373896 GTCGTAAATC
147373906 AGAAAAATATC-TCTAGA-AATTTTCT
1 AGAAAAATATCTTC-AGAGAATTTTCT
* *
147373931 AGAATAATCTCTTCAGAGAATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
147373957 CTCTACAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (26 bp):
AGAAAAATATCTTCAGAGAATTTTCT
Found at i:147374141 original size:12 final size:12
Alignment explanation
Indices: 147374116--147374252 Score: 51
Period size: 12 Copynumber: 11.8 Consensus size: 12
147374106 TTTATCAAGA
147374116 TAAATATTAAAT
1 TAAATATTAAAT
147374128 TAAAT-TTAATAT
1 TAAATATTAA-AT
* * *
147374140 TAAGATAATCACT
1 TAA-ATATTAAAT
* *
147374153 TTAGTATTAAAT
1 TAAATATTAAAT
147374165 T-AATA--AAA-
1 TAAATATTAAAT
*
147374173 TACA-ATTAAGA-
1 TAAATATTAA-AT
*
147374184 TAAGTATTAAAT
1 TAAATATTAAAT
*
147374196 TAAAT-TTACTAT
1 TAAATATTA-AAT
*
147374208 TAAACTATTAAAA
1 TAAA-TATTAAAT
**
147374221 T-AATATTATTT
1 TAAATATTAAAT
*
147374232 TAAATATTAGAT
1 TAAATATTAAAT
147374244 TAAAT-TTAA
1 TAAATATTAA
147374253 TAGTAAATCT
Statistics
Matches: 90, Mismatches: 22, Indels: 27
0.65 0.16 0.19
Matches are distributed among these distances:
8 2 0.02
9 4 0.04
10 2 0.02
11 23 0.26
12 46 0.51
13 8 0.09
14 5 0.06
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:147374168 original size:20 final size:18
Alignment explanation
Indices: 147374118--147374169 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
147374108 TATCAAGATA
147374118 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
147374135 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
*
147374155 AGTATTAAATTAATA
1 AATATTAAATTAATA
147374170 AAATACAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:147374358 original size:175 final size:175
Alignment explanation
Indices: 147374067--147374407 Score: 673
Period size: 175 Copynumber: 1.9 Consensus size: 175
147374057 TCACTTTAAT
*
147374067 ATTAAATTTAATAGTAAATCTTATTAAAATAATAGAATGTTTATCAAGATAAATATTAAATTAAA
1 ATTAAATTTAATAGTAAATCTTATTAAAATAATAGAATGTTTATCAAGATAAAGATTAAATTAAA
147374132 TTTAATATTAAGATAATCACTTTAGTATTAAATTAATAAAATACAATTAAGATAAGTATTAAATT
66 TTTAATATTAAGATAATCACTTTAGTATTAAATTAATAAAATACAATTAAGATAAGTATTAAATT
147374197 AAATTTACTATTAAACTATTAAAATAATATTATTTTAAATATTAG
131 AAATTTACTATTAAACTATTAAAATAATATTATTTTAAATATTAG
147374242 ATTAAATTTAATAGTAAATCTTATTAAAATAATAGAATGTTTATCAAGATAAAGATTAAATTAAA
1 ATTAAATTTAATAGTAAATCTTATTAAAATAATAGAATGTTTATCAAGATAAAGATTAAATTAAA
147374307 TTTAATATTAAGATAATCACTTTAGTATTAAATTAATAAAATACAATTAAGATAAGTATTAAATT
66 TTTAATATTAAGATAATCACTTTAGTATTAAATTAATAAAATACAATTAAGATAAGTATTAAATT
147374372 AAATTTACTATTAAACTATTAAAATAATATTATTTT
131 AAATTTACTATTAAACTATTAAAATAATATTATTTT
147374408 TGGAATAATT
Statistics
Matches: 165, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 165 1.00
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.40
Consensus pattern (175 bp):
ATTAAATTTAATAGTAAATCTTATTAAAATAATAGAATGTTTATCAAGATAAAGATTAAATTAAA
TTTAATATTAAGATAATCACTTTAGTATTAAATTAATAAAATACAATTAAGATAAGTATTAAATT
AAATTTACTATTAAACTATTAAAATAATATTATTTTAAATATTAG
Found at i:147379245 original size:40 final size:40
Alignment explanation
Indices: 147379186--147379287 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
147379176 AAATTGAATG
* * * *
147379186 ATATCCGAGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * **
147379226 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
*
147379266 ACATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
147379288 GCATTCGTGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:147379288 original size:40 final size:40
Alignment explanation
Indices: 147379227--147379337 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
147379217 CTGGAAATTA
* * *
147379227 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCA-TAC
*
147379268 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
* * *
147379307 TATCCTGGCTAAGACCCGAAAGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
147379338 ACATGGTTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
39 5 0.08
40 53 0.88
41 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:147387221 original size:40 final size:40
Alignment explanation
Indices: 147387155--147387305 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
147387145 AAATTGAATG
* * *
147387155 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
147387194 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
147387234 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
147387274 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
147387306 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:147387319 original size:40 final size:40
Alignment explanation
Indices: 147387192--147387321 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
147387182 ATGCTGGAAA
* * *
147387192 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
147387232 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
147387272 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
147387312 TTATATCCGG
1 TTATATCCGG
147387322 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:147401400 original size:2 final size:2
Alignment explanation
Indices: 147401393--147401429 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
147401383 TATGTGCAAA
* *
147401393 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
147401430 AAATATACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:147401531 original size:2 final size:2
Alignment explanation
Indices: 147401518--147401656 Score: 78
Period size: 2 Copynumber: 72.0 Consensus size: 2
147401508 GGAATTTAAA
* * *
147401518 AT AT AC AT AT AT AT AT AT AT AT AT AT GT AT AT A- AT AGT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
* * * * **
147401560 A- AG A- AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT GGC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT
* * *
147401599 AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
147401639 AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT
147401657 TAGAAATGAT
Statistics
Matches: 106, Mismatches: 20, Indels: 22
0.72 0.14 0.15
Matches are distributed among these distances:
1 8 0.08
2 95 0.90
3 3 0.03
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (2 bp):
AT
Found at i:147402191 original size:11 final size:12
Alignment explanation
Indices: 147402175--147402211 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
147402165 AGAAAAAAAA
147402175 GGAAGAGAG-AG
1 GGAAGAGAGAAG
147402186 GGAAGAGAGAAG
1 GGAAGAGAGAAG
147402198 GG-AGAGAGAAG
1 GGAAGAGAGAAG
147402209 GGA
1 GGA
147402212 GGGGGAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:147402212 original size:11 final size:11
Alignment explanation
Indices: 147402173--147402222 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
147402163 AAAGAAAAAA
*
147402173 AAGGAAGAGAG
1 AAGGGAGAGAG
147402184 -AGGGAAGAGAG
1 AAGGG-AGAGAG
147402195 AAGGGAGAGAG
1 AAGGGAGAGAG
* *
147402206 AAGGGAGGGGG
1 AAGGGAGAGAG
147402217 AAGGGA
1 AAGGGA
147402223 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:147402520 original size:14 final size:15
Alignment explanation
Indices: 147402485--147402520 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
147402475 TTTTTTGGTT
147402485 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
147402500 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
147402514 TTTTTTT
1 TTTTTTT
147402521 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:147402521 original size:15 final size:16
Alignment explanation
Indices: 147402484--147402521 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
147402474 TTTTTTTGGT
147402484 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
147402500 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
147402514 TTTTTTTT
1 TTTTTTTT
147402522 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:147402535 original size:33 final size:33
Alignment explanation
Indices: 147402483--147402556 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
147402473 TTTTTTTTGG
*
147402483 TTTTTTTT-TGCTGGAAATTTTTTTCTGGAAAT
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
**
147402515 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATTT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAAT
147402548 TTTTTTTTG
1 TTTTTTTTG
147402557 CTTCCCCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 9 0.24
33 22 0.59
34 6 0.16
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAAT
Found at i:147402997 original size:35 final size:34
Alignment explanation
Indices: 147402951--147403020 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 34
147402941 GGGGTGTGTG
147402951 ATGGTGTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGTGGTGGCAGACAGCATGGGAGAGTGGGA
147402985 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTG-TGGTGGCAGACAGCATGGGAGAGTGGGA
147403020 A
1 A
147403021 GAGGCAAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 6 0.17
35 29 0.83
ACGTcount: A:0.24, C:0.10, G:0.49, T:0.17
Consensus pattern (34 bp):
ATGGTGTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:147411975 original size:25 final size:25
Alignment explanation
Indices: 147411941--147412010 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
147411931 CAGGCCTATT
* *
147411941 TTCACAGCTCGTGTGAGCATTCTGA
1 TTCACAGCTCATGTGAGCATTCTAA
147411966 TTCACAGCTCATGTGAGCATTCTAA
1 TTCACAGCTCATGTGAGCATTCTAA
* *
147411991 TTCACAGCTTATGTAAGCAT
1 TTCACAGCTCATGTGAGCAT
