Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 483 of 770
Found at i:149126634 original size:29 final size:27
Alignment explanation
Indices: 149126600--149126702 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
149126590 TACTCAATCA
*
149126600 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
149126629 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
149126658 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
149126687 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149126703 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:149136880 original size:29 final size:29
Alignment explanation
Indices: 149136842--149136913 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
149136832 ATTTAAGCCA
* *
149136842 CACACATAGTGCCATATAGTCCAAACTCG
1 CACACTTAGTGCCATACAGTCCAAACTCG
* * *
149136871 CACACTTAGTGCCATACATTTCAAGCTCG
1 CACACTTAGTGCCATACAGTCCAAACTCG
*
149136900 CACACTCAGTGCCA
1 CACACTTAGTGCCA
149136914 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.31, C:0.33, G:0.14, T:0.22
Consensus pattern (29 bp):
CACACTTAGTGCCATACAGTCCAAACTCG
Found at i:149138264 original size:19 final size:21
Alignment explanation
Indices: 149138227--149138267 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
149138217 TCCACACACA
149138227 TTTTTTTTTCATCATTTTCTTT
1 TTTTTTTTTCA-CATTTTCTTT
149138249 TTTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTTCACATTTTCTTT
149138268 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 2 0.11
22 10 0.53
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTTTTTCACATTTTCTTT
Found at i:149139273 original size:39 final size:41
Alignment explanation
Indices: 149139192--149139354 Score: 130
Period size: 39 Copynumber: 4.2 Consensus size: 41
149139182 AAATTGAATG
* * ** *
149139192 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGC-GAGTGACT
* * *
149139231 ATATCCGGGTTAAGACCCGAAGGCAATT-G-GCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGACT
* *
149139270 ATATCCGGGCTAAGA-CCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGACT
* * *
149139309 CTATCCGGGCTAAGACCCGAAGGC-ATTTGTGC-A-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGACT
149139347 ATATCCGG
1 ATATCCGG
149139355 TTATATTCCG
Statistics
Matches: 102, Mismatches: 17, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
37 3 0.03
38 20 0.20
39 52 0.51
40 27 0.26
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGACT
Found at i:149147255 original size:40 final size:40
Alignment explanation
Indices: 149147189--149147339 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
149147179 AAATTGAATG
* * *
149147189 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
149147228 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
149147268 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
149147308 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
149147340 ATGATTATAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:149151572 original size:47 final size:47
Alignment explanation
Indices: 149151519--149151640 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
149151509 GCATTGGCAC
*
149151519 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
149151566 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
149151613 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
149151641 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:149151744 original size:55 final size:54
Alignment explanation
Indices: 149151619--149151813 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
149151609 TTGGTAAGAT
* *
149151619 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGC
* * *
149151673 AAGGAAATCATGTAAGACTATGTCC-AGGCATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATG-CCAAGGCATGGAATTGATGAGTT-CTATAAGGC
* * *
149151728 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGC
* *
149151781 AAGGATACCATGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG
149151814 CAATGGTAAG
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 42 0.34
55 42 0.34
56 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGAATTGATGAGTTCTATAAGGC
Found at i:149156179 original size:54 final size:55
Alignment explanation
Indices: 149156088--149156225 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 55
149156078 CGATTTACAA
*
149156088 AATTATTGAAATA-CCTTGTAGGGTAG-AATTGCTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAATTGCTGAAATACCCCTGTAGGGTAG
149156141 AATTACTGAAATACCCTTGTAGGGTAGAAATAT-C-GAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAAAT-TGCTGAAATACCCCTGTAGGGTAG
* *
149156195 AATTAC-CAAGATACCCTTGTGGGGTA-AAATT
1 AATTACTGAA-ATACCCTTGTAGGGTAGAAATT
149156226 ACCATTTTGC
Statistics
Matches: 78, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
52 1 0.01
53 18 0.23
54 54 0.69
55 4 0.05
56 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (55 bp):
AATTACTGAAATACCCTTGTAGGGTAGAAATTGCTGAAATACCCCTGTAGGGTAG
