Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 478 of 770
Found at i:147673986 original size:206 final size:206
Alignment explanation
Indices: 147673628--147674115 Score: 729
Period size: 206 Copynumber: 2.4 Consensus size: 206
147673618 CTCTTTTCTA
* * * *
147673628 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCATGCGAAAACCAAATCAAC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * *
147673693 TATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCTA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATA
* * * * * * * *
147673758 ATCATCTGAAGGTTAGATCTGCTATGTGTTTGCCCTCCGTCGAATATGGAGACGCCAAACTTTGA
131 AACATCCGAAGGTTACATCTGCTATGTGTCTACCCTCCGCCAAATATGGAGACGCCAAACTTCGA
147673823 TTTGTTCTCTG
196 TTTGTTCTCTG
147673834 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
* * *
147673899 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTGTTTCAGTATA
66 TATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATA
* *
147673964 AACATCCGAGGGTTACATCTGCTATGTGTCTACTCTCCGCCAAATATGGAGACGCCAAACTTCGA
131 AACATCCGAAGGTTACATCTGCTATGTGTCTACCCTCCGCCAAATATGGAGACGCCAAACTTCGA
147674029 TTTGTTCTCTG
196 TTTGTTCTCTG
*
147674040 ACAATACAGAGATGCCAAATCATCTTAGA------T-ATCATAAGCACGTGAAAGCCAAATCAGC
1 ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
*
147674098 TATGTCTTCAATTTGTTC
66 TATGTCTTCGATTTGTTC
147674116 TCCAAACTTT
Statistics
Matches: 260, Mismatches: 22, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
199 44 0.17
200 1 0.00
206 215 0.83
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (206 bp):
ACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGC
TATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATACCAAACCATCTTGGATCTGCTTCAGTATA
AACATCCGAAGGTTACATCTGCTATGTGTCTACCCTCCGCCAAATATGGAGACGCCAAACTTCGA
TTTGTTCTCTG
Found at i:147674184 original size:305 final size:305
Alignment explanation
Indices: 147673812--147674374 Score: 995
Period size: 305 Copynumber: 1.8 Consensus size: 305
147673802 TATGGAGACG
147673812 CCAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
1 CCAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
147673877 AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATC
66 AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATC
* * * *
147673942 ATC-TTGGATCTG-TTTCAGTATAAACATCCGAGGGTTACATCTGCTATGTGTCTACTCTCCGCC
131 A-CATTGGATCTGCTTT-AGTATAAACATACGAAGGCTACATCTACTATGTGTCTACTCTCCGCC
147674005 AAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
194 AAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
147674070 ATCATAAGCACGTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCT
259 ATCATAAGCACGTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCT
*
147674117 CCAAACTTTGATTTGTTCTCTGACAATACGGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
1 CCAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
*
147674182 AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATC
* * * * *
147674247 ACATTGGATCTGCTTTAGTATAAACATATGAAGGCTAGATCTACTATGTGTCTGCTCTCCGTCGA
131 ACATTGGATCTGCTTTAGTATAAACATACGAAGGCTACATCTACTATGTGTCTACTCTCCGCCAA
147674312 ATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
196 ATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAT
147674375 TTGCTTCAGC
Statistics
Matches: 245, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
304 1 0.00
305 241 0.98
306 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (305 bp):
CCAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATC
ACATTGGATCTGCTTTAGTATAAACATACGAAGGCTACATCTACTATGTGTCTACTCTCCGCCAA
ATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATAT
CATAAGCACGTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCT
Found at i:147674488 original size:44 final size:43
Alignment explanation
Indices: 147674421--147674584 Score: 152
Period size: 44 Copynumber: 3.7 Consensus size: 43
147674411 TGTCTTTGAT
* * * * *
147674421 TTGTTCCTTGTAAGCACAAGGATGCCAAATCTGCTATCTTCAA
1 TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGA
**
147674464 CTTGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTCGA
1 -TTGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCGA
* * * * * *
147674507 TCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
1 T-TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGA
147674552 TTTGTTCCCTATAAACACAGGGATGCCAAATCT
1 -TTGTTCCCTATAAACACAGGGATGCCAAATCT
147674585 TGTTTCTTTG
Statistics
Matches: 94, Mismatches: 20, Indels: 12
0.75 0.16 0.10
Matches are distributed among these distances:
42 3 0.03
43 12 0.13
44 63 0.67
45 13 0.14
46 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
TTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCGA
Found at i:147675449 original size:14 final size:14
Alignment explanation
Indices: 147675430--147675500 Score: 72
Period size: 14 Copynumber: 4.9 Consensus size: 14
147675420 TTGGCCTCTC
*
147675430 CATTTTTATTTTTT
1 CATTTTTTTTTTTT
147675444 CATTTTTCTCTTTTTT
1 CATTTTT-T-TTTTTT
*
147675460 TATTTTTTTCTTTTT
1 CATTTTTTT-TTTTT
147675475 C-TTTTCTTTTTTTT
1 CATTTT-TTTTTTTT
*
147675489 CCTTTTTTTTTT
1 CATTTTTTTTTT
147675501 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
14 24 0.49
15 13 0.27
16 12 0.24
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.82
Consensus pattern (14 bp):
CATTTTTTTTTTTT
Found at i:147675453 original size:24 final size:24
Alignment explanation
Indices: 147675426--147675476 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
147675416 CACCTTGGCC
147675426 TCTCCATTTTTA-TTTTTTCATTTT
1 TCTCCATTTTTATTTTTTTC-TTTT
**
147675450 TCTCTTTTTTTATTTTTTTCTTTT
1 TCTCCATTTTTATTTTTTTCTTTT
147675474 TCT
1 TCT
147675477 TTTCTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (24 bp):
TCTCCATTTTTATTTTTTTCTTTT
Found at i:147675459 original size:16 final size:16
Alignment explanation
Indices: 147675438--147675495 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
147675428 TCCATTTTTA
147675438 TTTTTTCATTTTTCTC
1 TTTTTTCATTTTTCTC
* *
147675454 TTTTTTTATTTTTTTC
1 TTTTTTCATTTTTCTC
*
147675470 -TTTTTC--TTTTCTT
1 TTTTTTCATTTTTCTC
*
147675483 TTTTTTCCTTTTT
1 TTTTTTCATTTTT
147675496 TTTTTGAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 5 0.15
16 18 0.53
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTCATTTTTCTC
Found at i:147675468 original size:8 final size:8
Alignment explanation
Indices: 147675432--147675474 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
147675422 GGCCTCTCCA
147675432 TTTTTATT
1 TTTTTATT
*
147675440 TTTTCATT
1 TTTTTATT
* *
147675448 TTTCTCTT
1 TTTTTATT
147675456 TTTTTATT
1 TTTTTATT
*
147675464 TTTTTCTT
1 TTTTTATT
147675472 TTT
1 TTT
147675475 CTTTTCTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTATT
Found at i:147675484 original size:24 final size:25
Alignment explanation
Indices: 147675432--147675488 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
147675422 GGCCTCTCCA
147675432 TTTTTA-TTTTTTCATTTTTCTCTT
1 TTTTTATTTTTTTCATTTTTCTCTT
147675456 TTTTTATTTTTTTC-TTTTTCT-TT
1 TTTTTATTTTTTTCATTTTTCTCTT
*
147675479 TCTTT-TTTTT
1 TTTTTATTTTT
147675489 CCTTTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 5 0.16
23 6 0.19
24 13 0.42
25 7 0.23
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (25 bp):
TTTTTATTTTTTTCATTTTTCTCTT
Found at i:147675495 original size:11 final size:10
Alignment explanation
Indices: 147675462--147675499 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
147675452 TCTTTTTTTA
147675462 TTTTTTTCTT
1 TTTTTTTCTT
147675472 TTTCTTTTCTT
1 TTT-TTTTCTT
*
147675483 TTTTTTCCTT
1 TTTTTTTCTT
147675493 TTTTTTT
1 TTTTTTT
147675500 TGAAATAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:147675500 original size:16 final size:15
Alignment explanation
Indices: 147675432--147675500 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
147675422 GGCCTCTCCA
*
147675432 TTTTTATTTTTTCATT
1 TTTTTTTTTTTTC-TT
* *
147675448 TTTCTCTTTTTTT-AT
1 TTT-TTTTTTTTTCTT
*
147675463 TTTTTTCTTTTTCTT
1 TTTTTTTTTTTTCTT
* *
147675478 TTCTTTTTTTTCCTT
1 TTTTTTTTTTTTCTT
147675493 TTTTTTTT
1 TTTTTTTT
147675501 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
14 7 0.17
15 24 0.59
16 3 0.07
17 7 0.17
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTTTTTTCTT
Found at i:147680356 original size:22 final size:21
Alignment explanation
Indices: 147680326--147680391 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
147680316 TACAAATTAA
147680326 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
147680348 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
147680369 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
147680388 ATCT
1 ATCT
147680392 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:147680378 original size:19 final size:19
Alignment explanation
Indices: 147680343--147680440 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
147680333 AGATTACAAG
147680343 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
147680364 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
147680383 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
147680400 ATCAAATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
147680419 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
147680438 ATC
1 ATC
147680441 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:147680409 original size:36 final size:37
Alignment explanation
Indices: 147680343--147680440 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
147680333 AGATTACAAG
*
147680343 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCAAATCTAAGATTGCAT
147680383 ATCATATCTAAGATTG-TATCAAATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCAAATCTAAGATTGCAT
147680419 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
147680441 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCAAATCTAAGATTGCAT
Found at i:147681070 original size:11 final size:11
