Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 48 of 770
Found at i:13746644 original size:44 final size:43
Alignment explanation
Indices: 13746511--13746647 Score: 152
Period size: 44 Copynumber: 3.1 Consensus size: 43
13746501 CTTTAACCTG
* *
13746511 CTCCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCTATCTG
1 CTCCACAGCAACTTCA-GGAGATAAGGTTAATGGCTTCAATCTA
* * * *
13746555 CTCCACTGTAACTTCAGAGAGATAAGACTTATAT--CTTCAACCTA
1 CTCCACAGCAACTTCAG-GAGATAAG-GTTA-ATGGCTTCAATCTA
*
13746599 CTCCACAGCAACTTCAGGCAGATAAGGTTAATGGCTTCCATCTA
1 CTCCACAGCAACTTCAGG-AGATAAGGTTAATGGCTTCAATCTA
13746643 CTCCA
1 CTCCA
13746648 TTATAACTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
44 64 0.84
45 3 0.04
46 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
CTCCACAGCAACTTCAGGAGATAAGGTTAATGGCTTCAATCTA
Found at i:13746647 original size:88 final size:88
Alignment explanation
Indices: 13746425--13746669 Score: 321
Period size: 88 Copynumber: 2.8 Consensus size: 88
13746415 TCCACCTGCC
* * * ** * *
13746425 CCACTGCAAGTTCAGGGGGATAAGGTTTGTGGCTTCCATC-AGCTCTACTGCAACTTCAGAGAGA
1 CCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCCATCTA-CTCCACTGTAACTTCAGAGAGA
* * *
13746489 TAAGACTTGTATCTTTAACCTGCT
65 TAAGACTTATATCTTCAACCTACT
* *
13746513 CCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCTATCTGCTCCACTGTAACTTCAGAGAGAT
1 CCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCCATCTACTCCACTGTAACTTCAGAGAGAT
13746578 AAGACTTATATCTTCAACCTACT
66 AAGACTTATATCTTCAACCTACT
* * * * *
13746601 CCACAGCAACTTCAGGCAGATAAGGTTAATGGCTTCCATCTACTCCATTATAACTTCGGGGAGAT
1 CCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCCATCTACTCCACTGTAACTTCAGAGAGAT
13746666 AAGA
66 AAGA
13746670 TTCGCCATGA
Statistics
Matches: 137, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
88 137 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (88 bp):
CCACAGCAACTTCAGGGAGATAAGGTTAATGGCTTCCATCTACTCCACTGTAACTTCAGAGAGAT
AAGACTTATATCTTCAACCTACT
Found at i:13746656 original size:44 final size:43
Alignment explanation
Indices: 13746520--13746668 Score: 140
Period size: 44 Copynumber: 3.4 Consensus size: 43
13746510 GCTCCACAGC
* * *
13746520 AACTTCAGGGAGATAAGGTTAATGGCTTCTATCTGCTCCACTGT
1 AACTTCAGGGAGATAAGGTTAATGGCTTCAATCTACTCCA-TAT
* * * * *
13746564 AACTTCAGAGAGATAAGACTTATAT--CTTCAACCTACTCCACAGC
1 AACTTCAGGGAGATAAG-GTTA-ATGGCTTCAATCTACTCCATA-T
* *
13746608 AACTTCAGGCAGATAAGGTTAATGGCTTCCATCTACTCCATTAT
1 AACTTCAGGGAGATAAGGTTAATGGCTTCAATCTACTCCA-TAT
*
13746652 AACTTCGGGGAGATAAG
1 AACTTCAGGGAGATAAG
13746669 ATTCGCCATG
Statistics
Matches: 82, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.02
43 3 0.04
44 71 0.87
45 4 0.05
46 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
AACTTCAGGGAGATAAGGTTAATGGCTTCAATCTACTCCATAT
Found at i:13746814 original size:45 final size:45
Alignment explanation
Indices: 13746750--13746909 Score: 157
Period size: 45 Copynumber: 3.6 Consensus size: 45
13746740 CCTGTTCCAT
* * *
13746750 TGCAACTTCAGGGAAATAAGATTTATTATCTTCAATCTGCTTCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAATCTTCAATCTGCTTCAC
* *
13746795 TGCAACTTCAGGGAGATAAGACTTGGTAAT-TTCAACCTGC-TCTAC
1 TGCAACTTCAGGGAGATAAGA-TTTGTAATCTTCAATCTGCTTC-AC
* * * ** * *
13746840 TGCATA-TTCAGAGAGATGAGGTTTGCGA-CTTCAATCTGCTCCGC
1 TGCA-ACTTCAGGGAGATAAGATTTGTAATCTTCAATCTGCTTCAC
13746884 TGCAACTTCAGGGAGATAAGATTTGT
1 TGCAACTTCAGGGAGATAAGATTTGT
13746910 CATGGTAACT
Statistics
Matches: 91, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 36 0.40
45 48 0.53
46 6 0.07
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (45 bp):
TGCAACTTCAGGGAGATAAGATTTGTAATCTTCAATCTGCTTCAC
Found at i:13751081 original size:12 final size:12
Alignment explanation
Indices: 13751064--13751097 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13751054 CGCGCTCTTC
*
13751064 TCTTTTCTTGTT
1 TCTTTTCTTGCT
13751076 TCTTTTCTTGCT
1 TCTTTTCTTGCT
13751088 TCTTTCTCTT
1 TCTTT-TCTT
13751098 TTGCTTCGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.06, T:0.71
Consensus pattern (12 bp):
TCTTTTCTTGCT
Found at i:13753499 original size:46 final size:46
Alignment explanation
Indices: 13753449--13753624 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
13753439 TGGTTGAGCA
13753449 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13753495 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
13753540 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13753588 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13753625 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13753605 original size:93 final size:93
Alignment explanation
Indices: 13753446--13753617 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
13753436 GGATGGTTGA
***
13753446 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
13753511 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
13753539 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
13753604 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
13753618 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13761020 original size:46 final size:46
Alignment explanation
Indices: 13760970--13761145 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
13760960 TGGTTGAGCA
13760970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13761016 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
13761061 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13761109 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13761146 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13761126 original size:93 final size:93
Alignment explanation
Indices: 13760967--13761138 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
13760957 GGATGGTTGA
* *
13760967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
13761032 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
13761060 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
13761125 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
13761139 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13767137 original size:40 final size:40
Alignment explanation
Indices: 13767093--13767276 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
13767083 GCTACTCGTT
* *
13767093 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* * *
13767133 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
* * *
13767173 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACA
* * * * *
13767212 CAAATGCCTTC-GGATCTTAGTCCGGATAGAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CA
13767253 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
13767277 ACATCATTCG
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:13767204 original size:79 final size:81
Alignment explanation
Indices: 13767095--13767277 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
13767085 TACTCGTTCA
* * *
13767095 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACGCAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCG-GATCTTAACCCGG
** *
13767158 ATTTAGTAAC-TCGCACC
65 ATAGAGTAACTTAGCA-C
* **
13767175 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
*
13767238 TAGAGTCACTTAGCAC
66 TAGAGTAACTTAGCAC
*
13767254 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
13767278 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.66
80 28 0.32
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TAGAGTAACTTAGCAC
Found at i:13770627 original size:29 final size:29
Alignment explanation
Indices: 13770594--13770696 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
13770584 CCTTCGAGCT
** * *
13770594 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
13770623 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
13770652 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
13770681 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
13770697 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:13770636 original size:58 final size:58
Alignment explanation
Indices: 13770565--13770696 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 58
13770555 AATTTAAGCC
** * * * * *
13770565 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
13770623 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
13770681 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
13770697 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:13775113 original size:21 final size:21
Alignment explanation
Indices: 13775089--13775134 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
13775079 CCACACCAGT
* * *
13775089 GTGTGGGGCCTTCACATGGGC
1 GTGTGAGGCCTCCACATAGGC
13775110 GTGTGAGGCCTCCACATAGGC
1 GTGTGAGGCCTCCACATAGGC
13775131 GTGT
1 GTGT
13775135 AAACCCCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.24, G:0.39, T:0.24
Consensus pattern (21 bp):
GTGTGAGGCCTCCACATAGGC
Found at i:13780637 original size:66 final size:66
Alignment explanation
Indices: 13780518--13780669 Score: 214
Period size: 66 Copynumber: 2.3 Consensus size: 66
13780508 AGCTCAAGTG
* * ** *
13780518 CCAAATTATCTTAAAGTGTATATATGTGTAATGTGATGCATGCCTGTAGGAGTATGTGGTTGCTA
1 CCAAATTATCTTAAAATGTATATATGTGTAATGTGATGCACGCCTAAAGGAGTATGTGCTTGCTA
13780583 T
66 T
* *
13780584 CCAAATTATCTTAAAATGTATATATGTGTAATGTGATGTACGCCTAAATGAGTATGTGCTTGCTA
1 CCAAATTATCTTAAAATGTATATATGTGTAATGTGATGCACGCCTAAAGGAGTATGTGCTTGCTA
13780649 T
66 T
* *
13780650 GCAAATTATCGTTTAAATGT
1 CCAAATTATC-TTAAAATGT
13780670 GATCTTGTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
66 68 0.89
67 8 0.11
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (66 bp):
CCAAATTATCTTAAAATGTATATATGTGTAATGTGATGCACGCCTAAAGGAGTATGTGCTTGCTA
T
Found at i:13785025 original size:22 final size:24
Alignment explanation
Indices: 13784975--13785025 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
13784965 AGAAAAAAAC
*
13784975 TATAAAAAAAGTAACAATAAAATG
1 TATAAAAAAAGTAACAATAAAATA
* *
13784999 CATAATAAAA-TAA-AATAAAATA
1 TATAAAAAAAGTAACAATAAAATA
13785021 TATAA
1 TATAA
13785026 GCTTGAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 12 0.52
23 3 0.13
24 8 0.35
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (24 bp):
TATAAAAAAAGTAACAATAAAATA
Found at i:13789896 original size:29 final size:28
Alignment explanation
Indices: 13789843--13789899 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