Found at i:149156208 original size:27 final size:26
Alignment explanation
Indices: 149156095--149156227 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 26
149156085 CAAAATTATT
* *
149156095 GAAATA-CCTTGTAGGGTAGAATTGC
1 GAAATACCCCTGTAGGGTAGAATTAC
149156120 TGAAATACCCCTGTAGGGTAGAATTAC
1 -GAAATACCCCTGTAGGGTAGAATTAC
* *
149156147 TGAAATACCCTTGTAGGGTAGAAATATC
1 -GAAATACCCCTGTAGGGTAGAATTA-C
149156175 GAAATACCCCTGTAGGGTAGAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
* * * *
149156201 CAAGATACCCTTGTGGGGTAAAATTAC
1 GAA-ATACCCCTGTAGGGTAGAATTAC
149156228 CATTTTGCCC
Statistics
Matches: 94, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.10
27 84 0.89
28 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (26 bp):
GAAATACCCCTGTAGGGTAGAATTAC
Found at i:149156617 original size:14 final size:14
Alignment explanation
Indices: 149156576--149156617 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
149156566 CATGTTACCG
*
149156576 AAGGCTGTGTGCCA
1 AAGGCTATGTGCCA
* *
149156590 AACG-TATTTGCCA
1 AAGGCTATGTGCCA
149156603 AAGGCTATGTGCCA
1 AAGGCTATGTGCCA
149156617 A
1 A
149156618 TATATGATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (14 bp):
AAGGCTATGTGCCA
Found at i:149156960 original size:216 final size:217
Alignment explanation
Indices: 149156578--149156974 Score: 480
Period size: 216 Copynumber: 1.8 Consensus size: 217
149156568 TGTTACCGAA
* *
149156578 GGCTGTGTGCCAAACGTATTTGCCAAAGGCTATGTGCCAATATATGATTATTGATTACTCTGTGT
1 GGCTGTGTGCCAAACATATTTGCCAAAGGCTATGTGCCAATATATGATTATTGACTACTCTGTGT
* * *
149156643 CGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTCGCTAATGGCTATGTGCCTAACA
66 CAATCACATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTAATGGCTATGTGCCTAACA
** *
149156708 TGATACAACTACCAATGGCTTAAAGCCAATTATTCTGATT-A-TGGCTTTGCGCCAACTTACAAA
131 CAATACAACTACCAATGGCTTAAAGCCAAGTATTCTG-TTAAGTGGCTTTGCGCCAACTTACAAA
149156771 TGGCTCTATGCCAACCTGATTAT
195 TGGCTCTATGCCAACCTGATTAT
* * *
149156794 GGCTGTGTGCCAAACATATTTGCCAAAGGCTATGTGTCAATATATGGTTATTGACTGCTCTGTGT
1 GGCTGTGTGCCAAACATATTTGCCAAAGGCTATGTGCCAATATATGATTATTGACTACTCTGTGT
* * * * * *
149156859 CAATCACATTTAC-CTAGGGCTGTGTGCC-AGTTATGTTAATC-TAGTTGATGGCTATGTGCCTA
66 CAATCACATTTACTC-AAGGCTGTGTGCCGA-CTATATT-ACCGTAGCTAATGGCTATGTGCCTA
* ** * ** *** *
149156921 ACACAATGCAGTTATCGGTGGCTTTGTGCCACGTATTCTGTTAAGTGGCTTTGC
128 ACACAATACAACTACCAATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGC
149156975 CACATTATCT
Statistics
Matches: 149, Mismatches: 27, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
215 4 0.03
216 134 0.90
217 11 0.07
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (217 bp):
GGCTGTGTGCCAAACATATTTGCCAAAGGCTATGTGCCAATATATGATTATTGACTACTCTGTGT
CAATCACATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTAATGGCTATGTGCCTAACA
CAATACAACTACCAATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGCGCCAACTTACAAAT
GGCTCTATGCCAACCTGATTAT
Found at i:149156995 original size:27 final size:26
Alignment explanation
Indices: 149156965--149157072 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 26
149156955 ATTCTGTTAA
* * *
149156965 GTGGCTTTGCCACATTATCTGTTTTAG
1 GTGGCTATGCCACAATATCTGTTCT-G
*
149156992 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
*
149157019 GTGGCTCTGCCACAATATCTGTAAT-TG
1 GTGGCTATGCCACAATATCTGT--TCTG
* * *
149157046 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
149157072 G
1 G
149157073 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
25 1 0.01
26 11 0.16
27 47 0.68
28 10 0.14
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:149157060 original size:54 final size:53
Alignment explanation
Indices: 149156965--149157072 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
149156955 ATTCTGTTAA
* * * *
149156965 GTGGCTTTGCCACATTATCTGTTTTAGGTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCACAATATCTGTATTAGGTGACTATGCCAC-AATATCTATTCTG
* * *
149157019 GTGGCTCTGCCACAATATCTGTAATT-GGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGT-ATTAGGTGACTATGCCACAATATCTATTCTG
149157072 G
1 G
149157073 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 13 0.28
54 31 0.67
55 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATTAGGTGACTATGCCACAATATCTATTCTG
Found at i:149157259 original size:37 final size:37
Alignment explanation
Indices: 149157218--149157293 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 37
149157208 TTACCTGGTA
*
149157218 CTGATTCTAATTCTATCACCTAATTCTT-ATTCTGATT
1 CTGATTCTAATTCTATCACCTAATT-TTGATTCTAATT
* * * *
149157255 CTGATTCTGATTTTGTCACCTGATTTTGATTCTAATT
1 CTGATTCTAATTCTATCACCTAATTTTGATTCTAATT
149157292 CT
1 CT
149157294 CATTTTGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 2 0.06
37 31 0.94
ACGTcount: A:0.21, C:0.20, G:0.09, T:0.50
Consensus pattern (37 bp):
CTGATTCTAATTCTATCACCTAATTTTGATTCTAATT
Found at i:149157300 original size:18 final size:18