Alignment explanation
Indices: 147681027--147681082 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
147681017 AAATTAAAAA
*
147681027 TAAAAAATAAT
1 TAAAAATTAAT
147681038 TATAATAATTAA-
1 TA-AA-AATTAAT
* *
147681050 TAATATATTATT
1 TAA-AAATTAAT
147681062 TAAAAATTAAT
1 TAAAAATTAAT
147681073 TAAAAATTAA
1 TAAAAATTAA
147681083 ATGCGTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
11 23 0.64
12 8 0.22
13 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAAAATTAAT
Found at i:147681827 original size:16 final size:16
Alignment explanation
Indices: 147681806--147681840 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
147681796 GCAAAGTTAA
147681806 AATATATATATATATT
1 AATATATATATATATT
147681822 AATATATATATATATT
1 AATATATATATATATT
147681838 AAT
1 AAT
147681841 TTTTCCATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATATATATATATATT
Found at i:147681828 original size:18 final size:18
Alignment explanation
Indices: 147681802--147681839 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
147681792 ATTAGCAAAG
147681802 TTAAAATATATATATATA
1 TTAAAATATATATATATA
147681820 TT--AATATATATATATA
1 TTAAAATATATATATATA
147681836 TTAA
1 TTAA
147681840 TTTTTCCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
16 16 0.89
18 2 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAAAATATATATATATA
Found at i:147683396 original size:13 final size:14
Alignment explanation
Indices: 147683380--147683415 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
147683370 CAATCTCATA
147683380 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
147683393 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
147683406 TCTC-ATTTCA
1 TCTCAATTTCA
147683416 TTCCAATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:147683405 original size:18 final size:19
Alignment explanation
Indices: 147683367--147683407 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
147683357 TGGTTCATGT
147683367 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
147683386 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
147683404 TTTC
1 TTTC
147683408 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:147684068 original size:15 final size:15
Alignment explanation
Indices: 147684048--147684094 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
147684038 TATTATATAT
147684048 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
147684063 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
147684078 TTCAATCAATATAAA
1 TTCAATCAATATAAA
147684093 TT
1 TT
147684095 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:147685040 original size:23 final size:23
Alignment explanation
Indices: 147685004--147685047 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
147684994 GTCCCCTGCT
147685004 ATTCTGTTTCTTTCCTTCTTTTA
1 ATTCTGTTTCTTTCCTTCTTTTA
* * *
147685027 ATTCTTTTTGTTTCTTTCTTT
1 ATTCTGTTTCTTTCCTTCTTT
147685048 GTTTCTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.07, C:0.18, G:0.05, T:0.70
Consensus pattern (23 bp):
ATTCTGTTTCTTTCCTTCTTTTA
Found at i:147685061 original size:2 final size:2
Alignment explanation
Indices: 147685054--147685083 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
147685044 CTTTGTTTCT
147685054 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
147685084 ATGACAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:147686912 original size:21 final size:20
Alignment explanation
Indices: 147686887--147686926 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
147686877 ATAAACATAA
*
147686887 AGAAATAAAAAGCAAAAAAAG
1 AGAAA-AAAAAACAAAAAAAG
*
147686908 AGAAAAAAAAATAAAAAAA
1 AGAAAAAAAAACAAAAAAA
147686927 TTACCTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (20 bp):
AGAAAAAAAAACAAAAAAAG
Found at i:147700697 original size:71 final size:71
Alignment explanation
Indices: 147700576--147700709 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
147700566 GTTTTCCAAG
* * *
147700576 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
147700641 GTTTCA
66 GTTTCA
* * *
147700647 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
147700710 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:147700749 original size:160 final size:160
Alignment explanation
Indices: 147700485--147701011 Score: 915
Period size: 160 Copynumber: 3.4 Consensus size: 160
147700475 TTTGTTTTTC
147700485 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
147700550 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
147700615 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
147700645 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
147700710 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
147700775 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
147700805 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
147700869 -TGC--TTT-ATT-ATG-TTT-C---AAAATCA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
147700923 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* *
147700953 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT---GGCACGCTGA-GTAATTTCAAT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAAT
147701012 CTTATAAATC
Statistics
Matches: 363, Mismatches: 3, Indels: 17
0.95 0.01 0.04
Matches are distributed among these distances:
144 9 0.02
145 10 0.03
148 98 0.27
149 7 0.02
152 1 0.00
153 3 0.01
154 3 0.01
155 3 0.01
156 3 0.01
158 3 0.01
159 2 0.01
160 221 0.61
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (160 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:147700857 original size:71 final size:71
Alignment explanation
Indices: 147700736--147701057 Score: 381
Period size: 71 Copynumber: 4.5 Consensus size: 71
147700726 GTTTTCCAAG
* * *
147700736 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT-TTA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATATTA
147700800 TGTTTC
66 TGTTTC
* * *
147700806 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTG
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA----
147700871 CTTTATTATGTTTC
61 ---TATTATGTTTC
* *
147700885 AAAATC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAAT-TTA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATATTA
147700948 TGTTTC
66 TGTTTC
* * *
147700954 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCT---GGCACGCTGA-GTAATTTCAATCTT
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATATT
***
147701015 ATAAATC
65 ATGTTTC
147701022 AAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
147701058 GGCACTGTAG
Statistics
Matches: 220, Mismatches: 19, Indels: 28
0.82 0.07 0.10
Matches are distributed among these distances:
66 13 0.06
67 32 0.15
68 14 0.06
69 9 0.04
70 7 0.03
71 81 0.37
77 48 0.22
78 7 0.03
79 9 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATATTA
TGTTTC
Found at i:147706232 original size:28 final size:28
Alignment explanation
Indices: 147706163--147706263 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
147706153 GACAAGATTG
* * * *
147706163 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
147706193 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
147706221 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
147706250 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
147706264 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:147714193 original size:28 final size:28
Alignment explanation
Indices: 147714124--147714224 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
147714114 GACAAGATTG
* * * *
147714124 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
147714154 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
147714182 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
147714211 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
147714225 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:147718260 original size:93 final size:93
Alignment explanation
Indices: 147718132--147718302 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
147718122 GCCCATAAGT
* * *
147718132 GAACTCAGACTCAACTCAAAGAGCTTGGGCGTTCGCATCAATAAGTGAACTCGGACTAAACTCAA
1 GAACTCAGACTCAACTCAAAGAGCTTGGACATTCGCATCAATAAGTGAACTCAGACTAAACTCAA
147718197 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
147718225 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAGACTCAACTCAAAGAGCTT-GGACATTCGCATCAATAAGTGAACTCAGACTAAACTCA
* *
147718289 ACGAGTTTGGATGC
65 ACGAGCTCGGATGC
147718303 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAAAGAGCTTGGACATTCGCATCAATAAGTGAACTCAGACTAAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:147718287 original size:46 final size:45
Alignment explanation
Indices: 147718124--147718295 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
147718114 TGTAACCCGC
* * *
147718124 CCATAAGTGAACTCAGACTCAACTCAAAGAGCTTGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAG-TTCGGCATTCGCAT
* * * * *
147718170 CAATAAGTGAACTCGGACTAAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* *** *
147718216 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGTTCGG-CATTCGCAT
147718263 CCATAAGTGAACTCAGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTT
147718296 TGGATGCTCA
Statistics
Matches: 98, Mismatches: 21, Indels: 14
0.74 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 55 0.56
47 31 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:147721117 original size:40 final size:40
Alignment explanation
Indices: 147721046--147721263 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
147721036 AAACCAAGTA
* * *
147721046 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
147721085 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
147721125 CCTTCGGAACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
147721165 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
147721205 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
