Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 480 of 770
Found at i:148318766 original size:25 final size:25
Alignment explanation
Indices: 148318738--148318785 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148318728 ATATATAAAC
* * *
148318738 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
148318763 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
148318786 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:148326293 original size:30 final size:31
Alignment explanation
Indices: 148326257--148326319 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
148326247 CCTTTTCATA
148326257 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
148326287 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
148326318 TT
1 TT
148326320 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:148326560 original size:23 final size:23
Alignment explanation
Indices: 148326532--148326649 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
148326522 CCTAGCCTCT
148326532 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148326554 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
148326578 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
148326601 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148326624 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
148326647 TTT
1 TTT
148326650 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
23 86 0.93
24 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:148326722 original size:9 final size:9
Alignment explanation
Indices: 148326708--148326764 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
148326698 ATCTCATGTG
148326708 CATATCATA
1 CATATCATA
*
148326717 CATATCATGTG
1 CATATCA--TA
148326728 CATATCATA
1 CATATCATA
* *
148326737 CATGTCATGTG
1 CATATCA--TA
148326748 CATATCATA
1 CATATCATA
148326757 CATATCAT
1 CATATCAT
148326765 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:148326724 original size:20 final size:20
Alignment explanation
Indices: 148326696--148326766 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
148326686 GCATTTATGA
*
148326696 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
148326716 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
148326736 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
148326756 ACATATCATGT
1 ACATATCATGT
148326767 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:148326731 original size:11 final size:11
Alignment explanation
Indices: 148326701--148326755 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
148326691 TATGAACATC
148326701 TCATGTGCATA
1 TCATGTGCATA
*
148326712 TCA--TACATA
1 TCATGTGCATA
148326721 TCATGTGCATA
1 TCATGTGCATA
* *
148326732 TCA--TACATG
1 TCATGTGCATA
148326741 TCATGTGCATA
1 TCATGTGCATA
148326752 TCAT
1 TCAT
148326756 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:148326831 original size:25 final size:25
Alignment explanation
Indices: 148326803--148326850 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148326793 ATATATAAAC
* * *
148326803 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
148326828 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
148326851 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:148330645 original size:28 final size:28
Alignment explanation
Indices: 148330580--148330680 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
148330570 ATAGTGAATC
*
148330580 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
148330609 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
148330637 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
148330667 CGCACACTTAGTGC
1 CGCACACTTAGTGC
148330681 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:148336010 original size:46 final size:46
Alignment explanation
Indices: 148335943--148336114 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
148335933 AACCCGACCC
* * * *
148335943 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
*
148335989 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTACATCCA
* * * * *
148336037 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
*
148336082 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
148336115 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 58 0.56
47 27 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
Found at i:148336056 original size:93 final size:93
Alignment explanation
Indices: 148335948--148336118 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
148335938 GACCCTAAGT
* * * **
148335948 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
148336013 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
148336041 GAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
148336106 CGAGTTCGGATGC
66 CGAGTTCGGATGC
148336119 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:148343659 original size:93 final size:93
Alignment explanation
Indices: 148343531--148343701 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
148343521 GCCCCTAAGT
* * * *
148343531 GAACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGGACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
148343596 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
148343624 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
148343688 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
148343702 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:148343691 original size:46 final size:45
Alignment explanation
Indices: 148343528--148343698 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
148343518 CCCGCCCCTA
* * *
148343528 AGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCAT
* *
148343573 AAGTGGACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT
*
148343621 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
148343666 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
148343699 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 10, Indels: 22
0.76 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 55 0.53
47 28 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:148349447 original size:27 final size:27
Alignment explanation
Indices: 148349393--148349503 Score: 147
Period size: 27 Copynumber: 4.1 Consensus size: 27
148349383 AGCATGGCTG
* *
148349393 CCAGAACAGATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
*
148349419 CCAGAATAGATAATTGTGGCAGTGCCA
1 CCAGAACAGATAATTGTGGCAGTGCCA
148349446 CCAGAACAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGTGCCA
*
148349473 CCAGATCAGATAATTGTGGCA-TAGCCA
1 CCAGAACAGATAATTGTGGCAGT-GCCA
148349500 CCAG
1 CCAG
148349504 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGTGCCA
Found at i:148349475 original size:54 final size:53
Alignment explanation
Indices: 148349393--148349503 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 53
148349383 AGCATGGCTG
*
148349393 CCAGAACAGATAATGTGACAGTGTCACCAGAAT-AGATAATTGTGGCAGT-GCCA
1 CCAGAACAGATAATGTGACAGTGCCACCAG-ATCAGATAATTGTGGCA-TAGCCA
*
148349446 CCAGAACAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
148349500 CCAG
1 CCAG
148349504 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
53 15 0.28
54 38 0.72
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGTGCCACCAGATCAGATAATTGTGGCATAGCCA
Found at i:148350971 original size:24 final size:24
Alignment explanation
Indices: 148350936--148351036 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
148350926 CCAACACCGT
*
148350936 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
148350960 TCTCCCTTATCAGCTCCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
148350984 TCTCCCTTATGAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
148351008 TCTCCCTTATTAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
148351032 TCTCC
1 TCTCC
148351037 TGACAGCCTT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.20, C:0.41, G:0.05, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:148357362 original size:27 final size:27
Alignment explanation
Indices: 148357302--148357412 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
148357292 AGCGTGGTTG
* * * *
148357302 CCAGAACAAATAA-TGTGACAGTGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
148357328 CTAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
148357355 TCATAACAGAT-ATATGTGGCAGTGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
148357382 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
148357409 CCAG
1 CCAG
148357413 GAAGCTTCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
26 13 0.19
27 52 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:148357396 original size:54 final size:53
Alignment explanation
Indices: 148357306--148357408 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 53
148357296 TGGTTGCCAG
* * *
148357306 AACAAATAATGTGACAGTGTCACTAGAACAGATAATTGTGGCAGAGCCATCAT
1 AACAAATAATGTGACAGTGCCACCAGAACAAATAATTGTGGCAGAGCCATCAT
* * * *
148357359 AACAGATATATGTGGCAGTGCCACCAGATCAAATAATTGTGGCATAGCCA
1 AACAAATA-ATGTGACAGTGCCACCAGAACAAATAATTGTGGCAGAGCCA
148357409 CCAGGAAGCT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 7 0.17
54 35 0.83
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.22
Consensus pattern (53 bp):