147412011 ACATGTACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (25 bp):
TTCACAGCTCATGTGAGCATTCTAA
Found at i:147419491 original size:27 final size:27
Alignment explanation
Indices: 147419440--147419491 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
147419430 AACCATTGCA
** *
147419440 TGTGAGTTAATTTTTAGTTATTTTTAT
1 TGTGAGTTAATTTTTAGCCAGTTTTAT
*
147419467 TGTGAGTTAATTTTTAGCCCGTTTT
1 TGTGAGTTAATTTTTAGCCAGTTTT
147419492 TAGTGATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.19, C:0.06, G:0.17, T:0.58
Consensus pattern (27 bp):
TGTGAGTTAATTTTTAGCCAGTTTTAT
Found at i:147424722 original size:29 final size:30
Alignment explanation
Indices: 147424690--147424749 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
147424680 TAAAGTGATT
*
147424690 TTGAGTAAAAATGTATATT-AGGGATT-AAA
1 TTGAG-AAAAATGTAAATTGAGGGATTGAAA
**
147424719 TTGAGAAATTTGTAAATTGAGGGATTGAAA
1 TTGAGAAAAATGTAAATTGAGGGATTGAAA
147424749 T
1 T
147424750 GTGAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 10 0.38
29 12 0.46
30 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (30 bp):
TTGAGAAAAATGTAAATTGAGGGATTGAAA
Found at i:147425395 original size:47 final size:47
Alignment explanation
Indices: 147425299--147425428 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 47
147425289 GTGTGAATAA
* *
147425299 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGGAGT
* * * * *
147425346 TACCTTGATTTGGCTACGGGCAATGGTATAAGTACTCTGGGA-TACGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGGA-GT
* * **
147425393 TACTTTGATTTGTCTATAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
147425429 AATCGATTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
46 1 0.01
47 68 0.99
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGGAGT
Found at i:147434305 original size:38 final size:39
Alignment explanation
Indices: 147434234--147434395 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
147434224 TGTGAATGAA
147434234 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
147434273 TGTGCGAATTGTGATATCC-GGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
147434311 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
147434350 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
147434390 TGTGCG
1 TGTGCG
147434396 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:147434362 original size:77 final size:79
Alignment explanation
Indices: 147434245--147434395 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
147434235 GTGCGAATTG
147434245 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCC-GGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
147434308 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
147434322 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
147434387 ATTTGTGCG
66 AATTGTGCG
147434396 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 46 0.67
78 6 0.09
79 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:147434411 original size:40 final size:39
Alignment explanation
Indices: 147434234--147434425 Score: 242
Period size: 39 Copynumber: 4.9 Consensus size: 39
147434224 TGTGAATGAA
* *
147434234 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
147434273 TGTGCGAATTGTGATATCC-GGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
147434311 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
147434350 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
147434390 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
147434426 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.26
39 62 0.45
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:147442163 original size:39 final size:39
Alignment explanation
Indices: 147442109--147442269 Score: 259
Period size: 39 Copynumber: 4.1 Consensus size: 39
147442099 TGATGAATGT
147442109 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
147442148 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
** *
147442187 TGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
* * *
147442226 TGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTG
1 TGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTG
147442266 TGCG
1 TGCG
147442270 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
Found at i:147442285 original size:40 final size:39
Alignment explanation
Indices: 147442109--147442299 Score: 247
Period size: 39 Copynumber: 4.8 Consensus size: 39
147442099 TGATGAATGT
* *
147442109 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTG
* *
147442148 TGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTG
*
147442187 TGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTG
1 TGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTG
* * *
147442226 TGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTG
1 TGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAATTG
* ** * *
147442266 TGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
147442300 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAATTG
Found at i:147446726 original size:29 final size:29
Alignment explanation
Indices: 147446692--147446823 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
147446682 TACTCGATTT
** * *
147446692 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
147446721 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
147446750 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
147446779 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
147446808 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
147446824 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:147448530 original size:47 final size:47
Alignment explanation
Indices: 147448461--147448562 Score: 186
Period size: 47 Copynumber: 2.1 Consensus size: 47
147448451 GAGAAGCTAG
147448461 CTTTAAATAGAGCGAACCAGATGAGTTAGGGTGGACTTCGACACGTT
1 CTTTAAATAGAGCGAACCAGATGAGTTAGGGTGGACTTCGACACGTT
*
147448508 CTTTAAATAGAGCGAACCAGATGAGTTAGGGTGGACTTCGACGCGTT
1 CTTTAAATAGAGCGAACCAGATGAGTTAGGGTGGACTTCGACACGTT
147448555 CTTGTAAA
1 CTT-TAAA
147448563 CAAGTATGTA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 49 0.92
48 4 0.08
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (47 bp):
CTTTAAATAGAGCGAACCAGATGAGTTAGGGTGGACTTCGACACGTT
Found at i:147448907 original size:27 final size:27
Alignment explanation
Indices: 147448825--147448907 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 27
147448815 ATATCATATC
* *
147448825 TGTAGGGTAGAATTACTAAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
* * *
147448852 TGTAGGATAGAATTACTGAAATGCTCT
1 TGTAGGGTAGAATTACTGAAATACCCT
147448879 TGTAGGGTAGAATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
147448906 TG
1 TG
147448908 GTTTACAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:147448919 original size:27 final size:27
Alignment explanation
Indices: 147448889--147449203 Score: 213
Period size: 27 Copynumber: 11.7 Consensus size: 27
147448879 TGTAGGGTAG
*
147448889 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTACAA
*
147448916 AATTACTG-AATACCCTTGGA-ATACAA
1 AATTACTGAAATACCCTT-GATTTACAA
** * * * *
147448942 AATTACCAAAATACCATCGACTTATAA
1 AATTACTGAAATACCCTTGATTTACAA
* ** * *
147448969 AATTACCGAAATACCCTCAACTTGCAA
1 AATTACTGAAATACCCTTGATTTACAA
* *
147448996 AATTACTGAAATACCCTTGACTTATAA
1 AATTACTGAAATACCCTTGATTTACAA
* * ** * *
147449023 AATTACCGAAATATCCTCAACTTGCAA
1 AATTACTGAAATACCCTTGATTTACAA
* ** **
147449050 AATTATTGAAATACCCTCAATTTGTAA
1 AATTACTGAAATACCCTTGATTTACAA
** * **
147449077 AATTACCAAAATACCATTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTACAA
* * * *
147449104 AGTTACAGAAATACCCCTAATTTACAA
1 AATTACTGAAATACCCTTGATTTACAA
*
147449131 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTAC-AA
* * * **
147449159 AATTACAGAAATACCATTGGTTTGTAA
1 AATTACTGAAATACCCTTGATTTACAA
147449186 AATTACTGAAATACCCTT
1 AATTACTGAAATACCCTT
147449204 CGTTTGTAGA
Statistics
Matches: 230, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
26 22 0.10
27 185 0.80
28 23 0.10
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTACAA
Found at i:147449052 original size:81 final size:80
Alignment explanation
Indices: 147448913--147449200 Score: 256
Period size: 81 Copynumber: 3.6 Consensus size: 80
147448903 CCTTGGTTTA
* * * * * * *
147448913 CAAAATTACTG-AATACCCTTGGA-ATACAAAATTACCAAAATACCATCGACTTATAAAATTACC
1 CAAAATTACTGAAATACCATT-GATTTATAAAATTACCGAAATACC-TCAACTTACAAAATTACA
147448976 GAAATACCCTCAACTTG
64 GAAATACCCTCAACTTG
* * * **
147448993 CAAAATTACTGAAATACCCTTGACTTATAAAATTACCGAAATATCCTCAACTTGCAAAATTATTG
1 CAAAATTACTGAAATACCATTGATTTATAAAATTACCGAAATA-CCTCAACTTACAAAATTACAG
*
147449058 AAATACCCTCAATTTG
65 AAATACCCTCAACTTG
* ** ** * * * *
147449074 TAAAATTACCAAAATACCATTGATTTGGAAAGTTACAGAAATACCCCTAATTTACAAAATTACAG
1 CAAAATTACTGAAATACCATTGATTTATAAAATTACCGAAATACCTC-AACTTACAAAATTACAG
** *
147449139 AAATACCCTTGACTTT
65 AAATACCCTCAACTTG
* * * *
147449155 CAAAAATTACAGAAATACCATTGGTTTGTAAAATTACTGAAATACC
1 C-AAAATTACTGAAATACCATTGATTTATAAAATTACCGAAATACC
147449201 CTTCGTTTGT
Statistics
Matches: 169, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
80 16 0.09
81 113 0.67
82 40 0.24
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (80 bp):
CAAAATTACTGAAATACCATTGATTTATAAAATTACCGAAATACCTCAACTTACAAAATTACAGA
AATACCCTCAACTTG
Found at i:147457989 original size:29 final size:29
Alignment explanation
Indices: 147457883--147458029 Score: 160
Period size: 28 Copynumber: 5.1 Consensus size: 29
147457873 ACATACATGC