147721245 CCTTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
147721264 TTATCATCCG
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 150 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:147723784 original size:29 final size:29
Alignment explanation
Indices: 147723722--147723824 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
147723712 GTGACGAGAT
* * *
147723722 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
147723751 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
147723780 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
147723809 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
147723825 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:147733535 original size:25 final size:25
Alignment explanation
Indices: 147733506--147733553 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
147733496 CCTTATAATG
* * *
147733506 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
147733531 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
147733554 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:147733622 original size:20 final size:20
Alignment explanation
Indices: 147733597--147733655 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
147733587 TAAATATGGT
147733597 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
147733617 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
147733637 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
147733656 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:147733736 original size:23 final size:24
Alignment explanation
Indices: 147733706--147733800 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
147733696 GAGGAAGTGA
147733706 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
147733729 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
147733753 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
147733777 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
147733801 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:147733774 original size:47 final size:49
Alignment explanation
Indices: 147733707--147733800 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
147733697 AGGAAGTGAA
*
147733707 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
147733754 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
147733801 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:147734043 original size:38 final size:38
Alignment explanation
Indices: 147733992--147734154 Score: 241
Period size: 38 Copynumber: 4.4 Consensus size: 38
147733982 CGTTTACAGT
147733992 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
147734030 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
147734061 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
147734099 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
147734137 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
147734155 GCATGATTGA
Statistics
Matches: 113, Mismatches: 4, Indels: 15
0.86 0.03 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 69 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:147734054 original size:31 final size:31
Alignment explanation
Indices: 147734016--147734131 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
147734006 AGTATTATGA
147734016 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
147734047 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
147734083 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
147734116 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
147734132 TATGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:147734068 original size:69 final size:69
Alignment explanation
Indices: 147733992--147734131 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
147733982 CGTTTACAGT
147733992 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
147734057 ATGA
66 ATGA
*
147734061 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
147734126 ATGA
66 ATGA
147734130 AA
1 AA
147734132 TATGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:147739876 original size:25 final size:25
Alignment explanation
Indices: 147739847--147739894 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
147739837 TTATAATATG
* * *
147739847 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
147739872 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
147739895 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:147739963 original size:20 final size:20
Alignment explanation
Indices: 147739938--147739996 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
147739928 TAAATATGGT
147739938 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
147739958 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
147739978 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
147739997 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:147740077 original size:23 final size:24
Alignment explanation
Indices: 147740047--147740141 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
147740037 GAGGAAGTGA
147740047 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
147740070 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
147740094 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
147740118 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
147740142 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:147740115 original size:47 final size:49
Alignment explanation
Indices: 147740048--147740141 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
147740038 AGGAAGTGAA
*
147740048 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
147740095 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
147740142 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:147740405 original size:31 final size:31
Alignment explanation
Indices: 147740356--147740468 Score: 124
Period size: 31 Copynumber: 3.5 Consensus size: 31
147740346 AGTATTATGA
147740356 AATATG-AA-ATG-AAAGGCTTCGGCCCAGT
1 AATATGAAATATGAAAAGGCTTCGGCCCAGT
147740384 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAATATGAAAAGGCTTCGGCCCAG-----T
*
147740420 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAATATGAAAAGGCTTCGGCCCAGT
*
147740453 ATTATGAAATATGAAA
1 AATATGAAATATGAAA
147740469 TATGAAAAGG
Statistics
Matches: 72, Mismatches: 3, Indels: 17
0.78 0.03 0.18
Matches are distributed among these distances:
28 6 0.08
29 2 0.03
30 3 0.04
31 30 0.42
33 1 0.01
36 1 0.01
38 29 0.40
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (31 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGT
Found at i:147740436 original size:38 final size:38
Alignment explanation
Indices: 147740384--147740491 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
147740374 TCGGCCCAGT
147740384 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
147740422 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
147740460 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
147740492 GCATGATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 53 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:147741364 original size:29 final size:29
Alignment explanation
Indices: 147741302--147741404 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
147741292 GTGACGAGAT
* * *
147741302 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
147741331 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
147741360 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
147741389 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
147741405 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:147743260 original size:40 final size:40
Alignment explanation
Indices: 147743201--147743342 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
147743191 AAATTGAATG
* *
147743201 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGA-CCCGAAGACAATTATGCTAGAAACT
* * * ***
147743241 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
147743281 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
147743321 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
147743343 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 82 0.95
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:147743343 original size:40 final size:39
Alignment explanation
Indices: 147743240--147743368 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
147743230 TGCTGGAAAT
* * *
147743240 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
147743280 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
147743320 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
147743360 TATATCCGG
1 TATATCCGG
147743369 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:147751212 original size:40 final size:40
Alignment explanation
Indices: 147751146--147751312 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
147751136 AAATTGAATG
* * *
147751146 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
147751185 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
147751225 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
147751265 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
147751305 ATATCCGG
1 ATATCCGG
147751313 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:147757242 original size:26 final size:26
Alignment explanation
Indices: 147757213--147757322 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
147757203 TGATACAAAT
147757213 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
147757239 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
147757265 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
147757291 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
147757317 TGATAA
1 TGATAA
147757323 GAAATTCATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:147758805 original size:25 final size:25
Alignment explanation
Indices: 147758777--147758825 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