13789833 CTTTAAAAAA
*
13789843 AGGTACACAGCCATGTGCTAGGCCATGT
1 AGGTACACAGCCATGTGCCAGGCCATGT
*
13789871 AGGTCACACAGTCATGTGACCA-GCCATGT
1 AGGT-ACACAGCCATGTG-CCAGGCCATGT
13789900 GAATCCACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 19 0.76
30 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.21
Consensus pattern (28 bp):
AGGTACACAGCCATGTGCCAGGCCATGT
Found at i:13792838 original size:66 final size:66
Alignment explanation
Indices: 13792762--13792896 Score: 261
Period size: 66 Copynumber: 2.0 Consensus size: 66
13792752 GGATTAGGAG
*
13792762 TATAAAATTCACAATTAACATCAAATAATCACCCAAAAATGCTTTATGAATGAGGTTAAAACATG
1 TATAAAATTCACAATTAACATCAAATAATCACCCAAAAACGCTTTATGAATGAGGTTAAAACATG
13792827 T
66 T
13792828 TATAAAATTCACAATTAACATCAAATAATCACCCAAAAACGCTTTATGAATGAGGTTAAAACATG
1 TATAAAATTCACAATTAACATCAAATAATCACCCAAAAACGCTTTATGAATGAGGTTAAAACATG
13792893 T
66 T
13792894 TAT
1 TAT
13792897 TTTTAGCACT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 68 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.29
Consensus pattern (66 bp):
TATAAAATTCACAATTAACATCAAATAATCACCCAAAAACGCTTTATGAATGAGGTTAAAACATG
T
Found at i:13801637 original size:25 final size:25
Alignment explanation
Indices: 13801603--13801656 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
13801593 AGGAAGCTAT
13801603 TTGGTTACAAGGTATGGCTAAAACC
1 TTGGTTACAAGGTATGGCTAAAACC
*
13801628 TTGGTTACAAGGTATGGTTAAAACC
1 TTGGTTACAAGGTATGGCTAAAACC
13801653 TTGG
1 TTGG
13801657 GATTGGTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (25 bp):
TTGGTTACAAGGTATGGCTAAAACC
Found at i:13804101 original size:22 final size:21
Alignment explanation
Indices: 13804076--13804132 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
13804066 TTTTTTTTAA
13804076 TTTAGTACTTGTTTTTAATTGT
1 TTTAGTACTTGTTTTTAATT-T
* **
13804098 TTTAGTAGTTAAATTTTAATTT
1 TTTAGTACTT-GTTTTTAATTT
13804120 TTT-GTACTTGTTT
1 TTTAGTACTTGTTT
13804133 GTGTGCGAGC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 2 0.07
21 5 0.18
22 13 0.46
23 8 0.29
ACGTcount: A:0.21, C:0.04, G:0.12, T:0.63
Consensus pattern (21 bp):
TTTAGTACTTGTTTTTAATTT
Found at i:13804360 original size:16 final size:16
Alignment explanation
Indices: 13804335--13804372 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13804325 ACATATATGT
*
13804335 TTGTTTGAATGATAAA
1 TTGTTAGAATGATAAA
*
13804351 TTGTTAGAATGTTAAA
1 TTGTTAGAATGATAAA
13804367 TT-TTAG
1 TTGTTAG
13804373 TTAATTGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.47
Consensus pattern (16 bp):
TTGTTAGAATGATAAA
Found at i:13805421 original size:17 final size:16
Alignment explanation
Indices: 13805378--13805422 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 16
13805368 TATAATAAAT
13805378 ATTATTAACTTCAGTTA
1 ATTATTAA-TTCAGTTA
13805395 ATTGATTAATTCAGTTA
1 ATT-ATTAATTCAGTTA
13805412 ATTATCTAATT
1 ATTAT-TAATT
13805423 TGAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.08
17 19 0.73
18 5 0.19
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (16 bp):
ATTATTAATTCAGTTA
Found at i:13806435 original size:18 final size:18
Alignment explanation
Indices: 13806401--13806436 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13806391 GAGCGCCTAA
*
13806401 CACGCAAACTCATAGTGT
1 CACGCAAACTCAAAGTGT
*
13806419 CACGCAAACTTAAAGTGT
1 CACGCAAACTCAAAGTGT
13806437 GAACCGTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (18 bp):
CACGCAAACTCAAAGTGT
Found at i:13806683 original size:41 final size:40
Alignment explanation
Indices: 13806600--13806708 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 40
13806590 TAGATGGAGT
* * * * *
13806600 TTTAGCGACGCTTTTAAAAAAACGCCGCAATAGGTCGACC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCAATAAGTCGACC
* *
13806640 TTTAGCGGCGTTTTTTGAAAAAGCGCCGCCATAAGTCGGCC
1 TTTAGCGGCGTTTTTT-AAAAAGCGCCGCAATAAGTCGACC
*
13806681 TTTAGCGGCGTTTTTTTAAAAGCGCCGC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGC
13806709 TAAAGGTTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 24 0.40
41 36 0.60
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCAATAAGTCGACC
Found at i:13807417 original size:15 final size:14
Alignment explanation
Indices: 13807399--13807441 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
13807389 CTTAATATTT
13807399 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
13807414 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
13807429 TTATGATTTAGGG
1 TTATGGTTTAGGG
13807442 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:13810640 original size:134 final size:133
Alignment explanation
Indices: 13810417--13810669 Score: 488
Period size: 134 Copynumber: 1.9 Consensus size: 133
13810407 TGGTGATTCC
13810417 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
13810482 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
13810547 TAT
131 TAT
*
13810550 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGT
13810615 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
13810670 TGTTGAATTC
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
133 30 0.25
134 88 0.75
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.52
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:13812683 original size:21 final size:21
Alignment explanation
Indices: 13812659--13812698 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
13812649 GTTTTTATGT
*
13812659 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
13812680 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
13812699 GAATTAGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:13814604 original size:371 final size:371
Alignment explanation
Indices: 13813728--13814638 Score: 1781
Period size: 371 Copynumber: 2.5 Consensus size: 371
13813718 CTTGTCCATT
*
13813728 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
13813793 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
13813858 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
13813923 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTATTATAAAAATTAAACTAC
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTATTATAAAAATTAAACTAC
13813988 GATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
261 GATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
13814053 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAATTACTTTTTATC
326 ATTTAATATTTTTAAATTTCTTTAAAAGTTATAATTACTTTTTATC
13814099 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
13814164 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
13814229 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
13814294 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTATTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTA-TTATAAAAATTAAACTA
13814359 CGATTC-TTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
260 CGATTCTTTTTTTATATTATTATATTCAAATTACTA-TTTTTTATATTAATAATGTTTTATTTTA
13814423 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAATTACTTTTTATC
324 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAATTACTTTTTATC
13814471 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
13814536 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTA-GT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
13814600 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
13814639 TGTTTCAATT
Statistics
Matches: 537, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
371 311 0.58
372 226 0.42
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (371 bp):
AAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTGTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTATTATAAAAATTAAACTAC
GATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTATATTAATAATGTTTTATTTTAAT
ATTTAATATTTTTAAATTTCTTTAAAAGTTATAATTACTTTTTATC
Found at i:13814753 original size:24 final size:24
Alignment explanation
Indices: 13814726--13814793 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
13814716 ATTATTATTG
*
13814726 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
* *
13814750 AAATATTATTC-TCTGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
13814774 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
13814794 CCATTTAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.05
24 34 0.89
25 2 0.05
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:13815014 original size:15 final size:15
Alignment explanation
Indices: 13814970--13815025 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
13814960 AACGACATGT
13814970 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
13814986 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
13814999 ATATTATTTAATTAA
1 ATATTATTTAATTAA
13815014 ATATTATTTAAT
1 ATATTATTTAAT
13815026 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:13815142 original size:9 final size:9
Alignment explanation
Indices: 13815130--13815328 Score: 107
Period size: 9 Copynumber: 21.6 Consensus size: 9
13815120 TATTTGATAT
*
13815130 CATAATTTA
1 CATAACTTA
*
13815139 CATAGCTTA
1 CATAACTTA
* *
13815148 TATAACATA
1 CATAACTTA
*
13815157 TATAACTTA
1 CATAACTTA
13815166 CATAACTTA
1 CATAACTTA
*
13815175 TATAACTTA
1 CATAACTTA
*
13815184 TATAACTTA
1 CATAACTTA
* *
13815193 GATAA-ATA
1 CATAACTTA
*
13815201 TATAACTTA
1 CATAACTTA
13815210 CATAACTTA
1 CATAACTTA
13815219 CATAATACTTA
1 CAT-A-ACTTA
* *
13815230 AATATATTTTATA
1 CATA-A--CT-TA
*
13815243 TCATAATTTA
1 -CATAACTTA
13815253 CATAACTTA
1 CATAACTTA
13815262 CATAACTTA
1 CATAACTTA
* *
13815271 GATAA-ATA
1 CATAACTTA
* *
13815279 TATAATTTA
1 CATAACTTA
*
13815288 CATAA-ATA
1 CATAACTTA
* * *
13815296 TATATCATA
1 CATAACTTA
*
13815305 TCATAAATTA
1 -CATAACTTA
13815315 CATAACTTA
1 CATAACTTA
13815324 CATAA
1 CATAA
13815329 TACTTAAATA
Statistics
Matches: 150, Mismatches: 30, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
8 17 0.11
9 106 0.71
10 11 0.07
11 9 0.06
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.39
Consensus pattern (9 bp):
CATAACTTA
Found at i:13815212 original size:105 final size:105
Alignment explanation
Indices: 13815099--13815352 Score: 276
Period size: 114 Copynumber: 2.3 Consensus size: 105
13815089 TGAAATAAAA
* * * * *
13815099 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAGCTTATATAACATATATAACT
1 AACTTACATAATACATAAATATATTTCATATCATAATTTACATAACTTACATAACATAGATAA-A
* *
13815164 TACATAACTTATATAACTTATATAACTTAGATAAAT-ATATAACTTACAT