*
147457883 ATATGGCCCACTTA-GCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACATTT
* * *
147457911 ATATGGCCCATCAGCCCCAATTCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* * *
147457940 CATATGGCCCATCAGGGCCAAATCACCTTT
1 -ATATGGCCCATTAGGCCCAAATCACATTT
*
147457970 ATATGGCCCATTAGGCCC-AATCTCATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
147457998 ATATGGCCCATTCA-GCCCAAATCACA-TT
1 ATATGGCCCATT-AGGCCCAAATCACATTT
147458026 ATAT
1 ATAT
147458030 TTATGCTCAC
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
27 2 0.02
28 43 0.43
29 31 0.31
30 25 0.25
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:147458186 original size:19 final size:19
Alignment explanation
Indices: 147458149--147458186 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
147458139 CTATTCACAA
*
147458149 CCAAAGTCCATGGAATCGC
1 CCAAAGTCCATGCAATCGC
*
147458168 CCAAAGTCCATGCACTCGC
1 CCAAAGTCCATGCAATCGC
147458187 AAGACTACCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.37, G:0.18, T:0.16
Consensus pattern (19 bp):
CCAAAGTCCATGCAATCGC
Found at i:147458247 original size:16 final size:16
Alignment explanation
Indices: 147458206--147458248 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
147458196 GTAGCCAAAC
* *
147458206 TTTCGGCTTCTCAACT
1 TTTCGGCTTTTCAACA
*
147458222 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAACA
147458238 TTTCGGCTTTT
1 TTTCGGCTTTT
147458249 GCCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.26, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAACA
Found at i:147469940 original size:27 final size:27
Alignment explanation
Indices: 147469901--147469970 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
147469891 CTCGATTGTG
*
147469901 AAATTACTAAAATACCCCTA-TAGGGTA
1 AAATTACCAAAATACCCCTAGT-GGGTA
* **
147469928 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTGGGTA
147469955 AAATTACCAAAATACC
1 AAATTACCAAAATACC
147469971 ACTGGTTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTGGGTA
Found at i:147470032 original size:27 final size:27
Alignment explanation
Indices: 147469929--147470041 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
147469919 TATAGGGTAG
*
147469929 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTATAA
* * * *
147469956 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTATAA
* * *
147469983 AATTATCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-GATTTATAA
*
147470010 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTATAA
147470037 AATTA
1 AATTA
147470042 TAGAAATACC
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
26 3 0.04
27 62 0.90
28 4 0.06
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTATAA
Found at i:147470040 original size:54 final size:55
Alignment explanation
Indices: 147469953--147470109 Score: 169
Period size: 54 Copynumber: 2.9 Consensus size: 55
147469943 CCCTAGTTTG
***
147469953 TAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACCCTCAATT-TA
1 TAAAATTACCAAAATACCACTGGTTTACAAAATTATCGAAATACCCTCAATTCTA
* * * * *
147470007 TAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTCCTA
1 TAAAATTACCAAAATACCACTGGTTTACAAAATTATCGAAATACCC-TCAATT-CTA
*
147470064 -AAAATTA-TAGAAATACCACTGGTTTACAAAATTA-CTGAAATACCCT
1 TAAAATTACCA-AAATACCACTGGTTTACAAAATTATC-GAAATACCCT
147470110 TGGTTTGTAG
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
54 40 0.47
55 6 0.07
56 38 0.44
57 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (55 bp):
TAAAATTACCAAAATACCACTGGTTTACAAAATTATCGAAATACCCTCAATTCTA
Found at i:147470048 original size:27 final size:27
Alignment explanation
Indices: 147469982--147470108 Score: 109
Period size: 27 Copynumber: 4.6 Consensus size: 27
147469972 CTGGTTTGTG
* * *
147469982 AAATTATCGAAATA-CCCTCAATTTATA
1 AAATTATAGAAATACCCCT-GATTTACA
*
147470009 AAATTACCA-AAATACCCCTGATTTACA
1 AAATTA-TAGAAATACCCCTGATTTACA
*
147470036 AAATTATAGAAATACCCTTGACTTCCTA-A
1 AAATTATAGAAATACCCCTGA-TT--TACA
* *
147470065 AAATTATAGAAATACCACTGGTTTACA
1 AAATTATAGAAATACCCCTGATTTACA
147470092 AAATTACT-GAAATACCC
1 AAATTA-TAGAAATACCC
147470109 TTGGTTTGTA
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
26 3 0.04
27 49 0.60
28 9 0.11
29 19 0.23
30 2 0.02
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.29
Consensus pattern (27 bp):
AAATTATAGAAATACCCCTGATTTACA
Found at i:147471101 original size:24 final size:25
Alignment explanation
Indices: 147471025--147471086 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
147471015 AGGAAGTGCT
* * *
147471025 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
147471050 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
147471075 AAAAGGGCTTTG
1 AAAAGGGCTTTG
147471087 GCCTAGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:147473567 original size:26 final size:27
Alignment explanation
Indices: 147473508--147473571 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
147473498 ACTACCAAAG
* *
147473508 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAGAATCACCGTTT
*
147473535 TACCCTCGATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATCACCGTTT
147473561 TACCCTCGATT
1 TACCCTCGATT
147473572 GTGAAATTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCACCGTTT
Found at i:147473633 original size:27 final size:27
Alignment explanation
Indices: 147473603--147473701 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
147473593 TATAGGGTAG
147473603 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
147473630 AATTACCAAAATATCACTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
147473657 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
147473684 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
147473702 GACTTACAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.05
27 53 0.88
28 4 0.07
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:147473642 original size:54 final size:54
Alignment explanation
Indices: 147473561--147473703 Score: 130
Period size: 54 Copynumber: 2.7 Consensus size: 54
147473551 ATTACCGTTT
* * ** *
147473561 TACCCTCGA-TTGTGAAATTACTGAAATACCCCT-ATAGGGTAGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT-GGGTAAAATTACCAAAA
* * * * ** * *
147473614 TACCC-CTAGTTTGTAAAATTACCAAAATATCACTGGTTTGTAAAATTATCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATGGGTAAAATTACCAAAA
147473668 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGA
147473704 CTTACAAAAT
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
52 1 0.01
53 5 0.07
54 61 0.88
55 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATGGGTAAAATTACCAAAA
Found at i:147473713 original size:54 final size:54
Alignment explanation
Indices: 147473623--147473727 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
147473613 ATACCCCTAG
* ** ** *
147473623 TTTGTAAAATTACCAAAATATCACTGGTTTGTAAAATTATCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGACTTACAAAATTATAGAAATACCCTCAA
*
147473677 TTTGTAAAATTACCAAAATACCCCTGACTTACAAAATTATAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACTGACTTACAAAATTATAGAAATACCCT
147473728 TGGCTTTCTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGACTTACAAAATTATAGAAATACCCTCAA
Found at i:147473722 original size:27 final size:27
Alignment explanation
Indices: 147473692--147473786 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
147473682 AAAATTACCA
* *
147473692 AAATACCCCTGACTTACAAAATTATAG
1 AAATACCCTTGGCTTACAAAATTATAG
*
147473719 AAATACCCTTGGCTTTCTAAAAATTATAG
1 AAATACCCTTGGCTTAC--AAAATTATAG
* *
147473748 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGGCTTACAAAATTA-TAG
147473775 AAATACCCTTGG
1 AAATACCCTTGG
147473787 TTCGTAGATT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
27 33 0.57
28 1 0.02
29 24 0.41
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGGCTTACAAAATTATAG
Found at i:147473723 original size:81 final size:83
Alignment explanation
Indices: 147473603--147473754 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 83
147473593 TATAGGGTAG
* ** * *
147473603 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCAC-TGG-TTTGT-AAAATTATCG
1 AATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATA-CACTTGGCTTTCTAAAAATTATAG
147473665 AAATACCCTCAATTTGTAA
65 AAATACCCTCAATTTGTAA
* *
147473684 AATTACCAAAATACCCCT-GACTTACAAAATTA-TAGAAATACCCTTGGCTTTCTAAAAATTATA
1 AATTACCAAAATACCCCTAG-CTTACAAAATTACCA-AAATACACTTGGCTTTCTAAAAATTATA
147473747 GAAATACC
64 GAAATACC
147473755 ATTGGTTTAC
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
80 4 0.07
81 35 0.59
82 4 0.07
83 16 0.27
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (83 bp):
AATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACACTTGGCTTTCTAAAAATTATAGA
AATACCCTCAATTTGTAA
Found at i:147473881 original size:27 final size:27
Alignment explanation
Indices: 147473830--147473907 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
147473820 AAATGACTAA
* * *
147473830 AATACCCCTAATA-GGTAAAAAGACCTT
1 AATACCCCT-GTAGGGTAAAATGACCGT
* *
147473857 AA-AGCCTCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
*
147473884 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
147473908 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 3 0.08
27 36 0.90
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:147474754 original size:25 final size:25
Alignment explanation
Indices: 147474716--147474776 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
147474706 AGGAAGTGCT
* * *