147758767 TACAGTTTAC
147758777 CCCTAGGAGATAAATT-ACCGAAATA
1 CCCTAGG-GATAAATTGACCGAAATA
* *
147758802 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
147758826 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGGATAAATTGACCGAAATA
Found at i:147759316 original size:135 final size:135
Alignment explanation
Indices: 147759073--147759355 Score: 498
Period size: 135 Copynumber: 2.1 Consensus size: 135
147759063 GAGTAGTCTC
*
147759073 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
147759138 GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCT-GCCCAGTACCAC
66 GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
147759202 TGTTA
131 TGTTA
147759207 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
147759272 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGG-CCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
147759336 ACTGTTG
129 ACTGTTA
**
147759343 CCTGAATGGGCTT
1 CCCAAATGGGCTT
147759356 AGGCCCAATG
Statistics
Matches: 142, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
134 20 0.14
135 80 0.56
136 42 0.30
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:147760625 original size:12 final size:12
Alignment explanation
Indices: 147760608--147760638 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
147760598 ACTCGGGGAA
147760608 GAGGCCGTGGTC
1 GAGGCCGTGGTC
147760620 GAGGCCGTGGTC
1 GAGGCCGTGGTC
147760632 GAGGCCG
1 GAGGCCG
147760639 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:147765540 original size:26 final size:26
Alignment explanation
Indices: 147765511--147765620 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
147765501 TGATACAAAT
147765511 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
147765537 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
147765563 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
147765589 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
147765615 TGATAA
1 TGATAA
147765621 GAATTCATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:147767102 original size:26 final size:26
Alignment explanation
Indices: 147767073--147767125 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
147767063 TTTACAGTTT
147767073 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
147767099 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
147767125 T
1 T
147767126 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:147767630 original size:136 final size:134
Alignment explanation
Indices: 147767373--147767655 Score: 505
Period size: 136 Copynumber: 2.1 Consensus size: 134
147767363 GAGTAGTCTC
*
147767373 CCCAAATGGGCTTGCATATGTTATTATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
1 CCCAAATGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
147767438 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCACT
66 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCACT
147767503 GTTA
131 GTTA
147767507 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTA-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
147767572 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
64 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCT-GCCCAGTACC
147767636 ACTGTTA
128 ACTGTTA
**
147767643 CCTGAATGGGCTT
1 CCCAAATGGGCTT
147767656 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
134 20 0.14
135 16 0.11
136 107 0.75
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (134 bp):
CCCAAATGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCACT
GTTA
Found at i:147770322 original size:15 final size:17
Alignment explanation
Indices: 147770294--147770325 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
147770284 TTGTATATAT
147770294 TATATTTATATTATGTA
1 TATATTTATATTATGTA
147770311 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
147770326 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:147780578 original size:61 final size:61
Alignment explanation
Indices: 147780483--147780597 Score: 221
Period size: 61 Copynumber: 1.9 Consensus size: 61
147780473 CATATGTTTC
*
147780483 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
147780544 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
147780598 ATTTCAATTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.23
Consensus pattern (61 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
Found at i:147780672 original size:137 final size:137
Alignment explanation
Indices: 147780407--147780677 Score: 388
Period size: 137 Copynumber: 2.0 Consensus size: 137
147780397 GTTTTATTTC
* * *
147780407 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
*** * *
147780472 TCATATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCATATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTA
147780537 TTTTTAA
131 TTTTTAA
147780544 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
* *
147780608 CT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGA
65 CTCATATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCT-GA
147780670 GGTATTTT
127 GGTATTTT
147780678 CAATTTTCGT
Statistics
Matches: 120, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
135 42 0.35
136 2 0.02
137 73 0.61
138 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (137 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
TCATATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTA
TTTTTAA
Found at i:147780819 original size:76 final size:77
Alignment explanation
Indices: 147780709--147781410 Score: 254
Period size: 76 Copynumber: 8.6 Consensus size: 77
147780699 CTGCCTTTCA
* *
147780709 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTT-
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGT-ATTTTC
147780772 AATTTCTGTTGTC
65 AATTTCTGTTGTC
* *
147780785 AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTATTTTC
* *
147780850 AATTTCCGTTTTTC
65 AATTTCTG-TTGTC
* * * * * *
147780864 AATTTCTGCCTTTCAAAAAAAAAATCGACTCATATTGTGAGAGGTGAGTTAAGTCT-TGGCTCAC
1 AA------------AA---AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--CAC
* * *
147780928 ACGCTGAGCTATTTTCAATTTCTATCAT-TC
49 ACGCCGAGGTATTTTCAATTTCTGT--TGTC
* * *
147780958 --AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCACACGCCGAGGTATTTTC
* *
147781021 AATTTCCGTTTTTC
65 AATTTCTG-TTGTC
* * * * *
147781035 AATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCT-TGGCTCACG
1 AA------------AA--AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACG
* *
147781099 CGCTGAGCTATTTTCAATTTCTGTCTTTC
52 C-C-GAGGTATTTTCAATTTCTGT-TGTC
* * * * * *
147781128 ---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTTTTTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG-GCACACGCCGAGG-----TA
* * *
147781190 TTTGTCAATTTATATTTTTC
60 TTT-TCAATTTCT-GTTGTC
* * * *** *
147781210 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATCGAGGCATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCC-TCAGGCACACGCCGAGGTATTTTC
147781271 AAAATTTGCT-TT-TC
65 --AATTT-CTGTTGTC
* * **
147781285 AAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGTTGAGG
1 AA---AA-----AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGG
*
147781349 TATTTTCAATTTCTGTCTTTC
58 TATTTTCAATTTCTGT-TGTC
* * *
147781370 --AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCA
147781411 AGACGCTGAA
Statistics
Matches: 487, Mismatches: 66, Indels: 147
0.70 0.09 0.21
Matches are distributed among these distances:
75 41 0.08
76 85 0.17
77 68 0.14
78 27 0.06
79 6 0.01
80 4 0.01
81 49 0.10
82 17 0.03
83 7 0.01
84 1 0.00
85 16 0.03
86 2 0.00
87 36 0.07
91 10 0.02
92 3 0.01
93 58 0.12
94 56 0.11
95 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (77 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTATTTTCA
ATTTCTGTTGTC
Found at i:147780908 original size:170 final size:169
Alignment explanation
Indices: 147780542--147781175 Score: 888
Period size: 171 Copynumber: 3.7 Consensus size: 169
147780532 AGGTATTTTT
* *
147780542 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTATTTTCAAT
* * *
147780606 TTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
65 TTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGA
*
147780670 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAA
130 GGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTCAAA
*
147780711 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTT-AA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCT-ATTTTCAA
* * *
147780774 TTTCTGT-TGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGC
64 TTTCTGTCTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGC
147780838 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
127 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * * * *
147780881 AAAAAAATCGACTCATATTGTGAGAGGTGAGTTAAGTCTTGGCTCACACGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTATTTTCAA
* * *
147780946 TTTCTATCAT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGATCACACGCC
64 TTTCTGTC-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCC
147781010 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC-AA
128 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * * *
147781051 AAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTATTTTCAA
* * *
147781116 TTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
64 TTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACAC
147781176 ACTGAGGTTT
Statistics
Matches: 431, Mismatches: 24, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
169 117 0.27
170 127 0.29
171 165 0.38
172 19 0.04
173 2 0.00
174 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (169 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACACGCTGAGCTATTTTCAATT
TCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAG
GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
Found at i:147780959 original size:94 final size:94
Alignment explanation