65 TACATAACTTACATAA-ATATATAAC----AT--ATCATA-AA-TTACAT
* * *
13815213 AACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTAGATAAAT
1 AACTTACATAATACATAAATATATTTCATATCATAATTTACATAACTTACATAACATAGATAAAT
* * *
13815278 ATATAATTTACATAAATATATATCATATCATAAATTACAT
66 ACATAACTTACATAAATATATAACATATCATAAATTACAT
* *
13815318 AACTTACATAATACTTAAATATATATCATATCATA
1 AACTTACATAATACATAAATATATTTCATATCATA
13815353 CATAACTAGT
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
105 39 0.31
106 4 0.03
107 3 0.02
108 2 0.02
112 7 0.06
113 13 0.10
114 57 0.46
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (105 bp):
AACTTACATAATACATAAATATATTTCATATCATAATTTACATAACTTACATAACATAGATAAAT
ACATAACTTACATAAATATATAACATATCATAAATTACAT
Found at i:13815389 original size:105 final size:102
Alignment explanation
Indices: 13815198--13815402 Score: 234
Period size: 105 Copynumber: 2.0 Consensus size: 102
13815188 ACTTAGATAA
* * * *
13815198 ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTAC
1 ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
* * *
13815263 ATAACTTAGATAAATATATAATTTACATAAATATATATC
66 AAAACTTACATAAATACATAA--TACATAAATATATATC
**
13815302 ATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACA-TAAC-TAGTTT
1 ATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATATCATA-ATTAACATAACTT
* * * *
13815365 ACAAAATTTACTTAACTTACATAATACATAAATCTATA
64 ACAAAACTTACATAA-ATACATAATACATAAATATATA
13815403 GTCGAAAATC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
103 13 0.15
104 19 0.22
105 52 0.61
106 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (102 bp):
ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
AAAACTTACATAAATACATAATACATAAATATATATC
Found at i:13821000 original size:21 final size:21
Alignment explanation
Indices: 13820967--13821017 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
13820957 ACAACTTAGA
*
13820967 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
13820988 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
13821009 GCAGAGGCA
1 GCAGAGGCA
13821018 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:13826333 original size:28 final size:28
Alignment explanation
Indices: 13826289--13826376 Score: 158
Period size: 28 Copynumber: 3.1 Consensus size: 28
13826279 AGGGTAATCC
*
13826289 CATTACAAAGTCTATGGTAATTCTTTCT
1 CATTACAAAGTCCATGGTAATTCTTTCT
*
13826317 CATTACAAAGTCCATGGTAATTCTTTCC
1 CATTACAAAGTCCATGGTAATTCTTTCT
13826345 CATTACAAAGTCCATGGTAATTCTTTCT
1 CATTACAAAGTCCATGGTAATTCTTTCT
13826373 CATT
1 CATT
13826377 TCTATTTTGG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (28 bp):
CATTACAAAGTCCATGGTAATTCTTTCT
Found at i:13831895 original size:14 final size:15
Alignment explanation
Indices: 13831864--13831896 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13831854 AACATACAAG
13831864 TAAAGCACATTAACA
1 TAAAGCACATTAACA
*
13831879 TAAATCACATT-ACA
1 TAAAGCACATTAACA
13831893 TAAA
1 TAAA
13831897 AACACAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAGCACATTAACA
Found at i:13832263 original size:20 final size:20
Alignment explanation
Indices: 13832238--13832282 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
13832228 AGCACATGTA
*
13832238 TTCATCAAATTTTATAACTT
1 TTCATCAAATTTTACAACTT
13832258 TTCATCAAATTTTACAACTT
1 TTCATCAAATTTTACAACTT
13832278 TTCAT
1 TTCAT
13832283 TTTAGTCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (20 bp):
TTCATCAAATTTTACAACTT
Found at i:13839508 original size:48 final size:49
Alignment explanation
Indices: 13839401--13839517 Score: 139
Period size: 48 Copynumber: 2.4 Consensus size: 49
13839391 GTCGATGTCG
* * * *
13839401 TGTCCCAGACAGGACTTACATTGACTTTCATATATCGAGGCCGATTCCA
1 TGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAGGCCGATGCCA
* *
13839450 TGTCCCAGACAGGTCTTACAGTGA-TCTCATCTATCG-GTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAG-GCCGATGCCA
**
13839498 TGTCTTAGACAGGTCTTACA
1 TGTCCCAGACAGGTCTTACA
13839518 CTAACAAACA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
47 1 0.02
48 36 0.61
49 22 0.37
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACAGTGACTCTCATATATCGAGGCCGATGCCA
Found at i:13839605 original size:47 final size:46
Alignment explanation
Indices: 13839540--13839665 Score: 128
Period size: 46 Copynumber: 2.7 Consensus size: 46
13839530 AAGCTAACGC
* * * * * *
13839540 CATGTCCCAAATAGGTCTTACACTAGCTTGTATATCCCGA-GATGATG
1 CATGTCCCAGACAAGTCTTACACTAGC-TCT-TATCCCAATGACGATG
* *
13839587 CATGTCCCAGACAAGTCTTACACTAGCTCTTGTCTCAATGACGATG
1 CATGTCCCAGACAAGTCTTACACTAGCTCTTATCCCAATGACGATG
* * *
13839633 CATGTCCCAGACATGTCTTACACTGGCACTTAT
1 CATGTCCCAGACAAGTCTTACACTAGCTCTTAT
13839666 GATGTGGCCG
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
45 5 0.08
46 37 0.56
47 24 0.36
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACAAGTCTTACACTAGCTCTTATCCCAATGACGATG
Found at i:13842261 original size:64 final size:63
Alignment explanation
Indices: 13842168--13842865 Score: 353
Period size: 64 Copynumber: 10.7 Consensus size: 63
13842158 TTCTTCAAAA
*
13842168 TTGCGATCTTAAATCAGCTAACTCAAATAAAATTGTTCTTGATCTTAAATCGAATGAACTTAGG
1 TTGCGATCTTAAATCAGCTAACT-TAATAAAATTGTTCTTGATCTTAAATCGAATGAACTTAGG
* * * * * **
13842232 TTGCGATCTTAAACCAACTAAACTTAATAATATTGGTT-GTGATCTTAAATC-AGTGAGTTGTTT
1 TTGCGATCTTAAATCAGCT-AACTTAATAAAATT-GTTCTTGATCTTAAATCGAATGA---ACTT
*
13842295 GGAG
61 AG-G
* * * * * *
13842299 TTGCAATTTTAAATCAGCTAACTCGAATAAATTTGTTCATGATCTTAAATTGAATGAACTTAGG
1 TTGCGATCTTAAATCAGCTAACT-TAATAAAATTGTTCTTGATCTTAAATCGAATGAACTTAGG
* * * * * * * *
13842363 TTGGGATCTTAAATCAACTAACCTTAATAATATCGATT-GTGATCTTAAAT-TAGTGAGTTATTT
1 TTGCGATCTTAAATCAGCTAA-CTTAATAAAATTG-TTCTTGATCTTAAATCGAATGA---ACTT
13842426 AGAG
61 AG-G
* * * * *
13842430 TTACGATATTAAATCAGCTAACTCGAATAAAATTGTTCTTCG-TCTTAAATCAAAAGAACTTAGG
1 TTGCGATCTTAAATCAGCTAACT-TAATAAAATTGTTCTT-GATCTTAAATCGAATGAACTTAGG
* * * * ***
13842494 TTGCGATATTAAATCAGCTAACCTTAATAATATCAGTT-TTGATCTTAAATCAGCGA-GTTGTTC
1 TTGCGATCTTAAATCAGCTAA-CTTAATAAAAT-TGTTCTTGATCTTAAATC-G-AATGAACTT-
*
13842557 GGAG
61 AG-G
* * * *
13842561 TTGCGATATTAAATTAGCTAACTCAA-ACAAATTTGTTCATGATCTTAAATCGAATGAACTTAGG
1 TTGCGATCTTAAATCAGCTAACTTAATA-AAA-TTGTTCTTGATCTTAAATCGAATGAACTTAGG
* * * *
13842625 TTGCGATCCTAAATCAACTAACCTTAATAATATTAGTTGC--GATCTTAAAT--AA-GCAAGTTA
1 TTGCGATCTTAAATCAGCTAA-CTTAATAAAATT-GTT-CTTGATCTTAAATCGAATG-AACTTA
13842685 TTCGGAG
62 ----G-G
* * * * * * * *
13842692 TTACGATCTTAAGTTAGCTAACTCAAATAAAATTGTTCATGATTTTAAATTGAGTGAACTTAGG
1 TTGCGATCTTAAATCAGCTAACT-TAATAAAATTGTTCTTGATCTTAAATCGAATGAACTTAGG
* * * * * * ***
13842756 TTGCGATCTTAAATCAGTTAACCTTAATAATATCAGTT-GTGATCTTAAATCAACAAGTTGTTCA
1 TTGCGATCTTAAATCAGCTAA-CTTAATAAAAT-TGTTCTTGATCTTAAATCGA-ATGAACTT-A
13842820 GAG
62 G-G
* * * *
13842823 TTGTGATCTTAAATTAGCTAACTCAAATAAAATTGTTCATGAT
1 TTGCGATCTTAAATCAGCTAACT-TAATAAAATTGTTCTTGAT
13842866 AGATAAAATA
Statistics
Matches: 475, Mismatches: 106, Indels: 103
0.69 0.15 0.15
Matches are distributed among these distances:
61 1 0.00
62 7 0.01
63 9 0.02
64 178 0.37
65 49 0.10
66 49 0.10
67 167 0.35
68 8 0.02
69 6 0.01
70 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (63 bp):
TTGCGATCTTAAATCAGCTAACTTAATAAAATTGTTCTTGATCTTAAATCGAATGAACTTAGG
Found at i:13842354 original size:131 final size:131
Alignment explanation
Indices: 13842073--13842865 Score: 937
Period size: 131 Copynumber: 6.1 Consensus size: 131
13842063 AGTGAGATTA
* * * * * *
13842073 TTCATGATCTTAAATC-AAGTGGACTTTGGTTGCAATCTTGAATCATCTAACCTTAATAATATTA
1 TTCATGATCTTAAATCGAA-TGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCA
** * ** * ** * *
13842137 ACTGCGATCTTAAATCA-AAAGTTCTTCAAAATTGCGATCTTAAATCAGCTAACTCAAATAAAAT
65 GTTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAAT
13842201 TG
130 TG
* * * **
13842203 TTCTTGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAACCAACTAAACTTAATAATATTGG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * * * *
13842268 TTGTGATCTTAAATCAGTGAGTTGTTTGGAGTTGCAATTTTAAATCAGCTAACTCGAATAAATTT
66 TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAATT
13842333 G
131 G
* *
13842334 TTCATGATCTTAAATTGAATGAACTTAGGTTGGGATCTTAAATCAACTAACCTTAATAATATC-G
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * ** * *
13842398 ATTGTGATCTTAAATTAGTGAGTTATTTAGAGTTACGATATTAAATCAGCTAACTCGAATAAAAT
66 -TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAAT
13842463 TG
130 TG
* * * * *
13842465 TTCTTCG-TCTTAAATCAAAAGAACTTAGGTTGCGATATTAAATCAGCTAACCTTAATAATATCA
1 TTCAT-GATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCA
* * * *
13842529 GTTTTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATTAGCTAACTCAAACAAATT
65 GTTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAAT
13842594 TG
130 TG
* *
13842596 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCCTAAATCAACTAACCTTAATAATATTAG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * * * * * *
13842661 TTGCGATCTTAAATAAGCAAGTTATTCGGAGTTACGATCTTAAGTTAGCTAACTCAAATAAAATT
66 TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAATT
13842726 G
131 G
* * * **
13842727 TTCATGATTTTAAATTGAGTGAACTTAGGTTGCGATCTTAAATCAGTTAACCTTAATAATATCAG
1 TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
* * * * * *
13842792 TTGTGATCTTAAATCAACAAGTTGTTCAGAGTTGTGATCTTAAATTAGCTAACTCAAATAAAATT
66 TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAATT
13842857 G
131 G
13842858 TTCATGAT
1 TTCATGAT
13842866 AGATAAAATA
Statistics
Matches: 571, Mismatches: 86, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
130 68 0.12
131 501 0.88
132 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (131 bp):
TTCATGATCTTAAATCGAATGAACTTAGGTTGCGATCTTAAATCAACTAACCTTAATAATATCAG
TTGTGATCTTAAATCAGCGAGTTGTTCGGAGTTGCGATATTAAATCAGCTAACTCAAATAAAATT
G
Found at i:13846612 original size:2 final size:2
Alignment explanation
Indices: 13846605--13846630 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13846595 AACTTGTTGC
13846605 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13846631 CATAGTACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13847664 original size:19 final size:19
Alignment explanation
Indices: 13847620--13847664 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
13847610 CTGAGAGATG
13847620 AATAATTTGCAAATAAAAA