AACAAATAATGTGACAGTGCCACCAGAACAAATAATTGTGGCAGAGCCATCAT
Found at i:148367219 original size:40 final size:40
Alignment explanation
Indices: 148367134--148367284 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
148367124 AATTGAATGA
* * *
148367134 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
148367174 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
148367215 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
148367254 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
148367285 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:148367298 original size:40 final size:40
Alignment explanation
Indices: 148367170--148367300 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
148367160 TATGCTGGAA
* * *
148367170 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
148367210 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
148367250 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
148367290 ATTATATCCGG
1 ATTATATCCGG
148367301 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:148375597 original size:28 final size:28
Alignment explanation
Indices: 148375565--148375663 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
148375555 GCAATAAGCC
*
148375565 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
148375593 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
148375621 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
148375650 CGCACACTTAGTGC
1 CGCACACTTAGTGC
148375664 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:148382574 original size:29 final size:29
Alignment explanation
Indices: 148382550--148382642 Score: 161
Period size: 29 Copynumber: 3.2 Consensus size: 29
148382540 TCGCACACCC
*
148382550 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
148382579 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
148382608 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
148382637 -GTGCCA
1 AGTGCCA
148382643 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 6 0.10
29 56 0.90
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:148382575 original size:58 final size:57
Alignment explanation
Indices: 148382512--148382642 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 57
148382502 GATTTAAGCC
* * *
148382512 CGCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCA
1 CGCACAC-TAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCA
* * * **
148382570 TGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACAC-TAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
*
148382628 CGCACACTTGTGCCA
1 CGCACACTAGTGCCA
148382643 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
57 7 0.11
58 53 0.87
59 1 0.02
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (57 bp):
CGCACACTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCA
Found at i:148393327 original size:29 final size:29
Alignment explanation
Indices: 148393303--148393396 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
148393293 TCGCACACCC
*
148393303 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
148393332 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
148393361 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
148393390 AGTGCCA
1 AGTGCCA
148393397 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:148393328 original size:58 final size:58
Alignment explanation
Indices: 148393266--148393396 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
148393256 ATTTAAGCCA
* * * * *
148393266 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAC
* * **
148393324 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAC
148393382 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
148393397 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAC
Found at i:148407786 original size:21 final size:22
Alignment explanation
Indices: 148407753--148407793 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
148407743 TTCATTTATG
*
148407753 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
148407774 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
148407794 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:148408271 original size:28 final size:28
Alignment explanation
Indices: 148408203--148408281 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
148408193 GAATCATTCG
**
148408203 ATATTTTGCACACTAAGTTTCATTCACA
1 ATATTTTGCACACTAAGTGCCATTCACA
* * **
148408231 ATATCTCGCACACTAAGTGCCATTCTTA
1 ATATTTTGCACACTAAGTGCCATTCACA
* *
148408259 ATATTTTGTACACTGAGTGCCAT
1 ATATTTTGCACACTAAGTGCCAT
148408282 ATTTGATTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (28 bp):
ATATTTTGCACACTAAGTGCCATTCACA
Found at i:148411789 original size:3 final size:3
Alignment explanation
Indices: 148411781--148411852 Score: 135
Period size: 3 Copynumber: 24.0 Consensus size: 3
148411771 ATTTGTTCAA
*
148411781 AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
148411829 AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT
148411853 TCATTACATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:148413166 original size:14 final size:13
Alignment explanation
Indices: 148413146--148413177 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
148413136 AATATTTGAC
148413146 TTGTTCTTAATTA
1 TTGTTCTTAATTA
148413159 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
148413173 TTGTT
1 TTGTT
148413178 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:148416695 original size:53 final size:54
Alignment explanation
Indices: 148416516--148416721 Score: 234
Period size: 53 Copynumber: 3.8 Consensus size: 54
148416506 TTAGGGTTTG
* * *
148416516 AGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTACAAGGCA
* * * ** * * * *
148416570 AGGAAATCATGTAAGATCATGTTAAGACATGGCATTGATAAACTTCTACAAGACA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTACAAGGCA
* * * * *
148416625 AAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTACAAGGCA
*
148416678 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
148416722 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 35 0.29
55 42 0.34
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTACAAGGCA
Found at i:148418329 original size:29 final size:29
Alignment explanation
Indices: 148418295--148418369 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
148418285 TACTCGATTT
*
148418295 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
148418324 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
148418353 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
148418370 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:148418414 original size:28 final size:29
Alignment explanation
Indices: 148418353--148418425 Score: 130
Period size: 28 Copynumber: 2.6 Consensus size: 29
148418343 CCTTCGAGCT
148418353 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
148418382 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
148418410 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
148418426 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:148424084 original size:123 final size:120
Alignment explanation
Indices: 148423867--148424085 Score: 280
Period size: 123 Copynumber: 1.8 Consensus size: 120
148423857 GAATTATGTG
* * * *
148423867 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATCCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
* * * **
148423932 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
148423987 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CCG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATCCCG
*
148424050 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
61 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
148424086 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
120 15 0.18
122 29 0.35
123 37 0.45
124 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:148424129 original size:40 final size:40
Alignment explanation
Indices: 148424044--148424194 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
148424034 AATTGAATGA
* * * *
148424044 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
148424084 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
148424125 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
148424164 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
148424195 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:148424208 original size:40 final size:40
Alignment explanation
Indices: 148424081--148424210 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
148424071 ATGCTGGAAA
* * *
148424081 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
148424121 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
148424161 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
148424201 TTATATCCGG
1 TTATATCCGG
148424211 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:148424209 original size:80 final size:80
Alignment explanation
Indices: 148424043--148424210 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
148424033 AAATTGAATG
* *
148424043 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
148424108 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
148424123 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