Indices: 147780785--147780959 Score: 208
Period size: 94 Copynumber: 1.9 Consensus size: 94
147780775 TTCTGTTGTC
* * * *
147780785 AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTC
* **
147780850 AATTTCCGTTTTTCAATTTCTGCCTTTCA
66 AATTTCCATCATTCAATTTCTGCCTTTCA
* * * * * *
147780879 AAAAAAAAATCGACTCATATTGTGAGAGGTGAGTTAAGTCT-TGGCTCACACGCTGAGCTATTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-TCACACGCCGAGCTATTTT
*
147780943 CAATTTCTATCATTCAA
65 CAATTTCCATCATTCAA
147780960 AAAAATCAAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
93 2 0.03
94 64 0.97
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (94 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTC
AATTTCCATCATTCAATTTCTGCCTTTCA
Found at i:147781005 original size:77 final size:77
Alignment explanation
Indices: 147780881--147781026 Score: 202
Period size: 77 Copynumber: 1.9 Consensus size: 77
147780871 GCCTTTCAAA
* * * * ** * *
147780881 AAAAAAATCGACTCATATTGTGAGAGGTGAGTTAAGTCTTGGCTCACACGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGATCACACGCCGAGCTATTTTCAA
147780946 TTTCTATCATTC
66 TTTCTATCATTC
* *
147780958 AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGATCACACGCCGAGCTATTTTCAA
147781023 TTTC
66 TTTC
147781027 CGTTTTTCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
77 59 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGATCACACGCCGAGCTATTTTCAA
TTTCTATCATTC
Found at i:147781111 original size:93 final size:93
Alignment explanation
Indices: 147780958--147781129 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
147780948 TCTATCATTC
* *
147780958 AAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTACGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGCTATTTTCAA
*
147781023 TTTCCGTTTTTCAATTTCTGCCTTTCAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAA
* * ** * * *
147781051 AAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTACGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGCTATTTTCAA
*
147781116 TTTCTGTCTTTCAA
66 TTTCCGTCTTTCAA
147781130 AAAATCAACT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTACGAGAGGTGAATTGAGCCTCAGATCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAA
Found at i:147781255 original size:81 final size:81
Alignment explanation
Indices: 147781053--147781333 Score: 251
Period size: 81 Copynumber: 3.5 Consensus size: 81
147781043 CCTTTCAAAA
* * * * * * *
147781053 AAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTG-GCTCACGCGCTGA-G----CTATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGGTTTTTTTTTT
* *
147781112 TCAATTTCTGTCTTTC
66 TCAATTTATATCTTTC
*
147781128 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTTTTTTTTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGGTTTTTTTTT
*
147781192 TGTCAATTTATATTTTTC
65 T-TCAATTTATATCTTTC
*
147781210 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAG-TCACATA-TCGAGGCATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACT-GAGG--TTTT---
* *
147781273 AATTTGCTTTTCAAGTTA-A-GTTTC
60 --TTT--TTTTCAATTTATATCTTTC
147781297 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
147781334 CAAGACACGT
Statistics
Matches: 172, Mismatches: 15, Indels: 25
0.81 0.07 0.12
Matches are distributed among these distances:
75 3 0.02
76 42 0.24
77 1 0.01
80 1 0.01
81 48 0.28
82 18 0.10
83 4 0.02
87 41 0.24
88 4 0.02
89 7 0.04
90 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (81 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGATCACACACTGAGGTTTTTTTTTT
TCAATTTATATCTTTC
Found at i:147781444 original size:73 final size:74
Alignment explanation
Indices: 147781297--147781437 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 74
147781287 GTTAAGTTTC
* * *
147781297 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA-ACGCTGAAGTATTTTCAATTTC
147781362 TGTCTTTCAA
65 TGTCTTTCAA
* * *
147781372 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-ACGCTGAAGTGTTTTCCATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAAGTATTTTCAATTTCT
147781436 GT
66 GT
147781438 TCTTCAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 21 0.35
75 39 0.65
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGAACGCTGAAGTATTTTCAATTTCT
GTCTTTCAA
Found at i:147781498 original size:249 final size:243
Alignment explanation
Indices: 147780960--147781614 Score: 635
Period size: 249 Copynumber: 2.6 Consensus size: 243
147780950 TATCATTCAA
* * * * * * *
147780960 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGA-TCACACGCCGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGACTCACAAGCTGAGGCATTTTCAAA
* * * ** * * * *
147781024 TTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCC
65 TTCTGCTTTTCAAATTAAG-TTTTC--CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
** * *
147781089 TTGGC-TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAG
127 -T--CAAGACACGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAG
* * *
147781153 GTGAGTTGAGCTTCAGATCACACACTGAGGTTTTTTTTTTGTCAATTTATATTTTTC
189 GTGAGTTGAACCTCA-A-CACACACTGAGGTTTTTTTTTTGTCAATTTATATGTTTC
* * *
147781210 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGTCACATATC-GAGGCATTTTCAAA
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGACTCACA-AGCTGAGGCATTTTC-AA
*
147781274 ATT-TGCTTTTCAAGTTAAG-TTT-C-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
64 ATTCTGCTTTTCAAATTAAGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
147781335 AAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGA
129 AAGACACGCTGAGGTATTTTCAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGA
* * * * *
147781400 GTTGAACCTC-A-AGACGCTGAAGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTC
193 GTTGAACCTCAACACACACTG-AG-GTTTT---TTT-T-TT-GTCAATTTATATGTTTC
* * * *
147781457 AAAAAAATCAGCTCATATTGCAAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAA
1 --AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGACTCACAAGCTGAGGCATTTTCAA
* ** *
147781522 ATTCTGTTTTTCAAATTTTGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCC
64 ATTCTGCTTTTCAAATTAAG-TTTTCC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
147781587 TCAGGATACGCTGAGGTATTTTCAATTT
127 TCAAGACACGCTGAGGTATTTTCAATTT
147781615 TTTTTTTCAA
Statistics
Matches: 340, Mismatches: 43, Indels: 40
0.80 0.10 0.09
Matches are distributed among these distances:
239 6 0.02
240 2 0.01
241 7 0.02
242 29 0.09
243 37 0.11
244 37 0.11
245 1 0.00
246 2 0.01
247 13 0.04
248 9 0.03
249 66 0.19
250 62 0.18
251 8 0.02
252 1 0.00
254 60 0.18
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (243 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGACTCACAAGCTGAGGCATTTTCAAAT
TCTGCTTTTCAAATTAAGTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAACCTCAACACACACTGAGGTTTTTTTTTTGTCAATTTATATGTTTC
Found at i:147781551 original size:15 final size:14
Alignment explanation
Indices: 147781515--147781547 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
147781505 CGCTGAGGTA
147781515 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
147781529 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
147781543 TTTTC
1 TTTTC
147781548 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:147781757 original size:91 final size:88
Alignment explanation
Indices: 147781351--147781881 Score: 399
Period size: 87 Copynumber: 6.0 Consensus size: 88
147781341 CGTTGAGGTA
* * * *
147781351 TTTTCAATTTCTGTCTT-TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA---A
1 TTTTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCA
* * * * * *
147781412 GACGCTGAAGTGTTTTCCATTTCTGT
64 CACGCCGAGGTATTTTCAATTT-TTT
* * * * * **
147781438 TCTTCAATTTCTGTGTT-TCAAAAAAATCAGCTCATATTGCAAGTGGTGAGTTGAGCCTTGACTC
1 TTTTCAATTTATGT-TTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGGC
* * *
147781502 ACACGCTGAGGTATTTTCAAATTCTGT
63 ACACGCCGAGGTATTTTC-AATTTTTT
* * *
147781529 TTTTCAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG-
1 TTTTC-AATTTATGTTTGT-C-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGC
* *
147781592 ATACGCTGAGGTATTTTCAATTTTTT
63 ACACGCCGAGGTATTTTCAATTTTTT
147781618 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCCA
1 TTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG-CA
147781683 CACGCCGAGGTATTTTCAATTGATTTTT
64 CACGCCGAGGTATTTTCAA-T--TTTTT
** *
147781711 TTTTTTATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCAGGTC
1 TTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGG-C
*** * * **
147781773 ACATATCGAGGTATTTTCATAATCTGC
63 ACACGCCGAGGTATTTTCA-ATTTTTT
* * *
147781800 TTTACAAATTT-TGTTT-T--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGCTC
1 TTTTC-AATTTATGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCAC
* *
147781860 ACGTGCTGAGCTATTTTCAATT
65 AC--GCCGAGGTATTTTCAATT
147781882 CCTGTTTTTA
Statistics
Matches: 372, Mismatches: 50, Indels: 45
0.80 0.11 0.10
Matches are distributed among these distances:
85 3 0.01
86 4 0.01
87 96 0.26
88 54 0.15
89 24 0.06
90 44 0.12
91 81 0.22
92 45 0.12
93 17 0.05
94 4 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (88 bp):
TTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCACA
CGCCGAGGTATTTTCAATTTTTT
Found at i:147781758 original size:179 final size:179
Alignment explanation
Indices: 147781351--147781881 Score: 541
Period size: 179 Copynumber: 3.0 Consensus size: 179
147781341 CGTTGAGGTA
* * * *
147781351 TTTTC-AATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAAATTT-TGTCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT
* * * * *
147781413 ACGCTGAAGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
65 ACGCTGAGGTATTTTCAATTT-TGTTTTTCAATTT-TGT-TTTCAAAAAAATCAACTCATATTGC
* * *
147781478 AAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAA--ATTCTGT
127 GAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTATTCTGT
* *
147781529 TTTTCAAATTTTGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGAT
1 TTTTCAAATTTTGTCTTTCC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT
*
147781594 ACGCTGAGGTATTTTCAATTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCG
65 ACGCTGAGGTATTTTCAATTTTGTTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCG
*
147781659 AGAGGTGAGTTGAGCCTTAGGC-CACACGCCGAGGTATTTTCAATTGATT-T-T
128 AGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTATTTTCAATT-ATTCTGT
*** * * *
147781710 TTTTTTTATTTATG-CTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGG-T
1 TTTTCAAATTT-TGTCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT
** * * * *
147781772 CACATATCGAGGTATTTTCATAATCTGCTTTACAAATTTTGTTTT---AAAAATCAACTCATATT
65 -AC-GCT-GAGGTATTTTCA-ATTTTGTTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATT
* ** *
147781834 GCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
125 GCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATT
147781882 CCTGTTTTTA
Statistics
Matches: 300, Mismatches: 37, Indels: 32
0.81 0.10 0.09
Matches are distributed among these distances:
177 3 0.01
178 69 0.23
179 84 0.28
180 74 0.25
181 47 0.16
182 15 0.05
183 8 0.03
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (179 bp):
TTTTCAAATTTTGTCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATA
CGCTGAGGTATTTTCAATTTTGTTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTATTCTGT
Found at i:147783001 original size:17 final size:18
Alignment explanation
Indices: 147782979--147783027 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
147782969 CGGCCACCGT
147782979 GGGCGGTGGCCGGCGA-C
1 GGGCGGTGGCCGGCGATC
* *
147782996 GGGCGGCGGCCGACGATC
1 GGGCGGTGGCCGGCGATC
* *
147783014 GGCCGGTGACCGGC
1 GGGCGGTGGCCGGC
147783028 CCCCTTGGCC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.08, C:0.33, G:0.53, T:0.06
Consensus pattern (18 bp):
GGGCGGTGGCCGGCGATC
Found at i:147783638 original size:15 final size:17
Alignment explanation
Indices: 147783610--147783641 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
147783600 TTGTATATAT
147783610 TATATTTATATTATGTA
1 TATATTTATATTATGTA
147783627 TATATTT-T-TTATGTA
1 TATATTTATATTATGTA
147783642 CGTTTCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TATATTTATATTATGTA
Found at i:147785120 original size:11 final size:11
Alignment explanation
Indices: 147785104--147785129 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
147785094 TAAAAATTAT
147785104 ATACATTAACG
1 ATACATTAACG
147785115 ATACATTAACG
1 ATACATTAACG
147785126 ATAC
1 ATAC
147785130 GACATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (11 bp):
ATACATTAACG
Found at i:147785362 original size:2 final size:2
Alignment explanation
Indices: 147785355--147785397 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
147785345 TATTAAAAAG
147785355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
147785397 A
1 A
147785398 ATAGCGTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:147786923 original size:14 final size:15
Alignment explanation
Indices: 147786897--147786952 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
147786887 AATATAATAT
147786897 AATAAATATATT-AA
1 AATAAATATATTAAA
147786911 AATAAAGTA-ATTAAA
1 AATAAA-TATATTAAA
*
147786926 AATAAACTATGTATAAA
1 AATAAA-TATAT-TAAA
*
147786943 AATATATATA
1 AATAAATATA
147786953 CATATATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 9 0.26
15 12 0.35
16 4 0.12
17 9 0.26
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (15 bp):
AATAAATATATTAAA
Found at i:147787113 original size:39 final size:39
Alignment explanation
Indices: 147787059--147787154 Score: 165
Period size: 39 Copynumber: 2.4 Consensus size: 39
147787049 AATAATAATA
*
147787059 ATAATAATAATAATAATGATAATATGAATAATGGTCAAT
1 ATAATAATAATAATAATGATAATATGAATAATGGTAAAT
147787098 ATAATAATAATAATAATGATAATATGAATAATGGTAAAT
1 ATAATAATAATAATAATGATAATATGAATAATGGTAAAT
*
147787137 ATAATAATATTAAATAAT
1 ATAATAATAAT-AATAAT
147787155 ATTAAAAAGG
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
39 48 0.89
40 6 0.11
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.34
Consensus pattern (39 bp):
ATAATAATAATAATAATGATAATATGAATAATGGTAAAT
Found at i:147787140 original size:21 final size:20
Alignment explanation
Indices: 147787072--147787142 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 20
147787062 ATAATAATAA
147787072 TAATGATAATATGAATAATGG
1 TAAT-ATAATATGAATAATGG
147787093 TCAATATAATAAT-AATAA---
1 T-AATATAAT-ATGAATAATGG
147787111 TAATGATAATATGAATAATGG
1 TAAT-ATAATATGAATAATGG
147787132 TAAATATAATA
1 T-AATATAATA
147787143 ATATTAAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
17 5 0.12
18 11 0.26
21 18 0.43
22 8 0.19
ACGTcount: A:0.54, C:0.01, G:0.11, T:0.34
Consensus pattern (20 bp):
TAATATAATATGAATAATGG
Found at i:147787145 original size:3 final size:3
Alignment explanation
Indices: 147786985--147787121 Score: 111
Period size: 3 Copynumber: 45.0 Consensus size: 3
147786975 AATATTATAT
* *
147786985 ATA ATA ATA ATA CTA GA-A ATA ATA ATA ACTA GTA ATA ATA ATA CATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA A-TA ATA ATA ATA ATA -A-TA
* * * *
147787033 AAA ATA ATA AT- ATG TTA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
147787080 AT- ATGA ATA ATG GTCA AT- ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA AT-A ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
147787122 TGAATAATGG
Statistics
Matches: 107, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
2 7 0.07
3 91 0.85
4 7 0.07
5 2 0.02
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:147787820 original size:14 final size:15
Alignment explanation
Indices: 147787801--147787833 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
147787791 ATTCGAAGAG
147787801 AAAGAAAATAAAA-A
1 AAAGAAAATAAAATA
147787815 AAAG-AAATAAAATA
1 AAAGAAAATAAAATA
147787829 AAAGA
1 AAAGA
147787834 TGAAGTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAGAAAATAAAATA
Found at i:147789467 original size:24 final size:24
Alignment explanation
Indices: 147789440--147789485 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
147789430 TGCTACCATT
*
147789440 GCCATAAC-TTGTATAAGCAACAAA
1 GCCATAACATTGGA-AAGCAACAAA
*
147789464 GCCATGACATTGGAAAGCAACA
1 GCCATAACATTGGAAAGCAACA
147789486 TGACAGTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.17
Consensus pattern (24 bp):
GCCATAACATTGGAAAGCAACAAA
Found at i:147790530 original size:16 final size:16
Alignment explanation
Indices: 147790494--147790529 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
147790484 TAATTTTTAT
*
147790494 AAAAAGTTAAATAATA
1 AAAAAGTGAAATAATA
147790510 AAAAAGTGAAA-AATA
1 AAAAAGTGAAATAATA
147790525 AAAAA
1 AAAAA
147790530 ATAAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (16 bp):
AAAAAGTGAAATAATA
Found at i:147790980 original size:20 final size:19
Alignment explanation
Indices: 147790955--147791027 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 19
147790945 ATATTCCTTA
147790955 AAAATATATTTAACTTTTTT
1 AAAATATATTTAA-TTTTTT
*
147790975 AAAATATAAATTTTGGATTTTTT
1 AAAATAT--A-TTT-AATTTTTT
*
147790998 ATAAATATTTTTAATTTTTT
1 A-AAATATATTTAATTTTTT
147791018 AAAAT-TATTT
1 AAAATATATTT
147791028 TGATTTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
18 4 0.09
19 4 0.09
20 15 0.34
21 3 0.07
22 1 0.02
23 10 0.23
24 7 0.16
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (19 bp):
AAAATATATTTAATTTTTT
Found at i:147791011 original size:44 final size:39
Alignment explanation
Indices: 147790956--147791036 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 39
147790946 TATTCCTTAA
147790956 AAATATATTTAACTTTTTTAAAATATAAATTTTGGATTTTTTAT
1 AAATATATTTAA-TTTTTTAAAAT-T--ATTTT-GATTTTTTAT
*
147791000 AAATATTTTTAATTTTTTAAAATTATTTTGATTTTTT
1 AAATATATTTAATTTTTTAAAATTATTTTGATTTTTT
147791037 GTAATTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
39 8 0.22
40 5 0.14
42 1 0.03
43 11 0.31
44 11 0.31
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (39 bp):
AAATATATTTAATTTTTTAAAATTATTTTGATTTTTTAT
Found at i:147791035 original size:20 final size:19
Alignment explanation
Indices: 147790969--147791036 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 19
147790959 TATATTTAAC
147790969 TTTTTTAAAATATAAATTTTGGA
1 TTTTTTAAAAT-T--ATTTT-GA
*
147790992 TTTTTTATAAA-TATTTTTAA
1 TTTTTTA-AAATTA-TTTTGA
147791012 TTTTTTAAAATTATTTTGA
1 TTTTTTAAAATTATTTTGA
147791031 TTTTTT
1 TTTTTT
147791037 GTAATTTTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 14 0.35
20 11 0.28
21 4 0.10
22 1 0.03
23 7 0.17
24 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (19 bp):
TTTTTTAAAATTATTTTGA
Found at i:147791042 original size:19 final size:19
Alignment explanation
Indices: 147790984--147791042 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
147790974 TAAAATATAA
*
147790984 ATTTTGGATTTTTTATAAAT
1 ATTTT-GATTTTTTATAATT
* *
147791004 ATTTTTAATTTTTTAAAATT
1 A-TTTTGATTTTTTATAATT
*
147791024 ATTTTGATTTTTTGTAATT
1 ATTTTGATTTTTTATAATT
147791043 TTTGTTGAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 15 0.47
20 13 0.41
21 4 0.12
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (19 bp):
ATTTTGATTTTTTATAATT
Found at i:147792559 original size:20 final size:22
Alignment explanation
Indices: 147792534--147792580 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
147792524 TATATAAAAC
147792534 TATAATAAA-TAAAA-AAATTA
1 TATAATAAATTAAAATAAATTA
147792554 TATAATAAATTAAAATAAA-TA
1 TATAATAAATTAAAATAAATTA
147792575 TA-AATA
1 TATAATA
147792581 TATCTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 13 0.52
21 9 0.36
22 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
TATAATAAATTAAAATAAATTA
Found at i:147792571 original size:30 final size:29
Alignment explanation
Indices: 147792499--147792580 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
147792489 TAATATAATT
147792499 TAAATATTAAAA-AAATAAAAATAACTATA
