Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 482 of 770
Found at i:148742667 original size:18 final size:18
Alignment explanation
Indices: 148742644--148742681 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
148742634 TTAATGTGCA
148742644 TTATATTAATTATTAAAT
1 TTATATTAATTATTAAAT
148742662 TTATATTAATTATTAAAT
1 TTATATTAATTATTAAAT
148742680 TT
1 TT
148742682 TGTTAATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATATTAATTATTAAAT
Found at i:148747985 original size:38 final size:38
Alignment explanation
Indices: 148747938--148748032 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 38
148747928 TTTAAAGACT
** *
148747938 CGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCC
1 CGCAGGCTTCGTGCTGGTAAAATATCAAGGATAAATCC
* * **
148747976 CGCAAGCTTCATGCTGGTATTATATCAAGGATAAATCC
1 CGCAGGCTTCGTGCTGGTAAAATATCAAGGATAAATCC
* *
148748014 CGCAGGCCTAGTGCTGGTA
1 CGCAGGCTTCGTGCTGGTA
148748033 TTATATTCGG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (38 bp):
CGCAGGCTTCGTGCTGGTAAAATATCAAGGATAAATCC
Found at i:148748084 original size:43 final size:43
Alignment explanation
Indices: 148748036--148748272 Score: 402
Period size: 43 Copynumber: 5.5 Consensus size: 43
148748026 GCTGGTATTA
* *
148748036 TATTCGGGCCTTCGTGCCTGGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
148748079 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
148748122 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
148748165 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* **
148748208 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACTAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
148748251 TATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGC
148748273 GGGCGTAATG
Statistics
Matches: 185, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.10, C:0.24, G:0.33, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:148754410 original size:29 final size:29
Alignment explanation
Indices: 148754318--148754477 Score: 196
Period size: 29 Copynumber: 5.6 Consensus size: 29
148754308 GATTTAAGCC
* *** * *
148754318 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** *
148754347 CGCACACCCAGTGCCGTAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
148754375 CGTACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
148754404 TGCACACTTGGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
148754433 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
148754462 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
148754478 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.18
29 93 0.82
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:148762460 original size:29 final size:29
Alignment explanation
Indices: 148762396--148762556 Score: 196
Period size: 29 Copynumber: 5.6 Consensus size: 29
148762386 GATTTAAGCC
* *** * *
148762396 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * *
148762425 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
148762454 CGTACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
148762483 TGCACACTTGGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
148762512 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
148762541 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
148762557 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 114 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:148768728 original size:68 final size:70
Alignment explanation
Indices: 148768656--148768853 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
148768646 ACACCCTGTA
* * * *
148768656 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
148768718 ATAAAT
65 ATAAAT
*
148768724 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
148768789 ATAAAT
65 ATAAAT
*
148768795 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
148768854 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:148768767 original size:41 final size:41
Alignment explanation
Indices: 148768722--148768839 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
148768712 TGAAAGATAA
148768722 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
148768763 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148768793 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148768834 ATGTAG
1 ATGTAG
148768840 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:148768779 original size:71 final size:71
Alignment explanation
Indices: 148768690--148768853 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
148768680 GAGATGTATC
148768690 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148768755 AGGACA
66 AGGACA
148768761 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148768826 AGGACA
66 AGGACA
148768832 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
148768854 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:148776292 original size:68 final size:70
Alignment explanation
Indices: 148776220--148776417 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
148776210 ACACCCTGTA
* * * *
148776220 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
148776282 ATAAAT
65 ATAAAT
*
148776288 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
148776353 ATAAAT
65 ATAAAT
*
148776359 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
148776418 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:148776331 original size:41 final size:41
Alignment explanation
Indices: 148776286--148776403 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
148776276 TGAAAGATAA
148776286 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
148776327 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148776357 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
148776398 ATGTAG
1 ATGTAG
148776404 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:148776343 original size:71 final size:71
Alignment explanation
Indices: 148776254--148776417 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
148776244 GAGATGTATC
148776254 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148776319 AGGACA
66 AGGACA
148776325 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
148776390 AGGACA
66 AGGACA
148776396 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
148776418 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:148779112 original size:40 final size:39
Alignment explanation
Indices: 148779068--148779175 Score: 128
Period size: 40 Copynumber: 2.8 Consensus size: 39
148779058 TTCACAATTT
*
148779068 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCAC-A
* * *
148779108 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACA
* * * *
148779147 GCATAAATGTCTT-GGGACCTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
148779176 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 13 0.22
39 11 0.19
40 34 0.59
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACA
Found at i:148783407 original size:42 final size:41
Alignment explanation
Indices: 148783357--148783463 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 41
148783347 TTGATACCTC
* * *
148783357 TGTCCCAGACAGGGTCTTACACAAA-ATCAGATATGATGCCGA
1 TGTCCCAGACACGGTCTTACACAAATATCA-AT-CGAGGCCGA
* * *
148783399 TGTCCCAGACATGGTCTTATACATAAATATCAATCGAGGCCTA
1 TGTCCCAGACACGGTC-T-TACACAAATATCAATCGAGGCCGA
148783442 TGTCCCAGACACGGTCTTACAC
1 TGTCCCAGACACGGTCTTACAC
148783464 GATATCTCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 4 0.07
42 16 0.29
43 22 0.40
44 9 0.16
45 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACAAATATCAATCGAGGCCGA
Found at i:148785902 original size:28 final size:28
Alignment explanation
Indices: 148785862--148785918 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
148785852 CATTCAGGTG
148785862 TTAGAATATATGTTAAGAAGCATATGAT
1 TTAGAATATATGTTAAGAAGCATATGAT
*
148785890 TTAGAATATATGTTAAGAAGCATGTGAT
1 TTAGAATATATGTTAAGAAGCATATGAT
148785918 T
1 T
148785919 GATTTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (28 bp):
TTAGAATATATGTTAAGAAGCATATGAT
Found at i:148788800 original size:30 final size:30
Alignment explanation
Indices: 148788766--148788828 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
148788756 CATTCTGAGC
148788766 ATGTCCTCACAAATCACATACTTTCAGTAA
1 ATGTCCTCACAAATCACATACTTTCAGTAA
*
148788796 ATGTCCTCACTAATCACATACTTTCAGTAA
1 ATGTCCTCACAAATCACATACTTTCAGTAA
148788826 ATG
1 ATG
148788829 GAAACAGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (30 bp):
ATGTCCTCACAAATCACATACTTTCAGTAA
Found at i:148789232 original size:36 final size:36
Alignment explanation
Indices: 148789185--148789257 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
148789175 AATCAGCAAG
148789185 TTAATTTATCAAATATAACATGATATTTAATATTTT
1 TTAATTTATCAAATATAACATGATATTTAATATTTT
148789221 TTAATTTATCAAATATAACATGATATTTAATATTTT
1 TTAATTTATCAAATATAACATGATATTTAATATTTT
148789257 T
1 T
148789258 AAACAATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (36 bp):
TTAATTTATCAAATATAACATGATATTTAATATTTT
Found at i:148791007 original size:2 final size:2
Alignment explanation
Indices: 148791000--148791025 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
148790990 GCATCTACAA
148791000 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
