Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 479 of 770
Found at i:147909716 original size:40 final size:40
Alignment explanation
Indices: 147909661--147909824 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
147909651 TGAATGATAC
* * *
147909661 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
147909701 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
147909741 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
147909781 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
147909821 CCGG
1 CCGG
147909825 TTGAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:147914720 original size:40 final size:39
Alignment explanation
Indices: 147914675--147914882 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
147914665 CGGAATATAA
*
147914675 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
147914715 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
147914755 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
147914795 CCGGATGTAGTCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * * *
147914835 CCGGATACAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
147914875 CCGGATAT
1 CCGGATAT
147914883 CATTCAATTG
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:147914815 original size:80 final size:80
Alignment explanation
Indices: 147914675--147914881 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
147914665 CGGAATATAA
* *
147914675 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
147914740 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
147914755 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCG-CTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-A-ACGACTAGCACAAA
*
147914818 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
* ** ** * *
147914835 CCGGATACAATTAC-TAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACAT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
147914882 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:147918734 original size:27 final size:28
Alignment explanation
Indices: 147918673--147918741 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
147918663 AAATTTGTAC
* *
147918673 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
147918701 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
147918728 GGCACTAAGTGTGC
1 AGCACTAAGTGTGC
147918742 ATGATCGAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:147924329 original size:40 final size:40
Alignment explanation
Indices: 147924274--147924437 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
147924264 TGAATGATAC
* * *
147924274 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
147924314 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
147924354 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
147924394 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
147924434 CCGG
1 CCGG
147924438 TTGAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:147932004 original size:28 final size:29
Alignment explanation
Indices: 147931960--147932054 Score: 81
Period size: 29 Copynumber: 3.3 Consensus size: 29
147931950 GTGCGGACAA
* *
147931960 TAAGTGTTCACGGTTG-AGGGAATGGCAC
1 TAAGTGTGCACGGTTGAAAGGAATGGCAC
* *
147931988 TAAGTGTGCA-GGCTTGAAATGCATGGCAC
1 TAAGTGTGCACGG-TTGAAAGGAATGGCAC
* *
147932017 TAAGTGTG--CGAGTTTAAAGTACATGGCAC
1 TAAGTGTGCACG-GTTGAAAGGA-ATGGCAC
147932046 TAAGTGTGC
1 TAAGTGTGC
147932055 GTGGTTGATT
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
27 2 0.04
28 18 0.34
29 33 0.62
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TAAGTGTGCACGGTTGAAAGGAATGGCAC
Found at i:147932020 original size:29 final size:29
Alignment explanation
Indices: 147931981--147932055 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
147931971 GGTTGAGGGA
*
147931981 ATGGCACTAAGTGTGC-AGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGA-G-TTGAAAGTAC
*
147932010 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
147932039 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
147932056 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 5 0.12
29 36 0.86
30 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:147941337 original size:40 final size:40
Alignment explanation
Indices: 147941238--147941432 Score: 189
Period size: 40 Copynumber: 4.8 Consensus size: 40
147941228 TTCGAATGGT
* * * *
147941238 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
147941279 ATCCGG-GTCAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
147941319 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
** * *
147941359 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * *
147941400 A-CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGT
147941433 CGCTATATCC
Statistics
Matches: 129, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 99 0.77
41 29 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:147941443 original size:80 final size:80
Alignment explanation
Indices: 147941238--147941444 Score: 242
Period size: 80 Copynumber: 2.6 Consensus size: 80
147941228 TTCGAATGGT
* *
147941238 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTAAATCCGGGTCAATTCCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGC-GAGTCG-CTAAATCCGGGTCAAGTCCCGAAGGCA
*
147941302 TTTGTGCGAGTTACTAA
64 TTTGTGCGAGCTACTAA
* * * *
147941319 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTC-CCAAATCCGGGTTAAGTCCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCGAG-TCGCTAAATCCGGGTCAAGTCCCGAAGGCA
*
147941382 TTTGTGCGAGCTATTATA
64 TTTGTGCGAGCTACTA-A
* * *
147941400 A-CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGTCGCTATATCCGG
1 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTCGCTAAATCCGG
147941445 ATAAAATCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
79 3 0.03
80 73 0.69
81 29 0.27
82 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTCGCTAAATCCGGGTCAAGTCCCGAAGGCATT
TGTGCGAGCTACTAA
Found at i:147945219 original size:49 final size:49
Alignment explanation
Indices: 147945130--147945598 Score: 767
Period size: 49 Copynumber: 9.5 Consensus size: 49
147945120 ATTCACATTA
* * * * *
147945130 GCCATTCGGCTTTACCACATATATATATATACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACAT--TTTCACATTCATCACATCG
147945181 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
*
147945230 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
147945279 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
* *
147945328 GCCATTAGGCCTTACCACATATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCATCACATCG
* * *
147945379 GCCATTAGGCCTTAGCACATATGTATACATTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
* *
147945428 GCCATTAGGCCTTATCACATATGTATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
*
147945477 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
*
147945526 GCCATTAGGCCTTATCACATATGTATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
147945575 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
147945599 TATTATGTAC
Statistics
Matches: 396, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
49 323 0.82
51 73 0.18
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
Found at i:147945352 original size:198 final size:198
Alignment explanation
Indices: 147945130--147945598 Score: 816
Period size: 198 Copynumber: 2.4 Consensus size: 198
147945120 ATTCACATTA
* * *
147945130 GCCATTCGGCTTTACCACATATATATATATACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTACCACATATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA
147945195 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
66 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
147945260 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
131 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
147945325 TCG
196 TCG
*
147945328 GCCATTAGGCCTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTACCACATATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * * *
147945393 GCACATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATGTATACAC
66 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
147945458 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
131 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
147945523 TCG
196 TCG
* * *
147945526 GCCATTAGGCCTTATCACATATGTATACAT--TTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTACCACATATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA
147945589 TCACATATAT
66 TCACATATAT
147945599 TATTATGTAC
Statistics
Matches: 256, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
196 41 0.16
198 215 0.84
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (198 bp):
GCCATTAGGCCTTACCACATATATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCG
Found at i:147953906 original size:40 final size:40
Alignment explanation
Indices: 147953851--147954014 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
147953841 TGAATGATAC
* * *
147953851 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
147953891 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
147953931 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
147953971 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
147954011 CCGG
1 CCGG
147954015 TTGAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:147961063 original size:40 final size:40