1 TAAA-ATTAAAATAAATAAAAATAACTATA
* * *
147792528 TAAAACTATAATAAATAAAAA-AATTATA
1 TAAAATTAAAATAAATAAAAATAACTATA
*
147792556 TAATAAATTAAAATAAATATAAATA
1 T-A-AAATTAAAATAAATAAAAATA
147792581 TATCTTTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
28 12 0.28
29 14 0.33
30 16 0.37
31 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (29 bp):
TAAAATTAAAATAAATAAAAATAACTATA
Found at i:147793185 original size:10 final size:10
Alignment explanation
Indices: 147793170--147793208 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
147793160 AGCATTTGAA
147793170 CCTAATAAAT
1 CCTAATAAAT
147793180 CCTAATAAAT
1 CCTAATAAAT
**
147793190 -GAAATAAAT
1 CCTAATAAAT
147793199 CCTAATAAAT
1 CCTAATAAAT
147793209 GAACTCTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.54, C:0.15, G:0.03, T:0.28
Consensus pattern (10 bp):
CCTAATAAAT
Found at i:147793197 original size:19 final size:19
Alignment explanation
Indices: 147793173--147793211 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
147793163 ATTTGAACCT
147793173 AATAAATCCTAATAAATGA
1 AATAAATCCTAATAAATGA
147793192 AATAAATCCTAATAAATGA
1 AATAAATCCTAATAAATGA
147793211 A
1 A
147793212 CTCTTAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.26
Consensus pattern (19 bp):
AATAAATCCTAATAAATGA
Found at i:147796669 original size:19 final size:19
Alignment explanation
Indices: 147796645--147796681 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
147796635 TCATGACTGA
147796645 CATTCATT-TGACATTCATG
1 CATTCATTATG-CATTCATG
147796664 CATTCATTATGCATTCAT
1 CATTCATTATGCATTCAT
147796682 TCATACATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.43
Consensus pattern (19 bp):
CATTCATTATGCATTCATG
Found at i:147811202 original size:93 final size:93
Alignment explanation
Indices: 147811090--147811261 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
147811080 CGCCCATAAG
* *
147811090 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
147811155 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
147811183 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
147811248 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
147811262 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:147811258 original size:46 final size:46
Alignment explanation
Indices: 147811083--147811258 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
147811073 ATGTAACCGC
* * *
147811083 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
147811129 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
147811179 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
147811222 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
147811259 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:147814407 original size:40 final size:40
Alignment explanation
Indices: 147814351--147814556 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
147814341 AATGATACCT
* * *
147814351 GGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCC
* *
147814391 AGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
*
147814431 GGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
* *
147814471 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
* * * ** *
147814511 GGGTTAAGACCTGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
147814551 -GGCTAA
1 GGGCTAA
147814557 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 5 0.03
40 138 0.95
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
Found at i:147814493 original size:80 final size:79
Alignment explanation
Indices: 147814345--147814556 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 79
147814335 CAATTGAATG
* * * *
147814345 ATACCTGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCAGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCC-GGCTAAGACCCGAAGGC
147814409 ATTTGTGCGAGTTGCT
64 ATTTGTGCGAGTTGCT
* *
147814425 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCC-GGCTAAGACCCGAAGGCA
147814490 TTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGCT
* * * *
147814505 ATACCCGGGTTAAGACCTGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAA
147814557 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 6 0.05
80 110 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:147828464 original size:45 final size:46
Alignment explanation
Indices: 147828395--147828621 Score: 174
Period size: 48 Copynumber: 4.8 Consensus size: 46
147828385 TGGTATATGT
* *
147828395 GCTAATGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGAAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGAAAGA
* *
147828440 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-AGCCTTGAGATATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGA-CATTGAGA-A-A-GA
* * * * **
147828488 GCTAGTGTAAAACCTATCTGGGACATGGCAT-GACACTGATAGTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTG--AG-AAAGA
* * * * ***
147828536 GCCAGAGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGAGCTA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGA-GAAAGA
* *
147828583 GCCAATGTAAGACCATGTCTGGGACATGGCATCGACATT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACATT
147828622 TTATCCCTTG
Statistics
Matches: 145, Mismatches: 25, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
45 37 0.26
46 1 0.01
47 14 0.10
48 80 0.55
49 11 0.08
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGAAAGA
Found at i:147828510 original size:48 final size:45
Alignment explanation
Indices: 147828395--147828514 Score: 132
Period size: 45 Copynumber: 2.6 Consensus size: 45
147828385 TGGTATATGT
* * * * *
147828395 GCTAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAAGA
1 GCTAGTGTAAAACATATCTGGGACATGCATCAGCATTGAGAAAAA
* * *
147828440 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATATAA
1 GCTAGTGTAAAACATATCTGGGACATGCATCAGCATTGAGA-A-A-AA
*
147828488 GCTAGTGTAAAACCTATCTGGGACATG
1 GCTAGTGTAAAACATATCTGGGACATG
147828515 GCATGACACT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
45 38 0.58
46 1 0.02
47 1 0.02
48 25 0.38
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAAACATATCTGGGACATGCATCAGCATTGAGAAAAA
Found at i:147829577 original size:20 final size:20
Alignment explanation
Indices: 147829521--147829571 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
147829511 GAACATTATG
* *
147829521 AATTTTAATTAATTTTGTAGTT
1 AATTTTGATTAAATTTG--GTT
147829543 AATTTTGATTAAATTTGGTT
1 AATTTTGATTAAATTTGGTT
*
147829563 ATTTTTGAT
1 AATTTTGAT
147829572 AGAATTACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (20 bp):
AATTTTGATTAAATTTGGTT
Found at i:147840788 original size:68 final size:67
Alignment explanation
Indices: 147840695--147840820 Score: 243
Period size: 68 Copynumber: 1.9 Consensus size: 67
147840685 TGTTGTTCTG
147840695 AAGGAATTTTTCAAGGTGTTTCCGAGAGATTCTTTTCAAAATTTGCGCATTACTCGGGACAAAAT
1 AAGGAATTTTTCAAGGTGTTTCCGAGAGATTCTTTTCAAAATTTGCGCATTACTCGGGACAAAAT
147840760 GC
66 GC
147840762 AAGGAATTTTTCAAAGGTGTTTCCGAGAGATTCTTTTCAAAATTTGCGCATTACTCGGG
1 AAGGAATTTTTC-AAGGTGTTTCCGAGAGATTCTTTTCAAAATTTGCGCATTACTCGGG
147840821 GGCAATGAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
67 12 0.21
68 46 0.79
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (67 bp):
AAGGAATTTTTCAAGGTGTTTCCGAGAGATTCTTTTCAAAATTTGCGCATTACTCGGGACAAAAT
GC
Found at i:147844399 original size:40 final size:38
Alignment explanation
Indices: 147844354--147844516 Score: 161
Period size: 40 Copynumber: 4.2 Consensus size: 38
147844344 CGGAATATAA
147844354 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAT-AC-TAGCACAAATGCCTTCGGG-CTTAGC
* * *
147844394 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAAT-ACTAGCACAAATGCCTTCGGGCTTAGC
* *
147844433 CCGGATAT-A-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATACTAGCACAAATGCCTTCGGG-CTTAGC
* * * * *
147844470 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAA-TACTAGCACAAATGCCTTCGGGCTTAGC
147844509 CCGGATAT
1 CCGGATAT
147844517 CATTCAATTT
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
36 18 0.17
37 13 0.12
38 2 0.02
39 27 0.26
40 45 0.43
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (38 bp):
CCGGATATAATACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:147844473 original size:76 final size:76
Alignment explanation
Indices: 147844370--147844516 Score: 199
Period size: 76 Copynumber: 1.9 Consensus size: 76
147844360 ATAATCACGT
*
147844370 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
147844433 CCGGATATAACTA
64 CCGGATATAACTA
* * ** * *
147844446 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
147844511 GGATAT
66 GGATAT
147844517 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
75 3 0.05
76 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (76 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAACTA
Found at i:147852361 original size:40 final size:40
Alignment explanation
Indices: 147852316--147852482 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
147852306 CGGAATATAA
147852316 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
147852356 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
147852396 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
147852436 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
147852475 CCGGATAT
1 CCGGATAT
147852483 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:147852466 original size:80 final size:79
Alignment explanation
Indices: 147852316--147852482 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
147852306 CGGAATATAA
* *
147852316 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
147852381 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
147852396 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
147852458 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
147852475 CCGGATAT
1 CCGGATAT
147852483 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:147853331 original size:17 final size:19