148791026 GTACAAGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:148802473 original size:27 final size:28
Alignment explanation
Indices: 148802416--148802485 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
148802406 AAACTTGTAC
*
148802416 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
148802444 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
148802471 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
148802486 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:148802496 original size:27 final size:27
Alignment explanation
Indices: 148802416--148802497 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
148802406 AAACTTGTAC
* * *
148802416 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
148802444 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
148802471 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
148802498 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:148805860 original size:42 final size:43
Alignment explanation
Indices: 148805790--148805929 Score: 126
Period size: 42 Copynumber: 3.3 Consensus size: 43
148805780 TCTTACATGT
148805790 AATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTACACAA
* * * *
148805833 AATCAAATA-CGATGTCGA-TGTGCCAGACATGGTCTTACACCTA
1 AATCAAATATCGATG-CCATTGTCCCAGACAGGGTCTTACA-CAA
* * ** * *
148805876 AATCATATGTCGATGCCAACGTCCTAGAC-GTGGTCTTACACGA
1 AATCAAATATCGATGCCATTGTCCCAGACAG-GGTCTTACACAA
*
148805919 AA-CACATATCG
1 AATCAAATATCG
148805930 GATCCTATGT
Statistics
Matches: 78, Mismatches: 14, Indels: 11
0.76 0.14 0.11
Matches are distributed among these distances:
42 31 0.40
43 26 0.33
44 21 0.27
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTACACAA
Found at i:148806374 original size:7 final size:7
Alignment explanation
Indices: 148806347--148806386 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
148806337 ACAAACACCT
148806347 AAATTAA
1 AAATTAA
* *
148806354 ATACTTAT
1 A-AATTAA
148806362 AAATTAA
1 AAATTAA
148806369 AAATTAA
1 AAATTAA
148806376 AAATTAA
1 AAATTAA
148806383 AAAT
1 AAAT
148806387 GAAAGTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 23 0.82
8 5 0.18
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
AAATTAA
Found at i:148817351 original size:80 final size:80
Alignment explanation
Indices: 148817267--148817415 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
148817257 TATGGTAACC
* * * *
148817267 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
148817331 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
148817347 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
148817412 CCGG
66 CCGG
148817416 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:148817357 original size:40 final size:38
Alignment explanation
Indices: 148817308--148817415 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
148817298 ATCACGATTT
*
148817308 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
148817348 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
148817388 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
148817416 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:148819420 original size:42 final size:42
Alignment explanation
Indices: 148819362--148819509 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 42
148819352 GAATGCCAAA
* *
148819362 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCA-T
* * * *
148819405 GTTCTAGACA-GGTCTTACAGGAAATCAAATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCC-AT
* *
148819446 GTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAA
1 GTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCC-AT
*
148819490 GTCCCAGACATGGTGTTACA
1 GTCCCAGACATGGTCTTACA
148819510 TGAAAACACA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 15 0.17
42 31 0.36
43 13 0.15
44 28 0.32
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAT
Found at i:148819494 original size:44 final size:41
Alignment explanation
Indices: 148819354--148819509 Score: 145
Period size: 44 Copynumber: 3.7 Consensus size: 41
148819344 AGCTCATAGA
*
148819354 ATGCCAAAGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAAAGTCCCAGACATGGTCTTACA-GTAAATC-AA-ATCG
** * * * *
148819397 ATGCCACTGTTCTAGACA-GGTCTTACAGGAAATCAAATATG
1 ATGCCAAAGTCCCAGACATGGTCTTACAGTAAATCAAAT-CG
* *
148819438 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAAAGTCCCAGACATGGTCTTACA-GTAAATCA-AA-TCG
*
148819482 ATGCCAAAGTCCCAGACATGGTGTTACA
1 ATGCCAAAGTCCCAGACATGGTCTTACA
148819510 TGAAAACACA
Statistics
Matches: 91, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
40 2 0.02
41 18 0.20
42 22 0.24
43 20 0.22
44 28 0.31
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (41 bp):
ATGCCAAAGTCCCAGACATGGTCTTACAGTAAATCAAATCG
Found at i:148820850 original size:20 final size:19
Alignment explanation
Indices: 148820814--148820864 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
148820804 AAGTGCTATT
*
148820814 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
148820833 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
148820853 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
148820865 GTTGATATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:148823502 original size:29 final size:28
Alignment explanation
Indices: 148823468--148823541 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
148823458 TAATCAACCA
*
148823468 CGCACACTTAGTGCCATGTACTTT-AAAC
1 CGCACACTTAGTGCCATGCA-TTTCAAAC
*
148823496 TCGCACACTTAGTGCCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
148823525 CTGCACACTTAGTGCCA
1 C-GCACACTTAGTGCCA
148823542 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 37 0.90
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:148824199 original size:2 final size:2
Alignment explanation
Indices: 148824181--148824214 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
148824171 TGATGGCTGA
* *
148824181 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
148824215 CAACTATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:148829998 original size:31 final size:31
Alignment explanation
Indices: 148829963--148830026 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
148829953 CCTTTTCATG
148829963 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
148829994 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
148830025 TT
1 TT
148830027 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:148830269 original size:24 final size:24
Alignment explanation
Indices: 148830218--148830336 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
148830208 GCTTTATCAT
*
148830218 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
148830243 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
148830267 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
148830290 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
148830314 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
148830337 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:148830297 original size:47 final size:48
Alignment explanation
Indices: 148830218--148830336 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
148830208 GCTTTATCAT
*
148830218 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
148830267 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
148830314 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
148830337 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:148830417 original size:11 final size:11
Alignment explanation
Indices: 148830387--148830440 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
148830377 TATGATTACC
148830387 TCATGTGCATA
1 TCATGTGCATA
*
148830398 TCA--TACATA
1 TCATGTGCATA
148830407 TCATGTGCATA
1 TCATGTGCATA
*
148830418 TCA--TACAT-
1 TCATGTGCATA
148830426 TCATGTGCATA
1 TCATGTGCATA
148830437 TCAT
1 TCAT
148830441 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:148830431 original size:19 final size:20
Alignment explanation
Indices: 148830387--148830445 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
148830377 TATGATTACC
148830387 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
148830407 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
148830426 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
148830446 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:148830520 original size:25 final size:25
Alignment explanation
Indices: 148830488--148830535 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148830478 ATACATAAAC
* * *
148830488 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
148830513 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
148830536 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:148838062 original size:30 final size:31
Alignment explanation
Indices: 148838028--148838090 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
148838018 CCTTTTCATA
148838028 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
148838058 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
148838089 TT
1 TT
148838091 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:148838333 original size:24 final size:24
Alignment explanation
Indices: 148838282--148838400 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