Alignment explanation
Indices: 147960961--147961144 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
147960951 AAATTGAATG
* * * * *
147960961 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
147961001 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
147961041 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
147961081 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
147961121 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
147961145 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:147969093 original size:39 final size:40
Alignment explanation
Indices: 147969035--147969135 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
147969025 AAATTGAATG
* *
147969035 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
147969074 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
147969114 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
147969136 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:147969128 original size:40 final size:40
Alignment explanation
Indices: 147969035--147969217 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
147969025 AAATTGAATG
* * * * *
147969035 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
147969074 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
147969114 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
147969154 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
147969194 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
147969218 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:147973128 original size:80 final size:80
Alignment explanation
Indices: 147973044--147973192 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
147973034 TATGGTAACC
* * * *
147973044 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
147973108 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
147973124 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
147973189 CCGG
66 CCGG
147973193 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:147973134 original size:40 final size:38
Alignment explanation
Indices: 147973085--147973192 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
147973075 ATCACGATTT
*
147973085 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
147973125 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
147973165 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
147973193 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:147981245 original size:80 final size:80
Alignment explanation
Indices: 147981161--147981309 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
147981151 TATGGTAACC
* * * *
147981161 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
147981225 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
147981241 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
147981306 CCGG
66 CCGG
147981310 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:147981251 original size:40 final size:38
Alignment explanation
Indices: 147981202--147981309 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
147981192 ATCACGATTT
*
147981202 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
147981242 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
147981282 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
147981310 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:147987011 original size:70 final size:71
Alignment explanation
Indices: 147986924--147987086 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
147986914 CGATTTGTCT
147986924 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
147986988 CTTTCA
66 CTTTCA
147986994 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
147987059 CTTTCA
66 CTTTCA
147987065 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
147987087 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 27 0.29
71 65 0.71
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:147987124 original size:71 final size:70
Alignment explanation
Indices: 147986924--147987120 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
147986914 CGATTTGTCT
* * *
147986924 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
147986988 CTTTCA
65 CTTTCA
* * * *
147986994 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
147987059 CTTTCA
65 CTTTCA
* *
147987065 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
147987121 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 26 0.22
71 69 0.58
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:147992020 original size:40 final size:40
Alignment explanation
Indices: 147991946--147992091 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
147991936 CCGCACCAAG
* * * * * *
147991946 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
147991986 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
147992026 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
147992066 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
147992092 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:147992106 original size:40 final size:40
Alignment explanation
Indices: 147991978--147992129 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
147991968 ATCACGATTT
* * * **
147991978 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
147992018 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
147992058 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
147992098 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
147992130 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:147997219 original size:47 final size:47
Alignment explanation
Indices: 147997160--147997775 Score: 741
Period size: 47 Copynumber: 13.4 Consensus size: 47
147997150 GATGTACAAG
*
147997160 GTGTATATATGTGATAAGGCCGACTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997207 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997254 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
147997301 GTGTGTATATGTGAGAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997348 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997395 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997442 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
**
147997489 GTGTATATA--TG-T--GGCCG-ATGTGATGAATGTGA--AA-GTGTATATA
1 GTGTATATATGTGATAAGGCCGAATG-G-CCAATGTGATGAATGTG-A-A-A
* * *
147997532 -TGTGATA-AGGTCGA-ATGGCC-AAT-G--T----GATGAATGTGAAA
1 GTGT-ATATATGT-GATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
147997570 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
147997617 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * * *
147997664 CTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
147997711 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATATGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
147997758 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
147997776 TCCCGAAGGG
Statistics
Matches: 506, Mismatches: 36, Indels: 54
0.85 0.06 0.09
Matches are distributed among these distances:
38 8 0.02
39 12 0.02
40 8 0.02
41 10 0.02
42 10 0.02
43 10 0.02
44 2 0.00
45 4 0.01
47 442 0.87
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:147997243 original size:22 final size:22
Alignment explanation
Indices: 147997215--147997290 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
147997205 AAGTGTGTAT
147997215 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** *
147997237 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCTAA-TG-GCCA
147997261 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
147997284 ATGTGAT
1 ATGTGAT
147997291 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:147997326 original size:94 final size:94
Alignment explanation
Indices: 147997160--147997775 Score: 916
Period size: 94 Copynumber: 6.7 Consensus size: 94
147997150 GATGTACAAG
* *
147997160 GTGTATATATGTGATAAGGCCGACTGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
147997225 GCCTAATGGCCAATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
* * * *
147997254 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGAGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
147997319 GCCTAATGGCCAATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
* *
147997348 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
147997413 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
* *
147997442 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TG-T--G
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
147997502 GCC-----G---ATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
*
147997523 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * *
147997588 GCCGAGTGGCCAACGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
* *
147997617 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
* * * *
147997682 ACCTAATGGCCGATGTGATGGATGTGAAG
66 GCCTAATGGCCAATGTGATGAATGTGAAA
* * * *
147997711 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATATGAAAGTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
147997776 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 31, Indels: 26
0.89 0.06 0.05
Matches are distributed among these distances:
81 70 0.15
83 2 0.00
84 2 0.00
86 4 0.01
89 4 0.01
91 2 0.00
92 2 0.00
94 392 0.82