Alignment explanation
Indices: 147853308--147853353 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
147853298 AAGAAGCATG
147853308 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
147853326 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
147853344 AATCATGCTC
1 AATCATGCTC
147853354 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:147869839 original size:20 final size:19
Alignment explanation
Indices: 147869816--147869861 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
147869806 ATAATGTTTA
147869816 TATTTTTAACATAAGTTAAT
1 TATTTTT-ACATAAGTTAAT
* * *
147869836 TATTTTTATATTATTTAAT
1 TATTTTTACATAAGTTAAT
147869855 TATTTTT
1 TATTTTT
147869862 TGACAAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TATTTTTACATAAGTTAAT
Found at i:147872313 original size:22 final size:23
Alignment explanation
Indices: 147872278--147872323 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
147872268 AAGAAAAACT
*
147872278 AGTAAATTAAAATAATAA-AAAA
1 AGTAAATTAAAATAAAAATAAAA
**
147872300 AGTAAATTGCAATAAAAATAAAA
1 AGTAAATTAAAATAAAAATAAAA
147872323 A
1 A
147872324 TGGCTAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (23 bp):
AGTAAATTAAAATAAAAATAAAA
Found at i:147874387 original size:38 final size:40
Alignment explanation
Indices: 147874320--147874400 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
147874310 ATTATAATAT
147874320 TGACCATAAATATATAATGTAAAATTTTCAAATGTTGATA
1 TGACCATAAATATATAATGTAAAATTTTCAAATGTTGATA
147874360 TGACCATAAATATATAATG-AAAA-TTTCAAATGTTGATA
1 TGACCATAAATATATAATGTAAAATTTTCAAATGTTGATA
147874398 TGA
1 TGA
147874401 GGTTCATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 18 0.44
39 4 0.10
40 19 0.46
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (40 bp):
TGACCATAAATATATAATGTAAAATTTTCAAATGTTGATA
Found at i:147874675 original size:30 final size:30
Alignment explanation
Indices: 147874639--147874699 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
147874629 ATAAATAAAG
*
147874639 TAGAGATCTACCTCTAATGATTATTAGAAT
1 TAGAGATCTACCTCTAATGACTATTAGAAT
*
147874669 TAGAGATCTACTTCTAATGACTATTAGAAT
1 TAGAGATCTACCTCTAATGACTATTAGAAT
147874699 T
1 T
147874700 TAAAATACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (30 bp):
TAGAGATCTACCTCTAATGACTATTAGAAT
Found at i:147877211 original size:22 final size:22
Alignment explanation
Indices: 147877185--147877243 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
147877175 ATTCTCAATC
* *
147877185 CTCTCTCAATTTTCTCTTAATT
1 CTCTCTCAATTTTCACATAATT
* *
147877207 TTCTCTCAATTCTCACATAATT
1 CTCTCTCAATTTTCACATAATT
*
147877229 CTCACTCAATTTTCA
1 CTCTCTCAATTTTCA
147877244 ATCCTCTTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (22 bp):
CTCTCTCAATTTTCACATAATT
Found at i:147877239 original size:11 final size:11
Alignment explanation
Indices: 147877162--147877239 Score: 61
Period size: 11 Copynumber: 7.0 Consensus size: 11
147877152 TCACTCTTAC
147877162 CTCTCTCTAATT
1 CTCTCTC-AATT
*
147877174 CAT-TCTCAATC
1 C-TCTCTCAATT
147877185 CTCTCTCAATT
1 CTCTCTCAATT
* *
147877196 TTCTCTTAATT
1 CTCTCTCAATT
*
147877207 TTCTCTCAATT
1 CTCTCTCAATT
*
147877218 CTCACAT-AATT
1 CTCTC-TCAATT
*
147877229 CTCACTCAATT
1 CTCTCTCAATT
147877240 TTCAATCCTC
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
10 2 0.04
11 46 0.84
12 6 0.11
13 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCTCAATT
Found at i:147877315 original size:25 final size:25
Alignment explanation
Indices: 147877261--147877317 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
147877251 TTCAACTTTC
*
147877261 ATTTTTTTATTAAAATTGTATTAAT
1 ATTTTTTAATTAAAATTGTATTAAT
* **
147877286 GTTTTTTAATTAATTTTGTATTACA-
1 ATTTTTTAATTAAAATTGTATTA-AT
147877311 ATTTTTT
1 ATTTTTT
147877318 TCGTATTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (25 bp):
ATTTTTTAATTAAAATTGTATTAAT
Found at i:147877920 original size:20 final size:21
Alignment explanation
Indices: 147877897--147877936 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
147877887 GGATTTAGTT
*
147877897 AATTTTTAATTT-ATTTTTTA
1 AATTTTCAATTTAATTTTTTA
*
147877917 AATTTTCATTTTAATTTTTT
1 AATTTTCAATTTAATTTTTT
147877937 TCTCTCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (21 bp):
AATTTTCAATTTAATTTTTTA
Found at i:147880728 original size:25 final size:25
Alignment explanation
Indices: 147880669--147880744 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
147880659 TATGGCTCTT
* * *
147880669 ATGAGCTTCCTGTTATACAGCCCGA
1 ATGAGCTTCCTGTTATATAGCTCAA
* * *
147880694 ATAAGTTTCCCGTTATATAGCTCAA
1 ATGAGCTTCCTGTTATATAGCTCAA
*
147880719 ATGAGCTTCCTGTTATATGGCTCAA
1 ATGAGCTTCCTGTTATATAGCTCAA
147880744 A
1 A
147880745 AGAGAGCTTC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATATAGCTCAA
Found at i:147887432 original size:8 final size:8
Alignment explanation
Indices: 147887421--147887469 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
147887411 TAATCTTTTA
147887421 AAAATTAT
1 AAAATTAT
147887429 AAAATTAT
1 AAAATTAT
*
147887437 AAAAATAT
1 AAAATTAT
*
147887445 -AAACTATT
1 AAAATTA-T
*
147887453 AAAATAAT
1 AAAATTAT
147887461 AAAATTAT
1 AAAATTAT
147887469 A
1 A
147887470 TTTTTACTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
7 5 0.15
8 25 0.74
9 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATTAT
Found at i:147895309 original size:29 final size:26
Alignment explanation
Indices: 147895241--147895318 Score: 70
Period size: 29 Copynumber: 2.9 Consensus size: 26
147895231 ATGTTTAACA
*
147895241 ACTTTTTATTTATTTA-TTT-ATTTT
1 ACTTTTTATTTATTTATTTTAATTGT
*
147895265 ACTTTTATCTTTATTTATTTTAATTAAGT
1 ACTTTT-TATTTATTTATTTTAATT--GT
*
147895294 ACTTTTTATTTCATTTTTCTTTAAT
1 ACTTTTTATTT-ATTTAT-TTTAAT
147895319 ATTATTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
24 6 0.14
25 9 0.21
26 3 0.07
27 3 0.07
28 4 0.09
29 12 0.28
30 6 0.14
ACGTcount: A:0.23, C:0.08, G:0.01, T:0.68
Consensus pattern (26 bp):
ACTTTTTATTTATTTATTTTAATTGT
Found at i:147897390 original size:13 final size:13
Alignment explanation
Indices: 147897372--147897398 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
147897362 GGAGTAATCG
147897372 CACACGGGCGTGT
1 CACACGGGCGTGT
147897385 CACACGGGCGTGT
1 CACACGGGCGTGT
147897398 C
1 C
147897399 CTGCCGAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:147901182 original size:40 final size:40
Alignment explanation
Indices: 147901127--147901247 Score: 224
Period size: 40 Copynumber: 3.0 Consensus size: 40
147901117 AAGTTTTTGT
* *
147901127 TCTTAAATGGAACCCTTCTTCAATCACAATGGCAACCATA
1 TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
147901167 TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
1 TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
147901207 TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
1 TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
147901247 T
1 T
147901248 TCGATTTTTG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.28
Consensus pattern (40 bp):
TCTTAAATAGAACCCTTCTTCAATCCCAATGGCAACCATA
Found at i:147901652 original size:2 final size:2
Alignment explanation
Indices: 147901645--147901677 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
147901635 TATAGATACT
147901645 TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
147901678 CACTGAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:147901659 original size:21 final size:21
Alignment explanation
Indices: 147901634--147901676 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
147901624 ATTAATTGTG
147901634 TTATAGATACT-TATATATATA
1 TTATAGATA-TATATATATATA
*
147901655 TTATATATATATATATATATA
1 TTATAGATATATATATATATA
147901676 T
1 T
147901677 ACACTGAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTATAGATATATATATATATA
Found at i:147901955 original size:20 final size:20
Alignment explanation
Indices: 147901932--147902003 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
147901922 TGTGCACTTA
*
147901932 TCTTGTTAGCACTATGGTGC
1 TCTTGATAGCACTATGGTGC
* * * *
147901952 TCTTGATAGTACTTTTGTAC
1 TCTTGATAGCACTATGGTGC
* * *
147901972 TCATGTTAGCACTACGGTGC
1 TCTTGATAGCACTATGGTGC
147901992 TCTTGATAGCAC
1 TCTTGATAGCAC
147902004 ATTTGTGCCC
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (20 bp):
TCTTGATAGCACTATGGTGC
Found at i:147903923 original size:45 final size:47
Alignment explanation
Indices: 147903873--147903975 Score: 129
Period size: 45 Copynumber: 2.2 Consensus size: 47
147903863 ACAATCGATA
* * *
147903873 AGTACCTATACCATAGCCCAT-AGCAAGTCAAGGTAACTTATC-CTG
1 AGTACCTATACCATAGCCCATAACCAAATCAAGGTAACTCATCTCTG
* * *
147903918 AGTACCTATACCATGGCCCGTAACCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATAGCCCATAACCAAATCAAGGTAACTCATCTCTG
*
147903965 AATACCTATAC
1 AGTACCTATAC
147903976 TATGTGTAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
45 19 0.39
46 17 0.35
47 13 0.27
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (47 bp):
AGTACCTATACCATAGCCCATAACCAAATCAAGGTAACTCATCTCTG
Found at i:147905419 original size:94 final size:92
Alignment explanation
Indices: 147905260--147905431 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 92
147905250 GGATGGTTGA
**
147905260 GCATCCGAACTCGTTGAGTTGAGTCCGATTCACTTATGGATACAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGATTCACTTATGGATACAAATACCCGAACTCGTTGAGTT
147905325 GAGTCCGAGTTCGAGAGATGTAACTAG
66 GAGTCCGAGTTCGAGAGATGTAACTAG
* * *
147905352 GCATCCGAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGGATGC-GATCACCCGAGCTCGTTGA
1 GCATCCGAACTCGTTGAG-TTGAGTCCGA-TTCACTTATGGATACAAAT-ACCCGAACTCGTTGA
147905416 GTTGAGTCCGAGTTCG
63 GTTGAGTCCGAGTTCG
147905432 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 18 0.25
93 12 0.17
94 42 0.58
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGATTCACTTATGGATACAAATACCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTAG
Done.