148838272 GCTTTATCAT
*
148838282 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
148838307 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
148838331 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
148838354 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
148838378 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
148838401 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:148838361 original size:47 final size:48
Alignment explanation
Indices: 148838282--148838400 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
148838272 GCTTTATCAT
*
148838282 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
148838331 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
148838378 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
148838401 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:148838481 original size:11 final size:11
Alignment explanation
Indices: 148838451--148838504 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
148838441 TATGATTACC
148838451 TCATGTGCATA
1 TCATGTGCATA
*
148838462 TCA--TACATA
1 TCATGTGCATA
148838471 TCATGTGCATA
1 TCATGTGCATA
*
148838482 TCA--TACAT-
1 TCATGTGCATA
148838490 TCATGTGCATA
1 TCATGTGCATA
148838501 TCAT
1 TCAT
148838505 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:148838495 original size:19 final size:20
Alignment explanation
Indices: 148838451--148838509 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
148838441 TATGATTACC
148838451 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
148838471 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
148838490 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
148838510 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:148838584 original size:25 final size:25
Alignment explanation
Indices: 148838552--148838599 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
148838542 ATACATAAAC
* * *
148838552 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
148838577 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
148838600 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:148842113 original size:43 final size:42
Alignment explanation
Indices: 148842017--148842116 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
148842007 CGTTTGAGAT
*
148842017 TTACATGTAAGACCATGTTTGGGACATCGACATCGTATTTGT
1 TTACATGTAAGACCATGTTTGGGACATCGACATCGTATTTGA
* * * **
148842059 TTTCGTGTAAGACCCTGTTTGGGACAGT-GGTATCGATATTTGA
1 TTACATGTAAGACCATGTTTGGGACA-TCGACATCG-TATTTGA
148842102 TTACATGTAAGACCA
1 TTACATGTAAGACCA
148842117 AGTCTGGAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
TTACATGTAAGACCATGTTTGGGACATCGACATCGTATTTGA
Found at i:148852673 original size:25 final size:25
Alignment explanation
Indices: 148852645--148852729 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
148852635 ATGATTTTCT
148852645 TGCCTTATAGAACTTATCAATGCCC
1 TGCCTTATAGAACTTATCAATGCCC
** * *
148852670 TGCCTTGGCAT-GGTCTTA-CATGATTTCCT
1 TGCCTT---ATAGAACTTATCA--A-TGCCC
148852699 TGCCTTATAGAACTTATCAATGCCC
1 TGCCTTATAGAACTTATCAATGCCC
148852724 TGCCTT
1 TGCCTT
148852730 GGCATGGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 15 0.34
26 5 0.11
27 10 0.23
28 5 0.11
29 9 0.20
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.36
Consensus pattern (25 bp):
TGCCTTATAGAACTTATCAATGCCC
Found at i:148852921 original size:54 final size:54
Alignment explanation
Indices: 148852438--148852915 Score: 609
Period size: 54 Copynumber: 8.9 Consensus size: 54
148852428 TTTCCTTTTT
* * * * * * *
148852438 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * *** *
148852491 GAACTCACCAATGCCATGCCTTAGCATGGTCTTACATG-GGACCTTTGCCTTACA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATA
* * * *
148852545 GTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* *
148852600 GAACTTATCAATGCCACGCCTTGGCATGGTCTTACATGATTTTCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
*
148852654 GAACTTATCAATGCCCTGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
*
148852708 GAACTTATCAATGCCCTGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
148852762 GAATTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCCTATT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * * * * **
148852816 TAACTTATCAATGTCATGCCTTGGCATGGTCTTAGATGATATCCATATCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
148852870 TAACTTATCAATGCCATGCCTTGTCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
148852916 ATCTTACCAA
Statistics
Matches: 375, Mismatches: 46, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
52 2 0.01
53 40 0.11
54 289 0.77
55 42 0.11
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:148853774 original size:30 final size:31
Alignment explanation
Indices: 148853731--148853788 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
148853721 CTAACTCAAA
148853731 CTTTGACAAAATTACAATTTTACCCCTAAAC
1 CTTTGACAAAATTACAATTTTACCCCTAAAC
* ** *
148853762 CTTTG-CAGAATTATGATTTTGCCCCTA
1 CTTTGACAAAATTACAATTTTACCCCTA
148853789 GGCTCAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (31 bp):
CTTTGACAAAATTACAATTTTACCCCTAAAC
Found at i:148855865 original size:17 final size:18
Alignment explanation
Indices: 148855833--148855866 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
148855823 CCATAATGCG
148855833 TGCCCATGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
*
148855851 TGCCCGTGT-GGCCCAC
1 TGCCCATGTGGGCCCAC
148855867 TTAGCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.41, G:0.29, T:0.18
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:148858546 original size:28 final size:28
Alignment explanation
Indices: 148858506--148858566 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
148858496 CAGTATCGGT
* *
148858506 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTGGGCCTAAGCCCCATACAGTA
* *
148858534 ACAGTGTGGGCCTAAGCCCCATGCAGTA
1 ACAGTCTGGGCCTAAGCCCCATACAGTA
*
148858562 TCAGT
1 ACAGT
148858567 ACAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCCATACAGTA
Found at i:148858761 original size:27 final size:26
Alignment explanation
Indices: 148858721--148858802 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 26
148858711 AGCTGTCAGA
*
148858721 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
148858748 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
148858775 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
148858802 A
1 A
148858803 CTGTAACGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:148860082 original size:46 final size:46
Alignment explanation
Indices: 148859912--148860087 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
148859902 TGTAACCTGC
* * * *
148859912 CCATAAGCGAACTTGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCTCAT
* * * * *
148859958 CCGTAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTCGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCTC-AT
* *** * *
148860004 ACATCTCTCGAACTCAGACTCAACCCAACGAGTTCGGACGTTCTCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGTTCTCAT
148860051 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
148860088 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 26, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
45 3 0.03
46 62 0.62
47 32 0.32
48 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCTCAT
Found at i:148861553 original size:26 final size:25
Alignment explanation
Indices: 148861491--148861595 Score: 95
Period size: 27 Copynumber: 4.0 Consensus size: 25
148861481 TACATAACAT
* *
148861491 AAGGGCATAATCGTCATTTTACCAAAC
1 AAGGGCATTA-CGTCATTTTACC-TAC
*
148861518 AAGGGTATTACGATCATTTTACCTAC
1 AAGGGCATTACG-TCATTTTACCTAC
*
148861544 AAGGGCATTACTGTCATTTTACCCT-G
1 AAGGGCATTAC-GTCATTTTA-CCTAC
*
148861570 AAGTGGTATTACGATCATTTTACCTA
1 AAG-GGCATTACG-TCATTTTACCTA
148861596 TTTTGGGGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
26 29 0.44
27 37 0.56
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (25 bp):
AAGGGCATTACGTCATTTTACCTAC
Found at i:148864565 original size:40 final size:39
Alignment explanation
Indices: 148864520--148864727 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
148864510 CGGAATACAA
*
148864520 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
148864560 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
148864600 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
148864640 CCGGATGTAGTCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
148864680 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
148864720 CCGGATAT
1 CCGGATAT
148864728 CATTCAATTG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:148864660 original size:80 final size:81
Alignment explanation
Indices: 148864520--148864725 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
148864510 CGGAATACAA
* * *
148864520 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
148864584 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
148864600 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TCG-CTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
148864663 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
148864680 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