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:147997419 original size:141 final size:141
Alignment explanation
Indices: 147997160--147997775 Score: 898
Period size: 141 Copynumber: 4.5 Consensus size: 141
147997150 GATGTACAAG
*
147997160 GTGTATATATGTGATAAGGCCGACTGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
* *
147997225 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
147997290 TGAATGTGAAA
131 TGAATGTGAAA
* * *
147997301 GTGTGTATATGTGAGAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
* *
147997366 GCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
147997431 TGAATGTGAAA
131 TGAATGTGAAA
* *
147997442 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATA--T-AT---
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
* * *
147997499 ---G--TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
147997559 TGAATGTGAAA
131 TGAATGTGAAA
* * *
147997570 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
* * * *
147997635 GCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGATGTGA
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
* *
147997700 TGGATGTGAAG
131 TGAATGTGAAA
* * * * *
147997711 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATATGAAAGTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
147997776 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 34, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
128 110 0.26
130 7 0.02
132 1 0.00
133 2 0.00
136 2 0.00
137 1 0.00
139 8 0.02
141 297 0.69
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (141 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGA
TGAATGTGAAA
Found at i:147997500 original size:16 final size:16
Alignment explanation
Indices: 147997481--147997536 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
147997471 GATGTGATGA
147997481 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
***
147997497 ATGTGGCCGATGTGATGA-
1 ATGTGAAAG-TGT-AT-AT
147997515 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
147997531 ATGTGA
1 ATGTGA
147997537 TAAGGTCGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
15 1 0.03
16 14 0.47
17 6 0.20
18 8 0.27
19 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:147997505 original size:34 final size:34
Alignment explanation
Indices: 147997466--147997535 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
147997456 TAAGGCCTAA
147997466 TGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATG
147997500 TGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATG
147997534 TG
1 TG
147997536 ATAAGGTCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.33
Consensus pattern (34 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:147997567 original size:222 final size:222
Alignment explanation
Indices: 147997278--147997723 Score: 748
Period size: 222 Copynumber: 2.0 Consensus size: 222
147997268 TAAGGCCTAA
* *
147997278 TGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGAGAAGGCCTAATGGCCAATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATG
* * *
147997343 TGAAAGTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
* * * * *
147997408 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
131 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
147997473 TGTGATGAATGTGAAAGTGTATATATG
196 TGTGATGAATGTGAAAGTGTATATATG
* * *
147997500 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATG
*
147997565 TGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
66 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
147997630 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
131 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
* *
147997695 TGTGATGGATGTGAAGGTGTATATATG
196 TGTGATGAATGTGAAAGTGTATATATG
147997722 TG
1 TG
147997724 ATAAGGTCGA
Statistics
Matches: 208, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
222 208 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (222 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATG
Found at i:147997717 original size:269 final size:269
Alignment explanation
Indices: 147997231--147997770 Score: 882
Period size: 269 Copynumber: 2.0 Consensus size: 269
147997221 TAAGGCCTAA
* *
147997231 TGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* * * *
147997296 TGAAAGTGTGTATATGTGAGAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTG
66 TGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
* * * *
147997361 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
131 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
* * *
147997426 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
196 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGT
*
147997491 GTATATATG
261 GTATAAATG
* *
147997500 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
* *
147997565 TGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
66 TGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
147997630 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
131 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
* * * *
147997695 TGTGATGGATGTGAAGGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGGATATGAAAGT
196 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGT
147997760 GTATAAATG
261 GTATAAATG
147997769 TG
1 TG
147997771 ATAAGTCCCG
Statistics
Matches: 249, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
269 249 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (269 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
TGAAAGTGTATATATGTGAGAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCGAATGGCCAATGTGATGAATGTGAAACTGTATATATGAGATAAGACCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGT
GTATAAATG
Found at i:148000278 original size:29 final size:29
Alignment explanation
Indices: 148000245--148000318 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
148000235 GTGACGAGAT
148000245 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
148000274 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
148000303 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
148000319 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:148000334 original size:29 final size:29
Alignment explanation
Indices: 148000302--148000377 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
148000292 CTGGAAATAT
* *
148000302 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
148000331 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
148000360 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
148000378 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:148000345 original size:58 final size:58
Alignment explanation
Indices: 148000245--148000377 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
148000235 GTGACGAGAT
* * * * * *
148000245 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
148000303 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
148000361 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
148000378 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:148008153 original size:29 final size:29
Alignment explanation
Indices: 148008120--148008193 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
148008110 GTGACGAGAT
148008120 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
148008149 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
148008178 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
148008194 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:148008209 original size:29 final size:29
Alignment explanation
Indices: 148008177--148008252 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
148008167 CTGGAAATAT
* *
148008177 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
148008206 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
148008235 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
148008253 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:148008220 original size:58 final size:58
Alignment explanation
Indices: 148008120--148008252 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
148008110 GTGACGAGAT
* * * * * *
148008120 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
148008178 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
148008236 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
148008253 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:148011987 original size:46 final size:46
Alignment explanation
Indices: 148011937--148012112 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
148011927 TATTTGGGCA
148011937 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
148011983 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
148012030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
148012076 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
148012113 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:148012092 original size:93 final size:93
Alignment explanation
Indices: 148011933--148012104 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
148011923 TGGATATTTG
* *
148011933 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
148011998 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
148012026 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
148012091 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
148012105 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:148015044 original size:15 final size:15