Alignment explanation
Indices: 149157277--149157311 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
149157267 TTGTCACCTG
149157277 ATTTTGATTCTAATTCTC
1 ATTTTGATTCTAATTCTC
*
149157295 ATTTTGATTCTAGTTCT
1 ATTTTGATTCTAATTCT
149157312 AATAATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.57
Consensus pattern (18 bp):
ATTTTGATTCTAATTCTC
Found at i:149158571 original size:15 final size:15
Alignment explanation
Indices: 149158551--149158580 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
149158541 CAACACTTGT
149158551 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
149158566 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
149158581 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:149166529 original size:15 final size:15
Alignment explanation
Indices: 149166509--149166538 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
149166499 CAACACTTGT
149166509 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
149166524 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
149166539 ATACATTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:149169504 original size:42 final size:42
Alignment explanation
Indices: 149169443--149169593 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
149169433 TGAAATTATA
** *
149169443 TGTAAGACCATATAAGGGATATGGCATCAATATGAGACTATG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTATG
149169485 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACT-TCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAT-G
* * * * **
149169527 TGTAAGACCATAGT-TGGGCTATTAGCATCGATACGAGATTACA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGACTATG
*
149169570 TGTAAGACCATATCTGGGACATGG
1 TGTAAGACCATATCTGGGATATGG
149169594 TATTGGTACA
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 58 0.63
43 33 0.36
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTATG
Found at i:149175242 original size:40 final size:40
Alignment explanation
Indices: 149175197--149175364 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
149175187 CGGAATATAA
149175197 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
149175237 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
149175277 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
149175317 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
149175357 CCGGATAT
1 CCGGATAT
149175365 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149183252 original size:40 final size:40
Alignment explanation
Indices: 149183207--149183374 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
149183197 CGGAATATAA
149183207 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
149183247 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
149183287 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
149183327 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
149183367 CCGGATAT
1 CCGGATAT
149183375 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149183357 original size:80 final size:80
Alignment explanation
Indices: 149183223--149183372 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
149183213 ATAATCACGT
*
149183223 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
149183287 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
149183303 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
149183366 CCCGGAT
64 CCCGGAT
149183373 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:149186960 original size:28 final size:28
Alignment explanation
Indices: 149186891--149186991 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
149186881 GACAAGATTG
* * * *
149186891 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
149186921 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
149186949 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
149186978 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
149186992 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:149186985 original size:29 final size:28
Alignment explanation
Indices: 149186920--149186991 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
149186910 AAAATTGTAC
*
149186920 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
149186948 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
149186977 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
149186992 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:149192151 original size:39 final size:39
Alignment explanation
Indices: 149192104--149192285 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 39
149192094 AATGTTCGAG
149192104 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
149192143 TGATATCCGGGCTAAGCCCGAAGACAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
149192182 TGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
149192220 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
149192260 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