148424186 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
148424203 ATATCCGG
1 ATATCCGG
148424211 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:148429236 original size:28 final size:28
Alignment explanation
Indices: 148429204--148429272 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
148429194 GCGTAGATCA
148429204 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
148429232 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
148429260 CGATA-TACCCCTA
1 CGAAATTACCCCTA
148429273 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:148435550 original size:20 final size:20
Alignment explanation
Indices: 148435525--148435562 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
148435515 GTTTATTCGC
*
148435525 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
148435545 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
148435563 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:148437203 original size:28 final size:28
Alignment explanation
Indices: 148437171--148437239 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
148437161 GCGTAGATCA
148437171 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
148437199 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
148437227 CGATA-TACCCCTA
1 CGAAATTACCCCTA
148437240 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:148447152 original size:25 final size:25
Alignment explanation
Indices: 148447124--148447175 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
148447114 TGTTCACTTG
* **
148447124 AGTTGTAGATCGGTATGCTCTCACA
1 AGTTGTAAATCGACATGCTCTCACA
*
148447149 AGTTGTAAATCGACATGCTTTCACA
1 AGTTGTAAATCGACATGCTCTCACA
148447174 AG
1 AG
148447176 CTATGGGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
AGTTGTAAATCGACATGCTCTCACA
Found at i:148456474 original size:28 final size:28
Alignment explanation
Indices: 148456428--148456496 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
148456418 TTTAAAACCC
*
148456428 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
148456455 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
148456483 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
148456497 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:148458138 original size:20 final size:20
Alignment explanation
Indices: 148458115--148458152 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
148458105 CACATCCAAA
*
148458115 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
148458135 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
148458153 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:148462630 original size:28 final size:27
Alignment explanation
Indices: 148462567--148462636 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
148462557 ATAGTGAGTC
*
148462567 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
148462594 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
148462622 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
148462637 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:148470569 original size:28 final size:27
Alignment explanation
Indices: 148470506--148470575 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
148470496 ATAGTGAGTC
*
148470506 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
148470533 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
148470561 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
148470576 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:148473396 original size:30 final size:30
Alignment explanation
Indices: 148473362--148473440 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
148473352 TAAACTAAAA
* * *
148473362 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTAAGCTAAAGC
* * * * *
148473392 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTAAGCTAAAGC
*
148473422 TGAGCTAAGGTTTAGCTCG
1 TGAGCTAAGATTTAGCTCG
148473441 AGCTGAATAT
Statistics
Matches: 36, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTAAGCTAAAGC
Found at i:148475736 original size:30 final size:30
Alignment explanation
Indices: 148475665--148475747 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
148475655 CTTTTGTTTC
* *
148475665 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
148475696 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
148475725 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
148475748 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:148475747 original size:18 final size:18
Alignment explanation
Indices: 148475698--148475753 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
148475688 CACTCTCAAA
* *
148475698 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
148475715 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
148475733 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
148475752 TT
1 TT
148475754 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:148475754 original size:12 final size:12
Alignment explanation
Indices: 148475723--148475747 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
148475713 TTTTTCAATC
148475723 TCATTTTCTTTT
1 TCATTTTCTTTT
148475735 TCATTTTCTTTT
1 TCATTTTCTTTT
148475747 T
1 T
148475748 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:148475765 original size:12 final size:12
Alignment explanation
Indices: 148475750--148475780 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
148475740 TTCTTTTTGC
148475750 TTTTCAAAGACT
1 TTTTCAAAGACT
*
148475762 TTTTCAAAGGCT
1 TTTTCAAAGACT
148475774 TTTTCAA
1 TTTTCAA
148475781 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:148475838 original size:5 final size:5
Alignment explanation
Indices: 148475828--148475884 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
148475818 CTCTTGCCTC
*
148475828 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
148475875 TCTTT TCTTT
1 TCTTT TCTTT
148475885 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:148475868 original size:15 final size:14
Alignment explanation
Indices: 148475828--148475884 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
148475818 CTCTTGCCTC
*
148475828 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
148475843 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
148475858 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
148475875 TCTTTTCTTT
1 TCTTTTCTTT
148475885 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:148475885 original size:21 final size:21
Alignment explanation
Indices: 148475828--148475895 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
148475818 CTCTTGCCTC
* *
148475828 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
148475849 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
148475870 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
148475890 CTCTTT
1 -TCTTT
148475896 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:148476821 original size:13 final size:13
Alignment explanation
Indices: 148476803--148476836 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
148476793 ACTCTTTTTC
148476803 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
148476816 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
148476829 TTTTTTTT
1 TTTTTTTT
148476837 GATTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:148476841 original size:10 final size:12
Alignment explanation
Indices: 148476804--148476846 Score: 63
Period size: 13 Copynumber: 3.7 Consensus size: 12
148476794 CTCTTTTTCT
148476804 TTTTTTTTCGAA
1 TTTTTTTTCGAA
148476816 TTTTTTTTTCGAA
1 -TTTTTTTTCGAA
148476829 TTTTTTTT-G-A
1 TTTTTTTTCGAA
148476839 TTTTTTTT
1 TTTTTTTT
148476847 AACTTGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 9 0.30
11 1 0.03
12 8 0.27
13 12 0.40
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.77
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:148478533 original size:30 final size:30
Alignment explanation
Indices: 148478499--148478582 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
148478489 TAAACTAAAA
* *
148478499 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
* * * * * *
148478529 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
*
148478559 TGAGC-AAGGTTTAGCTCGTGAGCT
1 TGAGCTAAGATTTAGCTCGTGAGCT
148478583 GAATATGAGC
Statistics
Matches: 40, Mismatches: 14, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
29 13 0.32
30 27 0.68
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
Found at i:148486235 original size:12 final size:12
Alignment explanation
Indices: 148486218--148486244 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
148486208 TCACTCATTT
148486218 ATTGACATTCAA
1 ATTGACATTCAA
148486230 ATTGACATTCAA
1 ATTGACATTCAA
148486242 ATT
1 ATT
148486245 ATGTATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (12 bp):
ATTGACATTCAA
Found at i:148492779 original size:29 final size:29
Alignment explanation
Indices: 148492744--148492880 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
148492734 CTACTCGATT
* *
148492744 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
148492773 TCGCACACACAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
148492804 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
148492833 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