147474716 AAAAGGGCTATGCCCCAGCTTACCG
1 AAAAGGGCTTTGCCCCAACTTACCA
* *
147474741 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAACTTACCA
147474766 AAAAGGGCTTT
1 AAAAGGGCTTT
147474777 TCCTCAGTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAACTTACCA
Found at i:147475054 original size:31 final size:31
Alignment explanation
Indices: 147475005--147475087 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
147474995 CGCTTACAGT
147475005 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
147475035 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
147475066 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
147475088 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:147478417 original size:26 final size:26
Alignment explanation
Indices: 147478386--147478491 Score: 160
Period size: 26 Copynumber: 4.1 Consensus size: 26
147478376 TGAAATTCCC
147478386 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
147478412 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
147478438 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
147478464 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
147478490 AT
1 AT
147478492 AAATTTGTAT
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 3 0.04
26 70 0.93
27 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:147483851 original size:40 final size:40
Alignment explanation
Indices: 147483751--147483928 Score: 144
Period size: 40 Copynumber: 4.5 Consensus size: 40
147483741 AAATTATAAT
* * * * **
147483751 CGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
147483791 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* * *
147483831 CGGGCTAAGACCCGAAGGCATTTGTGC-AATC-GTGATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT-ATATC
* * * * * * * *
147483870 CGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTACCATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
* *
147483910 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAGACCCGAAGGC
147483929 GTTTGAACGA
Statistics
Matches: 110, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.26
40 80 0.73
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATC
Found at i:147491889 original size:40 final size:38
Alignment explanation
Indices: 147491840--147491983 Score: 137
Period size: 40 Copynumber: 3.7 Consensus size: 38
147491830 TGCTGGAAAT
* * *
147491840 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTCG
*
147491879 CTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTC-G
* * *
147491920 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
* * *
147491958 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
147491984 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.30
40 58 0.67
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
Found at i:147492009 original size:79 final size:80
Alignment explanation
Indices: 147491845--147492028 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 80
147491835 GAAATTATAA
* * * *
147491845 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
147491910 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * *
147491925 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
147491988 GTGCGGGTTA-CCATAT
65 GTGCGAGTCATCC-TAT
* * *
147492004 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
147492029 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.68
80 26 0.30
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:147496978 original size:54 final size:58
Alignment explanation
Indices: 147496909--147497037 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 58
147496899 AATTTAAGCC
** * * *
147496909 CGCACACACAGTGCCATACCCTTCGAGCTCGCACAC-CAGTG-CAT-TATTTCCAGC-
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACTCAGTGCCATATATTTCCAGCA
* * * *
147496963 TGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACTCAGTGCCATATATTTCCAGCA
147497021 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
147497038 CTCGTCACCG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
54 28 0.46
55 4 0.07
56 3 0.05
57 10 0.16
58 16 0.26
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACTCAGTGCCATATATTTCCAGCA
Found at i:147497002 original size:29 final size:29
Alignment explanation
Indices: 147496881--147497037 Score: 155
Period size: 29 Copynumber: 5.6 Consensus size: 29
147496871 TACTCGATTT
* * *
147496881 CGCACACTTAGTGCCACGA-ATTT-AAGCC
1 CGCACACTTAGTGCCA-TATATTTCCAGCA
** *** * *
147496909 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
147496938 CGCACAC-CAGTG-CAT-TATTTCCAGC-
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
147496963 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
147496992 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
147497021 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
147497038 CTCGTCACCG
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
25 6 0.06
26 10 0.09
27 7 0.06
28 31 0.28
29 55 0.50
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:147504905 original size:28 final size:29
Alignment explanation
Indices: 147504771--147504930 Score: 198
Period size: 29 Copynumber: 5.6 Consensus size: 29
147504761 TACTCGATTT
** * *
147504771 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
147504800 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
147504829 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
147504858 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
147504887 CGCACA-TTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
147504915 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
147504931 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
28 30 0.26
29 84 0.74
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:147508668 original size:28 final size:28
Alignment explanation
Indices: 147508630--147508726 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
147508620 AAGATTCCAA
* * *
147508630 AAAAAATATCTTGAGAGGGAAGTTCACC
1 AAAAACTATCTTAAGAGGGAAGTCCACC
*
147508658 AAAAACTATCTTAAGCA-AGAAGTCCACC
1 AAAAACTATCTTAAG-AGGGAAGTCCACC
*
147508686 AAAAACTATCTTAAGTGGGAAGTCCACC
1 AAAAACTATCTTAAGAGGGAAGTCCACC
**
147508714 AAGGACTATCTTA
1 AAAAACTATCTTA
147508727 CGTAGGGAGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
28 58 0.98
29 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (28 bp):
AAAAACTATCTTAAGAGGGAAGTCCACC
Found at i:147508737 original size:28 final size:27
Alignment explanation
Indices: 147508678--147508809 Score: 88
Period size: 28 Copynumber: 4.7 Consensus size: 27
147508668 TTAAGCAAGA
** *
147508678 AGTCCACCAAAAACTATCTTAAGTGGG
1 AGTCCACCAAGGACTATCTTACGTGGG
147508705 AAGTCCACCAAGGACTATCTTACGTAGGG
1 -AGTCCACCAAGGACTATCTTACGT-GGG
** * *
147508734 AGTCTGCCAAGGATTGTCTTACACG-GGG
1 AGTCCACCAAGGACTATCTT--ACGTGGG
** * *
147508762 AGTCTGCCAAGGACTATCTTATGTGGA
1 AGTCCACCAAGGACTATCTTACGTGGG
*
147508789 ATGTCCGCCATAGG-CTATCTT
1 A-GTCCACCA-AGGACTATCTT
147508810 GAAGACAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.02
27 3 0.03
28 72 0.84
29 6 0.07
30 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (27 bp):
AGTCCACCAAGGACTATCTTACGTGGG
Found at i:147511587 original size:24 final size:24
Alignment explanation
Indices: 147511482--147511586 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
147511472 CTGGAGGCCT
*
147511482 AGCCTCTTATAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCAAA
147511507 AGCCCTTTTAATAACTGGGGCAAA
1 AGCCCTTTTAATAACTGGGGCAAA
*
147511531 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
*
147511555 AGCCCTTTTAATAA-TGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
147511578 AGCCCTTTT
1 AGCCCTTTT
147511587 TGCACTTCCT
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
23 18 0.23
24 56 0.72
25 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:147511663 original size:20 final size:20
Alignment explanation
Indices: 147511638--147511676 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
147511628 TATGAATACA
147511638 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
147511658 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
147511677 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:147511682 original size:20 final size:20
Alignment explanation
Indices: 147511639--147511683 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
147511629 ATGAATACAT
**
147511639 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
147511659 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
147511679 CATGT
1 CATGT
147511684 TTATCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:147511766 original size:25 final size:25
Alignment explanation
Indices: 147511720--147511767 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
147511710 ATATATAAAC
* * * *
147511720 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
147511745 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
147511768 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:147519346 original size:24 final size:24
Alignment explanation
Indices: 147519309--147519414 Score: 194
Period size: 24 Copynumber: 4.4 Consensus size: 24
147519299 CTGCAGGCCT
*
147519309 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
147519334 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
147519358 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
147519382 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
147519406 AGCCCTTTT
1 AGCCCTTTT