149192286 GTTTGAACGA
Statistics
Matches: 122, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 29 0.24
39 59 0.48
40 34 0.28
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:149195749 original size:31 final size:31
Alignment explanation
Indices: 149195714--149195776 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
149195704 AGCTATCTGG
149195714 GAACTGGATGGAAACATAAGAAAGTAATGTT
1 GAACTGGATGGAAACATAAGAAAGTAATGTT
*
149195745 GAACTGGATGGAAACATAGGAAAGTAATGTT
1 GAACTGGATGGAAACATAAGAAAGTAATGTT
149195776 G
1 G
149195777 GAATCTCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.06, G:0.29, T:0.22
Consensus pattern (31 bp):
GAACTGGATGGAAACATAAGAAAGTAATGTT
Found at i:149197986 original size:40 final size:40
Alignment explanation
Indices: 149197901--149198051 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
149197891 AATTGAATGA
* * * **
149197901 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
149197941 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
149197982 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
149198021 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
149198052 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:149198065 original size:40 final size:40
Alignment explanation
Indices: 149197938--149198067 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
149197928 ATGCTGGAAA
* * *
149197938 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
149197978 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
149198018 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
149198058 TTATATCCGG
1 TTATATCCGG
149198068 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:149202037 original size:93 final size:93
Alignment explanation
Indices: 149201925--149202096 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
149201915 GCCCATAAGT
* *
149201925 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
149201990 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
149202018 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
149202083 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
149202097 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:149202092 original size:46 final size:46
Alignment explanation
Indices: 149201917--149202092 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
149201907 TGTAACCCGC
* *
149201917 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
149201963 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
149202009 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
149202056 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
149202093 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:149204512 original size:15 final size:15
Alignment explanation
Indices: 149204468--149204505 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
149204458 CAAAGATAAC
*
149204468 AAGAAAACC-GAATA
1 AAGAAATCCGGAATA
149204482 AAGAAATCCGGAATA
1 AAGAAATCCGGAATA
*
149204497 AAGAGATCC
1 AAGAAATCC
149204506 AGGATAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.55, C:0.16, G:0.18, T:0.11
Consensus pattern (15 bp):
AAGAAATCCGGAATA
Found at i:149210572 original size:27 final size:27
Alignment explanation
Indices: 149210522--149210665 Score: 157
Period size: 27 Copynumber: 5.4 Consensus size: 27
149210512 GTGCTTGGAC
*
149210522 CCCTTAT-TGATAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * *
149210548 CCCTTATGTGGTAAAACGACAATTTTT
1 CCCTTATGTGGTAAAATGACTATTTTG
*
149210575 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* *
149210602 CCCTTATATGGTAAAATGACTGA-TTCG
1 CCCTTATGTGGTAAAATGACT-ATTTTG
* ** *
149210629 CCCTTATATGGTAAGTTGACTATTTTT
1 CCCTTATGTGGTAAAATGACTATTTTG
*
149210656 CCCCTATGTG
1 CCCTTATGTG
149210666 ATATATGTTT
Statistics
Matches: 98, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.08
27 90 0.92
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.40
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:149226705 original size:40 final size:40
Alignment explanation
Indices: 149226571--149226722 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
149226561 GTAACCACAT
* * * **
149226571 GCACGAATGCCCTCGGGTCTTAGCCCGGATAGAA-CGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACCA
* * * *
149226611 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * **
149226651 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
149226691 GCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
149226723 CATTCAATTG
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 92 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:149227980 original size:17 final size:18
Alignment explanation
Indices: 149227960--149227996 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
149227950 ACTTTTCTTC
*
149227960 CTTTCTTT-TTTTTTTTT
1 CTTTCTTTGTTTTTGTTT
149227977 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