148492862 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
148492881 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:148492820 original size:60 final size:58
Alignment explanation
Indices: 148492745--148492879 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 58
148492735 TACTCGATTT
** * * *
148492745 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATATTTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATA--TATTTCCAGCA
* * **
148492805 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
148492863 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
148492880 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 25 0.39
59 4 0.06
60 35 0.55
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:148500836 original size:29 final size:29
Alignment explanation
Indices: 148500801--148500937 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
148500791 CTACTCGATT
* *
148500801 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
148500830 TCGCACACACAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
148500861 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
148500890 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
148500919 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
148500938 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:148500877 original size:60 final size:58
Alignment explanation
Indices: 148500802--148500936 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 58
148500792 TACTCGATTT
** * * *
148500802 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATATTTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATA--TATTTCCAGCA
* * **
148500862 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
148500920 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
148500937 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 25 0.39
59 4 0.06
60 35 0.55
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:148506003 original size:14 final size:16
Alignment explanation
Indices: 148505986--148506019 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
148505976 ATTTTCATTT
148505986 TTTTCA-TTTCT-TCC
1 TTTTCATTTTCTCTCC
148506000 TTTTCATTTTCTCTCC
1 TTTTCATTTTCTCTCC
148506016 TTTT
1 TTTT
148506020 TGACAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCATTTTCTCTCC
Found at i:148506003 original size:15 final size:17
Alignment explanation
Indices: 148505985--148506020 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
148505975 TATTTTCATT
148505985 TTTTTCA-TTTCT-TCC
1 TTTTTCATTTTCTCTCC
148506000 -TTTTCATTTTCTCTCC
1 TTTTTCATTTTCTCTCC
148506016 TTTTT
1 TTTTT
148506021 GACAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 3 0.17
17 4 0.22
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTCATTTTCTCTCC
Found at i:148508227 original size:22 final size:22
Alignment explanation
Indices: 148508202--148508250 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
148508192 CAATGTTATT
*
148508202 AGTGGCAGTTTATCT-ACAAATC
1 AGTGGCAATTTATCTCA-AAATC
148508224 AGTGGCAATTTATCTCAAAATC
1 AGTGGCAATTTATCTCAAAATC
148508246 AGTGG
1 AGTGG
148508251 TGGCTTGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (22 bp):
AGTGGCAATTTATCTCAAAATC
Found at i:148508293 original size:73 final size:73
Alignment explanation
Indices: 148508171--148508336 Score: 287
Period size: 73 Copynumber: 2.3 Consensus size: 73
148508161 TATATGCAAT
* * *
148508171 TCAGTGGTGGCCTGTCCATATCAATGTTATTAGTGGCAGTTTATCTACAAATCAGTGGCAATTTA
1 TCAGTGGTGGCTTGTCCACATCAATGTTATTAGTCGCAGTTTATCTACAAATCAGTGGCAATTTA
148508236 TCTCAAAA
66 TCTCAAAA
* *
148508244 TCAGTGGTGGCTTGTCCACATCACTGTTATTAGTCGCAGTTTATTTACAAATCAGTGGCAATTTA
1 TCAGTGGTGGCTTGTCCACATCAATGTTATTAGTCGCAGTTTATCTACAAATCAGTGGCAATTTA
148508309 TCTCAAAA
66 TCTCAAAA
148508317 TCAGTGGTGGCTTGTCCACA
1 TCAGTGGTGGCTTGTCCACA
148508337 AACGGTGTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 88 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (73 bp):
TCAGTGGTGGCTTGTCCACATCAATGTTATTAGTCGCAGTTTATCTACAAATCAGTGGCAATTTA
TCTCAAAA
Found at i:148509891 original size:27 final size:27
Alignment explanation
Indices: 148509861--148509951 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
148509851 ATTACCAAAG
148509861 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
148509888 TACCATTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
148509915 TACCCTCGA-TTGT-GAAATTA-TAGTTT
1 TACCCTCGATTTATAG-AATTACT-GTTT
148509941 TACCCTCGATT
1 TACCCTCGATT
148509952 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.04
26 20 0.37
27 32 0.59
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:148509940 original size:26 final size:26
Alignment explanation
Indices: 148509911--148509960 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
148509901 CAGAATTACT
148509911 GTTTTACCCTCGATTGTGAAATTATA
1 GTTTTACCCTCGATTGTGAAATTATA
148509937 GTTTTACCCTCGATTGTGAAATTA
1 GTTTTACCCTCGATTGTGAAATTA
148509961 CTGAAATACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (26 bp):
GTTTTACCCTCGATTGTGAAATTATA
Found at i:148509970 original size:26 final size:26
Alignment explanation
Indices: 148509915--148510054 Score: 77
Period size: 27 Copynumber: 5.3 Consensus size: 26
148509905 ATTACTGTTT
***
148509915 TACCCTCGATTGTGAAATTA-TAGTTT
1 TACCCTCGATTGTGAAATTACT-GAAA
148509941 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACTGAAA
** * * **
148509967 TA-CCTTTATAGGGTAGAATTACCAAAA
1 TACCCTCGATTGTG-A-AATTACTGAAA
* * * **
148509994 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACTGAAA
* *
148510021 TACCACTAGTTTGTGAAATTACTGAAA
1 TACC-CTCGATTGTGAAATTACTGAAA
148510048 TACCCTC
1 TACCCTC
148510055 AATTTGTAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
25 7 0.08
26 28 0.31
27 48 0.54
28 1 0.01
29 5 0.06
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACTGAAA
Found at i:148510013 original size:27 final size:27
Alignment explanation
Indices: 148509983--148510106 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
148509973 TATAGGGTAG
148509983 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
148510010 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
148510037 AATTACTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
148510064 AATTGCCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
148510091 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
148510107 TTGACTTTCT
Statistics
Matches: 79, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.06
27 70 0.89
28 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:148510093 original size:81 final size:81
Alignment explanation
Indices: 148509950--148510105 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
148509940 TTACCCTCGA
** * **
148509950 TTGTGAAATTACTGAAATACCTTTATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACTGAAATACCTCAATAGGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA
148510015 CCA-AAATACCACTAGT
66 -CAGAAATACCACTAGT
** *
148510031 TTGTGAAATTACTGAAATACCCTCAAT-TTGTAAAATTGCCAAAATACCCCT-GATTTACAAAAT
1 TTGTGAAATTACTGAAATA-CCTCAATAGGGTAAAATTACCAAAATACCCCTAG-TTTACAAAAT
148510094 TACAGAAATACC
64 TACAGAAATACC
148510106 CTTGACTTTC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.05
81 56 0.88
82 5 0.08
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (81 bp):
TTGTGAAATTACTGAAATACCTCAATAGGGTAAAATTACCAAAATACCCCTAGTTTACAAAATTA
CAGAAATACCACTAGT
Found at i:148510094 original size:54 final size:53
Alignment explanation
Indices: 148510003--148510163 Score: 162
Period size: 54 Copynumber: 2.9 Consensus size: 53
148509993 ATACCCCTAG
***
148510003 TTTGTAAAATTACCAAAATACCACT-AGTTTGTGAAATTACTGAAATACCCTCAA
1 TTTGTAAAATT-CCAAAATACCACTGA-TTTACAAAATTACTGAAATACCCTCAA
* * * *
148510057 TTTGTAAAATTGCCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGAC
1 TTTGTAAAATT-CCAAAATACCACTGATTTACAAAATTACTGAAATACCC-TCAA
* ** *
148510112 TTTCTAAAAATTATAGAAATACCATTGATTTACAAAATTACTGAAATACCCT
1 TTTGT-AAAATTCCA-AAATACCACTGATTTACAAAATTACTGAAATACCCT
148510164 TGGTTTTTAG
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
54 42 0.47
55 9 0.10
56 38 0.43
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (53 bp):
TTTGTAAAATTCCAAAATACCACTGATTTACAAAATTACTGAAATACCCTCAA
Found at i:148510157 original size:27 final size:27
Alignment explanation
Indices: 148510036--148510165 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 27
148510026 CTAGTTTGTG
** **
148510036 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTTGATTTACA
* ** *
148510063 AAATTGCCAAAATACCCCTGATTTACA
1 AAATTACTGAAATACCCTTGATTTACA
*
148510090 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACTGAAATACCCTTGA-TTTAC--A
*
148510119 AAATTA-TAGAAATACCATTGATTTACA
1 AAATTACT-GAAATACCCTTGATTTACA
148510146 AAATTACTGAAATACCCTTG
1 AAATTACTGAAATACCCTTG
148510166 GTTTTTAGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
27 55 0.67
28 7 0.09
29 20 0.24
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGATTTACA
Found at i:148510301 original size:25 final size:26
Alignment explanation
Indices: 148510222--148510291 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
148510212 TACCCCTAAT
*
148510222 TGGTAAAAAGACCGTAA-AGCCCCTGTA