Alignment explanation
Indices: 148015024--148015092 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
148015014 GTATCTTGGG
148015024 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
148015039 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
148015054 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
148015069 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
148015084 TTTCTTTAT
1 TTTCTTTAT
148015093 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:148015093 original size:30 final size:30
Alignment explanation
Indices: 148015015--148015102 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
148015005 CATAGTATCG
* * * *
148015015 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
148015045 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
148015075 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
148015103 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:148017533 original size:46 final size:46
Alignment explanation
Indices: 148017480--148017655 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
148017470 TATTTGGGCA
148017480 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
148017526 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
148017573 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
148017619 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
148017656 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:148017635 original size:93 final size:93
Alignment explanation
Indices: 148017476--148017647 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
148017466 GGGATATTTG
* *
148017476 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
148017541 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
148017569 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
148017634 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
148017648 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:148019332 original size:33 final size:33
Alignment explanation
Indices: 148019277--148019343 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
148019267 CTGGCTGTGT
148019277 CAGTACAAGTGCTTTAACCAAAGTCGACTTTAG
1 CAGTACAAGTGCTTTAACCAAAGTCGACTTTAG
* *
148019310 CAGTACAGGTG-TTTCAATCAAAGTCGACTTTAG
1 CAGTACAAGTGCTTT-AACCAAAGTCGACTTTAG
148019343 C
1 C
148019344 TTCTGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (33 bp):
CAGTACAAGTGCTTTAACCAAAGTCGACTTTAG
Found at i:148026786 original size:40 final size:39
Alignment explanation
Indices: 148026741--148026948 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
148026731 CGGAATACAA
*
148026741 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
148026781 CCGGATAGAACGACTTGCACAAATGCCTACGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
148026821 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
148026861 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
148026901 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
148026941 CCGGATAT
1 CCGGATAT
148026949 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:148026881 original size:80 final size:81
Alignment explanation
Indices: 148026741--148026946 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 81
148026731 CGGAATACAA
* * *
148026741 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
148026805 -GCCTACGGGTATTAGC
65 GGCCTACGGGTATTAAC
* *
148026821 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
* *
148026884 GGCCTTCGGGTCTTAAC
65 GGCCTACGGGTATTAAC
** * ** * *
148026901 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
148026947 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 100 0.93
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTACGGGTATTAAC
Found at i:148037632 original size:48 final size:48
Alignment explanation
Indices: 148037459--148037633 Score: 181
Period size: 48 Copynumber: 3.6 Consensus size: 48
148037449 AAAAAAGTAT
* * ** * * *
148037459 CAATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCACCGC
1 CAATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCAC
* * * ***
148037507 CGATGCCATGTCCCAAACATGGTCTTACATAGGCACATATATCATTGT
1 CAATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCAC
* *
148037555 CGATGCAATGTCCCAGACATGGTCTTACACAGGCACATATATCATCAC
1 CAATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCAC
* *
148037603 CAATGCCATGTACCAGACATGGTCCTACACA
1 CAATGCCATGTCCCAGACATGGTCTTACACA
148037634 AAATCTTATT
Statistics
Matches: 106, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
47 2 0.02
48 104 0.98
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCAC
Found at i:148040977 original size:49 final size:50
Alignment explanation
Indices: 148040918--148041090 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 50
148040908 ATTAAAGTCA
* * * * * *
148040918 ATGCCATGTCCCAGATAGATCTTACATTGACTTTCATATATCGAG-GCCG
1 ATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGAGTGTCG
*
148040967 ATGTCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCG-GTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGAGTGTCG
* *
148041016 ATGCCATGTCCTAGACAGGTCTTACATTGGCTCTCATCTATC-AGTATCG
1 ATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGAGTGTCG
* *
148041065 ACGCCATGTCCCAGATAGGTCTTACA
1 ATGCCATGTCCCAGACAGGTCTTACA
148041091 CTAGCTTGTA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 1 0.01
49 108 0.99
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.31
Consensus pattern (50 bp):
ATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCGAGTGTCG
Found at i:148041878 original size:20 final size:18
Alignment explanation
Indices: 148041841--148041891 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
148041831 CTATAGCAAC
148041841 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
148041858 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
148041878 TTACAACTTTACAA
1 TCACAA-TTTACAA
148041892 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:148043889 original size:47 final size:47
Alignment explanation
Indices: 148043818--148044132 Score: 504
Period size: 47 Copynumber: 6.7 Consensus size: 47
148043808 CCTTTCGGGA
* * * * * *
148043818 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
148043865 CCTATCACATATATACGCTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
148043912 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
148043959 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
148044006 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
148044053 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
148044100 CTTATCACATATATATACACATTCACATTCATC
1 CTTATCAC--ATATATACACTTTCACATTCATC
148044133 GCATAAAATC
Statistics
Matches: 251, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
47 229 0.91
49 22 0.09
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:148044180 original size:141 final size:137
Alignment explanation
Indices: 148043868--148044165 Score: 395
Period size: 141 Copynumber: 2.1 Consensus size: 137
148043858 ACTCGGCCCT
* **
148043868 ATCACATATATACGCTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
1 ATCACAAATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
*
148043933 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACAT----
* * *
148043998 CATTAGGCCTT
127 CATAAAGCCTA
* * *
148044009 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
1 ATCACAAATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
*
148044074 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACATTCACATTCATCGCAT-A
66 CACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACATTCACATTCATCACATCA
*
148044138 -AAATCCTAA
129 TAAAGCCT-A
*
148044147 ATCA-AAATATAAATTTTCA
1 ATCACAAATATAAACTTTCA
148044166 TGTATTCACA
Statistics
Matches: 143, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
137 16 0.11
138 5 0.03
141 97 0.68
143 25 0.17
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (137 bp):
ATCACAAATATAAACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCATA
AAGCCTA
Found at i:148049257 original size:27 final size:28
Alignment explanation
Indices: 148049223--148049291 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
148049213 TACTCGATCA
* *
148049223 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
148049250 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
148049278 CGCACACTTAGTGC
1 CGCACACTTAGTGC
148049292 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:148050661 original size:18 final size:18
Alignment explanation
Indices: 148050629--148050666 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
148050619 TCCACACCCA
148050629 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
148050649 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
148050666 T
1 T
148050667 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:148057083 original size:80 final size:80
Alignment explanation
Indices: 148056999--148057147 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
148056989 TATGGTAACC
* * * *
148056999 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
148057063 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
148057079 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
148057144 CCGG
66 CCGG
148057148 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:148057089 original size:40 final size:38