1 AATAATTTGCAAATAAAAA
*
13847639 GAT-ATTTG-AAATGAAAAA
1 AATAATTTGCAAAT-AAAAA
13847657 AATAATTT
1 AATAATTT
13847665 CATACCTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (19 bp):
AATAATTTGCAAATAAAAA
Found at i:13850141 original size:96 final size:96
Alignment explanation
Indices: 13849973--13850163 Score: 337
Period size: 96 Copynumber: 2.0 Consensus size: 96
13849963 CAAAAAGTTG
*
13849973 CGATCATTATCTTAGCCATTCTCATGTTAAGGCGTATTATAGGCCATTGGATGGTCTACCAAAAA
1 CGATCATTATCTTAGCCATTCTCATGTTAAGGCGTATTATAGGCCATTAGATGGTCTACCAAAAA
*
13850038 TAGCCGAACATATTCTATTGTAGTGTGTTTA
66 TAACCGAACATATTCTATTGTAGTGTGTTTA
* *
13850069 CGATCATTATCTTAGCCATTCTCATGTTAAGGCGTATTATTGGCCATTAGATGGTCTACCACAAA
1 CGATCATTATCTTAGCCATTCTCATGTTAAGGCGTATTATAGGCCATTAGATGGTCTACCAAAAA
*
13850134 TAACCGAACATATTCTATTGTGGTGTGTTT
66 TAACCGAACATATTCTATTGTAGTGTGTTT
13850164 GCCATCCCCC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 90 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (96 bp):
CGATCATTATCTTAGCCATTCTCATGTTAAGGCGTATTATAGGCCATTAGATGGTCTACCAAAAA
TAACCGAACATATTCTATTGTAGTGTGTTTA
Found at i:13850653 original size:26 final size:26
Alignment explanation
Indices: 13850624--13850733 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
13850614 TGATATAAAT
13850624 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
13850650 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13850676 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
13850702 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13850728 TGATAA
1 TGATAA
13850734 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13852249 original size:25 final size:26
Alignment explanation
Indices: 13852207--13852258 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
13852197 TTTACAGTTT
13852207 TACCCCTAGGAGATAATT-ACCGAAA
1 TACCCCTAGGAGATAATTGACCGAAA
* *
13852232 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGAT-AATTGACCGAAA
13852258 T
1 T
13852259 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 14 0.61
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGAGATAATTGACCGAAA
Found at i:13852773 original size:135 final size:136
Alignment explanation
Indices: 13852506--13852789 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
13852496 GAGTAGTCTC
13852506 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCATACT
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCATACT
13852571 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
13852636 CTGTTA
131 CTGTTA
*
13852642 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGG-CATAC
*
13852706 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCTAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13852770 ACTGTTA
130 ACTGTTA
**
13852777 CCTGAATGGGCTT
1 CCCAAATGGGCTT
13852790 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 78 0.55
136 65 0.45
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:13856579 original size:25 final size:25
Alignment explanation
Indices: 13856550--13856656 Score: 178
Period size: 25 Copynumber: 4.2 Consensus size: 25
13856540 TGATACAAAT
13856550 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
13856575 TGATAATGGTTAGGTAAATATTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
13856600 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
13856626 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
13856651 TGATAA
1 TGATAA
13856657 GAATTTCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 55 0.71
26 23 0.29
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:13856612 original size:51 final size:50
Alignment explanation
Indices: 13856550--13856656 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 50
13856540 TGATACAAAT
13856550 TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
* * *
13856600 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
13856651 TGATAA
1 TGATAA
13856657 GAATTTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
50 7 0.13
51 46 0.87
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (50 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
Found at i:13858175 original size:25 final size:26
Alignment explanation
Indices: 13858133--13858184 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
13858123 TTTACAGTTT
13858133 TACCCCTAGGAGATAATT-ACCGAAA
1 TACCCCTAGGAGATAATTGACCGAAA
* *
13858158 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGAT-AATTGACCGAAA
13858184 T
1 T
13858185 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 14 0.61
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGAGATAATTGACCGAAA
Found at i:13858676 original size:135 final size:136
Alignment explanation
Indices: 13858432--13858715 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
13858422 GAGTAGTCTC
13858432 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
13858497 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
13858562 CTGTTA
131 CTGTTA
*
13858568 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
13858632 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13858696 ACTGTTA
130 ACTGTTA
**
13858703 CCTGAATGGGCTT
1 CCCAAATGGGCTT
13858716 AGGCCCAATA
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
135 98 0.69
136 45 0.31
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:13871143 original size:11 final size:12
Alignment explanation
Indices: 13871116--13871148 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13871106 TGAGGGAAGA
*
13871116 AAAAAGAAAAAG
1 AAAAAGAGAAAG
13871128 AAAAAGAGAAAG
1 AAAAAGAGAAAG
13871140 -AAAAGAGAA
1 AAAAAGAGAA
13871149 GGAGAAGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:13871613 original size:14 final size:14
Alignment explanation
Indices: 13871594--13871622 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13871584 AACTTAATAG
13871594 TATATTTTAAAAAA
1 TATATTTTAAAAAA
13871608 TATATTTTAAAAAA
1 TATATTTTAAAAAA
13871622 T
1 T
13871623 CTAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATTTTAAAAAA
Found at i:13872183 original size:30 final size:29
Alignment explanation
Indices: 13872147--13872203 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
13872137 TAAAATAATA
13872147 TAAAAAACAAAATAC-GAAAATAATAAATTT
1 TAAAAAACAAAAT-CTGAAAATAA-AAATTT
*
13872177 TAAAAAATAAAATCTGAAAATAAAAAT
1 TAAAAAACAAAATCTGAAAATAAAAAT
13872204 AAAAAAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.68, C:0.05, G:0.04, T:0.23
Consensus pattern (29 bp):
TAAAAAACAAAATCTGAAAATAAAAATTT
Found at i:13872597 original size:25 final size:25
Alignment explanation
Indices: 13872569--13872643 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 25
13872559 ATTATGTACT
13872569 AAAATAATATAAAAAATAAAATACG
1 AAAATAATATAAAAAATAAAATACG
*
13872594 AAAATAGTATATTTTAAAAAATAAAATCCG
1 AAAATA--ATA---TAAAAAATAAAATACG
*
13872624 AAAATAAAATAAAAAATAAA
1 AAAATAATATAAAAAATAAA
13872644 CGGCCAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
25 17 0.40
27 3 0.07
28 2 0.05
30 21 0.49
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATACG
Found at i:13872685 original size:148 final size:146
Alignment explanation
Indices: 13871626--13872935 Score: 1906
Period size: 145 Copynumber: 9.1 Consensus size: 146
13871616 AAAAAATCTA
* * *
13871626 AAAATAAAAT--AAAAAAA-GGTCAAAATCAGAGTTTTTTACTAAATTAATATAAATATACTAAA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAA
*
13871688 ATAATACATATGAAACATTATGTACTAAAAT-A-ATAAAAAATAAAATACGAAAATAGTATATTT
66 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
* *
13871751 TGAAAAATAAAATTCG
131 TAAAAAATAAAATCCG
* *
13871767 AAAATAAAATAAAAAACAAACGGCCAAAATTAGAATTTTTTACTAAATTAATATAAAAAAACTAA
1 AAAATAAAATAAAAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAA
13871832 AATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATAT
65 AATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGTATAT
13871897 TTTAAAAAATAAAATCCG
129 TTTAAAAAATAAAATCCG
* * * *
13871915 AAAACAAAAT-AAAAAAAA-GACCAAAATCACAGATTTTTACTAAATTAATAT-AAAAAACTAAA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAA
* *
13871977 ATAATACA--TGAAACATTATGTACTAAAATAATAT----AA-AAAATACGAAAATAATATATCT
66 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
13872035 TAAAAAATAAAATCCG
131 TAAAAAATAAAATCCG
* * *
13872051 AAAAT--AA-AAATAAAAAGGGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAAAAAACTAA
* * * *
13872113 AGTAATACA--TGAAACATTATGTACTAAAATAATATAAAAAACAAAATACGAAAATAATAAATT
65 AATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATT
*
13872176 TTAAAAAATAAAATCTG
130 TTAAAAAATAAAATCCG
* *
13872193 AAAATAAAA-ATAAAAAAA-GGCCAAAATCAGAGCTTTTT-CTAAATTAATAT-AAAAAACTAAA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAA
13872254 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACGAAAATAGTATATT
66 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAA-AATAAAATACGAAAATAGTATATT
13872319 TTAAAAAATAAAATCCG
130 TTAAAAAATAAAATCCG
* * *
13872336 AAAATAAAAT-AAATAAAACGGCCAAAATCATAGATTTTTACTAAATTAATATAAAAAAACTAAA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAA
*
13872400 ATAATACA--TGAAACATTATGTTCTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
66 ATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
13872463 TAAAAAATAAAATCCG
131 TAAAAAATAAAATCCG
* * * *
13872479 AAAAT-AAA-AAATAAAAAGGGCCAAAATCAGAGTTTTTTTTTCTAAATTAATAT-AAAAAATTA
1 AAAATAAAATAAAAAAAAACGGCCAAAATCAGAG--TTTTTTACTAAATTAATATAAAAAAACTA
* *
13872541 AAATAATATATTTGATACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATAT
64 AAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATAT
13872606 TTTAAAAAATAAAATCCG
129 TTTAAAAAATAAAATCCG
*
13872624 AAAATAAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAAAACTA
1 AAAATAAAATAAAAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAAAACTA
13872689 AAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATAT
64 AAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATAT
* *
13872754 TTTAAAAAGTAAAATTCG
129 TTTAAAAAATAAAATCCG
* *
13872772 AAAATAAAATAAAAAAACAAACGGTCAAAATCAGAGTTTTTTATTAAATTAATATAAAAATAATA
1 AAAATAAAAT-AAAAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAA-AA-A
* * *
13872837 CAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAATATACGAAAATAATA
61 CTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTA
*
13872902 TATTTTAAAAAATAAAATCTG