148864726 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 103 0.95
81 2 0.02
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:148872588 original size:40 final size:39
Alignment explanation
Indices: 148872543--148872750 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
148872533 CGGAATACAA
*
148872543 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
148872583 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
148872623 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
148872663 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
148872703 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
148872743 CCGGATAT
1 CCGGATAT
148872751 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:148872683 original size:80 final size:81
Alignment explanation
Indices: 148872543--148872748 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
148872533 CGGAATACAA
* * *
148872543 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
148872607 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
148872623 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
148872686 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
148872703 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
148872749 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:148875775 original size:49 final size:51
Alignment explanation
Indices: 148875701--148875846 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 51
148875691 ACTATTGTGA
* * *
148875701 GGTCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAA-T-T
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
* * * *
148875750 GGTCACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
*
148875801 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
148875847 GCTTCGGCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 40 0.48
50 1 0.01
51 42 0.51
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (51 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGT
Found at i:148887038 original size:17 final size:18
Alignment explanation
Indices: 148886996--148887044 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
148886986 AGTTGAAAAG
148886996 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
148887015 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
148887032 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
148887045 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:148887933 original size:40 final size:40
Alignment explanation
Indices: 148887867--148888033 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
148887857 AAATTGAATG
* * *
148887867 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
148887906 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
148887946 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
148887986 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
148888026 ATATCCGG
1 ATATCCGG
148888034 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:148896355 original size:47 final size:46
Alignment explanation
Indices: 148896304--148896505 Score: 151
Period size: 47 Copynumber: 4.3 Consensus size: 46
148896294 CTAGGCACGA
*
148896304 TCTTATACTGGCTCAT-ATCTCAAGTCGATGCCATGTCCCAGACATGG
1 TCTTACACTGGCTCATCATCTCAAGTCGATG-CATGTCCCAGACAT-G
* * ** *
148896351 TCTTACACTGACT-GTCATCTTGTAGTCGATGCATGTCCCAGAGATG
1 TCTTACACTGGCTCATCATC-TCAAGTCGATGCATGTCCCAGACATG
* * * * * *
148896397 ACTTACACTAGC-CCTCGTCTCAATGTCGATGCCATATCCCAAACATGG
1 TCTTACACTGGCTCATCATCTCAA-GTCGATG-CATGTCCCAGACAT-G
* * ** *
148896445 TCTTACACTAGCTC-TCATAATGTAGCCGATGCATGTCCCAGACATG
1 TCTTACACTGGCTCATCAT-CTCAAGTCGATGCATGTCCCAGACATG
*
148896491 TCTTACACTAGCTCA
1 TCTTACACTGGCTCA
148896506 CACACAAATG
Statistics
Matches: 122, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 37 0.30
47 50 0.41
48 30 0.25
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
TCTTACACTGGCTCATCATCTCAAGTCGATGCATGTCCCAGACATG
Found at i:148896496 original size:94 final size:93
Alignment explanation
Indices: 148896321--148896502 Score: 267
Period size: 94 Copynumber: 1.9 Consensus size: 93
148896311 CTGGCTCATA
* * * ** *
148896321 TCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTGTCATCTTGTAGTCGATGCATG
1 TCTCAAGTCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCATAATGTAGCCGATGCATG
*
148896386 TCCCAGAGATGACTTACACTAGCCCTCG
66 TCCCAGACATGACTTACACTAGCCCTCG
148896414 TCTCAATGTCGATGCCATATCCCAAACATGGTCTTACACT-AGCTCTCATAATGTAGCCGATGCA
1 TCTCAA-GTCGATGCCATATCCCAAACATGGTCTTACACTGA-CTCTCATAATGTAGCCGATGCA
*
148896478 TGTCCCAGACATGTCTTACACTAGC
64 TGTCCCAGACATGACTTACACTAGC
148896503 TCACACACAA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
93 7 0.09
94 72 0.91
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (93 bp):
TCTCAAGTCGATGCCATATCCCAAACATGGTCTTACACTGACTCTCATAATGTAGCCGATGCATG
TCCCAGACATGACTTACACTAGCCCTCG
Found at i:148896504 original size:46 final size:48
Alignment explanation
Indices: 148896329--148896502 Score: 168
Period size: 47 Copynumber: 3.7 Consensus size: 48
148896319 TATCTCAAGT
* * **
148896329 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTGTCATCTTGTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCCTCTCATAATGTAG
* *
148896376 TCGATG-CATGTCCCAGAGAT-GACTTACACTAGCCCTCGTC-TCAATGT--
1 -CGATGCCATGTCCCAGACATGGTCTTACACTAG-CCTC-TCAT-AATGTAG
* *
148896423 CGATGCCATATCCCAAACATGGTCTTACACTAG-CTCTCATAATGTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCCTCTCATAATGTAG
148896470 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 -CGATGCCATGTCCCAGACATGGTCTTACACTAGC
148896503 TCACACACAA
Statistics
Matches: 103, Mismatches: 12, Indels: 23
0.75 0.09 0.17
Matches are distributed among these distances:
45 7 0.07
46 30 0.29
47 37 0.36
48 24 0.23
49 5 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCCTCTCATAATGTAG
Found at i:148905879 original size:16 final size:16
Alignment explanation
Indices: 148905858--148905890 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
148905848 TTGTAACGCC
148905858 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
*
148905874 CCAAAAATCCCGAAAT
1 CCAAAAATCCCAAAAT
148905890 C
1 C
148905891 TTAAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.33, G:0.03, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:148907461 original size:29 final size:30
Alignment explanation
Indices: 148907378--148907461 Score: 111
Period size: 29 Copynumber: 2.9 Consensus size: 30
148907368 GCATGAATAT
* *
148907378 AATATGATTTGGGCCTA-ATGGGCCATATG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
*
148907407 AATGTGAATTGGGCCTAG-TGGGCCATAAG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
*
148907436 AATATGAATTGGGCC-AGATGGCCCAT
1 AATATGAATTGGGCCTAGATGGGCCAT
148907462 TTGGATAAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.04
29 46 0.96
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (30 bp):
AATATGAATTGGGCCTAGATGGGCCATAAG
Found at i:148910797 original size:46 final size:46
Alignment explanation
Indices: 148910694--148910918 Score: 150
Period size: 46 Copynumber: 4.8 Consensus size: 46
148910684 GGTAAGGTGT
** * *
148910694 CGATGCCATGTCCTAGACATGATCTTTTACTGGCTCATATATCAAGT
1 CGATGCCATGTCCTAGACATG-TCTTACACTGGCTCACATATCAAGG
* *
148910741 CGATGCCATGTCCTAGACATGTCTTACACTGGCTTACATCTCAAGG
1 CGATGCCATGTCCTAGACATGTCTTACACTGGCTCACATATCAAGG
* * * * *** * **
148910787 CTGATG-CATGTCCCAAACATGTCTTACACTAGCCCTTGTCTCAATAC
1 C-GATGCCATGTCCTAGACATGTCTTACACTGGCTCACATATCAA-GG
* * * ** **
148910834 CGATGCCATATCCCAGATATGGTCTTACACTGGCTCTTATAAT-GTGG
1 CGATGCCATGTCCTAGACAT-GTCTTACACTGGCTCACAT-ATCAAGG
* *
148910881 TCGATG-CATGTCCCAGACATGTCTTACACTAGCTCACA
1 -CGATGCCATGTCCTAGACATGTCTTACACTGGCTCACA
148910919 CACGAATGAC
Statistics
Matches: 140, Mismatches: 32, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
46 69 0.49
47 49 0.35
48 21 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
CGATGCCATGTCCTAGACATGTCTTACACTGGCTCACATATCAAGG
Found at i:148918560 original size:42 final size:43
Alignment explanation
Indices: 148918463--148918585 Score: 212
Period size: 42 Copynumber: 2.9 Consensus size: 43
148918453 TTTATTGGAA
* *
148918463 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGG
148918506 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAG-GGCGCTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGG
*
148918548 AAAAGCGTCGCTAAAGGTCAAGGCTTTTAGCGGCGCTT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTT
148918586 TTTTTACAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
42 40 0.53
43 36 0.47
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGG
Found at i:148918605 original size:43 final size:43
Alignment explanation
Indices: 148918463--148918587 Score: 200
Period size: 43 Copynumber: 2.9 Consensus size: 43
148918453 TTTATTGGAA
*
148918463 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCG-TTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTT-TGGG
*
148918506 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAG-GGCGCTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTGGG
*
148918548 AAAAGCGTCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTT
148918588 TTTACAAACG