1 TGGTAAAATGACCG-AATA-CCCCTGTA
* *
148510249 GGGTAAAGTGACCGAATACCCCTGTA
1 TGGTAAAATGACCGAATACCCCTGTA
148510275 TGGTAAAATGA-CGAATA
1 TGGTAAAATGACCGAATA
148510292 TGCCCTTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 6 0.16
26 19 0.51
27 12 0.32
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
TGGTAAAATGACCGAATACCCCTGTA
Found at i:148511134 original size:25 final size:24
Alignment explanation
Indices: 148511096--148511165 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
148511086 AGGAAGTGCT
*
148511096 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCTAGTTTACC
*
148511120 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCTAGTTTACC
* *
148511145 AAAGAGGGATTTGCCCCAGTT
1 AAA-AGGGCTTTGCCCTAGTT
148511166 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 3 0.08
25 37 0.93
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCTAGTTTACC
Found at i:148511617 original size:20 final size:20
Alignment explanation
Indices: 148511592--148511629 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
148511582 GTTTATTCGC
*
148511592 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
148511612 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
148511630 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:148513285 original size:25 final size:27
Alignment explanation
Indices: 148513251--148513316 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 27
148513241 GCGTAGATCA
148513251 CGAAATTA-CCCTAAAGA-AAAATTAC
1 CGAAATTACCCCTAAAGACAAAATTAC
148513276 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGA-CAAAATTAC
*
148513304 CGATA-TACCCCTA
1 CGAAATTACCCCTA
148513317 GGGTTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 8 0.22
26 9 0.24
27 8 0.22
28 12 0.32
ACGTcount: A:0.45, C:0.26, G:0.09, T:0.20
Consensus pattern (27 bp):
CGAAATTACCCCTAAAGACAAAATTAC
Found at i:148519585 original size:20 final size:20
Alignment explanation
Indices: 148519560--148519597 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
148519550 GTTTATTCGC
*
148519560 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
148519580 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
148519598 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:148521160 original size:29 final size:29
Alignment explanation
Indices: 148521127--148521200 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
148521117 GTGACGAGAT
148521127 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
148521156 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
148521185 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
148521201 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:148526393 original size:25 final size:25
Alignment explanation
Indices: 148526364--148526411 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148526354 TTATAATATG
* * *
148526364 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
148526389 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
148526412 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:148526480 original size:20 final size:20
Alignment explanation
Indices: 148526455--148526513 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
148526445 TAAATATGGT
148526455 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
148526475 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
148526495 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
148526514 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:148526495 original size:11 final size:11
Alignment explanation
Indices: 148526459--148526513 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
148526449 TATGGTATGT
148526459 ATGATATGCAC
1 ATGATATGCAC
* *
148526470 ATGAAATG--T
1 ATGATATGCAC
148526479 ATGATATGCAC
1 ATGATATGCAC
*
148526490 ATGATATG--T
1 ATGATATGCAC
148526499 ATGATATGCAC
1 ATGATATGCAC
148526510 ATGA
1 ATGA
148526514 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:148526591 original size:24 final size:24
Alignment explanation
Indices: 148526564--148526705 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
148526554 GAGGAAGTGA
148526564 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
148526588 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
148526612 AAAAGGGCTTATG-CCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
148526634 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
148526658 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
148526682 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
148526706 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
22 13 0.12
23 18 0.17
24 67 0.61
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:148526649 original size:46 final size:47
Alignment explanation
Indices: 148526564--148526705 Score: 198
Period size: 46 Copynumber: 3.0 Consensus size: 47
148526554 GAGGAAGTGA
148526564 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
148526612 AAAAGGGCTTATG-CCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
148526658 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
148526706 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 34 0.40
47 17 0.20
48 24 0.28
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:148526932 original size:31 final size:31
Alignment explanation
Indices: 148526897--148526960 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
148526887 CGTTTACAGT
148526897 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
148526928 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
148526959 AA
1 AA
148526961 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:148534490 original size:25 final size:25
Alignment explanation
Indices: 148534461--148534508 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148534451 TTATAATATG
* * *
148534461 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
148534486 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
148534509 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:148534577 original size:20 final size:20
Alignment explanation
Indices: 148534552--148534590 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
148534542 TAAATATGGT
148534552 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
148534572 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
148534591 GGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:148534756 original size:25 final size:24
Alignment explanation
Indices: 148534641--148534760 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
148534631 GAGGAAGTGA
148534641 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
148534665 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
148534689 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
148534713 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
148534737 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
148534761 ATGATGCACA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:148534874 original size:24 final size:24
Alignment explanation
Indices: 148534847--148534986 Score: 203
Period size: 24 Copynumber: 5.8 Consensus size: 24
148534837 GAAGTGAAAG
148534847 AGGGCTTATGCCCCAGTTATCAAA
1 AGGGCTTATGCCCCAGTTATCAAA
148534871 AGGGCTTATGCCCCAGTTATCAAA
1 AGGGCTTATGCCCCAGTTATCAAA
148534895 AGGGCTTATGCCCCAGTTAT-AAA
1 AGGGCTTATGCCCCAGTTATCAAA
**
148534918 AGGGCTTATGCCCCAGTTATTGAA
1 AGGGCTTATGCCCCAGTTATCAAA
* *
148534942 AGGGCTTTTGCCCCAGTTATTAAA
1 AGGGCTTATGCCCCAGTTATCAAA
*
148534966 AGAGGC-TAGGCCTCCAGTTAT
1 AG-GGCTTATGCC-CCAGTTAT
148534987 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 74 0.69
25 11 0.10
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AGGGCTTATGCCCCAGTTATCAAA
Found at i:148534910 original size:203 final size:201
Alignment explanation
Indices: 148534561--148534947 Score: 711
Period size: 203 Copynumber: 1.9 Consensus size: 201
148534551 TATGTATGAT
*
148534561 ATGCACATGAAATGTATGATATGCACATGAGGTAATCATAAATGCATTGGGTTGGGTTTTTATAT
1 ATGCACATGAAATGTATGATATGCACATGAGGTAATCATAAATGCATTGGGTTAGGTTTTTATAT
148534626 GGATGGAGGAAGTGAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAA
66 GGATGGAGGAAGTGAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAA
* *
148534691 AAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCA
131 AAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTAGGCCTCCA
148534756 GTTATATG
194 GTTATATG
148534764 ATGCACATGAAATGTATGATATGCACATGAGGTAATCATAAATGCATTGGGTTAGGTTTTTATAT
1 ATGCACATGAAATGTATGATATGCACATGAGGTAATCATAAATGCATTGGGTTAGGTTTTTATAT
*
148534829 GGATGGAGGAAGTGAAAGAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAA
66 GGATGGAGGAAGTGAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAA
*
148534894 AAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCT
131 AAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCT
148534948 TTTGCCCCAG
Statistics
Matches: 179, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
201 4 0.02
202 27 0.15
203 148 0.83
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (201 bp):
ATGCACATGAAATGTATGATATGCACATGAGGTAATCATAAATGCATTGGGTTAGGTTTTTATAT
GGATGGAGGAAGTGAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAA
AAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTAGGCCTCCAGT
TATATG
Found at i:148534934 original size:47 final size:47
Alignment explanation
Indices: 148534847--148534986 Score: 201
Period size: 47 Copynumber: 2.9 Consensus size: 47
148534837 GAAGTGAAAG
148534847 AGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAA
1 AGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAA
**
148534895 AGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAA
1 AGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAA
* *
148534942 AGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
148534987 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
47 43 0.51
48 31 0.36
49 11 0.13
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
AGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAA
Found at i:148534967 original size:71 final size:72
Alignment explanation
Indices: 148534847--148534987 Score: 214
Period size: 71 Copynumber: 2.0 Consensus size: 72
148534837 GAAGTGAAAG
*
148534847 AGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCA
1 AGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTCCA
148534910 GTTATAAA
65 GTTATAAA
** * *
148534918 AGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAG
1 AGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAG
148534983 TTATA
66 TTATA
148534988 TGATAAAGCA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 51 0.81
72 12 0.19
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (72 bp):
AGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAG
TTATAAA
Found at i:148535213 original size:31 final size:31
Alignment explanation
Indices: 148535178--148535241 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
148535168 CGTTTACAGT
148535178 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
148535209 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
148535240 AA
1 AA
148535242 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:148536024 original size:46 final size:46
Alignment explanation
Indices: 148535957--148536125 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
148535947 TTACAATCCA
148535957 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
148536003 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
148536050 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
148536096 AGCTCGTTGAGTTGAGTCCGAGCTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
148536126 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:148543179 original size:40 final size:40
Alignment explanation
Indices: 148543134--148543300 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
148543124 CGGAATATAA
148543134 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
148543174 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
148543214 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
148543254 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
148543293 CCGGATAT
1 CCGGATAT
148543301 CATTCAATTA
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:148551165 original size:40 final size:40
Alignment explanation
Indices: 148551120--148551286 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
148551110 CGGAATATAA
148551120 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
148551160 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
148551200 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
148551240 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
148551279 CCGGATAT
1 CCGGATAT
148551287 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:148553960 original size:39 final size:39
Alignment explanation
Indices: 148553888--148554050 Score: 272
Period size: 39 Copynumber: 4.2 Consensus size: 39
148553878 TATGGTAACC
* *
148553888 CGCACAAATGCCTTCGGGGCTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTC-GGGCTTAGCCCGGATATCACAACT
*
148553928 CGCACAATTGCCTTCGAGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
148553967 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
148554006 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
148554045 CGCACA
1 CGCACA
148554051 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 102 0.88
40 14 0.12
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:148556211 original size:30 final size:30
Alignment explanation
Indices: 148556167--148556225 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
148556157 CTTTAATACG
*
148556167 ACTTTGGCAAAATTACATTTTTGCCCCTAA
1 ACTTTGGCAAAATTACACTTTTGCCCCTAA
* *
148556197 ACTTTTGCATAATTACACTTTTGCCCCTA
1 ACTTTGGCAAAATTACACTTTTGCCCCTA
148556226 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.39
Consensus pattern (30 bp):
ACTTTGGCAAAATTACACTTTTGCCCCTAA
Found at i:148557905 original size:11 final size:12
Alignment explanation
Indices: 148557889--148557935 Score: 64
Period size: 11 Copynumber: 4.2 Consensus size: 12
148557879 CACCACCCAA
148557889 CAACCACCATAT
1 CAACCACCATAT
*
148557901 C-ACCAACATA-
1 CAACCACCATAT
148557911 CAACCACCAT-T
1 CAACCACCATAT
148557922 CAACCACCATAT
1 CAACCACCATAT
148557934 CA
1 CA
148557936 CAACTGTACC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 1 0.03
11 25 0.83
12 4 0.13
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.15
Consensus pattern (12 bp):
CAACCACCATAT
Found at i:148557932 original size:22 final size:22
Alignment explanation
Indices: 148557879--148557932 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
148557869 CAAACCAAAA
148557879 CACCACCCA-ACAACCACCATAT
1 CACCA-CCATACAACCACCATAT
*
148557901 CACCAACATACAACCACCAT-T
1 CACCACCATACAACCACCATAT
148557922 CAACCACCATA
1 C-ACCACCATA
148557933 TCACAACTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.43, C:0.46, G:0.00, T:0.11
Consensus pattern (22 bp):
CACCACCATACAACCACCATAT
Found at i:148558043 original size:69 final size:69
Alignment explanation
Indices: 148557915--148558043 Score: 188
Period size: 69 Copynumber: 1.9 Consensus size: 69
148557905 AACATACAAC
* * * *
148557915 CACCATTCAACCACCATATCACAACTGTACCACTACTCTTGTGCCAAAACCTAACAACCACCATA
1 CACCATTCAACCACCACATCACAACTATACCACTACTCTTGTGCCAAAACCCAAAAACCACCATA
148557980 TCAT
66 TCAT
**
148557984 CACCATTCAACCACCACATCACAA-TCATACCACTACTCTTGTGCCACCACCCAAAAACCA
1 CACCATTCAACCACCACATCACAACT-ATACCACTACTCTTGTGCCAAAACCCAAAAACCA
148558044 ATTTCTTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 1 0.02
69 52 0.98
ACGTcount: A:0.36, C:0.40, G:0.04, T:0.19
Consensus pattern (69 bp):
CACCATTCAACCACCACATCACAACTATACCACTACTCTTGTGCCAAAACCCAAAAACCACCATA
TCAT
Found at i:148564180 original size:41 final size:41
Alignment explanation
Indices: 148564135--148564252 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
148564125 TGAAAGATAA
148564135 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
148564176 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148564206 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148564247 ATGTAG
1 ATGTAG
148564253 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:148564191 original size:71 final size:71
Alignment explanation
Indices: 148564103--148564266 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
148564093 GAGATGTATC
148564103 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148564168 AGGACA
66 AGGACA
148564174 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148564239 AGGACA
66 AGGACA
148564245 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
148564267 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:148571800 original size:51 final size:54
Alignment explanation
Indices: 148571711--148571819 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 54
148571701 AAATGTAGCT
148571711 AGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAC
1 AGGTCGCATGCGTGATTCCAAGT--A-GACACCATGTAGACAAGAGAGCTACGAGAC
148571768 AGGTCGCATGCGTGA-TCCAAGT-G-CACCATGTAGACAAGAGAGCTACGAGAC
1 AGGTCGCATGCGTGATTCCAAGTAGACACCATGTAGACAAGAGAGCTACGAGAC
148571819 A
1 A
148571820 AATCGAGGTC
Statistics
Matches: 52, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
51 29 0.56
52 1 0.02
56 7 0.13
57 15 0.29
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (54 bp):
AGGTCGCATGCGTGATTCCAAGTAGACACCATGTAGACAAGAGAGCTACGAGAC
Found at i:148574299 original size:7 final size:7
Alignment explanation
Indices: 148574279--148574313 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
148574269 AATTATTCTA
148574279 ATATTTT
1 ATATTTT
148574286 GATATTTT
1 -ATATTTT
148574294 ATATTTT
1 ATATTTT
148574301 ATATTTT
1 ATATTTT
148574308 ATATTT
1 ATATTT
148574314 ATTATTCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.74
8 7 0.26
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (7 bp):
ATATTTT
Found at i:148574319 original size:21 final size:23
Alignment explanation
Indices: 148574265--148574320 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 23
148574255 TCATATTAAT
*
148574265 TATTAATTATTCTAATATTTTGA
1 TATTTATTATTCTAATATTTTGA
*
148574288 TATTT-TATATT-TTATATTTT-A
1 TATTTAT-TATTCTAATATTTTGA
148574309 TATTTATTATTC
1 TATTTATTATTC
148574321 ACATCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
21 10 0.36
22 10 0.36
23 8 0.29
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TATTTATTATTCTAATATTTTGA
Found at i:148575888 original size:12 final size:12