Alignment explanation
Indices: 148057040--148057147 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
148057030 ATCACGATTT
*
148057040 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
148057080 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
148057120 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
148057148 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:148063571 original size:40 final size:38
Alignment explanation
Indices: 148063464--148063573 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 38
148063454 TATCACGATT
*
148063464 TGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* *
148063503 TGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
*
148063542 TAGCACAATTGCCTTCGGGTCTTAACCCGGAT
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGAT
148063574 ATAATTTCCA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 38 0.59
40 26 0.41
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (38 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
Found at i:148071591 original size:40 final size:40
Alignment explanation
Indices: 148071547--148071657 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 40
148071537 ATATCACGAT
*
148071547 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* * *
148071587 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* * *
148071627 TAGCACAATTGCCTTCGGGTCTTAACCCGGA
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGA
148071658 AGAGGTTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
Found at i:148072825 original size:29 final size:29
Alignment explanation
Indices: 148072763--148072865 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
148072753 GTGACGAGAT
* * *
148072763 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
148072792 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
148072821 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
148072850 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
148072866 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:148084302 original size:29 final size:29
Alignment explanation
Indices: 148084240--148084342 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
148084230 GTGACGAGAT
* * *
148084240 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
148084269 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
148084298 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
148084327 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
148084343 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:148097268 original size:14 final size:15
Alignment explanation
Indices: 148097249--148097278 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
148097239 ATATTTAACT
148097249 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
148097263 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
148097278 T
1 T
148097279 TTTGATAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:148105932 original size:23 final size:23
Alignment explanation
Indices: 148105897--148106020 Score: 93
Period size: 22 Copynumber: 5.6 Consensus size: 23
148105887 TGAGCTGATG
148105897 AACAGTAAGCTCTAATGAGCTAA
1 AACAGTAAGCTCTAATGAGCTAA
*
148105920 AAC-GATAAGCTCT-ATCGAGCT-G
1 AACAG-TAAGCTCTAAT-GAGCTAA
*
148105942 AACAGTAAGCTCTATTGAGCT-A
1 AACAGTAAGCTCTAATGAGCTAA
* * *
148105964 AATAGTAAACTC--ATAGAGCTGA
1 AACAGTAAGCTCTAAT-GAGCTAA
* *
148105986 AACGGTAAGC-C-AATGTGCTAAA
1 AACAGTAAGCTCTAATGAGCT-AA
148106008 AACAGTAAGCTCT
1 AACAGTAAGCTCT
148106021 TACAAGCTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
20 1 0.01
21 10 0.13
22 49 0.62
23 19 0.24
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTAATGAGCTAA
Found at i:148115169 original size:38 final size:39
Alignment explanation
Indices: 148115052--148115280 Score: 348
Period size: 38 Copynumber: 6.1 Consensus size: 39
148115042 ATGCAAGACA
148115052 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
148115091 TGGAAATGTATCC-GGCTAAAGT-CCGCA-GCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
* *
148115127 TGGAAATATATCCGGGCCAAAGT-CCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
148115165 TGGAAATGTAT-CGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
*
148115203 TGGAAATGTATCCGGGC-CAAGT--CGCAGCGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAG-GCTTCGTGC
* *
148115240 TGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
148115279 TG
1 TG
148115281 ATAATATAAT
Statistics
Matches: 174, Mismatches: 8, Indels: 16
0.88 0.04 0.08
Matches are distributed among these distances:
36 26 0.15
37 53 0.30
38 62 0.36
39 28 0.16
40 5 0.03
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
Found at i:148118836 original size:123 final size:123
Alignment explanation
Indices: 148118617--148118955 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
148118607 GAATTATGTG
148118617 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
148118682 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
148118740 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
148118805 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * * *
148118863 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTATGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
148118928 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
148118956 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:148118979 original size:40 final size:40
Alignment explanation
Indices: 148118924--148119167 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
148118914 TGAATGATAC
* * * * **
148118924 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
148118964 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
148119004 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
148119044 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
148119084 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
148119124 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
148119164 CCGG
1 CCGG
148119168 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:148123449 original size:47 final size:47
Alignment explanation
Indices: 148123371--148123828 Score: 607
Period size: 47 Copynumber: 9.7 Consensus size: 47
148123361 CCCTTCGGAA
* * * * *
148123371 CTTATCACATTTATACACTTTCACATCCATCACGTCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
148123418 CCTACCACATATATACACTTTCAAATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
148123465 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
148123512 CTTATCACATATATACGCTTCCACATTCATCACATGGGCAATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
148123559 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
148123606 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
148123653 CTTATCACACATATGCA-TGCTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
148123700 CTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
**
148123747 CTTATCACATATATGTA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
148123794 CTTATCTCATATATACTCATTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
148123829 AAAATCCTAA
Statistics
Matches: 366, Mismatches: 43, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 365 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:148123708 original size:22 final size:22
Alignment explanation
Indices: 148123681--148123756 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
148123671 GCTCACATTC
148123681 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
148123703 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
148123727 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
148123750 ATCACAT
1 ATCACAT
148123757 ATATGTATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:148126356 original size:22 final size:20
Alignment explanation
Indices: 148126316--148126356 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
148126306 AGTCCTATTA
*
148126316 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
148126336 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
148126357 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:148130412 original size:21 final size:21
Alignment explanation
Indices: 148130386--148130429 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
148130376 GGGTTTTAGT
148130386 TCATACTAATGAAAGAACACA
1 TCATACTAATGAAAGAACACA
148130407 TCATACTAATGAAAGAACACA
1 TCATACTAATGAAAGAACACA
148130428 TC
1 TC
148130430 TCAAAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.20, G:0.09, T:0.20
Consensus pattern (21 bp):
TCATACTAATGAAAGAACACA
Found at i:148134377 original size:41 final size:41
Alignment explanation
Indices: 148134332--148134449 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
148134322 TGAAAGATAA
148134332 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
148134373 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148134403 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148134444 ATGTAG
1 ATGTAG
148134450 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:148134388 original size:71 final size:71
Alignment explanation
Indices: 148134300--148134463 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
148134290 GAGATGTATC
148134300 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148134365 AGGACA