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
42 37 0.49
43 39 0.51
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTGGG
Found at i:148924554 original size:40 final size:40
Alignment explanation
Indices: 148924463--148924573 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
148924453 ATAACCACGT
* *
148924463 GCACGAATGCCTTCGGGTCTTAGCCCAGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
148924503 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
148924543 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
148924574 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:148924591 original size:40 final size:40
Alignment explanation
Indices: 148924447--148924610 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
148924437 CGGAATACAA
**
148924447 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* * **
148924487 CCAGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
148924527 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
148924567 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
148924607 CCGG
1 CCGG
148924611 GTATCATTCA
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
39 2 0.02
40 96 0.98
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:148937010 original size:28 final size:29
Alignment explanation
Indices: 148936909--148937030 Score: 158
Period size: 29 Copynumber: 4.2 Consensus size: 29
148936899 GTGACGAGAT
*
148936909 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
148936938 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
148936967 AGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * *
148936995 TGACACTATA-TGTGCAAGCTGGAAAAATA
1 TGGCACTA-AGTGTGCATGCTGGAAATATA
*
148937024 CGGCACT
1 TGGCACT
148937031 GGGTGTGCGA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
28 23 0.27
29 61 0.73
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:148937038 original size:57 final size:58
Alignment explanation
Indices: 148936910--148937030 Score: 165
Period size: 57 Copynumber: 2.1 Consensus size: 58
148936900 TGACGAGATT
* * ** *
148936910 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
*
148936968 GGCACTAAGTGTGCATGCTGGAAA-ATATGACACTATA-TGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTA-AGTGTGCAAGCTGGAAAAATAA
148937025 GGCACT
1 GGCACT
148937031 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 32 0.57
58 24 0.43
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:148950384 original size:6 final size:6
Alignment explanation
Indices: 148950373--148950419 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
148950363 AAGATACTGT
* *
148950373 AGAAAA AGAAAA AGAACA AGAAAA A-AAGAG AGAAAA AGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAA-AA AGAAAA AGAAAA AGAAA
148950420 GAAAATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
5 2 0.06
6 31 0.89
7 2 0.06
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:148950430 original size:16 final size:15
Alignment explanation
Indices: 148950373--148950431 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
148950363 AAGATACTGT
148950373 AGAAAAAGAAAAAG-A
1 AGAAAAA-AAAAAGAA
* * *
148950388 ACAAGAAAAAAAGAG
1 AGAAAAAAAAAAGAA
148950403 AGAAAAAGAAAAAGAA
1 AGAAAAA-AAAAAGAA
148950419 AGAAAATAAAAAA
1 AGAAAA-AAAAAA
148950432 AAATAAAGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
14 6 0.17
15 10 0.29
16 18 0.51
17 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (15 bp):
AGAAAAAAAAAAGAA
Found at i:148950432 original size:24 final size:24
Alignment explanation
Indices: 148950381--148950434 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
148950371 GTAGAAAAAG
* *
148950381 AAAAAGAACAAGAAAAAAAGAGAG
1 AAAAAGAAAAAGAAAAAAAGAGAA
* *
148950405 AAAAAGAAAAAGAAAGAAAATAAAA
1 AAAAAGAAAAAGAAA-AAAAGAGAA
148950430 AAAAA
1 AAAAA
148950435 TAAAGGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAAAGAAAAAGAAAAAAAGAGAA
Found at i:148950444 original size:36 final size:36
Alignment explanation
Indices: 148950373--148950444 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 36
148950363 AAGATACTGT
* *
148950373 AGAAAAAGAAAAAGAACAAGAAAAAAAGAGAGAAAA
1 AGAAAAAGAAAAAGAACAAAAAAAAAAAAGAGAAAA
*
148950409 AGAAAAAGAAAGAA-AATAAAAAAAAATAAAG-GAAAA
1 AGAAAAAGAAA-AAGAACAAAAAAAAA-AAAGAGAAAA
148950445 GGTGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 26 0.84
37 5 0.16
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (36 bp):
AGAAAAAGAAAAAGAACAAAAAAAAAAAAGAGAAAA
Found at i:148951063 original size:17 final size:18
Alignment explanation
Indices: 148951041--148951074 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
148951031 CACATTGAAG
148951041 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
148951058 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
148951075 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:148953439 original size:2 final size:2
Alignment explanation
Indices: 148953432--148953457 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
148953422 CCACCAGAAC
148953432 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
148953458 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:148958353 original size:30 final size:30
Alignment explanation
Indices: 148958308--148958367 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
148958298 ATTTAATACG
*
148958308 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
148958338 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
148958368 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:148975901 original size:27 final size:28
Alignment explanation
Indices: 148975840--148975909 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
148975830 AAATTTGTAC
* *
148975840 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
148975868 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
148975895 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
148975910 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:148986662 original size:14 final size:14
Alignment explanation
Indices: 148986645--148986684 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
148986635 CGAATGGAAT
*
148986645 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
148986659 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
148986673 GATATGAACAAA
1 GGTAGGAACAAA
148986685 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:148987760 original size:14 final size:14
Alignment explanation
Indices: 148987743--148987780 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
148987733 AATGGAATGG
*
148987743 TAGGAACGAAAGGA
1 TAGGAACAAAAGGA
148987757 TAGGAACAAAAGGA
1 TAGGAACAAAAGGA
*
148987771 TATGAACAAA
1 TAGGAACAAA
148987781 TTGGTCAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.55, C:0.08, G:0.26, T:0.11
Consensus pattern (14 bp):
TAGGAACAAAAGGA
Found at i:148994770 original size:10 final size:10
Alignment explanation
Indices: 148994755--148994781 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
148994745 TAAGTTGAAG
148994755 TTGAGCTGAT
1 TTGAGCTGAT
148994765 TTGAGCTGAT
1 TTGAGCTGAT
148994775 TTGAGCT
1 TTGAGCT
148994782 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:148997736 original size:21 final size:20
Alignment explanation
Indices: 148997698--148997746 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
148997688 AAACGAGCTC
148997698 GTTGAGCTAAGTTAAGTTGAA
1 GTTGAGCTAAGTTAAGTTG-A
* * *
148997719 GTTGAGCTGATTTGAGTTGA
1 GTTGAGCTAAGTTAAGTTGA
*
148997739 TTTGAGCT
1 GTTGAGCT
148997747 TGAAGGAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.24, C:0.06, G:0.31, T:0.39
Consensus pattern (20 bp):
GTTGAGCTAAGTTAAGTTGA
Found at i:148998157 original size:14 final size:14
Alignment explanation
Indices: 148998140--148998168 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
148998130 CGAATGGAAT
148998140 GGTAGGAACGAAAG
1 GGTAGGAACGAAAG
148998154 GGTAGGAACGAAAG
1 GGTAGGAACGAAAG
148998168 G
1 G
148998169 ATATGAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.45, T:0.07
Consensus pattern (14 bp):
GGTAGGAACGAAAG
Found at i:148998176 original size:14 final size:14
Alignment explanation
Indices: 148998142--148998176 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
148998132 AATGGAATGG
*
148998142 TAGGAACGAAAGGG
1 TAGGAACGAAAGGA
148998156 TAGGAACGAAAGGA
1 TAGGAACGAAAGGA
*
148998170 TATGAAC
1 TAGGAAC
148998177 AAATTGGTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.09, G:0.34, T:0.11
Consensus pattern (14 bp):
TAGGAACGAAAGGA
Found at i:148999256 original size:14 final size:14
Alignment explanation
Indices: 148999239--148999278 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
148999229 CGAATGGAAT
*
148999239 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
148999253 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
148999267 GATATGAACAAA
1 GGTAGGAACAAA
148999279 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:149003039 original size:21 final size:20
Alignment explanation
Indices: 149003001--149003049 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
149002991 AAACGAGCTC
149003001 GTTGAGCTAAGTTAAGTTGAA
1 GTTGAGCTAAGTTAAGTTG-A
* * *
149003022 GTTGAGCTGATTTGAGTTGA
1 GTTGAGCTAAGTTAAGTTGA
*
149003042 TTTGAGCT