126 TATTTTAAAAAATAAAATCCG
13872923 AAAATAAAATAAA
1 AAAATAAAATAAA
13872936 TACCAAAATA
Statistics
Matches: 1065, Mismatches: 66, Indels: 67
0.89 0.06 0.06
Matches are distributed among these distances:
134 9 0.01
135 12 0.01
136 57 0.05
137 46 0.04
140 18 0.02
141 24 0.02
142 123 0.12
143 133 0.12
144 95 0.09
145 184 0.17
146 43 0.04
147 12 0.01
148 166 0.16
149 47 0.04
150 5 0.00
151 91 0.09
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (146 bp):
AAAATAAAATAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAA
ATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
TAAAAAATAAAATCCG
Found at i:13872885 original size:12 final size:13
Alignment explanation
Indices: 13872868--13872903 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
13872858 ATTATGTACT
13872868 AAAATAATATA-A
1 AAAATAATATACA
*
13872880 AAAATAATATACG
1 AAAATAATATACA
13872893 AAAATAATATA
1 AAAATAATATA
13872904 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:13877025 original size:32 final size:32
Alignment explanation
Indices: 13876984--13877047 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
13876974 CAGCCATACG
13876984 TGTATCCACTAGTTAACAGGTGATAAAATTTA
1 TGTATCCACTAGTTAACAGGTGATAAAATTTA
13877016 TGTATCCACTAGTTAACAGGTGATAAAATTTA
1 TGTATCCACTAGTTAACAGGTGATAAAATTTA
13877048 ACTTGTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (32 bp):
TGTATCCACTAGTTAACAGGTGATAAAATTTA
Found at i:13886025 original size:46 final size:46
Alignment explanation
Indices: 13885972--13886100 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
13885962 TATTTGGGCA
* *
13885972 TCCGAACTCGTCGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
13886018 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
13886064 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13886101 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:13891500 original size:71 final size:71
Alignment explanation
Indices: 13891422--13891562 Score: 210
Period size: 71 Copynumber: 2.0 Consensus size: 71
13891412 GGATATTTGG
* *
13891422 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
13891487 TGAGTC
66 TGAGTC
* ** * * *
13891493 GCATCCGAGCTCGTTGAGTTGAGTCTTAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
13891558 TGAGT
66 TGAGT
13891563 TCGAGTTCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (71 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTC
Found at i:13893311 original size:27 final size:27
Alignment explanation
Indices: 13893273--13893330 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
13893263 GAGAAAGGCA
* *
13893273 CCACTGTTGCCGCCTATGGGGTACCCT
1 CCACTGGTGCCGCCTATAGGGTACCCT
*
13893300 CCACTGGTGCCGCCTGTAGGGTACCCT
1 CCACTGGTGCCGCCTATAGGGTACCCT
13893327 CCAC
1 CCAC
13893331 CCTTATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.12, C:0.40, G:0.26, T:0.22
Consensus pattern (27 bp):
CCACTGGTGCCGCCTATAGGGTACCCT
Found at i:13897400 original size:18 final size:18
Alignment explanation
Indices: 13897377--13897414 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13897367 ATTTATATTA
13897377 AATAAAAATTAAAATAAT
1 AATAAAAATTAAAATAAT
**
13897395 AATAAAGGTTAAAATAAT
1 AATAAAAATTAAAATAAT
13897413 AA
1 AA
13897415 CATAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
AATAAAAATTAAAATAAT
Found at i:13899466 original size:36 final size:36
Alignment explanation
Indices: 13899419--13899490 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
13899409 GTGTAAAGTG
*
13899419 GATCGTCAAGAAGCTCACATTATCTCGGTATTGATT
1 GATCGTCAAGAAGCTCACATTATCCCGGTATTGATT
13899455 GATCGTCAAGAAGCTCACATTATCCCGGTATTGATT
1 GATCGTCAAGAAGCTCACATTATCCCGGTATTGATT
13899491 CTATAGTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (36 bp):
GATCGTCAAGAAGCTCACATTATCCCGGTATTGATT
Found at i:13902634 original size:18 final size:18
Alignment explanation
Indices: 13902592--13902627 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13902582 TCCTTTATAC
13902592 GAGCTTACTAAGTATTGG
1 GAGCTTACTAAGTATTGG
13902610 GAGCTTACTAAGTATTGG
1 GAGCTTACTAAGTATTGG
13902628 TTGCTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (18 bp):
GAGCTTACTAAGTATTGG
Found at i:13903481 original size:18 final size:18
Alignment explanation
Indices: 13903443--13903481 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
13903433 TGATCCCCTG
13903443 TTTCCAAAATTTTCAATT
1 TTTCCAAAATTTTCAATT
*
13903461 TTTCCTAAAATTTTCTATT
1 TTTCC-AAAATTTTCAATT
13903480 TT
1 TT
13903482 GTTTCTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTCCAAAATTTTCAATT
Found at i:13906753 original size:19 final size:19
Alignment explanation
Indices: 13906709--13906759 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
13906699 TTTTAATTTA
13906709 TTATTT-AAATTATTAAAT
1 TTATTTAAAATTATTAAAT
* *
13906727 ATAATTAAAATATATT-AAT
1 TTATTTAAAAT-TATTAAAT
13906746 TTATTTAACAATTA
1 TTATTTAA-AATTA
13906760 AATGTAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 4 0.15
19 15 0.58
20 7 0.27
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATTTAAAATTATTAAAT
Found at i:13907199 original size:21 final size:20
Alignment explanation
Indices: 13907173--13907211 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
13907163 AAATTATGCA
13907173 AAGTAAAAAATAATTAATACT
1 AAGTAAAAAATAA-TAATACT
13907194 AAGTAAAAAATAATAATA
1 AAGTAAAAAATAATAATA
13907212 TATTGTTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.26
Consensus pattern (20 bp):
AAGTAAAAAATAATAATACT
Found at i:13908264 original size:17 final size:16
Alignment explanation
Indices: 13908238--13908279 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
13908228 CCAAGGCGAA
13908238 GAAAAAAATTATTTTTC
1 GAAAAAAATT-TTTTTC
*
13908255 GAAAATAATTTTTTT-
1 GAAAAAAATTTTTTTC
*
13908270 TAAAAAAATT
1 GAAAAAAATT
13908280 AAATAAATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 8 0.36
16 5 0.23
17 9 0.41
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (16 bp):
GAAAAAAATTTTTTTC
Found at i:13908660 original size:79 final size:79
Alignment explanation
Indices: 13908529--13908792 Score: 402
Period size: 79 Copynumber: 3.3 Consensus size: 79
13908519 AATTAAAGGT
** * *
13908529 AAATAAAATCCGTTTCGGGATTGATTCCCGTCGTTTAACGATTTTATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCACCGTTCAACAATTTTATTCCAAATTTTGTTTTATT
*
13908594 TCTAAAAAAGAGTA
66 TCCAAAAAAGAGTA
*
13908608 AAATAAAATCCGTTTCGGGATTAATTCCCACCGTTCAACAATTTTATTCCAAATTTTGTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCACCGTTCAACAATTTTATTCCAAATTTTGTTTTATT
**
13908673 TCCAAAAGCGAGTA
66 TCCAAAAAAGAGTA
* * * *
13908687 AAATAAAATCTGTTTCGGGATTGATTTCCACGGTTCAACAATTTTATTCCAAATTTTTTTTTATT
1 AAATAAAATCCGTTTCGGGATTGATTCCCACCGTTCAACAATTTTATTCCAAATTTTGTTTTATT
13908752 TCCAAAAAAGAGTA
66 TCCAAAAAAGAGTA
* *
13908766 AAATAAAACCCATTTCGGGATTGATTC
1 AAATAAAATCCGTTTCGGGATTGATTC
13908793 TCGTTGTTCA
Statistics
Matches: 166, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 166 1.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.38
Consensus pattern (79 bp):
AAATAAAATCCGTTTCGGGATTGATTCCCACCGTTCAACAATTTTATTCCAAATTTTGTTTTATT
TCCAAAAAAGAGTA
Found at i:13908705 original size:158 final size:164
Alignment explanation
Indices: 13908413--13908792 Score: 436
Period size: 158 Copynumber: 2.3 Consensus size: 164
13908403 AAAGATTTTA
* * * * *
13908413 TTTGATTTTGTTTCTAAAATTAAAAGT-AAATAAAATCCGTTTTGGGATTTATTCCCGCCGTTCA
1 TTTG-TTTTATTTCTAAAA--AAGAGTAAAATAAAATCCGTTTCGGGATTAATTCCCACCGTTCA
* * * * *
13908477 ACAGATTTTATCCCATTAGTTTGATTTTATTTGCAAACGGGAAATTAAAGGTAAATAAAATCCGT
63 ACAGATTTTATCCCATAAGTTTGATTTTATTTCCAAAAGCG-AAGT-AA-G-AAATAAAATCCGT
* *
13908542 TTCGGGATTGA-TTCC-CGTCGTTTAACGATTTTATTCCAAAT
124 TTCGGGATTGATTTCCACG--GTTCAACAATTTTATTCCAAAT
13908583 TTTGTTTTATTTCTAAAAAAGAGTAAAATAAAATCCGTTTCGGGATTAATTCCCACCGTTCAACA
1 TTTGTTTTATTTCTAAAAAAGAGTAAAATAAAATCCGTTTCGGGATTAATTCCCACCGTTCAACA
* * *
13908648 -ATTTTATTCCA-AATTTTG-TTTTATTTCCAAAAGCG-AGT-A-AAATAAAATCTGTTTCGGGA
66 GATTTTATCCCATAAGTTTGATTTTATTTCCAAAAGCGAAGTAAGAAATAAAATCCGTTTCGGGA
13908707 TTGATTTCCACGGTTCAACAATTTTATTCCAAAT
131 TTGATTTCCACGGTTCAACAATTTTATTCCAAAT
* * * * *
13908741 TTTTTTTTATTTCCAAAAAAGAGTAAAATAAAACCCATTTCGGGATTGATTC
1 TTTGTTTTATTTCTAAAAAAGAGTAAAATAAAATCCGTTTCGGGATTAATTC
13908793 TCGTTGTTCA
Statistics
Matches: 187, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
158 90 0.48
159 4 0.02
160 2 0.01
161 1 0.01
163 2 0.01
165 14 0.07
166 5 0.03
167 15 0.08
168 37 0.20
169 13 0.07
170 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (164 bp):
TTTGTTTTATTTCTAAAAAAGAGTAAAATAAAATCCGTTTCGGGATTAATTCCCACCGTTCAACA
GATTTTATCCCATAAGTTTGATTTTATTTCCAAAAGCGAAGTAAGAAATAAAATCCGTTTCGGGA
TTGATTTCCACGGTTCAACAATTTTATTCCAAAT
Found at i:13908912 original size:86 final size:86
Alignment explanation
Indices: 13908806--13909172 Score: 366
Period size: 86 Copynumber: 4.3 Consensus size: 86
13908796 TTGTTCAACG
** * * *
13908806 GATTTATTACATTTTGATTTTGCTGTAAAAAATGAGAAATTAAATAAAATAAAATCTGTTTCGGG
1 GATTTATTTGATTTT-ATTTTGTTGTAAAAAACGAGAAATTAAATTAAATAAAATCTGTTTCGGG
13908871 ATTTATTCCTGCCGTTTAATAA
65 ATTTATTCCTGCCGTTTAATAA
* * *
13908893 GATTTATTTGATTTTATTTTGTTGTCAAAAACGAGAAATTAAATTAAATAAAATCTATTTCAGGA
1 GATTTATTTGATTTTATTTTGTTGTAAAAAACGAGAAATTAAATTAAATAAAATCTGTTTCGGGA
*
13908958 TTTATTCTTGCCGTTTAATAA
66 TTTATTCCTGCCGTTTAATAA
* * ** * *
13908979 GATTTATTTGATTTGAGTTTGTTACAAAAAACGAGAAATTAAATTAAATAAAATATGTTTCGAGA
1 GATTTATTTGATTTTATTTTGTTGTAAAAAACGAGAAATTAAATTAAATAAAATCTGTTTCGGGA
** *
13909044 TTTATT-CTCGTTGTTTAACAA
66 TTTATTCCT-GCCGTTTAATAA
* * ** * * * *
13909065 GATTTTATTTTATTTTATTTTGTT-TCCAAATTC---TAATTGAATTAAATAAAATTTGTTTTGG
1 GA-TTTATTTGATTTTATTTTGTTGT-AAAAAACGAGAAATTAAATTAAATAAAATCTGTTTCGG
* * *
13909126 GATTTATTACTGCCGTTTAACAG
64 GATTTATTCCTGCCGTTTAATAA
* * *
13909149 GATTTTATTCGATATTGTTTTGTT
1 GA-TTTATTTGATTTTATTTTGTT
13909173 TCCAAACAAA
Statistics
Matches: 235, Mismatches: 41, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
84 60 0.26
85 3 0.01
86 137 0.58
87 35 0.15
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (86 bp):
GATTTATTTGATTTTATTTTGTTGTAAAAAACGAGAAATTAAATTAAATAAAATCTGTTTCGGGA
TTTATTCCTGCCGTTTAATAA
Found at i:13912776 original size:23 final size:21
Alignment explanation
Indices: 13912734--13912785 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 21