147519415 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
24 76 0.95
25 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:147519489 original size:20 final size:20
Alignment explanation
Indices: 147519464--147519530 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
147519454 TTATGAATAC
147519464 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
147519484 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
147519504 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
147519524 ACCATGT
1 ATCATGT
147519531 TTATCAGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:147519495 original size:11 final size:11
Alignment explanation
Indices: 147519464--147519519 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
147519454 TTATGAATAC
147519464 ATCATGTGCAT
1 ATCATGTGCAT
*
147519475 ATCA--TACAT
1 ATCATGTGCAT
147519484 ATCATGTGCAT
1 ATCATGTGCAT
*
147519495 ATCA--TACAT
1 ATCATGTGCAT
*
147519504 GTCATGTGCAT
1 ATCATGTGCAT
147519515 ATCAT
1 ATCAT
147519520 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:147524908 original size:37 final size:37
Alignment explanation
Indices: 147524865--147525044 Score: 297
Period size: 37 Copynumber: 4.9 Consensus size: 37
147524855 GCTCGGACGT
* *
147524865 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
147524902 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
147524939 AATCTCCACACGTAGTCATCAGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
147524976 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
147525013 AATCTCCACACGTAGTCATCGGGTCTCACCCG
1 AATCTCCACACGTAGTCATCGGGTCTTACCCG
147525045 AAATATATTT
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:147525261 original size:47 final size:47
Alignment explanation
Indices: 147525209--147525629 Score: 662
Period size: 47 Copynumber: 9.0 Consensus size: 47
147525199 TTTCACACTA
* * ** * *
147525209 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
147525256 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
147525303 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
147525350 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
147525397 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
147525444 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
147525491 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
147525538 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
147525585 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
147525630 AAAATCCTAA
Statistics
Matches: 344, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 344 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:147525436 original size:25 final size:25
Alignment explanation
Indices: 147525408--147525536 Score: 80
Period size: 25 Copynumber: 5.4 Consensus size: 25
147525398 CCATTCGGCC
147525408 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
* * *
147525433 TCATCAC--ATAGGCCA--TTCGGCCT
1 TCATCACATATATG-CATGTTC-ACAT
*
147525456 T-ATCACATATATGCATGCTCACAT
1 TCATCACATATATGCATGTTCACAT
* * * *
147525480 TTATCACAT-T-GGCCA--TTCGGC-C
1 TCATCACATATATG-CATGTTC-ACAT
147525502 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
147525527 TCATCACATA
1 TCATCACATA
147525537 GGCCATTCGG
Statistics
Matches: 75, Mismatches: 15, Indels: 28
0.64 0.13 0.24
Matches are distributed among these distances:
22 18 0.24
23 14 0.19
24 14 0.19
25 29 0.39
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (25 bp):
TCATCACATATATGCATGTTCACAT
Found at i:147532376 original size:42 final size:42
Alignment explanation
Indices: 147532258--147532420 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
147532248 CACACTACCA
* * * *
147532258 ATGCCATATCCCAGATATGGTATTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTAGATGAAATCTCATATCG
* * *
147532300 ATGCCAATAGCCTAGTTATGGTCTTACG-TGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTA-GATGAAATCTCATATCG
* * * *
147532343 ATGCCATATCTCAGATATGGCCTTAGACGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTAGATGAAATCTCATATCG
** * *
147532385 ATG-CATATCCCAGATATTATCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTAGATGAAATCTCA
147532421 AAAACCCTAA
Statistics
Matches: 97, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
41 27 0.28
42 36 0.37
43 34 0.35
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTAGATGAAATCTCATATCG
Found at i:147538358 original size:40 final size:39
Alignment explanation
Indices: 147538272--147538455 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
147538262 AAATTGAATG
* * * * *
147538272 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
147538312 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
147538352 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
147538392 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
147538431 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
147538456 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:147551905 original size:40 final size:40
Alignment explanation
Indices: 147551860--147552026 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
147551850 CGGAATATAA
147551860 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
147551900 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
147551940 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
147551980 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
147552019 CCGGATAT
1 CCGGATAT
147552027 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:147552010 original size:80 final size:79
Alignment explanation
Indices: 147551860--147552026 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
147551850 CGGAATATAA
* *
147551860 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
147551925 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
147551940 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
147552002 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
147552019 CCGGATAT
1 CCGGATAT
147552027 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:147552875 original size:17 final size:19
Alignment explanation
Indices: 147552852--147552897 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
147552842 AAGAAGCATG
147552852 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
147552870 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
147552888 AATCATGCTC
1 AATCATGCTC
147552898 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:147558865 original size:40 final size:40
Alignment explanation
Indices: 147558784--147558967 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
147558774 CGAATGATGT
* * * *
147558784 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
**
147558824 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
147558864 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
147558904 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* * *
147558944 CGAGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
147558968 AAAGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:147558985 original size:80 final size:80
Alignment explanation
Indices: 147558787--147558990 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
147558777 ATGATGTCGG
* ** * **
147558787 GCTAAGTCCCGAAGGCTTTGTGCTA-AGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATT-TGAAAGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTTGTGC
*
147558851 GAGTTACTAAATCCGG
65 GAGTTACTAAATCCGA
* *** *
147558867 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATTTGAAAGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGC
147558931 GAGTTACTATAA-CCGA
65 GAGTTACTA-AATCCGA
*
147558947 GCTATGTCCCGAAGGCATTTGAAAGAG-TAGCTATATCC-GGTTAA
1 GCTAAGTCCCGAAGGCATTTGAAAGAGTTA-CTATATCCGGGTTAA
147558991 ACTCTGAAGG
Statistics
Matches: 104, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 11 0.11
80 91 0.88
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
GCTAAGTCCCGAAGGCATTTGAAAGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCG
AGTTACTAAATCCGA
Found at i:147567883 original size:22 final size:22
Alignment explanation
Indices: 147567854--147567904 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
147567844 TGAAAATTAA
*
147567854 AAAAAAAAACAAAAAAACAAAAG
1 AAAAAAAAA-AAAAAGACAAAAG
*
147567877 AAAAAAAAAAAAAAGAGAAAAG
1 AAAAAAAAAAAAAAGACAAAAG
147567899 AAAAAA
1 AAAAAA
147567905 GAGAGAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAGACAAAAG
Found at i:147567884 original size:17 final size:17
Alignment explanation
Indices: 147567852--147567904 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
147567842 TTTGAAAATT
147567852 AAAAAAA-AAAACAAAA
1 AAAAAAAGAAAACAAAA
147567868 AAACAAAAGAAAA-AAAA
1 AAA-AAAAGAAAACAAAA
*
147567885 AAAAAAGAGAAAAGAAAA
1 AAAAAA-AGAAAACAAAA
147567903 AA
1 AA
147567905 GAGAGAAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.18
17 17 0.52
18 10 0.30
ACGTcount: A:0.89, C:0.04, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAACAAAA
Found at i:147567891 original size:15 final size:15
Alignment explanation
Indices: 147567852--147567904 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
147567842 TTTGAAAATT
*
147567852 AAAAAAAAAA-ACAA
1 AAAAAAAAAAGAAAA
*
147567866 AAAAACAAAAGAAAA
1 AAAAAAAAAAGAAAA
147567881 AAAAAAAAAAGAGAAA
1 AAAAAAAAAAGA-AAA
147567897 AGAAAAAA
1 A-AAAAAA
147567905 GAGAGAAGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.27
15 14 0.42
16 4 0.12
17 6 0.18