66 AGGACA
148134371 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148134436 AGGACA
66 AGGACA
148134442 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
148134464 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:148144434 original size:29 final size:29
Alignment explanation
Indices: 148144402--148144536 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
148144392 ATACCCTCCG
** * *
148144402 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
148144431 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
148144460 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
148144489 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
148144518 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
148144537 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:148144469 original size:58 final size:58
Alignment explanation
Indices: 148144348--148144537 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
148144338 TACTCGATTT
* * * *** *
148144348 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
148144406 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
148144464 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
148144522 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
148144538 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:148152402 original size:29 final size:29
Alignment explanation
Indices: 148152370--148152504 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
148152360 ATACCCTCCG
** * *
148152370 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
148152399 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
148152428 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
148152457 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
148152486 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
148152505 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:148152437 original size:58 final size:58
Alignment explanation
Indices: 148152316--148152505 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
148152306 TACTCGATTT
* * * *** *
148152316 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
148152374 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
148152432 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
148152490 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
148152506 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:148156863 original size:27 final size:27
Alignment explanation
Indices: 148156797--148156866 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
148156787 GTCCTGACAG
* *
148156797 ACCCCATGTTTAATGTCTCGACAAACT
1 ACCCCATGTTTAGTGTCTAGACAAACT
*
148156824 ACCCCATGTTTAGTGTCCTAG-CTAACT
1 ACCCCATGTTTAGTGT-CTAGACAAACT
148156851 ACCCCATGTTTAGTGT
1 ACCCCATGTTTAGTGT
148156867 TTGGAAACAC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 36 0.92
28 3 0.08
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (27 bp):
ACCCCATGTTTAGTGTCTAGACAAACT
Found at i:148171959 original size:39 final size:39
Alignment explanation
Indices: 148171905--148172067 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
148171895 TGTGAATGAA
148171905 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
148171944 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
148171983 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * **
148172022 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCAAAGGCGTT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
148172062 TGTGCG
1 TGTGCG
148172068 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 99 0.87
40 15 0.13
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:148179291 original size:29 final size:29
Alignment explanation
Indices: 148179249--148179416 Score: 257
Period size: 29 Copynumber: 5.8 Consensus size: 29
148179239 GCATGTATAT
148179249 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
148179278 GAATATGATTTGGGCATAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
148179307 GAATGTGATTTAGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
148179336 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * *
148179365 GATTGTGATTTGGGCCTAATAGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
148179394 GAATGAGA-TTGGGCCTAGTGGGC
1 GAATGTGATTTGGGCCTAATGGGC
148179417 TATATGCATG
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 13 0.10
29 113 0.90
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:148185496 original size:28 final size:29
Alignment explanation
Indices: 148185464--148185578 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
148185454 TACTTGTATC
*
148185464 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
148185492 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* *
148185521 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* *
148185550 TGGCCCGTT-AGACCC-AGTCACATTCATA
1 TGGCCCATTAAG-CCCAAATCACATTCATA
148185578 T
1 T
148185579 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:148185871 original size:16 final size:16
Alignment explanation
Indices: 148185834--148185871 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
148185824 CAGAATTTTG
*
148185834 GCTTTTCGGCATTTTA
1 GCTTTTCGGCATTTCA
*
148185850 GGTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
148185866 GCTTTT
1 GCTTTT
148185872 GCCGATACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.18, G:0.21, T:0.50
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:148190121 original size:40 final size:41
Alignment explanation
Indices: 148190064--148190273 Score: 236
Period size: 40 Copynumber: 5.3 Consensus size: 41
148190054 CTAACGGGGT
* * *
148190064 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
148190104 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
148190144 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
148190184 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * * * *
148190224 TAAGACCCGACGGC-CTTGTGCGAGAG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
148190262 TAAATCCCGAAG
1 TAAGTCCCGAAG
148190274 ATAATTGGGT
Statistics
Matches: 149, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 120 0.81
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:148192964 original size:43 final size:43
Alignment explanation
Indices: 148192917--148193028 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
148192907 TCCTATAAAT
* *
148192917 GGTCTTACATGTTATCACATATCGATGCCACTATCCCAAACAG
1 GGTCTTACATGTAATCACATATCGATGCCAATATCCCAAACAG
* * * * * * *
148192960 GGTCTTACACGAAATCA-ATTAACAATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCACA-TATCGATGCCAATATCCCAAACAG
*
148193003 GGTCTTACATGTAATCACATCTCGAT
1 GGTCTTACATGTAATCACATATCGAT
148193029 AACCTAATGT
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
42 1 0.02
43 51 0.96
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCAATATCCCAAACAG
Found at i:148195506 original size:42 final size:41
Alignment explanation
Indices: 148195443--148195599 Score: 167
Period size: 42 Copynumber: 3.9 Consensus size: 41
148195433 ATAGTCGAAA
148195443 CTATCTCAAATC-GCACACTAAGTGCCATATATAGCCAAAG
1 CTATCTCAAATCTGCACACTAAGTGCCATATATAGCCAAAG
* *
148195483 CTATCTCAATTCTTGCACACTAAGTGCCATATATAGCCGAAG
1 CTATCTCAAATC-TGCACACTAAGTGCCATATATAGCCAAAG
* * * * * **
148195525 CTATCTC-AATCTCGTACATTAGGTGCCATTTATAACTGAAG
1 CTATCTCAAATCT-GCACACTAAGTGCCATATATAGCCAAAG
* * *
148195566 CTATGTCAAATC-ACACACTAAGTGCCACATATAG
1 CTATCTCAAATCTGCACACTAAGTGCCATATATAG
148195600 TTGAATTGTC
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
40 27 0.28
41 31 0.32
42 38 0.40
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.27
Consensus pattern (41 bp):
CTATCTCAAATCTGCACACTAAGTGCCATATATAGCCAAAG
Found at i:148207296 original size:40 final size:40
Alignment explanation
Indices: 148207194--148207377 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
148207184 AAATTGAATG
* * * * *
148207194 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
148207234 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
148207274 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
148207314 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
148207354 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
148207378 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:148217727 original size:40 final size:40
Alignment explanation
Indices: 148217672--148217921 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
148217662 AACATTGGAA
148217672 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148217712 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148217752 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148217792 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
148217832 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
148217871 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
148217912 CTATATCCGG
1 ATATATCCGG
148217922 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:148225900 original size:40 final size:40
Alignment explanation
Indices: 148225845--148226094 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
148225835 AACATTGGAA
148225845 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148225885 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148225925 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