1 GTTGAGCT
149003050 TGAAGGAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.24, C:0.06, G:0.31, T:0.39
Consensus pattern (20 bp):
GTTGAGCTAAGTTAAGTTGA
Found at i:149003460 original size:14 final size:14
Alignment explanation
Indices: 149003443--149003482 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
149003433 CGAATGGAAT
*
149003443 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
149003457 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
149003471 GATATGAACAAA
1 GGTAGGAACAAA
149003483 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:149005039 original size:46 final size:45
Alignment explanation
Indices: 149004989--149005164 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
149004979 TGGTTGAGCA
149004989 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
149005035 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
149005082 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
149005128 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
149005165 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:149005145 original size:93 final size:93
Alignment explanation
Indices: 149004986--149005156 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
149004976 GGATGGTTGA
*
149004986 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
149005051 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
149005079 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
149005143 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
149005157 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:149008104 original size:15 final size:15
Alignment explanation
Indices: 149008084--149008139 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
149008074 GTATCTTGGG
149008084 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
149008099 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
149008114 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
149008129 TTTCTTTATTC
1 TTTCTTTATTC
149008140 AGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:149014704 original size:30 final size:30
Alignment explanation
Indices: 149014670--149014768 Score: 103
Period size: 30 Copynumber: 3.3 Consensus size: 30
149014660 TAAACTAAAA
149014670 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
149014700 TGAGCTGAGGC-TAAACTCCTAAGCTAAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
149014730 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
149014760 TGAGCTAAG
1 TGAGCTAAG
149014769 AGTGAGCTTG
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
29 2 0.04
30 45 0.83
31 7 0.13
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:149019875 original size:10 final size:10
Alignment explanation
Indices: 149019862--149019909 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
149019852 CACTTTTTTT
149019862 TTTTTTTTAA
1 TTTTTTTTAA
*
149019872 -TTTTTTTGA
1 TTTTTTTTAA
149019881 TTTTTTTTCGAA
1 TTTTTTTT--AA
*
149019893 TTTTTTTGAA
1 TTTTTTTTAA
149019903 TTTTTTT
1 TTTTTTT
149019910 AACTTGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
9 8 0.25
10 16 0.50
12 8 0.25
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:149019886 original size:21 final size:21
Alignment explanation
Indices: 149019860--149019909 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
149019850 ATCACTTTTT
**
149019860 TTTTTTTTTTAATTTTTTTGA
1 TTTTTTTTCGAATTTTTTTGA
149019881 TTTTTTTTCGAATTTTTTTGA
1 TTTTTTTTCGAATTTTTTTGA
*
149019902 ATTTTTTT
1 TTTTTTTT
149019910 AACTTGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.02, G:0.06, T:0.78
Consensus pattern (21 bp):
TTTTTTTTCGAATTTTTTTGA
Found at i:149022731 original size:779 final size:779
Alignment explanation
Indices: 149021041--149024050 Score: 5819
Period size: 779 Copynumber: 3.9 Consensus size: 779
149021031 CTTCATGCAT
149021041 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
149021106 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
149021171 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
149021236 ATGTCCATTGTGTTTCTACAAGAAATGTGAACA-AATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
149021300 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
* *
149021365 ATAACTAATGTGAACTAAATTTAATATGTAGGATATTAATTAGCTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
149021430 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
149021495 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
149021560 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAG-CCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
149021624 AAGTTC-GCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
149021688 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
149021753 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
149021817 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
149021882 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
149021947 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
149022012 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
149022077 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
*
149022142 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAGTTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
149022207 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
149022272 TAAACCTGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
149022337 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
149022402 AAGTTCAGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
149022467 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
149022532 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
149022596 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
149022661 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
149022726 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
149022791 ATGTCCATTGCGTTTCTACATGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
149022856 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
*
149022921 ATAGCTAATGTGAACTAGATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
*
149022986 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCAACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
* *
149023051 TAAAACCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTAGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
149023116 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
149023181 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGAATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
149023246 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
149023311 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
* *
149023375 CTGTGAGTGTCCTCTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
149023440 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
149023505 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
* *
149023570 ATGTCCATTGCATTTCTACATGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
149023635 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
*
149023700 ATAGTTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
149023765 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
149023830 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
*
149023895 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGATGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
149023960 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGGCATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
*
149024025 CACTCATGCTGAACTAAAGCTATAAC
651 CACACATGCTGAACTAAAGCTATAAC
149024051 TGATACAACC
Statistics
Matches: 2205, Mismatches: 26, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
776 227 0.10
777 324 0.15
778 33 0.01
779 1621 0.74
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (779 bp):
GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGATCCCTTGTGATCGG
CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
Found at i:149025890 original size:14 final size:13
Alignment explanation
Indices: 149025870--149025905 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
149025860 ATACAAGTTT
149025870 GAAAAAAAAATTC
1 GAAAAAAAAATTC
149025883 GAAAAAAAAATTC
1 GAAAAAAAAATTC
149025896 GAAAAAAAAA
1 GAAAAAAAAA
149025906 GAGTGATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.11
Consensus pattern (13 bp):
GAAAAAAAAATTC
Found at i:149037873 original size:29 final size:29
Alignment explanation
Indices: 149037839--149037968 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
149037829 CCCTCGAGCT
** * *
149037839 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* * * *
149037868 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* *
149037897 TGCACACTTAGTGCCTTA-ATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
*
149037925 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
149037954 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
149037969 AATCTCGTCA
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 25 0.28
29 64 0.72
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:149037920 original size:57 final size:57
Alignment explanation
Indices: 149037859--149037968 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