ACGTcount: A:0.89, C:0.04, G:0.08, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:147567905 original size:7 final size:7
Alignment explanation
Indices: 147567852--147567929 Score: 52
Period size: 7 Copynumber: 10.7 Consensus size: 7
147567842 TTTGAAAATT
147567852 AAAAA-A
1 AAAAAGA
*
147567858 AAAAACA
1 AAAAAGA
147567865 AAAAA-A
1 AAAAAGA
*
147567871 CAAAAGAA
1 AAAAAG-A
*
147567879 AAAAAAA
1 AAAAAGA
147567886 AAAAAGA
1 AAAAAGA
*
147567893 GAAAAGA
1 AAAAAGA
147567900 AAAAAGA
1 AAAAAGA
*
147567907 GAGAAGAGGA
1 -A-AA-AAGA
147567917 AAAAAGA
1 AAAAAGA
147567924 GAAAAA
1 -AAAAA
147567930 TGGAGAGGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
6 10 0.18
7 28 0.49
8 13 0.23
9 3 0.05
10 3 0.05
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:147567918 original size:17 final size:16
Alignment explanation
Indices: 147567878--147567929 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
147567868 AAACAAAAGA
* *
147567878 AAAAAAAAAAAAAGAG
1 AAAAGAAAAAAGAGAG
147567894 AAAAGAAAAAAGAGAG
1 AAAAGAAAAAAGAGAG
*
147567910 AAGAGGAAAAAAGAGA-
1 AA-AAGAAAAAAGAGAG
147567926 AAAA
1 AAAA
147567930 TGGAGAGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 1 0.03
16 18 0.58
17 12 0.39
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAGAG
Found at i:147567921 original size:1 final size:1
Alignment explanation
Indices: 147567852--147567904 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
147567842 TTTGAAAATT
* * * * * *
147567852 AAAAAAAAAAACAAAAAAACAAAAGAAAAAAAAAAAAAAGAGAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
147567905 GAGAGAAGAG
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.89, C:0.04, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:147568525 original size:47 final size:48
Alignment explanation
Indices: 147568456--147568550 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 48
147568446 GGAATTTCTT
147568456 TCTTCCAGTCCAAAAGGAAAATGGAC-AAACCAACGATTCAATTCTAA
1 TCTTCCAGTCCAAAAGGAAAATGGACAAAACCAACGATTCAATTCTAA
147568503 TCTTCCAGTCCAAAAGGAAAATGGACAAAACCAACGATTCAATTCTAA
1 TCTTCCAGTCCAAAAGGAAAATGGACAAAACCAACGATTCAATTCTAA
147568551 AGAAAGATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 26 0.55
48 21 0.45
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (48 bp):
TCTTCCAGTCCAAAAGGAAAATGGACAAAACCAACGATTCAATTCTAA
Found at i:147569196 original size:205 final size:206
Alignment explanation
Indices: 147568844--147569394 Score: 802
Period size: 206 Copynumber: 2.7 Consensus size: 206
147568834 GCAGATCTGG
* *
147568844 CTGAAGCAAGATCCAAGATGGTTTGACATCCTTGTGCTTACAATGAACAAATCGAAGA-ATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
147568908 GATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATAATTTGGCATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* **
147568973 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC-GAGAGCAGATACATAGCAGATCTGGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
* *
147569037 CAGATGTTTATA
195 CAGATGATTAGA
* * *
147569049 CTGAAGCAGATACAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
* * * *
147569113 GATTTAGCTTTCACGTGCTTATGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
147569178 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGTAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
*
147569243 TAGATGATTAGA
195 CAGATGATTAGA
* * *
147569255 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * *
147569320 ATTTGGTTTTCGCGTGCTTACGGTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTATCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
147569385 GAATAAATCG
131 GAACAAATCG
147569395 TAGAAGTAGA
Statistics
Matches: 307, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
203 1 0.00
204 43 0.14
205 106 0.35
206 156 0.51
207 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:147571300 original size:16 final size:16
Alignment explanation
Indices: 147571281--147571323 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
147571271 TTTATTTTCC
147571281 TATATATTCTTTTATA
1 TATATATTCTTTTATA
* *
147571297 TATAT-TT-TATTATG
1 TATATATTCTTTTATA
147571311 TATATATTCTTTT
1 TATATATTCTTTT
147571324 TTTACTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 10 0.45
15 4 0.18
16 8 0.36
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (16 bp):
TATATATTCTTTTATA
Found at i:147575026 original size:43 final size:42
Alignment explanation
Indices: 147574869--147575031 Score: 118
Period size: 43 Copynumber: 3.8 Consensus size: 42
147574859 CAATGACAAC
* * *
147574869 GTCCCAGACGTGGTCTTACATGTAATCACATGTCGATGCCACT
1 GTCCCAGACGTGGTCTTACATG-AAACACATATCGATGCCAAT
* * * * *
147574912 ATCCCAAACAG-GGTTTTACACGAATCACA-ATTACGATG-CAGAT
1 GTCCCAGAC-GTGGTCTTACATGAAACACATA-T-CGATGCCA-AT
* ** *
147574955 TTCCCAGAAATGGTCTTAC-TCAAAAACACATATCGATGCCAAT
1 GTCCCAGACGTGGTCTTACAT--GAAACACATATCGATGCCAAT
147574998 GTCCCAGACGTGGTCTTACATGAGAACACATATC
1 GTCCCAGACGTGGTCTTACATGA-AACACATATC
147575032 AGAAAATCCT
Statistics
Matches: 91, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
42 11 0.12
43 68 0.75
44 11 0.12
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACATGAAACACATATCGATGCCAAT
Found at i:147578157 original size:40 final size:41
Alignment explanation
Indices: 147578113--147578204 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 41
147578103 CTTACGTAAC
* * *
147578113 AAACGCCGCAAATA-ATCAAGCATTAGCTGCATTTGTTTAA
1 AAACGCCGCAAATATATCAAGCATTAGCGGCAGTTGTCTAA
* * * * *
147578153 AAACGCCAC-CATATGTGAAGCATTAGCGGCGGTTGTCTAA
1 AAACGCCGCAAATATATCAAGCATTAGCGGCAGTTGTCTAA
147578193 AAACGCCGCAAA
1 AAACGCCGCAAA
147578205 AGTGTTGAGC
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
39 3 0.08
40 36 0.90
41 1 0.03
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (41 bp):
AAACGCCGCAAATATATCAAGCATTAGCGGCAGTTGTCTAA
Found at i:147578414 original size:22 final size:22
Alignment explanation
Indices: 147578372--147578414 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
147578362 AATTTATGTT
*
147578372 ATTTTAAGGTTTAAGGTTATGA
1 ATTTTAAGGTTTAACGTTATGA
*
147578394 ATTTT-AGGTTTCACGTCTATG
1 ATTTTAAGGTTTAACGT-TATG
147578415 GTTAATTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.47
Consensus pattern (22 bp):
ATTTTAAGGTTTAACGTTATGA
Found at i:147579041 original size:14 final size:14
Alignment explanation
Indices: 147579022--147579055 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
147579012 TTGTGCTTGT
*
147579022 GGTTTATGGTTTAG
1 GGTTTATGGATTAG
147579036 GGTTTATGGATTAG
1 GGTTTATGGATTAG
147579050 GGTTTA
1 GGTTTA
147579056 GAGTCTCAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (14 bp):
GGTTTATGGATTAG
Found at i:147579067 original size:14 final size:14
Alignment explanation
Indices: 147579050--147579087 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
147579040 TATGGATTAG
147579050 GGTTTAGAGTCTCA
1 GGTTTAGAGTCTCA
* *
147579064 GGTTTAGGGTTTCA
1 GGTTTAGAGTCTCA
147579078 GGTTTAGAGT
1 GGTTTAGAGT
147579088 ATAATTTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.18, C:0.08, G:0.34, T:0.39
Consensus pattern (14 bp):
GGTTTAGAGTCTCA
Found at i:147579130 original size:15 final size:15
Alignment explanation
Indices: 147579110--147579141 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
147579100 TGTAATTTAG
147579110 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
147579125 AAGATAAATATATAT
1 AAGATAAATATAAAT
147579140 AA
1 AA
147579142 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:147581852 original size:23 final size:23
Alignment explanation
Indices: 147581825--147581876 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
147581815 TACAAATTAG
*
147581825 TTGTGAACAAGGTAGTATATAAT
1 TTGTGAACAAGGTAATATATAAT
*
147581848 TTGTGAACAAGGTAATATATAGT
1 TTGTGAACAAGGTAATATATAAT
147581871 TT-TGAA
1 TTGTGAA
147581877 ATGAAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (23 bp):
TTGTGAACAAGGTAATATATAAT
Found at i:147582433 original size:104 final size:99
Alignment explanation
Indices: 147582198--147582663 Score: 545
Period size: 104 Copynumber: 4.4 Consensus size: 99
147582188 ATTTTAAATA
*
147582198 TTTTATTTTATTTTTAATTTACCTAATTAAATTATATTATATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTT-A-TTA--TAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
* * *
147582263 TATTTGATTTTAATTTAATCACGAAAAATATTGTCTAC
62 TATTTGATTTTATTTTTATCACAAAAAATATTGTCTAC
* *
147582301 TTTGATTTTATTTTTAAATTATCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTTAAATATT
1 TTTTATTTTATTTTT--ATTA--TAATTAAATTAAATTATATTTAAAGTTTTA-TTTTAAATATT
* * *
147582366 TAATTTGATTTTAATTTAATTTAATCACGAAAAATATTTTGTTTAC
61 TTATTTGATTTT-A-TT--TTT-ATCAC-AAAAA-ATATTGTCTAC
147582412 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTA-TTTTT--ATTA--TAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATT
*
147582477 TTATTTTATTTTATTTTTATCACAAAAAATATTGTCTAC
61 TTATTTGATTTTATTTTTATCACAAAAAATATTGTCTAC
*
147582516 TTTTATTTTATTTTTTAAATTACATAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTA-TTTTT--ATT--ATAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATT
*
147582581 TTATTTTATTTTATTTTTATCACAAAAAATATTGTCTAC
61 TTATTTGATTTTATTTTTATCACAAAAAATATTGTCTAC
*
147582620 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
1 TTTTATTTTATTTTT--ATTA--TAATTAAATTAAATTATATTT
147582664 TTAAATACTG
Statistics
Matches: 331, Mismatches: 18, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
101 1 0.00
103 77 0.23
104 143 0.43
105 6 0.02
106 7 0.02
107 3 0.01
108 2 0.01
109 7 0.02