Alignment explanation
Indices: 148575871--148575906 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
148575861 ATTCATTTGA
148575871 CATTCATGCATT
1 CATTCATGCATT
148575883 CATTCATGCATT
1 CATTCATGCATT
*
148575895 CATTCATACATT
1 CATTCATGCATT
148575907 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:148584406 original size:75 final size:75
Alignment explanation
Indices: 148584196--148584824 Score: 557
Period size: 74 Copynumber: 8.2 Consensus size: 75
148584186 TTCTGCATTC
* * *
148584196 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACAT
1 CAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
*
148584260 GCTGAGGT-CTTTT
62 GCTGAGGTATTTTT
***
148584273 CAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 CAATTTCTGTT--TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
148584338 TGAGGTATTTTT
64 TGAGGTATTTTT
* *
148584350 AAATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
148584415 AGGTATTTTT
66 AGGTATTTTT
* *
148584425 AAATTTCTGTTTTTCAAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
148584489 AGGTA-ATTT
66 AGGTATTTTT
* * * * *
148584498 CAATTTCTGTTTATC-AAAAATTAACTCATATTGCGAGAGGAGAGTTAAGCCTC-GGCTCACATG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACG
*
148584561 CTGAGGT-CTTTT
63 CTGAGGTATTTTT
** * * *
148584573 CAATTTCTGTTTTTCAATTTCTGTTCATAAAAAAAATCA-ACT-C-ATATTGAGAGAGGTGAGTT
1 CAATTTCTGTTTTTCAA---------A-AAATCAACTCATATTGCGAGA--G-G-----TGAGTT
148584635 GAGCCTCAGGACACGCTGAGGTATTTTT
48 GAGCCTCAGGACACGCTGAGGTATTTTT
* * * *
148584663 AAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* *
148584727 AGGTA-ATTG
66 AGGTATTTTT
* * * * * * *
148584736 CAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACGCG
1 CAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG
148584800 CTGAGGTA-TTTT
63 CTGAGGTATTTTT
*
148584812 CAATTTCTATTTT
1 CAATTTCTGTTTT
148584825 CAATTTACGT
Statistics
Matches: 456, Mismatches: 58, Indels: 76
0.77 0.10 0.13
Matches are distributed among these distances:
72 11 0.02
73 54 0.12
74 109 0.24
75 109 0.24
76 32 0.07
77 25 0.05
78 39 0.09
79 11 0.02
80 4 0.01
81 1 0.00
82 2 0.00
83 2 0.00
84 1 0.00
85 4 0.01
86 9 0.02
89 12 0.03
90 18 0.04
91 11 0.02
92 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (75 bp):
CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTTT
Found at i:148584487 original size:74 final size:74
Alignment explanation
Indices: 148584196--148584824 Score: 561
Period size: 75 Copynumber: 8.2 Consensus size: 74
148584186 TTCTGCATTC
* * * *
148584196 CAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 CAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACG
*
148584261 CTGAGGTCTTTT
63 CTGAGGTATTTT
*** *
148584273 CAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 CAATTTCTGTT--TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
148584338 TGAGGTATTTTT
64 TGAGGTA-TTTT
* * *
148584350 AAATTTTTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
148584415 AGGTATTTTT
66 AGGTA-TTTT
*
148584425 AAATTTCTGTTTTTCAAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
*
148584489 AGGTAATTT
66 AGGTATTTT
* * * * * *
148584498 CAATTTCTGTTTATC-AAAAATTAACTCATATTGCGAGAGGAGAGTTAAGCCTCGGCTCACATGC
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGC
*
148584562 TGAGGTCTTTT
64 TGAGGTATTTT
** * * *
148584573 CAATTTCTGTTTTTCAATTTCTGTTCATAAAAAAAATCA-ACT-C-ATATTGAGAGAGGTGAGTT
1 CAATTTCTGTTTTTCAA---------A-AAATCAACTCATATTGCGAGA--G-G-----TGAGTT
*
148584635 GAGCCTCAGGACACGCTGAGGTATTTTT
48 GAGCCTCGGGACACGCTGAGGTA-TTTT
* * *
148584663 AAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTG
1 CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
* *
148584727 AGGTAATTG
66 AGGTATTTT
* * * * * ** *
148584736 CAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACGCG
1 CAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACG
148584800 CTGAGGTATTTT
63 CTGAGGTATTTT
*
148584812 CAATTTCTATTTT
1 CAATTTCTGTTTT
148584825 CAATTTACGT
Statistics
Matches: 454, Mismatches: 64, Indels: 68
0.77 0.11 0.12
Matches are distributed among these distances:
72 9 0.02
73 56 0.12
74 108 0.24
75 110 0.24
76 32 0.07
77 25 0.06
78 40 0.09
79 9 0.02
80 4 0.01
81 1 0.00
82 2 0.00
83 2 0.00
84 1 0.00
85 4 0.01
86 9 0.02
89 12 0.03
90 18 0.04
91 12 0.03
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (74 bp):
CAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
AGGTATTTT
Found at i:148584588 original size:14 final size:14
Alignment explanation
Indices: 148584569--148584597 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
148584559 TGCTGAGGTC
148584569 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
148584583 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
148584597 T
1 T
148584598 CATAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:148584637 original size:238 final size:236
Alignment explanation
Indices: 148584365--148584872 Score: 743
Period size: 238 Copynumber: 2.1 Consensus size: 236
148584355 TTTGTTTTTC
148584365 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
148584430 TCTGTTTTTCAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
66 TCTGTTTTTCAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
* * * * * * *
148584495 TTTCAATTTCTGTT-T-ATCAAAAATTAACTCATATTGCGAGAGGAGAGTTAAGCCTCGGCTCAC
131 TTGCAATTTCTATTGTCA-AAAAAATCAACTCATATTGCAAGAAGAGAGTTAAGCCTCAGCTCAC
* * *
148584558 ATGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTT-CTGTTCATAA
195 ACGCTGAGGTATTTTCAATTTCT-ATTTTCAATTTAC-GTT-AT-A
*
148584603 AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
* * *
148584668 TCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTGAGGTAA
66 TCTGTTTTTCAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
* * * *
148584733 TTGCAATTTCTATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACG
131 TTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCAAGAAGAGAGTTAAGCCTCAGCTCACA
* *
148584798 CGCTGAGGTATTTTCAATTTCTATTTTCAATTTACGTTGTT
196 CGCTGAGGTATTTTCAATTTCTATTTTCAATTTACGTTATA
* * *
148584839 CAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
148584873 ACCTTTTAAT
Statistics
Matches: 243, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
236 30 0.12
237 1 0.00
238 151 0.62
239 60 0.25
240 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (236 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
TCTGTTTTTCAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
TTGCAATTTCTATTGTCAAAAAAATCAACTCATATTGCAAGAAGAGAGTTAAGCCTCAGCTCACA
CGCTGAGGTATTTTCAATTTCTATTTTCAATTTACGTTATA
Found at i:148584692 original size:91 final size:89
Alignment explanation
Indices: 148584513--148584692 Score: 200
Period size: 91 Copynumber: 2.0 Consensus size: 89
148584503 TCTGTTTATC
* * * *
148584513 AAAAATTAACTCATATTGCGAGAGGAGAGTTAAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGAGAGAGGAGAGTTAAGCCTCGG--CACACGCTGAGGTCTTTTAAATT
** ***
148584578 TCTGTTTTTCAATTTCTGTTCATAAA
64 TCTGTTTTTCAAAATCAACTCATAAA
* * *
148584604 AAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAAATT
1 AAAAATCAACTCATATTGAGAGAGGAGAGTTAAGCCTC-GGCACACGCTGAGGT-CTTTTAAATT
148584668 TCTGTTTTTCAAAAATCAACTCATA
64 TCTGTTTTTC-AAAATCAACTCATA
148584693 TTGCGAGAGG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
89 11 0.15
90 18 0.24
91 43 0.58
92 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (89 bp):
AAAAATCAACTCATATTGAGAGAGGAGAGTTAAGCCTCGGCACACGCTGAGGTCTTTTAAATTTC
TGTTTTTCAAAATCAACTCATAAA
Found at i:148584824 original size:13 final size:13
Alignment explanation
Indices: 148584806--148584830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
148584796 CGCGCTGAGG
148584806 TATTTTCAATTTC
1 TATTTTCAATTTC
148584819 TATTTTCAATTT
1 TATTTTCAATTT
148584831 ACGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:148585007 original size:140 final size:140
Alignment explanation
Indices: 148584753--148585390 Score: 1080
Period size: 140 Copynumber: 4.5 Consensus size: 140
148584743 TATTGTCAAA
** * * *
148584753 AAAATCAATTCATATTGCAAGAAGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA--CGCTGAGGTATTTTCAATTT
148584818 CTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
64 CTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
148584883 TTCTACTTTTTC
129 TTCTACTTTTTC
*
148584895 AAAATCAGCTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
*
148584960 TTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 ATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
148585025 CTACTTTTTC
131 CTACTTTTTC
148585035 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
* * *
148585100 GTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTT
66 ATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
148585165 CTACTTTTTC
131 CTACTTTTTC
*
148585175 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
*
148585240 ATTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
66 ATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
*
148585305 CCACTTTTTC
131 CTACTTTTTC
*
148585315 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCATATGCTGAGGTATTTTCAATT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TC--ACGCTGAGGTATTTTCAATT
*
148585379 TCTGTCTTTCAA
63 TCTAT-TTTCAA