13912724 ATGCCAAGTA
*
13912734 AAAAATAATTAATACTTAGTG
1 AAAAATAATAAATACTTAGTG
* *
13912755 AAAAATAATAATATATTGTAGTT
1 AAAAATAATAA-ATACT-TAGTG
13912778 AAAAATAA
1 AAAAATAA
13912786 AATTATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 10 0.38
22 4 0.15
23 12 0.46
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.33
Consensus pattern (21 bp):
AAAAATAATAAATACTTAGTG
Found at i:13913648 original size:26 final size:26
Alignment explanation
Indices: 13913612--13913721 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
13913602 TGATACAAAT
*
13913612 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
13913638 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
13913664 TGATAATTGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
13913690 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
13913716 TGATAA
1 TGATAA
13913722 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:13915783 original size:137 final size:137
Alignment explanation
Indices: 13915500--13915775 Score: 534
Period size: 137 Copynumber: 2.0 Consensus size: 137
13915490 GAGTAGTCTC
*
13915500 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
13915565 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13915630 ACTGTTA
131 ACTGTTA
13915637 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
*
13915702 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
13915767 ACTGTTA
131 ACTGTTA
13915774 CC
1 CC
13915776 TGAATGGGTT
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:13917894 original size:15 final size:14
Alignment explanation
Indices: 13917874--13917913 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
13917864 TTAAATTAGC
13917874 TCAATTTTTTTACTA
1 TCAATTTTTTTAC-A
13917889 TCAA-TTTTTTACA
1 TCAATTTTTTTACA
13917902 TCAATTTTTTTA
1 TCAATTTTTTTA
13917914 TAATACGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.21
14 15 0.62
15 4 0.17
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (14 bp):
TCAATTTTTTTACA
Found at i:13917904 original size:13 final size:14
Alignment explanation
Indices: 13917874--13917911 Score: 60
Period size: 13 Copynumber: 2.7 Consensus size: 14
13917864 TTAAATTAGC
13917874 TCAATTTTTTTACTA
1 TCAA-TTTTTTACTA
13917889 TCAATTTTTTAC-A
1 TCAATTTTTTACTA
13917902 TCAATTTTTT
1 TCAATTTTTT
13917912 TATAATACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.48
14 8 0.35
15 4 0.17
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61
Consensus pattern (14 bp):
TCAATTTTTTACTA
Found at i:13918157 original size:26 final size:26
Alignment explanation
Indices: 13918104--13918153 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
13918094 ATAATTATTT
*
13918104 TTAAATATGTAATTATCACAACTTTA
1 TTAAATATATAATTATCACAACTTTA
13918130 TTAAAT-TATAATTATC-CTAACTTT
1 TTAAATATATAATTATCAC-AACTTT
13918154 TATTTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 15 0.68
26 6 0.27
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (26 bp):
TTAAATATATAATTATCACAACTTTA
Found at i:13920486 original size:12 final size:11
Alignment explanation
Indices: 13920452--13920505 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 11
13920442 AACTTTAAAT
13920452 TTATTATTATTA
1 TTATT-TTATTA
*
13920464 TTATTGCTATTA
1 TTATT-TTATTA
13920476 TTCATTTTATTA
1 TT-ATTTTATTA
13920488 GTTATTTTATT-
1 -TTATTTTATTA
13920499 TTATTTT
1 TTATTTT
13920506 TCTTTGATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.19
12 25 0.68
13 5 0.14
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:13924869 original size:44 final size:44
Alignment explanation
Indices: 13924776--13925698 Score: 405
Period size: 44 Copynumber: 20.2 Consensus size: 44
13924766 AATCCTATAC
*
13924776 CCCTGAAGTTACAGTGG-GACAGATTGAAG-T-C--ATCTTATCT
1 CCCTGAAGTTGCAGTGGAG-CAGATTGAAGCTACAAATCTTATCT
* * *
13924816 CCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
13924860 CCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGTAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * * * * * * * *
13924905 CTCTAAAATTGTAGTAGAGCAGATTAAAGTTATAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
13924949 CCCTGAAGTTACAGTGGAGCA-AGTCGAAGTTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCTACAAATCTTATCT
* * * * * *
13924993 CCCTGAAGTAGCAGTGGAGCAAACTGAAGATAGAGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA-AATCTTATCT
* * * *
13925038 CCCTGAAGTTACAGTGGAACATATTAAAGCTACAAATTACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG---C----TACAAATCTTATCT
* * * * * *
13925089 CCCTGAAGTTACAGTGGAGTAAATTAAAGTTACAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * * **
13925133 CCCTAAAGTTGCAATGGAGTAGATCGAATATAGCAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CAAATCTTATCT
* * * * *
13925178 CTCTAAAGCTACAGTTGAGCAGATTGAAGCTACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * *
13925222 CCTTGAAGTTGCAGTGGAACAGATTGAAGCTACTAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * * * * * *
13925266 CCATGAAGTTGCAATGGAGTAGATTGAAACAATAAGTCCTATAC-
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTAT-CT
* * * * * * * *
13925310 CTCTAAAGTTGCACTAGG-TCGGATTAAATCTACCATAGCAAGTCTAATCT
1 CCCTGAAGTTGCAGT-GGAGCAGATTGAAGCTA-C--A--AA-TCTTATCT
* * * ** *
13925360 CCTTAAAGTTGCAGTGGAATGACTAAAGCTACAAGCTATAAATCTTATCT
1 CCCTGAAGTTGCAGTGG-A-G-C---AGATTGAAGCTACAAATCTTATCT
* * * *** * *
13925410 CCCTAAAGTTGCAGTGGAGTAGATTGAAGATGTTAATATTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
13925454 CCCTAAAGTTGCAATGGA--ATGAATTAAAGCTACAAGTTATAAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCA-G-ATTGAAGCTAC-------AAATCTTATCT
* * * *
13925505 CCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATCTTATAT
1 CCCTGAAGTTGCAGTGGAGCAGATT---G----AAGCTACAAATCTTATCT
* * ** *** *
13925556 CCTTGAAGTTGCAGTGAAGCAGATTGAAAATGTGAATATTA-CTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATC-T
* * * *
13925600 CCCTGAAGTTACAGTAGAGTAGATTGAAGCTACTAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
* * * *
13925644 CCCTGAAGTTGTAGTGGAGCATATCGAAG-TGACAATTCTTATAC-
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACAAATCTTAT-CT
13925688 CCCTGAAGTTG
1 CCCTGAAGTTG
13925699 TAGGGTTAGA
Statistics
Matches: 662, Mismatches: 166, Indels: 106
0.71 0.18 0.11
Matches are distributed among these distances:
40 24 0.04
41 1 0.00
42 2 0.00
43 3 0.00
44 363 0.55
45 107 0.16
47 1 0.00
48 2 0.00
49 5 0.01
50 39 0.06
51 96 0.15
52 3 0.00
53 3 0.00
56 7 0.01
58 6 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCT
Found at i:13924946 original size:89 final size:89
Alignment explanation
Indices: 13924807--13925290 Score: 355
Period size: 89 Copynumber: 5.4 Consensus size: 89
13924797 GATTGAAGTC
* * * * *
13924807 ATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCACAAATCTTATCTCCCTAAAGTTGC
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGC
*
13924872 AGTGGAGTAGATTGAAGATAGTAA
66 AGTGGAGCAGATTGAAGATAGTAA
* * ** * * * * *
13924896 ATCTTATCTCTCTAAAATTGTAGTAGAGCAGATTAAAGTTATAAACCTTATCTCCCTGAAGTTAC
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGC
* * *
13924961 AGTGGAGCA-AGTCGAAGTTA-CAA
66 AGTGGAGCAGA-TTGAAGATAGTAA
* * * * * * * *
13924984 GTCTTATCTCCCTGAAG-TAGCAGTGGAGCAAACTGAAGATAGAGAATCTTATTTCCCTGAAGTT
1 ATCTTATCTCCCTAAAGTTA-CAGTGGAGCAGATTAAAGCTACA-AATCTTATCTCCCTGAAGTT
* * * * * *
13925048 ACAGTGGAACATATTAAAGCTACAAATTACAA
64 GCAGTGGAGCAGATTGAAG----ATAGT--AA
* * * * * *
13925080 ATCTTATCTCCCTGAAGTTACAGTGGAGTAAATTAAAGTTACAGATCTTATCTCCCTAAAGTTGC
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGC
* * * * *
13925145 AATGGAGTAGATCGAATATAGCAA
66 AGTGGAGCAGATTGAAGATAGTAA
* * * * *
13925169 ATCTTATCTCTCTAAAGCTACAGTTGAGCAGATTGAAGCTACAAATCTTATCTCCTTGAAGTTGC
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGC
* * *
13925234 AGTGGAACAGATTGAAGCTACT-A
66 AGTGGAGCAGATTGAAGATAGTAA
* * * * *
13925257 ATCTTATCTCCATGAAGTTGCAATGGAGTAGATT
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATT
13925291 GAAACAATAA
Statistics
Matches: 300, Mismatches: 83, Indels: 25
0.74 0.20 0.06
Matches are distributed among these distances:
87 1 0.00
88 59 0.20
89 170 0.57
90 1 0.00
91 2 0.01
93 1 0.00
95 28 0.09
96 36 0.12
97 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (89 bp):
ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATTGAAGATAGTAA
Found at i:13925064 original size:133 final size:132
Alignment explanation
Indices: 13924776--13925289 Score: 450
Period size: 133 Copynumber: 3.8 Consensus size: 132
13924766 AATCCTATAC
* * * * *
13924776 CCCTGAAGTTACAGTGGGACAGATTGAAG-T-C--ATCTTATCTCCCTGAAGTTGCAATGGAGCA
1 CCCTAAAGTTACAGTGGAACAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCA
* * * *
13924837 GATTAAAGCCACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGTAAATCTTA
66 GATTAAAGCTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGTAGA-TGAAGATAGCAAATCTTA
13924902 TCT
130 TCT
* * ** * * * *
13924905 CTCTAAAATTGTAGTAGAGCAGATTAAAGTTATAAACCTTATCTCCCTGAAGTTACAGTGGAGCA
1 CCCTAAAGTTACAGTGGAACAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCA
** * * * * * *
13924970 -AGTCGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAAACTGAAGATAG-AGAATCT
66 GA-TTAAAGCTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGTAGA-TGAAGATAGCA-AATCT
*
13925033 TATTT
128 TATCT
* *
13925038 CCCTGAAGTTACAGTGGAACATATTAAAGCTACAAATTACAAATCTTATCTCCCTGAAGTTACAG
1 CCCTAAAGTTACAGTGGAACAGATTAAAG-------TTACAAATCTTATCTCCCTGAAGTTACAG
* * * *
13925103 TGGAGTAAATTAAAGTTAC-AGATCTTATCTCCCTAAAGTTGCAATGGAGTAGATCGAATATAGC
59 TGGAGCAGATTAAAGCTACAAG-TCTTATCTCCCTAAAGTTGCAATGGAGTAGAT-GAAGATAGC
13925167 AAATCTTATCT
122 AAATCTTATCT
* * * * * * * * *
13925178 CTCTAAAGCTACAGTTGAGCAGATTGAAGCTACAAATCTTATCTCCTTGAAGTTGCAGTGGAACA
1 CCCTAAAGTTACAGTGGAACAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCA
* * *
13925243 GATTGAAGCTACTAA-TCTTATCTCCATGAAGTTGCAATGGAGTAGAT
66 GATTAAAGCTAC-AAGTCTTATCTCCCTAAAGTTGCAATGGAGTAGAT
13925290 TGAAACAATA
Statistics
Matches: 305, Mismatches: 61, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
129 20 0.07
130 1 0.00
132 2 0.01
133 171 0.56
135 1 0.00
139 3 0.01
140 105 0.34
141 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (132 bp):
CCCTAAAGTTACAGTGGAACAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCA
GATTAAAGCTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGTAGATGAAGATAGCAAATCTTAT
CT
Found at i:13925530 original size:51 final size:51
Alignment explanation
Indices: 13925448--13925571 Score: 185
Period size: 51 Copynumber: 2.4 Consensus size: 51
13925438 GATGTTAATA
* * ** *
13925448 TTATTTCCCTAAAGTTGCAATGGAATGAATTAAAGCTACAAGTTATAAATC
1 TTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATC
13925499 TTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATC
1 TTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATC
* *
13925550 TTATATCCTTGAAGTTGCAGTG
1 TTATTTCCCTGAAGTTGCAGTG
13925572 AAGCAGATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (51 bp):
TTATTTCCCTGAAGTTGCAGTGGAACAAATTAAAGCTACAAGTTACAAATC
Found at i:13927343 original size:12 final size:11
Alignment explanation
Indices: 13927323--13927363 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
13927313 TAAAATTTAG
13927323 ATTTTATTATT
1 ATTTTATTATT
13927334 ATTGTTATTATT
1 ATT-TTATTATT
13927346 CATTTTATTAGTT
1 -ATTTTATTA-TT
13927359 ATTTT
1 ATTTT
13927364 TTTTCTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.11
12 19 0.70
13 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (11 bp):
ATTTTATTATT
Found at i:13929830 original size:3 final size:3
Alignment explanation
Indices: 13929822--13929867 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
13929812 CTTAATTTAG
13929822 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
13929868 GAAATAAGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:13930651 original size:3 final size:3
Alignment explanation
Indices: 13930643--13930691 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
13930633 AAAAAGATAT
13930643 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13930691 T
1 T
13930692 ATATAAGAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13930777 original size:17 final size:15
Alignment explanation
Indices: 13930757--13930790 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
13930747 AGGGGAGAAA
13930757 GAAAGAAAGGAAAAAGG
1 GAAAGAAA-G-AAAAGG
13930774 GAAAGAAAGAAAAGG
1 GAAAGAAAGAAAAGG
13930789 GA
1 GA
13930791 GAAATAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
GAAAGAAAGAAAAGG
Found at i:13930794 original size:17 final size:18
Alignment explanation
Indices: 13930756--13930794 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
13930746 TAGGGGAGAA
13930756 AGAAAGAAAGGAAAAAGG
1 AGAAAGAAAGGAAAAAGG
*
13930774 -GAAAGAAA-GAAAAGGG
1 AGAAAGAAAGGAAAAAGG
13930790 AGAAA
1 AGAAA
13930795 TAGGGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAGGAAAAAGG
Found at i:13931622 original size:18 final size:18
Alignment explanation
Indices: 13931599--13931642 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
13931589 TAAATAAATG
*
13931599 TACTGAATAATTGATTGC
1 TACTGAATAATTGACTGC
* *
13931617 TACTGAATATTTGACTGT
1 TACTGAATAATTGACTGC
13931635 TACTGAAT
1 TACTGAAT
13931643 TACTAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (18 bp):
TACTGAATAATTGACTGC
Found at i:13931674 original size:17 final size:17
Alignment explanation
Indices: 13931632--13931675 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
13931622 AATATTTGAC
*
13931632 TGTTACTGAATTACTAAT
1 TGTTACTG-ATGACTAAT
* *
13931650 TATTACTGATGACTGAT
1 TGTTACTGATGACTAAT
13931667 TGTTACTGA
1 TGTTACTGA
13931676 AATGGATAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (17 bp):
TGTTACTGATGACTAAT
Found at i:13934037 original size:21 final size:23
Alignment explanation
Indices: 13934005--13934062 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
13933995 ATATATATAC
13934005 TTAATATATATTT-A-ATATATT
1 TTAATATATATTTAACATATATT
13934026 TTAAT-TATTATTTAACATATATT
1 TTAATATA-TATTTAACATATATT
*
13934049 TTAAAATTATATTT
1 TTAATA-TATATTT
13934063 TTTATTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.06
21 10 0.32
22 1 0.03
23 11 0.35
24 5 0.16
25 2 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTAATATATATTTAACATATATT
Found at i:13934048 original size:11 final size:11
Alignment explanation
Indices: 13933997--13934049 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
13933987 TAATTTTGAT
*
13933997 ATATATACTTA
1 ATATATATTTA
13934008 ATATATATTTA
1 ATATATATTTA
13934019 ATATAT-TTTA
1 ATATATATTTA
13934029 AT-TATTATTTA
1 ATATA-TATTTA
*
13934040 ACATATATTT
1 ATATATATTT
13934050 TAAAATTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 2 0.05
10 7 0.19
11 26 0.70
12 2 0.05
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (11 bp):
ATATATATTTA
Found at i:13935738 original size:14 final size:14
Alignment explanation
Indices: 13935719--13935745 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13935709 CAAAAACTTG
13935719 GCTGGGCTGTTTTT
1 GCTGGGCTGTTTTT
13935733 GCTGGGCTGTTTT
1 GCTGGGCTGTTTT
13935746 AGCATTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.37, T:0.48
Consensus pattern (14 bp):
GCTGGGCTGTTTTT
Found at i:13936725 original size:16 final size:14
Alignment explanation
Indices: 13936692--13936726 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
13936682 GTCAGCAAAA
13936692 GCGCGCTGACATGG
1 GCGCGCTGACATGG
*
13936706 GCGCGCTGACGTGG
1 GCGCGCTGACATGG
13936720 GCGCGCT
1 GCGCGCT
13936727 TTACCTCGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.09, C:0.31, G:0.46, T:0.14
Consensus pattern (14 bp):
GCGCGCTGACATGG
Found at i:13936928 original size:30 final size:30
Alignment explanation
Indices: 13936862--13936928 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
13936852 GTATTGTTCC
* *
13936862 GGAATAAATAAATTTGACAAGATGGGATAT
1 GGAAAAAATAAATTTGACAAGATGCGATAT
** * * *
13936892 AAAAAAAATAAATTTGACATGATGCGTTTT
1 GGAAAAAATAAATTTGACAAGATGCGATAT
13936922 GGAAAAA
1 GGAAAAA
13936929 TCATTTTGAC
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.27
Consensus pattern (30 bp):
GGAAAAAATAAATTTGACAAGATGCGATAT
Found at i:13937211 original size:152 final size:154
Alignment explanation
Indices: 13936996--13937467 Score: 607
Period size: 156 Copynumber: 3.1 Consensus size: 154
13936986 AACTTCCAGT
* * *
13936996 TGGACTTTTTTTTTACTGCTGATTCTGAAAAAATAATTTT--G-AGATGATTCTGAAAAAATATC
1 TGGACTTTTTTTGTACTGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATATC
* * * *
13937058 CTGGGATTC-CCAGGAAATTTGATAGTTGGGGTTGAAAAACGCTTCAAGTAGGATGTACTGTCAG
66 CTGGGATTCACGA-GAAATTTGATAGTTGGGGTTGAAAAACGCTTCAAGCAAGATGCACTGTCAG
***
13937122 CAAAAGTACTGAAAAAGCTTTTAGC
130 CAAAAGTACTGAAAAAGCTCACAGC
* *
13937147 TGGACTTTTTTTGTAC-GTTGATTCTG-AAAAATAATTTTGAGAAGATGGTTCTGCAAAAACATC
1 TGGACTTTTTTTGTACTGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATATC
* * *
13937210 CTGGGATTCTCGAGAAATTTGATCGTTGGAGTTGAAAAACGCTTCAAGCAAGATGCACTGTCAGC
66 CTGGGATTCACGAGAAATTTGATAGTTGGGGTTGAAAAACGCTTCAAGCAAGATGCACTGTCAGC
*
13937275 AAAAGTATTGAAAAAGCTCACAGC
131 AAAAGTACTGAAAAAGCTCACAGC
** *
13937299 TGGATGCTCATTTTGTACTGTTGATTCTGAAAAAATAATTTTGAGAATATGGTTCTGAAAAAATA
1 TGGA--CTTTTTTTGTACTGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATA
* * * *
13937364 T-CTCAGGATTCACGAAAAATCTGATAGTTGGGGTTGAAAAACGCTTCAAACAAGATGCACTGTC
64 TCCT-GGGATTCACGAGAAATTTGATAGTTGGGGTTGAAAAACGCTTCAAGCAAGATGCACTGTC
* * *
13937428 AGCAAAAGTACTAAAAAAGCTCCCAAC
128 AGCAAAAGTACTGAAAAAGCTCACAGC
13937455 TGGATGCTTTTTT
1 TGGA--CTTTTTT
13937468 CAATAGTGTT
Statistics
Matches: 279, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
149 12 0.04
150 9 0.03
151 16 0.06
152 98 0.35
153 2 0.01
154 10 0.04
155 12 0.04
156 120 0.43
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (154 bp):
TGGACTTTTTTTGTACTGTTGATTCTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATATC
CTGGGATTCACGAGAAATTTGATAGTTGGGGTTGAAAAACGCTTCAAGCAAGATGCACTGTCAGC
AAAAGTACTGAAAAAGCTCACAGC
Found at i:13940558 original size:59 final size:59
Alignment explanation
Indices: 13940475--13940641 Score: 264
Period size: 59 Copynumber: 2.8 Consensus size: 59
13940465 TAACTCCTAA
* *
13940475 TTTATTAAATGAAACAATGA-AAAAAAAATTTGTACAAACATATTCAAAATAACTTATAT
1 TTTATTAAATGAAACAAT-ATAAAAAAAATTTGTACAAAAATATTCAAAAGAACTTATAT
* * *
13940534 TTTATTAAATGAAACAATATAAAAATAATTTGTACAAAAATATTCAAAAGAACTTCTGT
1 TTTATTAAATGAAACAATATAAAAAAAATTTGTACAAAAATATTCAAAAGAACTTATAT
*
13940593 TTTATTAAATGAAACAATATAAAAAAAATTTGTACAAATATATTCAAAA
1 TTTATTAAATGAAACAATATAAAAAAAATTTGTACAAAAATATTCAAAA
13940642 ATAAATCAAT
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
58 1 0.01
59 99 0.99
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (59 bp):
TTTATTAAATGAAACAATATAAAAAAAATTTGTACAAAAATATTCAAAAGAACTTATAT
Found at i:13941035 original size:18 final size:18
Alignment explanation
Indices: 13941012--13941052 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
13941002 GAAAAAGGAA
13941012 ACATATAAAGGTTAGAAT
1 ACATATAAAGGTTAGAAT
*
13941030 ACATATAAGGGTTAGAAT
1 ACATATAAAGGTTAGAAT
13941048 ACATA
1 ACATA
13941053 CCTGGCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (18 bp):
ACATATAAAGGTTAGAAT
Found at i:13952258 original size:17 final size:17
Alignment explanation
Indices: 13952232--13952278 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
13952222 ATGAGAAATG
*
13952232 AAAACCAAAAGAAAGAA-
1 AAAACAAAAAGAAA-AAC
*
13952249 AAAACAAAAACAAAAAC
1 AAAACAAAAAGAAAAAC
*
13952266 AAAATAAAAAGAA
1 AAAACAAAAAGAA
13952279 GAAGCTGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.81, C:0.11, G:0.06, T:0.02
Consensus pattern (17 bp):
AAAACAAAAAGAAAAAC
Found at i:13959843 original size:18 final size:17
Alignment explanation
Indices: 13959800--13959844 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
13959790 TTAATAATCA
* *
13959800 AATTTAAATATATTTTT
1 AATTAAAATTTATTTTT
13959817 AATTAAAATTTATTTTAT
1 AATTAAAATTTATTTT-T
*
13959835 AATTGAAATT
1 AATTAAAATT
13959845 GCATCAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTAAAATTTATTTTT
Found at i:13962861 original size:43 final size:43
Alignment explanation
Indices: 13962770--13962921 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 43
13962760 GTCTGGGACG
* * * *
13962770 TGGTCTTACATG-TACTTCA-ATATCGATGCCTCTGTCCTAGACA
1 TGGTCTTACACGATATTTCAGATA-CGATGCCTATGTCC-CGACA
* *
13962813 GGGTCTTACACGATATTTCAGATACGATGTCTATGTCCCGACA
1 TGGTCTTACACGATATTTCAGATACGATGCCTATGTCCCGACA
* * * * ** *
13962856 TGGTCTTACACGTAAATCTCAAAT-CGAGGCCCGTGTCCCAAACA
1 TGGTCTTACACG-ATATTTCAGATACGATGCCTATGTCCC-GACA