149037849 GTGCCGTATT
** * * * *
149037859 TTTCCAGCTTGCACACATAGTGTCGTATTTTTCCAGCATGCACACTTAGTGCCTTAA
1 TTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTTAA
*
149037916 TTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
149037969 AATCTCGTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (57 bp):
TTTCCAGCACGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTTAA
Found at i:149037988 original size:57 final size:56
Alignment explanation
Indices: 149037870--149037988 Score: 123
Period size: 57 Copynumber: 2.1 Consensus size: 56
149037860 TTCCAGCTTG
* * * * * * *
149037870 CACACATAGTGTCGTATTTTTCCAGCATGCACACTTAGTGCCTTAATTTCCAGCACG
1 CACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC-TAATCTCCACCACA
* *
149037927 CACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC-AATCTCGTCACCATA
1 CACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTAATCTC--CACCACA
149037984 CACAC
1 CACAC
149037989 GTATTGCCCG
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
55 5 0.10
57 46 0.90
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (56 bp):
CACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCTAATCTCCACCACA
Found at i:149038800 original size:143 final size:141
Alignment explanation
Indices: 149038610--149038904 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
149038600 AAATTCTATA
149038610 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
149038675 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
149038740 GAAGACAACAT
131 GAAAACAACAT
149038751 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
149038816 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
149038881 AGGAAAACAACAT
129 AGGAAAACAACAT
149038894 GCATGGCCGAA
1 GCATGGCCGAA
149038905 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:149040310 original size:38 final size:39
Alignment explanation
Indices: 149040190--149040331 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
149040180 GAATGTTCGA
149040190 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
149040229 GTGATATCCGGGCTAAGCCCGAAGGCAATT-TGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
149040267 ATGATATCC-GGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
149040305 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
149040332 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
37 20 0.22
38 28 0.30
39 36 0.39
40 9 0.10
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:149048339 original size:40 final size:39
Alignment explanation
Indices: 149048227--149048331 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
149048217 GAATGTTCGA
149048227 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
149048266 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
149048305 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
149048332 CTTTGTGCGG
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
39 55 0.86
40 9 0.14
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:149050775 original size:2 final size:2
Alignment explanation
Indices: 149050768--149050803 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
149050758 CTTAGTAAGT
*
149050768 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
149050804 CAGCAACAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:149051211 original size:47 final size:47
Alignment explanation
Indices: 149051064--149051322 Score: 186
Period size: 47 Copynumber: 5.4 Consensus size: 47
149051054 CGCTGCCATA
* ** * **
149051064 TCCCAGACATGGTCTTATGCTGGCTATCTTCATCGAGGCCGATGCCATG
1 TCCCAAACAT-GTCTTACACTGGCTATCATCATCGAGGCTAATG-CATG
* * * * *
149051113 TCCCAAACATGGTCTTACACTAGCTCTCGTGTAT--ATGTTCTAATGCATG
1 TCCCAAACAT-GTCTTACACTGGCTATCAT-CATCGA-G-GCTAATGCATG
* *
149051162 TCCCAAACAAGTCTTACATTGGCTATCATCATCGAGGCTAATGCATG
1 TCCCAAACATGTCTTACACTGGCTATCATCATCGAGGCTAATGCATG
* * * ** *
149051209 TCCCAGACATGTCTTACACTGGC-ACTCATC-TCTACGCCGATGCCATA
1 TCCCAAACATGTCTTACACTGGCTA-TCATCATCGAGGCTAATG-CATG
* * *
149051256 TCCCAAACATGGTCTTACACTGGCTATCTTAAT-GTGGCTAATGCATG
1 TCCCAAACAT-GTCTTACACTGGCTATCATCATCGAGGCTAATGCATG
* *
149051303 TCCTAGACATGTCTTACACT
1 TCCCAAACATGTCTTACACT
149051323 AGCCCTCGTC
Statistics
Matches: 164, Mismatches: 36, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
46 19 0.12
47 60 0.37
48 38 0.23
49 41 0.25
50 6 0.04
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
TCCCAAACATGTCTTACACTGGCTATCATCATCGAGGCTAATGCATG
Found at i:149051311 original size:94 final size:95
Alignment explanation
Indices: 149051057--149051374 Score: 302
Period size: 94 Copynumber: 3.3 Consensus size: 95
149051047 AAGTTTCCGC
* ** * * ** *
149051057 TGCCATATCCCAGACATGGTCTTATGCTGGCTATCTTCATCGAGGCCGATGCCATGTCCCAAACA
1 TGCCATATCCCAAACATGGTCTTACACTGGCTATCATAATCGAGGCTAATG-CATGTCCCAGACA
* * * * **
149051122 TGGTCTTACACTAGCTCTCGTGT-ATATGTTCTAA
65 T-GTCTTACACTAGCACTCATCTCA-ACG--CCGA
* * * *
149051156 TG-CATGTCCCAAACA-AGTCTTACATTGGCTATCATCATCGAGGCTAATGCATGTCCCAGACAT
1 TGCCATATCCCAAACATGGTCTTACACTGGCTATCATAATCGAGGCTAATGCATGTCCCAGACAT
* *
149051219 GTCTTACACTGGCACTCATCTCTACGCCGA
66 GTCTTACACTAGCACTCATCTCAACGCCGA
* * *
149051249 TGCCATATCCCAAACATGGTCTTACACTGGCTATCTTAAT-GTGGCTAATGCATGTCCTAGACAT
1 TGCCATATCCCAAACATGGTCTTACACTGGCTATCATAATCGAGGCTAATGCATGTCCCAGACAT
* * *
149051313 GTCTTACACTAGCCCTCGTCTCAATGCCGA
66 GTCTTACACTAGCACTCATCTCAACGCCGA
* * *
149051343 TGCCATTTCCCAGACATGGTCTTATACTGGCT
1 TGCCATATCCCAAACATGGTCTTACACTGGCT
149051375 CTCACATAAC
Statistics
Matches: 183, Mismatches: 33, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
93 4 0.02
94 88 0.48
95 38 0.21
96 13 0.07
97 27 0.15
98 11 0.06
99 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (95 bp):
TGCCATATCCCAAACATGGTCTTACACTGGCTATCATAATCGAGGCTAATGCATGTCCCAGACAT
GTCTTACACTAGCACTCATCTCAACGCCGA
Found at i:149051355 original size:141 final size:146
Alignment explanation
Indices: 149051057--149051378 Score: 354
Period size: 141 Copynumber: 2.2 Consensus size: 146
149051047 AAGTTTCCGC
* * * *
149051057 TGCCATATCCCAGACATGGTCTTATGCTGGCTA-TCTTCATCGAGGCCGATGCCATGTCCCAAAC
1 TGCCATATCCCAGACATGGTCTTATACTGGC-ACTCATCATCGACGCCGATGCCATATCCCAAAC
* * * * *
149051121 ATGGTCTTACACTAGCTCTCGTGTATATGTTCTAATGCATGTCCCAAACAAGTCTTACATTGGCT
65 ATGGTCTTACACTAGCTATCGTGTATATGTGCTAATGCATGTCCCAAACAAGTCTTACACTAGCC
* *
149051186 ATCATCATCGAGGCTAA
130 ATCATCATCAAGGCCAA
* * *
149051203 TG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATC-TCTACGCCGATGCCATATCCCAAACA
1 TGCCATATCCCAGACATGGTCTTATACTGGCACTCATCATCGACGCCGATGCCATATCCCAAACA
* * * *
149051265 TGGTCTTACACTGGCTATC-T-TA-ATGTGGCTAATGCATGTCCTAGACATGTCTTACACTAGCC
66 TGGTCTTACACTAGCTATCGTGTATATGT-GCTAATGCATGTCCCAAACAAGTCTTACACTAGCC
* * * *
149051327 CTCGTC-TCAATGCCGA
130 ATCATCATCAAGGCCAA
* *
149051343 TGCCATTTCCCAGACATGGTCTTATACTGGCTCTCA
1 TGCCATATCCCAGACATGGTCTTATACTGGCACTCA
149051379 CATAACCCAA
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
140 12 0.08
141 47 0.32
142 17 0.12
143 41 0.28
144 15 0.10
145 13 0.09
146 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (146 bp):
TGCCATATCCCAGACATGGTCTTATACTGGCACTCATCATCGACGCCGATGCCATATCCCAAACA
TGGTCTTACACTAGCTATCGTGTATATGTGCTAATGCATGTCCCAAACAAGTCTTACACTAGCCA
TCATCATCAAGGCCAA
Found at i:149051358 original size:47 final size:47
Alignment explanation
Indices: 149051209--149051371 Score: 129
Period size: 47 Copynumber: 3.5 Consensus size: 47
149051199 CTAATGCATG
* *
149051209 TCCCAGACAT-GTCTTACACTGGCACTCATCTCTACGCCGATGCCATA
1 TCCCAGACATGGTCTTACACT-GCACTCATCTCAATGCCGATGCCATA
* * * ** *
149051256 TCCCAAACATGGTCTTACACTG-GCT-ATCTTAATGTGGCTAATG-CATG
1 TCCCAGACATGGTCTTACACTGCACTCATCTCAA--T-GCCGATGCCATA
* * * *
149051303 TCCTAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATT
1 TCCCAGACATGGTCTTACACT-GCACTCATCTCAATGCCGATGCCATA
*
149051350 TCCCAGACATGGTCTTATACTG
1 TCCCAGACATGGTCTTACACTG
149051372 GCTCTCACAT
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
45 5 0.06
46 17 0.19
47 36 0.40
48 26 0.29
49 5 0.06
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGCACTCATCTCAATGCCGATGCCATA
Found at i:149066136 original size:47 final size:48
Alignment explanation
Indices: 149065931--149066245 Score: 225
Period size: 49 Copynumber: 6.6 Consensus size: 48
149065921 AAGTTTCCGC
* *
149065931 TGCCATATCCCAGACATGGTCTTACGCTGGCTATCTCCATCGAGGCCGA
1 TGCCATGTCCCAGACA-GGTCTTACACTGGCTATCTCCATCGAGGCCGA
* **
149065980 TGCCATATCCCAGACATGGTCTTATGCTGGCTATCTCCATCGAGGCCGA
1 TGCCATGTCCCAGACA-GGTCTTACACTGGCTATCTCCATCGAGGCCGA
* * ** ** * *
149066029 TGTCATGTCCCAGACATGGTCTTACACTAGCTCCCGTGTATACG-TGCTGA
1 TGCCATGTCCCAGACA-GGTCTTACACTGGCTATC-TCCAT-CGAGGCCGA
* * *
149066079 TG-CATGTCCCAGACACGTCTTAAACTGGCTATCAT-CATCGGGGCCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGGCTATC-TCCATCGAGGCCGA
* * * * *
149066126 TG-CATGTCCCAAACATGTCTTACACTGGC-A-CT-CATCTCTACGCTGA
1 TGCCATGTCCCAGACAGGTCTTACACTGGCTATCTCCA--TCGAGGCCGA
* * ** * **
149066172 TGCCATGTCCCAGACATGATCTTACACTAGCTATCTTAAT-GTGGCTAA
1 TGCCATGTCCCAGACA-GGTCTTACACTGGCTATCTCCATCGAGGCCGA
*
149066220 TG-CATGTCCCAGACATGTCTTACACT
1 TGCCATGTCCCAGACAGGTCTTACACT
149066246 AGCCTTCGTC
Statistics
Matches: 217, Mismatches: 39, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