110 5 0.02
111 39 0.12
112 41 0.12
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (99 bp):
TTTTATTTTATTTTTATTATAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATT
TGATTTTATTTTTATCACAAAAAATATTGTCTAC
Found at i:147582956 original size:18 final size:18
Alignment explanation
Indices: 147582930--147583036 Score: 83
Period size: 18 Copynumber: 5.8 Consensus size: 18
147582920 AAATATATAT
*
147582930 CATATCTTACATAATTTA
1 CATAACTTACATAATTTA
147582948 CATAACTTACATAA--TA
1 CATAACTTACATAATTTA
* * *
147582964 CATAAATATATATCATATCGTA
1 CATAACT-TACAT-A-AT-TTA
* * *
147582986 CATAATTTATATAATTCA
1 CATAACTTACATAATTTA
*
147583004 GATAACTTACATAATTTA
1 CATAACTTACATAATTTA
*
147583022 TATAACTTACATAAT
1 CATAACTTACATAAT
147583037 ACATAAATAT
Statistics
Matches: 72, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
16 8 0.11
17 4 0.06
18 43 0.60
19 3 0.04
20 1 0.01
21 5 0.07
22 8 0.11
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
CATAACTTACATAATTTA
Found at i:147582961 original size:9 final size:9
Alignment explanation
Indices: 147582930--147583073 Score: 66
Period size: 9 Copynumber: 16.0 Consensus size: 9
147582920 AAATATATAT
*
147582930 CATATCTTA
1 CATAACTTA
*
147582939 CATAATTTA
1 CATAACTTA
147582948 CATAACTTA
1 CATAACTTA
147582957 CATAA--TA
1 CATAACTTA
*
147582964 CATAAATATATA
1 CAT-AA-CT-TA
* *
147582976 TCATATCGTA
1 -CATAACTTA
*
147582986 CATAATTTA
1 CATAACTTA
*
147582995 TATAA-TTCA
1 CATAACTT-A
*
147583004 GATAACTTA
1 CATAACTTA
*
147583013 CATAATTTA
1 CATAACTTA
*
147583022 TATAACTTA
1 CATAACTTA
147583031 CATAA--TA
1 CATAACTTA
*
147583038 CATAA-ATA
1 CATAACTTA
* * *
147583046 TATATCATA
1 CATAACTTA
147583055 TCATAACTTA
1 -CATAACTTA
147583065 CATAACTTA
1 CATAACTTA
147583074 ATTATACTTA
Statistics
Matches: 103, Mismatches: 21, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
7 12 0.12
8 9 0.09
9 66 0.64
10 10 0.10
12 3 0.03
13 3 0.03
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:147584805 original size:12 final size:12
Alignment explanation
Indices: 147584788--147584813 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
147584778 GAAGATCGAG
147584788 GATGAATCTGAT
1 GATGAATCTGAT
147584800 GATGAATCTGAT
1 GATGAATCTGAT
147584812 GA
1 GA
147584814 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:147588361 original size:39 final size:39
Alignment explanation
Indices: 147588222--147588403 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
147588212 TCGTTCAAAC
* * ** * **
147588222 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
147588262 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
147588302 GCCTT-GGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
147588340 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
147588379 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
147588404 CTCGAACATT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 30 0.24
39 60 0.48
40 34 0.27
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:147596226 original size:39 final size:39
Alignment explanation
Indices: 147596108--147596290 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
147596098 TCGTTCAAAC
* * ** * **
147596108 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
147596148 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
147596188 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
147596227 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
147596266 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
147596291 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:147601678 original size:37 final size:38
Alignment explanation
Indices: 147601615--147601757 Score: 143
Period size: 39 Copynumber: 3.7 Consensus size: 38
147601605 TCGAATGATG
* *
147601615 TCCGGGCTAAG-TCCCGAAGGCTTTGTGCTAAGTACT-AA
1 TCCGGACTAAGAT-CCGAAGGCATTGTGC-AAGTACTAAA
* *
147601653 TCCGGACTAAGAT-CGAAGGCATTGTGCGAGTTCTAAA
1 TCCGGACTAAGATCCGAAGGCATTGTGCAAGTACTAAA
*
147601690 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCA-TTGTGCAAG-TACTAAA
*
147601730 TCCGG-GTAAG-TCCCGAAGGCATTTGTGC
1 TCCGGACTAAGAT-CCGAAGGCA-TTGTGC
147601758 GAGCTATAAC
Statistics
Matches: 93, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
36 5 0.05
37 28 0.30
38 19 0.20
39 30 0.32
40 11 0.12
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TCCGGACTAAGATCCGAAGGCATTGTGCAAGTACTAAA
Found at i:147601746 original size:39 final size:38
Alignment explanation
Indices: 147601615--147601791 Score: 156
Period size: 37 Copynumber: 4.7 Consensus size: 38
147601605 TCGAATGATG
*
147601615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TACTAA
1 TCCGGG-TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
147601653 TCCGGACTAAGAT--CGAAGGCA-TTGTGCGAGTT-CTAAA
1 TCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-AA
*
147601690 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGG-GTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-AA
*
147601730 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGCTA-TAA
1 TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
147601767 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGG-TAAGTCCCGAAGGCATTTG
147601792 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 6, Indels: 21
0.82 0.04 0.14
Matches are distributed among these distances:
36 9 0.07
37 48 0.39
38 19 0.15
39 37 0.30
40 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:147601783 original size:76 final size:75
Alignment explanation
Indices: 147601615--147601791 Score: 188
Period size: 76 Copynumber: 2.3 Consensus size: 75
147601605 TCGAATGATG
147601615 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTACTAATCCGGACTAAGATCGAAGGCATTGTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTACTAATCCGGACTAAGATCGAAGGCATTGTG
147601679 CGAGTTCTAAA
66 CGAG-TCTAAA
* * *
147601690 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAG-TACT-AATCCGGACTAAGAT--CGAAGGCA
147601751 TTTGTGCGAG-CTATAA
61 -TTGTGCGAGTCTA-AA
* *
147601767 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
147601792 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 17
0.79 0.05 0.15
Matches are distributed among these distances:
75 22 0.25
76 39 0.45
77 17 0.20
78 9 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (75 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTACTAATCCGGACTAAGATCGAAGGCATTGTG
CGAGTCTAAA
Found at i:147609728 original size:39 final size:40
Alignment explanation
Indices: 147609644--147609828 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
147609634 TCGAATGATG
* *
147609644 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
147609684 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
147609723 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
147609763 TTCGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
147609804 -CCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
147609829 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
39 36 0.28
40 86 0.66
41 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:147609780 original size:79 final size:80
Alignment explanation
Indices: 147609644--147609822 Score: 217
Period size: 79 Copynumber: 2.2 Consensus size: 80
147609634 TCGAATGATG
*
147609644 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCA-TT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
*
147609708 GTGCGAGTTACTAAA
66 GTGCGAGCTACTAAA
* *
147609723 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGA-TAAG-TCCCGAAGGC
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAA-TCCGGACTAAGAT-CCGAAGGC
147609784 ATTTGTGCGAGCTACTATAA
62 ATTTGTGCGAGCTACTA-AA
* *
147609804 -CCGGGCTATGTCCCGAAGG
1 TCCGGACTAAGTCCCGAAGG
147609823 AATTTGAACG
Statistics
Matches: 87, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 1 0.01
79 42 0.48
80 42 0.48
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAA
Found at i:147614993 original size:37 final size:36
Alignment explanation
Indices: 147614940--147615029 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
147614930 TATAAAAGAA
147614940 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
147614977 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
147615013 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
147615030 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:147615180 original size:49 final size:49
Alignment explanation
Indices: 147615125--147615339 Score: 376
Period size: 49 Copynumber: 4.4 Consensus size: 49
147615115 TTTTACATTA
147615125 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
147615174 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
147615223 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
147615272 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
147615321 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
147615340 CATATATGTA
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 160 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:147628181 original size:43 final size:43
Alignment explanation
Indices: 147628106--147628207 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 43
147628096 TATCGAGATG
* * * *
147628106 TGATTACATGTAAGACCATGTTTAGGAAATTGGCATTG-TATTA
1 TGATTACGTGTAAGACAATGTCTAGGAAATTGGCATCGTTA-TA
*
147628149 TGATTACGTGTAAGACAATGTCT-GGCACATTGGCATCGTTATA
1 TGATTACGTGTAAGACAATGTCTAGG-AAATTGGCATCGTTATA
**
147628192 TGATTTTGTGTAAGAC
1 TGATTACGTGTAAGAC