148225965 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
148226005 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
148226044 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
148226085 CTATATCCGG
1 ATATATCCGG
148226095 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:148228857 original size:28 final size:29
Alignment explanation
Indices: 148228822--148228893 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
148228812 AAAATGGTAC
*
148228822 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
148228850 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
148228879 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
148228894 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:148235201 original size:27 final size:28
Alignment explanation
Indices: 148235145--148235214 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
148235135 AAATTTGTAC
148235145 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
148235173 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
148235200 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
148235215 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:148240734 original size:24 final size:24
Alignment explanation
Indices: 148240702--148240788 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
148240692 AATCTCAAAT
148240702 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
148240726 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
148240750 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
148240774 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
148240789 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:148240754 original size:48 final size:48
Alignment explanation
Indices: 148240702--148240810 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
148240692 AATCTCAAAT
** *
148240702 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
148240750 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
148240798 GCACTATGTGTGC
1 GCACTATGTGTGC
148240811 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:148240801 original size:24 final size:24
Alignment explanation
Indices: 148240702--148240810 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
148240692 AATCTCAAAT
*
148240702 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
148240726 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
148240750 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
148240774 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
148240798 GCACTATGTGTGC
1 GCACTATGTGTGC
148240811 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:148248405 original size:24 final size:24
Alignment explanation
Indices: 148248373--148248459 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
148248363 AATCTCAAAT
*
148248373 GCACTATGTGTGTGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
148248397 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
148248421 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
148248445 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
148248460 ACATAATAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:148248472 original size:24 final size:24
Alignment explanation
Indices: 148248373--148248481 Score: 148
Period size: 24 Copynumber: 4.5 Consensus size: 24
148248363 AATCTCAAAT
* *
148248373 GCACTATGTGTGTGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
148248397 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
148248421 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
148248445 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
148248469 GCACTATGTGTGC
1 GCACTATGTGTGC
148248482 AACGTTTGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 72 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:148248472 original size:48 final size:48
Alignment explanation
Indices: 148248373--148248481 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
148248363 AATCTCAAAT
* ** *
148248373 GCACTATGTGTGTGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
148248421 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
148248469 GCACTATGTGTGC
1 GCACTATGTGTGC
148248482 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:148253702 original size:27 final size:28
Alignment explanation
Indices: 148253646--148253715 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
148253636 AAATTTGTAC
148253646 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
148253674 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
148253701 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
148253716 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:148257521 original size:38 final size:39
Alignment explanation
Indices: 148257408--148257550 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
148257398 CCGCACAAAG
*
148257408 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
148257448 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
148257487 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
148257525 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
148257551 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:148257529 original size:77 final size:79
Alignment explanation
Indices: 148257368--148257549 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
148257358 TCGTTCAAAC
* * **
148257368 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
148257433 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
148257448 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
148257511 CAATTTGCACAATT
66 CAATTTGCACAATT
148257525 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
148257550 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:148263488 original size:13 final size:13
Alignment explanation
Indices: 148263470--148263498 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
148263460 AAATTCAGTT
148263470 GCTCGGCATCGTC
1 GCTCGGCATCGTC
148263483 GCTCGGCATCGTC
1 GCTCGGCATCGTC
148263496 GCT
1 GCT
148263499 ATCCGTAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.38, G:0.31, T:0.24
Consensus pattern (13 bp):
GCTCGGCATCGTC
Found at i:148265501 original size:38 final size:39
Alignment explanation
Indices: 148265388--148265530 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
148265378 CCGCACAAAG
*
148265388 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
148265428 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
148265467 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
148265505 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
148265531 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:148265509 original size:77 final size:79
Alignment explanation
Indices: 148265348--148265529 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
148265338 TCGTTCAAAC
* * **
148265348 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
148265413 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
148265428 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
148265491 CAATTTGCACAATT
66 CAATTTGCACAATT
148265505 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
148265530 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:148274817 original size:40 final size:40
Alignment explanation
Indices: 148274758--148274926 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
148274748 CGGGACTTTA
* * *
148274758 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
148274798 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
148274838 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
148274878 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
148274918 CCCGGATAT
1 CCCGGATAT
148274927 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:148281029 original size:12 final size:12
Alignment explanation
Indices: 148281012--148281037 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
148281002 TGTTCAGTTT
148281012 GATGGTTTGCAG
1 GATGGTTTGCAG
148281024 GATGGTTTGCAG
1 GATGGTTTGCAG
148281036 GA
1 GA
148281038 CAAGGATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.08, G:0.42, T:0.31
Consensus pattern (12 bp):
GATGGTTTGCAG
Found at i:148287152 original size:93 final size:93
Alignment explanation
Indices: 148287040--148287211 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
148287030 GCCCATAAGT
* *
148287040 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
148287105 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
148287133 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
148287198 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
148287212 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:148287207 original size:46 final size:46
Alignment explanation
Indices: 148287032--148287207 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
148287022 TGTAACCCGC
* * *
148287032 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
148287078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
148287128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
148287171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
148287208 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:148289635 original size:30 final size:30
Alignment explanation