44 3 0.01
45 1 0.00
46 20 0.09
47 57 0.26
48 31 0.14
49 91 0.42
50 11 0.05
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
TGCCATGTCCCAGACAGGTCTTACACTGGCTATCTCCATCGAGGCCGA
Found at i:149066226 original size:94 final size:94
Alignment explanation
Indices: 149065978--149066289 Score: 258
Period size: 94 Copynumber: 3.3 Consensus size: 94
149065968 CATCGAGGCC
* ** * * * * *
149065978 GATGCCATATCCCAGACATGGTCTTATGCTGGCTATC-TCCATCGAGGCCGATGTCATGTCCCAG
1 GATGCCATGTCCCAGACAT-GTCTTAAACTAGCTATCAT-AATCGGGGCCAATG-CATGTCCCAA
* * *
149066042 ACATGGTCTTACACTAG-CTCCCGTGT-ATACGTGCT
63 ACAT-GTCTTACACTAGCCT-TCATCTCA-AC--GCT
* * * *
149066077 GATG-CATGTCCCAGACACGTCTTAAACTGGCTATCATCATCGGGGCCGATGCATGTCCCAAACA
1 GATGCCATGTCCCAGACATGTCTTAAACTAGCTATCATAATCGGGGCCAATGCATGTCCCAAACA
* *
149066141 TGTCTTACACTGGCAC-TCATCTCTACGCT
66 TGTCTTACACTAGC-CTTCATCTCAACGCT
* * * * *
149066170 GATGCCATGTCCCAGACATGATCTTACACTAGCTATCTTAAT-GTGGCTAATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATG-TCTTAAACTAGCTATCATAATCGGGGCCAATGCATGTCCCAAAC
* **
149066234 ATGTCTTACACTAGCCTTCGTCTCAATACT
65 ATGTCTTACACTAGCCTTCATCTCAACGCT
149066264 GATGCCATGTCCCAGACATGGTCTTA
1 GATGCCATGTCCCAGACAT-GTCTTA
149066290 TATCGGCTCT
Statistics
Matches: 180, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
93 8 0.04
94 79 0.44
95 34 0.19
96 13 0.07
97 29 0.16
98 13 0.07
99 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGTCTTAAACTAGCTATCATAATCGGGGCCAATGCATGTCCCAAACA
TGTCTTACACTAGCCTTCATCTCAACGCT
Found at i:149066273 original size:47 final size:45
Alignment explanation
Indices: 149066073--149066289 Score: 156
Period size: 47 Copynumber: 4.6 Consensus size: 45
149066063 CGTGTATACG
* * * **
149066073 TGCTGATGCATGTCCCAGACACGTCTTAAACT-GGCTATCATCATCGG
1 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCCT-TC-TC-TCAA
* * * * *
149066120 GGCCGATGCATGTCCCAAACATGTCTTACACTGGCAC-TCATCTCTA
1 TGCTGATGCATGTCCCAGACATGTCTTACACTAGC-CTTC-TCTCAA
*
149066166 CGCTGATGCCATGTCCCAGACATGATCTTACACTAG-CTATCT-T-AA
1 TGCTGATG-CATGTCCCAGACATG-TCTTACACTAGCCT-TCTCTCAA
*
149066211 TGTGGCTAATGCATGTCCCAGACATGTCTTACACTAGCCTTCGTCTCAA
1 --T-GCTGATGCATGTCCCAGACATGTCTTACACTAGCCTTC-TCTCAA
*
149066260 TACTGATGCCATGTCCCAGACATGGTCTTA
1 TGCTGATG-CATGTCCCAGACAT-GTCTTA
149066290 TATCGGCTCT
Statistics
Matches: 138, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
45 1 0.01
46 28 0.20
47 80 0.58
48 26 0.19
49 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
TGCTGATGCATGTCCCAGACATGTCTTACACTAGCCTTCTCTCAA
Found at i:149066274 original size:141 final size:144
Alignment explanation
Indices: 149066027--149066289 Score: 313
Period size: 141 Copynumber: 1.8 Consensus size: 144
149066017 CATCGAGGCC
* * * *
149066027 GATGTCATGTCCCAGACATGGTCTTACACTAGCTCCCGTGTATACGTGCTGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGATCTTACACTAGCTACCGTGTATACGTGCTAATGCATGTCCCAGA
* ** *
149066092 CACGTCTTAAACTGGCTATCATCATCGGGGCCGATGCATGTCCCAAACAT-GTCTTACACTGGCA
66 CACGTCTTAAACTGCCTATCATCATCAAGACCGATGCATGTCCCAAACATGGTCTTACACTGGCA
149066156 CTCATCTCTACGCT
131 CTCATCTCTACGCT
* *
149066170 GATGCCATGTCCCAGACATGATCTTACACTAGCTATC-T-TA-ATGTGGCTAATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGATCTTACACTAGCTACCGTGTATACGT-GCTAATGCATGTCCCAG
* * * * * *
149066232 ACATGTCTTACACTAGCCT-TCGTC-TCAATACTGATGCCATGTCCCAGACATGGTCTTA
65 ACACGTCTTAAACT-GCCTATCATCATCAAGACCGATG-CATGTCCCAAACATGGTCTTA
149066290 TATCGGCTCT
Statistics
Matches: 100, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
140 10 0.10
141 47 0.47
142 10 0.10
143 33 0.33
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGATCTTACACTAGCTACCGTGTATACGTGCTAATGCATGTCCCAGA
CACGTCTTAAACTGCCTATCATCATCAAGACCGATGCATGTCCCAAACATGGTCTTACACTGGCA
CTCATCTCTACGCT
Found at i:149070255 original size:19 final size:19
Alignment explanation
Indices: 149070231--149070269 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
149070221 AAAGATAGTC
149070231 CCCTGAACCTCCAAAGGTA
1 CCCTGAACCTCCAAAGGTA
149070250 CCCTGAACCTCCAAAGGTA
1 CCCTGAACCTCCAAAGGTA
149070269 C
1 C
149070270 ATCCTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (19 bp):
CCCTGAACCTCCAAAGGTA
Found at i:149071789 original size:2 final size:2
Alignment explanation
Indices: 149071782--149071811 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
149071772 GCTCTTGCAC
149071782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149071812 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:149074291 original size:27 final size:28
Alignment explanation
Indices: 149074234--149074303 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
149074224 AAACTTGTAC
*
149074234 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
149074262 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
149074289 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
149074304 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:149074314 original size:27 final size:27
Alignment explanation
Indices: 149074234--149074315 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
149074224 AAACTTGTAC
* * *
149074234 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
149074262 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
149074289 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
149074316 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:149082223 original size:27 final size:28
Alignment explanation
Indices: 149082166--149082234 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
149082156 AAACTTGTAC
*
149082166 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
149082194 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
149082221 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
149082235 GACTCACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 8 0.21
27 14 0.36
28 17 0.44
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:149090946 original size:40 final size:40
Alignment explanation
Indices: 149090902--149091002 Score: 175
Period size: 40 Copynumber: 2.5 Consensus size: 40
149090892 TTGGCTCGGA
* * *
149090902 TATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
149090942 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
149090982 TATAATAACCCGCACGAATGC
1 TATAATAACCCGCACGAATGC
149091003 TATGCACATA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.21
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
Found at i:149100861 original size:27 final size:28
Alignment explanation
Indices: 149100805--149100874 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
149100795 AAACTTGTAC
149100805 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
149100833 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
149100860 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
149100875 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:149100885 original size:27 final size:27
Alignment explanation
Indices: 149100805--149100886 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
149100795 AAACTTGTAC
* *
149100805 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
149100833 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
149100860 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
149100887 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:149108849 original size:27 final size:28
Alignment explanation
Indices: 149108793--149108862 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
149108783 AAACTTGTAC
149108793 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
149108821 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
149108848 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
149108863 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:149108873 original size:27 final size:27
Alignment explanation
Indices: 149108793--149108874 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
149108783 AAACTTGTAC
* *
149108793 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
149108821 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
149108848 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
149108875 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:149111075 original size:29 final size:27
Alignment explanation
Indices: 149111041--149111143 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
149111031 TACTCAATCA
*
149111041 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
149111070 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
149111099 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
149111128 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149111144 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:149118856 original size:29 final size:27
Alignment explanation
Indices: 149118822--149118924 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
149118812 TACTCAATCA
*
149118822 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
149118851 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
149118880 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
149118909 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149118925 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Done.