147628208 CCTATCTGAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 2 0.04
43 46 0.92
44 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (43 bp):
TGATTACGTGTAAGACAATGTCTAGGAAATTGGCATCGTTATA
Found at i:147633932 original size:14 final size:14
Alignment explanation
Indices: 147633892--147633923 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
147633882 TGCAAGGTAT
147633892 AATATAT-G-GTAA
1 AATATATAGTGTAA
147633904 AATATATAGTGTAA
1 AATATATAGTGTAA
147633918 AATATA
1 AATATA
147633924 ATTTGTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (14 bp):
AATATATAGTGTAA
Found at i:147634065 original size:11 final size:11
Alignment explanation
Indices: 147634043--147634084 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
147634033 ATATAATATG
147634043 ATATAGAATAAA
1 ATATA-AATAAA
147634055 ATATAAATAAA
1 ATATAAATAAA
*
147634066 ATAT-AATGAA
1 ATATAAATAAA
*
147634076 ATAAAAATA
1 ATATAAATA
147634085 CTATCATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
ATATAAATAAA
Found at i:147634206 original size:18 final size:19
Alignment explanation
Indices: 147634183--147634269 Score: 64
Period size: 21 Copynumber: 4.8 Consensus size: 19
147634173 CATAATTTAA
147634183 AATAAAAATAATAT-ATAT
1 AATAAAAATAATATGATAT
147634201 AATAAAATATAAT-T--TAT
1 AATAAAA-ATAATATGATAT
147634218 AAGT-AAAAT-AT-TGA-AT
1 AA-TAAAAATAATATGATAT
* *
147634234 AATGAAAATAACATGATGGAT
1 AATAAAAATAATATGAT--AT
147634255 AATAAAAATAATATG
1 AATAAAAATAATATG
147634270 TAACTAATGT
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
15 4 0.07
16 11 0.20
17 9 0.16
18 12 0.21
19 5 0.09
21 15 0.27
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.31
Consensus pattern (19 bp):
AATAAAAATAATATGATAT
Found at i:147634209 original size:17 final size:19
Alignment explanation
Indices: 147634187--147634227 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
147634177 ATTTAAAATA
147634187 AAAATAAT-ATATATAA-T
1 AAAATAATAATATATAAGT
*
147634204 AAAAT-ATAATTTATAAGT
1 AAAATAATAATATATAAGT
147634222 AAAATA
1 AAAATA
147634228 TTGAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.10
17 12 0.60
18 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAATAATAATATATAAGT
Found at i:147635859 original size:44 final size:44
Alignment explanation
Indices: 147635810--147636155 Score: 239
Period size: 44 Copynumber: 8.2 Consensus size: 44
147635800 GCACAAAGAC
*
147635810 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
147635854 GCCAAATCTGCTGTCTTCGATCTGCT-TCCTG---AT--A-ATAT
1 GCCAAATCTGCTATCTTCGATCTGCTCT-CTGACAATACAGAGAT
* * * * * * *
147635892 GCCAAATCTGCT-TCTTGGATTTACTCTTTGTCGAATACAAATAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGAC-AATACAGAGAT
* * * * *
147635936 GTCAAGTCTACTATC-TCTGATTTGCTCTCTGACCATACAGAGAT
1 GCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATACAGAGAT
* *
147635980 GCCAAATCTGCTATCTTCGATCTACTCCCTGACAATACA-AGGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGA-GAT
* * * * *
147636024 GCCAAAGCTGCTA-CTTGGATTTGC-CCCTCGTCAAATAC-GAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCT-GAC-AATACAG-AGAT
* * *
147636068 TCCAAA--T-C-ATCTTAGATCTGCTCTCTGACAATACAAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
147636108 GCCAAATCTG----CTTCGATCTGCTATCTGACAACACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
147636148 GCCAAATC
1 GCCAAATC
147636156 ATCTTGGATC
Statistics
Matches: 239, Mismatches: 40, Indels: 50
0.73 0.12 0.15
Matches are distributed among these distances:
37 12 0.05
38 15 0.06
39 1 0.00
40 49 0.21
41 16 0.07
42 9 0.04
43 13 0.05
44 107 0.45
45 17 0.07
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:147636107 original size:40 final size:40
Alignment explanation
Indices: 147636057--147636169 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
147636047 CCCCTCGTCA
* * *
147636057 AATACGAAGATTCCAAATCATCTTAGATCTGCTCTCTGAC
1 AATACAAAGATGCCAAATCATCTTAGATCTGCTATCTGAC
*
147636097 AATACAAAGATGCCAAATC-TGCTTCGATCTGCTATCTGAC
1 AATACAAAGATGCCAAATCAT-CTTAGATCTGCTATCTGAC
* * *
147636137 AACACAGAGATGCCAAATCATCTTGGATCTGCT
1 AATACAAAGATGCCAAATCATCTTAGATCTGCT
147636170 TCAGCGTAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.02
40 62 0.97
41 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (40 bp):
AATACAAAGATGCCAAATCATCTTAGATCTGCTATCTGAC
Found at i:147640513 original size:47 final size:47
Alignment explanation
Indices: 147640450--147640554 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
147640440 CCCTTCGGGA
* *
147640450 CTTATCACATTTATACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTAGCCATTCGGC
* *
147640497 CTTATCACATATATACACTTTCACGTCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTAGCCATTCGGC
147640544 CTTATCACATA
1 CTTATCACATA
147640555 ATTAATACTA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTAGCCATTCGGC
Found at i:147645031 original size:40 final size:40
Alignment explanation
Indices: 147644964--147645156 Score: 320
Period size: 40 Copynumber: 4.9 Consensus size: 40
147644954 GAATACACAT
147644964 CACCGGCACGAATGCCCTTC--GACTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
* * * *
147645002 CATCGGCACGAATACCCTTCGGGATTTAGCCTGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
*
147645042 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
147645082 CACCGGCACGAATG-CCTTCGGGACTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
147645121 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGAT
147645157 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 18 0.12
39 38 0.26
40 88 0.61
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (40 bp):
CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAA
Found at i:147645124 original size:79 final size:80
Alignment explanation
Indices: 147644964--147645156 Score: 320
Period size: 79 Copynumber: 2.5 Consensus size: 80
147644954 GAATACACAT
* *
147644964 CACCGGCACGAATGCCCTTC--GACTTAGCCCGGATATAACATCGGCACGAATACCCTTCGGGAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGAC
*
147645027 TTAGCCTGGATATAA
66 TTAGCCCGGATATAA
* *
147645042 CACCGGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACCGGCACGAAT-GCCTTCGGGAC
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGAC
147645106 TTAGCCCGGATATAA
66 TTAGCCCGGATATAA
147645121 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGAT
1 CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGAT
147645157 CATCGTCGAG
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
78 20 0.19
79 58 0.54
80 29 0.27
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (80 bp):
CACCGGCACGAATGCCCTTCGGGACTTAGCCCGGATATAACACCGGCACGAATACCCTTCGGGAC
TTAGCCCGGATATAA
Found at i:147647287 original size:47 final size:47
Alignment explanation
Indices: 147647224--147647328 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
147647214 CCCTTCGGGA
* *
147647224 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
147647271 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
147647318 CTTATCACATA
1 CTTATCACATA
147647329 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:147651162 original size:53 final size:53
Alignment explanation
Indices: 147651081--147651231 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
147651071 CTTACACGGT
* *
147651081 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
147651136 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
147651189 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
147651232 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:147658678 original size:53 final size:53
Alignment explanation
Indices: 147658597--147658747 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
147658587 CTTACACGGT
* *
147658597 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
147658652 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
147658705 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
147658748 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:147667175 original size:53 final size:53
Alignment explanation
Indices: 147667095--147667203 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
147667085 TTTGCTTCTT
*
147667095 TTTCCCTATCTCTTTAATTTTTGTTGTTATTTTGACGAACTTGTTTATGGATA
1 TTTCCCTATCTCTTTAATTTTTGTTGTTATTTTGACGAACATGTTTATGGATA
147667148 TTTCCCTATCTCTTTAATTTTTGTTGTTATTTTGACGAACATGTTTATGGATA
1 TTTCCCTATCTCTTTAATTTTTGTTGTTATTTTGACGAACATGTTTATGGATA
147667201 TTT
1 TTT
147667204 ATGCTATTGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (53 bp):
TTTCCCTATCTCTTTAATTTTTGTTGTTATTTTGACGAACATGTTTATGGATA
Found at i:147673173 original size:22 final size:21
Alignment explanation
Indices: 147673143--147673208 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
147673133 TACAAATTAA
147673143 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
147673165 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
147673186 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
147673205 ATCT
1 ATCT
147673209 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:147673195 original size:19 final size:19
Alignment explanation
Indices: 147673160--147673221 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
147673150 AGATTACAAG
147673160 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
147673181 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
147673200 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
147673219 ATC
1 ATC
147673222 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Done.