Indices: 148289591--148289679 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
148289581 CAAAGATAAC
148289591 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
148289620 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
148289650 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
148289680 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:148289639 original size:15 final size:15
Alignment explanation
Indices: 148289591--148289670 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
148289581 CAAAGATAAC
*
148289591 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
148289605 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
148289620 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
148289635 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
148289650 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
148289665 AAGAAA
1 AAGAAA
148289671 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:148289679 original size:15 final size:15
Alignment explanation
Indices: 148289602--148289679 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
148289592 AGAAAACCGA
148289602 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
148289617 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
148289631 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
148289646 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
148289662 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
148289677 ATA
1 ATA
148289680 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:148292678 original size:93 final size:93
Alignment explanation
Indices: 148292566--148292737 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
148292556 GCCCATAAGT
* *
148292566 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
148292631 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
148292659 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
148292724 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
148292738 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:148292733 original size:46 final size:46
Alignment explanation
Indices: 148292558--148292733 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
148292548 TGTAACCCGC
* * *
148292558 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
148292604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
148292654 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
148292697 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
148292734 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:148297702 original size:27 final size:27
Alignment explanation
Indices: 148297666--148297913 Score: 334
Period size: 27 Copynumber: 9.2 Consensus size: 27
148297656 AGAGGTCGTT
* *
148297666 AAATGACCGTAATGCCTCTGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
148297693 AAATAACCGTAATGCTCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
148297720 AAATGACCGTGATGCCCTTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
148297747 AAATGACTGTAATGCCCCTGTAGAGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* * * *
148297774 AAACGACTGTAATGCCCCTATAAGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
*
148297801 AAATGACCGTAATGCCACTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
***
148297828 AAATTTTCGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
148297855 AAATGACCGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
* *
148297882 AAATGACCGTAATACCCCTGTATGGTA
1 AAATGACCGTAATGCCCCTGTAGGGTA
148297909 AAATG
1 AAATG
148297914 TCGATTATGC
Statistics
Matches: 191, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAGGGTA
Found at i:148298142 original size:27 final size:27
Alignment explanation
Indices: 148298056--148298142 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
148298046 GGAAGTTTTG
* ** *
148298056 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATACCACATTTACTGT
* * * *
148298083 TACTGGTGGCTATGCCACAATTATTGA
1 TACTGGTGGCTATACCACATTTACTGT
*
148298110 TACTGGTGGCTTTACCACATTTACTGT
1 TACTGGTGGCTATACCACATTTACTGT
*
148298137 TTCTGG
1 TACTGG
148298143 CAGCTATGTT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATACCACATTTACTGT
Found at i:148298248 original size:21 final size:22
Alignment explanation
Indices: 148298224--148298269 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
148298214 TATCCCCACA
*
148298224 TGGTGTGTTGGTTGG-TACGGG
1 TGGTGTGCTGGTTGGATACGGG
*
148298245 TGGTGTGCTGGTTGGATATGGG
1 TGGTGTGCTGGTTGGATACGGG
148298267 TGG
1 TGG
148298270 GATGCATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.07, C:0.04, G:0.52, T:0.37
Consensus pattern (22 bp):
TGGTGTGCTGGTTGGATACGGG
Found at i:148298399 original size:33 final size:33
Alignment explanation
Indices: 148298347--148298455 Score: 164
Period size: 33 Copynumber: 3.3 Consensus size: 33
148298337 ATAAGGCTAG
* *
148298347 GGCCCAGATTGTACAGATACTGAATAGGGCTTA
1 GGCCCAGACTGTACTGATACTGAATAGGGCTTA
*
148298380 GGCCTAGACTGTACTGATACTGAATAGGGCTTA
1 GGCCCAGACTGTACTGATACTGAATAGGGCTTA
* * *
148298413 GGCCCAGATTGTACTAATACTGAATAAGGCTTA
1 GGCCCAGACTGTACTGATACTGAATAGGGCTTA
148298446 GGCCCAGACT
1 GGCCCAGACT
148298456 ATGCTATTCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (33 bp):
GGCCCAGACTGTACTGATACTGAATAGGGCTTA
Found at i:148306502 original size:30 final size:30
Alignment explanation
Indices: 148306466--148306525 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
148306456 TTCCCGAGCC
*
148306466 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
148306496 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
148306526 CATATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:148307066 original size:46 final size:46
Alignment explanation
Indices: 148306999--148307126 Score: 229
Period size: 46 Copynumber: 2.8 Consensus size: 46
148306989 AACTAGGCAT
* *
148306999 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGG
1 CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGA
*
148307045 CCGAGCTCCTTGAGTTGAGTCCGGGTTCACTTATGGATGCAAACGA
1 CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGA
148307091 CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGG
148307127 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.27
Consensus pattern (46 bp):
CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGA
Found at i:148310281 original size:39 final size:39
Alignment explanation
Indices: 148310107--148310264 Score: 280
Period size: 39 Copynumber: 4.1 Consensus size: 39
148310097 TGTGAATATA
*
148310107 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
148310146 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
148310185 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
148310224 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
148310263 TA
1 TA
148310265 CGTGCTGGAC
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:148312654 original size:13 final size:13
Alignment explanation
Indices: 148312636--148312661 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
148312626 ATACGCTCGG
148312636 GAATGTGTTTTGT
1 GAATGTGTTTTGT
148312649 GAATGTGTTTTGT
1 GAATGTGTTTTGT
148312662 CCGAGGCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
GAATGTGTTTTGT
Found at i:148318505 original size:23 final size:23
Alignment explanation
Indices: 148318469--148318586 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
148318459 NNNAAACCCT
148318469 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148318491 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148318514 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
148318538 TTTTAATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
148318561 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148318584 TTT
1 TTT
148318587 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
22 20 0.22
23 39 0.42
24 34 0.37
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:148318657 original size:9 final size:9
Alignment explanation
Indices: 148318643--148318699 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
148318633 ATCTCATGTG
148318643 CATATCATA
1 CATATCATA
*
148318652 CATATCATGTG
1 CATATCA--TA
148318663 CATATCATA
1 CATATCATA
* *
148318672 CATGTCATGTG
1 CATATCA--TA
148318683 CATATCATA
1 CATATCATA
148318692 CATATCAT
1 CATATCAT
148318700 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:148318659 original size:20 final size:20
Alignment explanation
Indices: 148318631--148318701 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
148318621 GCATTTATGA
*
148318631 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
148318651 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
148318671 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
148318691 ACATATCATGT
1 ACATATCATGT
148318702 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:148318666 original size:11 final size:11
Alignment explanation
Indices: 148318636--148318690 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
148318626 TATGAACATC
148318636 TCATGTGCATA
1 TCATGTGCATA
*
148318647 TCA--TACATA
1 TCATGTGCATA
148318656 TCATGTGCATA
1 TCATGTGCATA
* *
148318667 TCA--TACATG
1 TCATGTGCATA
148318676 TCATGTGCATA
1 TCATGTGCATA
148318687 TCAT
1 TCAT
148318691 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Done.