13962900 -GGTCTTACACGATATTTCAGAT
1 TGGTCTTACACGATATTTCAGAT
13962922 TAATGTCAAC
Statistics
Matches: 87, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 8 0.09
43 47 0.54
44 29 0.33
45 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (43 bp):
TGGTCTTACACGATATTTCAGATACGATGCCTATGTCCCGACA
Found at i:13966042 original size:6 final size:6
Alignment explanation
Indices: 13966033--13966067 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
13966023 TTTTAATTTT
13966033 AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
13966068 CACTTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:13969637 original size:13 final size:13
Alignment explanation
Indices: 13969615--13969653 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
13969605 TGTTTCAAAC
* *
13969615 TTTTTTATTATTA
1 TTTTTAATTAATA
13969628 TTTTTAATTAATA
1 TTTTTAATTAATA
13969641 TTTTTAATTAATA
1 TTTTTAATTAATA
13969654 AATATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTAATTAATA
Found at i:13970394 original size:2 final size:2
Alignment explanation
Indices: 13970387--13970419 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13970377 ACAACGTGAA
13970387 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13970420 GGTAAGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13971048 original size:20 final size:20
Alignment explanation
Indices: 13971023--13971064 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
13971013 ATATATAATG
*
13971023 TAGAAAAATTTAAAATTTAT
1 TAGAAAAATTTAAAAATTAT
*
13971043 TAGAAAATTTTAAAAATTAT
1 TAGAAAAATTTAAAAATTAT
13971063 TA
1 TA
13971065 CAAATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
TAGAAAAATTTAAAAATTAT
Found at i:13971071 original size:10 final size:10
Alignment explanation
Indices: 13971032--13971073 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
13971022 GTAGAAAAAT
*
13971032 TTAAAATTTA
1 TTAAAAATTA
13971042 TTAGAAAATT-
1 TTA-AAAATTA
13971052 TTAAAAATTA
1 TTAAAAATTA
*
13971062 TTACAAATTA
1 TTAAAAATTA
13971072 TT
1 TT
13971074 TAGAAAATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 6 0.21
10 17 0.61
11 5 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:13971824 original size:18 final size:19
Alignment explanation
Indices: 13971800--13971843 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
13971790 TTATTTTCTA
13971800 AATTTTTATCTATTTTAAT
1 AATTTTTATCTATTTTAAT
*
13971819 -ATTTTTATTTATTTTAAT
1 AATTTTTATCTATTTTAAT
13971837 AATTTTT
1 AATTTTT
13971844 TGCTACACGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
AATTTTTATCTATTTTAAT
Found at i:13972296 original size:29 final size:29
Alignment explanation
Indices: 13972263--13972323 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
13972253 TTTTTTATGT
13972263 TTAAATTGAATATTCAAAATTAGTAAGAA
1 TTAAATTGAATATTCAAAATTAGTAAGAA
13972292 TTAAATTGAATATTCAAAATTAGTAAGAA
1 TTAAATTGAATATTCAAAATTAGTAAGAA
13972321 TTA
1 TTA
13972324 TTCTTAAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (29 bp):
TTAAATTGAATATTCAAAATTAGTAAGAA
Found at i:13977116 original size:46 final size:48
Alignment explanation
Indices: 13976962--13977220 Score: 193
Period size: 46 Copynumber: 5.5 Consensus size: 48
13976952 TTTGTGTGCT
** * *
13976962 AGTGTAAGA-CATGTCTGGGACATGCATCACCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCC
* * * * ** ** * *
13977008 AATCTAAGATCATGTCTGGGACATGTCATTGGTATTAAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGATGTAGAGCC
13977056 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
*
13977102 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT---GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
* * *
13977146 AGTGTAAGACCATGTCTAGGACAGGGCATCGGCACT-G-GTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGGC-CTCGAG-ATGT-AGAGCC
*
13977196 AGCGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
13977221 GCATTGGTGT
Statistics
Matches: 170, Mismatches: 29, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 70 0.41
47 31 0.18
48 19 0.11
49 2 0.01
50 22 0.13
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:13978755 original size:13 final size:13
Alignment explanation
Indices: 13978737--13978762 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13978727 GTTCACGCGA
13978737 ATTCGAATGCAAG
1 ATTCGAATGCAAG
13978750 ATTCGAATGCAAG
1 ATTCGAATGCAAG
13978763 GGGTCGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
ATTCGAATGCAAG
Found at i:13984001 original size:13 final size:13
Alignment explanation
Indices: 13983983--13984018 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
13983973 AGTCACATGC
13983983 CCGTGTGACTAGG
1 CCGTGTGACTAGG
13983996 CCGTGTGACTAGG
1 CCGTGTGACTAGG
13984009 CCGTGTGACT
1 CCGTGTGACT
13984019 CACACAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (13 bp):
CCGTGTGACTAGG
Found at i:13984441 original size:45 final size:45
Alignment explanation
Indices: 13984390--13984479 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
13984380 AATTCATATG
13984390 GCATAACATATATATACATAACAAACTAACCCAATCTAGCCTATA
1 GCATAACATATATATACATAACAAACTAACCCAATCTAGCCTATA
13984435 GCATAACATATATATACATAACAAACTAACCCAATCTAGCCTATA
1 GCATAACATATATATACATAACAAACTAACCCAATCTAGCCTATA
13984480 CATGCCATAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.24
Consensus pattern (45 bp):
GCATAACATATATATACATAACAAACTAACCCAATCTAGCCTATA
Found at i:13984998 original size:43 final size:40
Alignment explanation
Indices: 13984966--13985082 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 40
13984956 GTAATTCATT
* *
13984966 ATCGATGCCTCTGTCCCAGACAGGGTCTTACATAAAATCAA
1 ATCGATGCCTATGTCCCAGACAGGGTCTTACATAAATTC-A
*
13985007 ATACGATGCCGATGTCCCAGACAGGGTCTTATACATAAATCTCA
1 AT-CGATGCCTATGTCCCAGACAGGGTC-T-TACATAAAT-TCA
* * *
13985051 ATCGAGGCCTGTGTCCCAGACACGGTCTTACA
1 ATCGATGCCTATGTCCCAGACAGGGTCTTACA
13985083 CGATGTCTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 6 0.09
42 24 0.37
43 22 0.34
44 11 0.17
45 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
ATCGATGCCTATGTCCCAGACAGGGTCTTACATAAATTCA
Found at i:13985023 original size:42 final size:40
Alignment explanation
Indices: 13984966--13985082 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 40
13984956 GTAATTCATT
*
13984966 ATCGATGCCTCTGTCCCAGACAGGGTCTTACATAAAATC-AA
1 ATCGATGCC-GTGTCCCAGACAGGGTCTTACAT-AAATCTAA
*
13985007 ATACGATGCCGATGTCCCAGACAGGGTCTTATACATAAATCTCA
1 AT-CGATGCCG-TGTCCCAGACAGGGTC-T-TACATAAATCTAA
* *
13985051 ATCGAGGCCTGTGTCCCAGACACGGTCTTACA
1 ATCGATGCC-GTGTCCCAGACAGGGTCTTACA
13985083 CGATGTCTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
41 6 0.09
42 24 0.36
43 27 0.41
44 9 0.14
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
ATCGATGCCGTGTCCCAGACAGGGTCTTACATAAATCTAA
Found at i:13993490 original size:15 final size:15
Alignment explanation
Indices: 13993466--13993501 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
13993456 ACCATTTCCA
*
13993466 ATACTAGCAACCAAC
1 ATACTTGCAACCAAC
13993481 ATACTTGCAACCAAC
1 ATACTTGCAACCAAC
13993496 ATACTT
1 ATACTT
13993502 ATAAACTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.31, G:0.06, T:0.22
Consensus pattern (15 bp):
ATACTTGCAACCAAC
Found at i:13994767 original size:21 final size:21
Alignment explanation
Indices: 13994741--13994786 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
13994731 AAACTTACAC
13994741 TTTTGCCCCTAATAATTCACA
1 TTTTGCCCCTAATAATTCACA
*
13994762 TTTTGCCCCTAATAGTTCACA
1 TTTTGCCCCTAATAATTCACA
13994783 TTTT
1 TTTT
13994787 TCACAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (21 bp):
TTTTGCCCCTAATAATTCACA
Found at i:13995947 original size:11 final size:11
Alignment explanation
Indices: 13995933--13995986 Score: 65
Period size: 11 Copynumber: 4.7 Consensus size: 11
13995923 CTAAAAAATA
13995933 AAATAAAAAAG
1 AAATAAAAAAG
13995944 AAATAACAAAAG
1 AAATAA-AAAAG
*
13995956 AAAAAGAAAAAG
1 AAATA-AAAAAG
13995968 AAA-AGAAAAAG
1 AAATA-AAAAAG
13995979 AAATAAAA
1 AAATAAAA
13995987 CATAAAACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
11 20 0.51
12 18 0.46
13 1 0.03
ACGTcount: A:0.81, C:0.02, G:0.11, T:0.06
Consensus pattern (11 bp):
AAATAAAAAAG
Found at i:13995960 original size:6 final size:6
Alignment explanation
Indices: 13995938--13995981 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
13995928 AAATAAAATA
*
13995938 AAAAAG AAATAA- CAAAAG AAAAAG AAAAAG -AAAAG AAAAAG AAA
1 AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
13995982 TAAAACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 7 0.21
6 24 0.73
7 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:13995971 original size:17 final size:18
Alignment explanation
Indices: 13995938--13995984 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
13995928 AAATAAAATA
13995938 AAAAAGAAATAACAAAAG
1 AAAAAGAAATAACAAAAG
*
13995956 AAAAAGAAA-AAGAAAAG
1 AAAAAGAAATAACAAAAG
13995973 AAAAAGAAATAA
1 AAAAAGAAATAA
13995985 AACATAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.04
Consensus pattern (18 bp):
AAAAAGAAATAACAAAAG
Found at i:13995993 original size:17 final size:17
Alignment explanation
Indices: 13995928--13995986 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
13995918 TAAGCCTAAA
*
13995928 AAATAAAATA-AAAAAG
1 AAATAAAAAAGAAAAAG
13995944 AAATAACAAAAGAAAAAG
1 AAATAA-AAAAGAAAAAG
13995962 AAA-AAGAAAAGAAAAAG
1 AAATAA-AAAAGAAAAAG
13995979 AAATAAAA
1 AAATAAAA
13995987 CATAAAACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
16 6 0.16
17 21 0.55
18 11 0.29
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.07
Consensus pattern (17 bp):
AAATAAAAAAGAAAAAG
Found at i:14002501 original size:42 final size:42
Alignment explanation
Indices: 14002450--14002566 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
14002440 GAGATGTGCT
* *
14002450 TTTCTGTAAGACCATGTATGGGACATTGGCATCG-TATATGA
1 TTTCTGTAAGACCATGTCTGGGACATTGGCATCGATATATAA
* * * *
14002491 TTTCGTGTAAGACCTTGTCTAGGACAGTGGCATCGATATTTAA
1 TTTC-TGTAAGACCATGTCTGGGACATTGGCATCGATATATAA
* * *
14002534 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTTC-TGTAAGACCATGTCTGGGACATTGGCAT
14002567 TGTACGAGTT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 4 0.07
42 26 0.43
43 31 0.51
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TTTCTGTAAGACCATGTCTGGGACATTGGCATCGATATATAA
Done.