148585391 AAAAAAAATT
Statistics
Matches: 472, Mismatches: 20, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
139 1 0.00
140 405 0.86
142 60 0.13
143 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.37
Consensus pattern (140 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
ATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
CTACTTTTTC
Found at i:148585244 original size:13 final size:13
Alignment explanation
Indices: 148585226--148585250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
148585216 CACGCTGAGG
148585226 TATTTTCAATTTC
1 TATTTTCAATTTC
148585239 TATTTTCAATTT
1 TATTTTCAATTT
148585251 ATGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:148585424 original size:81 final size:72
Alignment explanation
Indices: 148585310--148585535 Score: 258
Period size: 72 Copynumber: 3.0 Consensus size: 72
148585300 AATTTCCACT
* ** * * * *
148585310 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCATATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
148585373 TCAATTTCTG
63 TCAATTTCTG
* *
148585383 TCTTTCAAAAAAAAAATTCAACTCATATTGCTAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
148585448 AATTTCAATTTCTG
59 AATTTCAATTTCTG
*
148585462 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
148585527 ATTTCTG
66 ATTTCTG
148585534 TT
1 TT
148585536 CAAAATGAGT
Statistics
Matches: 134, Mismatches: 10, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
72 68 0.51
73 1 0.01
74 4 0.03
78 4 0.03
79 23 0.17
80 4 0.03
81 29 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTG
Found at i:148585508 original size:72 final size:72
Alignment explanation
Indices: 148585395--148585535 Score: 273
Period size: 72 Copynumber: 2.0 Consensus size: 72
148585385 TTTCAAAAAA
*
148585395 AAAATTCAACTCATATTGCTAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
148585460 TGTTTTC
66 TGTTTTC
148585467 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
148585532 TGTT
66 TGTT
148585536 CAAAATGAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:148585546 original size:49 final size:49
Alignment explanation
Indices: 148585489--148585584 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
148585479 ATATTGCGAG
* *
148585489 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
* **
148585538 AAATGAGTTGAGTCTCGGGACACGCTAAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTT
148585585 TCTCAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTAAGGTAATTTCAATTTCTGTTCA
Found at i:148585697 original size:90 final size:88
Alignment explanation
Indices: 148585571--148585754 Score: 257
Period size: 90 Copynumber: 2.1 Consensus size: 88
148585561 GCTAAGGTAA
*
148585571 TTTCAATTTCTGTTTCTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACA
1 TTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
* *
148585635 TGCTGAGGT-CTTTTCAATTTCTATT
63 CGCTGAGGTACTTTTAAATTTCTATT
148585660 TTTCAATTTCTG-TTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTTTC-T-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
148585724 GCTGAGGTATTTTTAAATTTCTGTT
64 GCTGAGGTACTTTTAAATTTCTATT
148585749 TTTCAA
1 TTTCAA
148585755 AAATCAACTC
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
88 14 0.16
89 32 0.37
90 38 0.44
91 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (88 bp):
TTTCAATTTCTGTTTCTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTACTTTTAAATTTCTATT
Found at i:148585778 original size:74 final size:73
Alignment explanation
Indices: 148585659--148586118 Score: 357
Period size: 74 Copynumber: 6.0 Consensus size: 73
148585649 CAATTTCTAT
* ** *
148585659 TTTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
148585724 GCTGAGGTA
65 GCTGAGGTA
* *
148585733 TTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
148585798 GCTGAGGTA
65 GCTGAGGTA
* * * ** * *** * *
148585807 TTGTCAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTTTTTCAA---A----AATC--AACTC-A-T-ATTGCGAGAGG--TGAGTTG
* *
148585872 AGCCTCGGGACATGTTGAGGTA
52 AGCCTCGGGACACGCTGAGGTA
* ** * * * ** * **
148585894 ATTGAAATTTCT-ATTGTCAAAAAAATCAATTCATATTGTAAGAAGTGAGTTGAGCCTCGGCTCA
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
148585958 CGTGCTGAGGTA
64 C--GCTGAGGTA
*
148585970 TTTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 TTTTCAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
148586034 GACATGCTGAGGTA
60 GACACGCTGAGGTA
* * *
148586048 ATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
148586113 CTGAGG
66 CTGAGG
148586119 AATTGTCGAT
Statistics
Matches: 299, Mismatches: 60, Indels: 54
0.72 0.15 0.13
Matches are distributed among these distances:
72 2 0.01
73 67 0.22
74 71 0.24
75 14 0.05
76 23 0.08
77 1 0.00
78 22 0.07
79 4 0.01
80 38 0.13
81 2 0.01
82 6 0.02
83 3 0.01
84 1 0.00
85 7 0.02
86 3 0.01
87 33 0.11
88 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
CTGAGGTA
Found at i:148585903 original size:87 final size:87
Alignment explanation
Indices: 148585739--148585903 Score: 269
Period size: 87 Copynumber: 1.9 Consensus size: 87
148585729 GGTATTTTTA
* *
148585739 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
*
148585804 GTATTGTCAATTTTTGTGTTTC
66 GTATTGTAAATTTTTGTGTTTC
* *
148585826 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGTTGAG
1 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
148585891 GTAATTG-AAATTT
66 GT-ATTGTAAATTT
148585904 CTATTGTCAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
87 68 0.94
88 4 0.06
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (87 bp):
AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
GTATTGTAAATTTTTGTGTTTC
Found at i:148585920 original size:161 final size:160
Alignment explanation
Indices: 148585541--148586223 Score: 753
Period size: 161 Copynumber: 4.3 Consensus size: 160
148585531 CTGTTCAAAA
* * * * *
148585541 TGAGTTGAGTCTCGGGACACGCTAAGGTAATTTCAATTTCTGTTTCTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTTCAAAAATCAACTCATATT
* * * * * * *
148585606 GCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTATTTTTCAATTTCT
66 GCAAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGTATTGTCAATTTTTGTGTTTCAATTT-T
* **
148585671 GTTCGTAAAAAAATCAACTCATATTGCGAGAGG
129 GTT-TTTCAAAAATCAACTCATATTGCGAGAGG
*
148585704 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATAT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTTCTGTTTTTCAAAAATCAACTCATAT
* *
148585769 TGCGAGAGGTGAGTTGAGCCTCGGGGCAC-GCTGAGGTATTGTCAATTTTTGTGTTTCAATTTAT
65 TGCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTATTGTCAATTTTTGTGTTTCAATTT-T
148585833 GTTTTTCAAAAATCAACTCATATTGCGAGAGG
129 GTTTTTCAAAAATCAACTCATATTGCGAGAGG
* * * * * * *
148585865 TGAGTTGAGCCTCGGGACATGTTGAGGTAATTGAAATTTCT-ATTGTCAAAAAAATCAATTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTTC--AAAAATCAACTCATA
* * * * *
148585929 TTGTAAGAAGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAA--TTTCTGTTTC-----
64 TTGCAAGAGGTGAGTTGAGCCTCGGCGCAC-TGCTGAGGTATTGTCAATTTTTGTGTTTCAATTT
*
148585987 TGTTTGTC-AAAATCAACTCATATTGCGAGAGG
128 TGTTTTTCAAAAATCAACTCATATTGCGAGAGG
* *
148586019 TGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTTCAAAAATCAACTCATATT
* * * * *
148586084 GCAAGAGGTGAGTTGAGCCTCGGGGCAC-GCTGAGGAATTGTCGATTTTTGTGTTTTAA-TTT-C
66 GCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTTGT
***** *
148586146 AAAAAAATAAATCAACTCATATTGTGAGAGG
131 TTTTCAA-AAATCAACTCATATTGCGAGAGG
* * * * *
148586177 TGAATTGAGCCTTAGGACACGCTCAGGTATTTTCAATTTCTGTTTTT
1 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTT
148586224 TTCCAATTTC
Statistics
Matches: 445, Mismatches: 61, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
151 13 0.03
153 48 0.11
154 61 0.14
155 11 0.02
157 2 0.00
158 64 0.14
159 4 0.01
160 10 0.02
161 100 0.22
162 32 0.07
163 41 0.09
164 59 0.13
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (160 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTTTCAAAAATCAACTCATATT
GCAAGAGGTGAGTTGAGCCTCGGCGCACTGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTTGT
TTTTCAAAAATCAACTCATATTGCGAGAGG
Found at i:148586093 original size:73 final size:73
Alignment explanation
Indices: 148585822--148586122 Score: 338
Period size: 73 Copynumber: 4.0 Consensus size: 73
148585812 AATTTTTGTG
* * *
148585822 TTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGT
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
148585887 TGAGGTAA
66 TGAGGTAA
** * * * * * *
148585895 TTGAAATTTCT-ATTGTCAAAAAAATCAATTCATATTGTAAGAAGTGAGTTGAGCCTCGGCTCAC
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGG--GAC
* *
148585959 GTGCTGAGGTAT
62 ATGCTGAGGTAA
* *
148585971 TTTCAATTTCTGTTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTCAATTTCTG----T-TTT-TCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG
148586035 ACATGCTGAGGTAA
60 ACATGCTGAGGTAA
* *
148586049 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
148586114 TGAGG-AA
66 TGAGGTAA
148586121 TT
1 TT
148586123 GTCGATTTTT
Statistics
Matches: 187, Mismatches: 29, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
72 10 0.05
73 58 0.31
74 37 0.20
76 20 0.11
78 24 0.13
80 34 0.18
82 2 0.01
83 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACATGC
TGAGGTAA
Done.