149227995 CT
1 CT
149227997 CTCATGTACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:149234746 original size:40 final size:40
Alignment explanation
Indices: 149234596--149234763 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
149234586 CGGAATACAA
* * *
149234596 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
149234636 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
149234676 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
149234716 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
149234756 CCGGATAT
1 CCGGATAT
149234764 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149236020 original size:17 final size:18
Alignment explanation
Indices: 149235992--149236032 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
149235982 GGATGAACAC
*
149235992 TTTTCTTCCTTTTTTTTT
1 TTTTCTTCCTTTGTTTTT
149236010 TTTTCTT-CTTTGTTTTT
1 TTTTCTTCCTTTGTTTTT
*
149236027 GTTTCT
1 TTTTCT
149236033 CTCNNNNNNN
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (18 bp):
TTTTCTTCCTTTGTTTTT
Found at i:149240971 original size:24 final size:24
Alignment explanation
Indices: 149240655--149240963 Score: 555
Period size: 24 Copynumber: 12.9 Consensus size: 24
149240645 GCAAAGACCA
149240655 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
149240679 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
149240703 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
149240727 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
149240751 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
149240775 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
149240799 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
149240823 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
149240847 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
149240871 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
149240895 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
**
149240919 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
149240943 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
149240964 TGCTATAGTC
Statistics
Matches: 276, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 276 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:149243543 original size:41 final size:41
Alignment explanation
Indices: 149243492--149243606 Score: 119
Period size: 41 Copynumber: 2.8 Consensus size: 41
149243482 AGCCTGTATC
* * *
149243492 ATACATCGGCACAAGGCCTGCTAGACTCAAAG-TCTGATTTT
1 ATACACCGGCACAAGGCCTGCTAGGCTCAAAGCTC-GATTTA
*
149243533 ATACACCGGCA-ATAAGCCTGCTAGGCAT-AAAGCTCGATTTA
1 ATACACCGGCACA-AGGCCTGCTAGGC-TCAAAGCTCGATTTA
* * *
149243574 ATTCACCAGCACAAGGCTTGCTAGGCTCAAAGC
1 ATACACCGGCACAAGGCCTGCTAGGCTCAAAGC
149243607 CCGAATATCA
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
40 2 0.03
41 55 0.90
42 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (41 bp):
ATACACCGGCACAAGGCCTGCTAGGCTCAAAGCTCGATTTA
Found at i:149247647 original size:119 final size:120
Alignment explanation
Indices: 149247376--149247659 Score: 348
Period size: 119 Copynumber: 2.4 Consensus size: 120
149247366 TCGAATGATG
* *
149247376 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTATATCCGGACTAAGACCCGAAGGCATT
*
149247440 TGTGCGAGTTACTAAATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
149247496 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGACTAAGACCCGAAGGCAT
* **
149247558 TTGTGCGAGTTACTAATTCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* **
149247616 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATATCCGG
149247660 TTGAATTCCG
Statistics
Matches: 141, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
118 3 0.02
119 93 0.66
120 37 0.26
121 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGACTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:149247654 original size:40 final size:40
Alignment explanation
Indices: 149247376--149247659 Score: 323
Period size: 40 Copynumber: 7.1 Consensus size: 40
149247366 TCGAATGATG
* *
149247376 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
149247416 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
149247456 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
149247496 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
149247535 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
149247574 TTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
149247615 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
149247655 TCCGG
1 TCCGG
149247660 TTGAATTCCG
Statistics
Matches: 223, Mismatches: 14, Indels: 14
0.89 0.06 0.06
Matches are distributed among these distances:
39 40 0.18
40 174 0.78
41 9 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:149254895 original size:40 final size:38
Alignment explanation
Indices: 149254626--149254888 Score: 330
Period size: 39 Copynumber: 6.7 Consensus size: 38
149254616 TCGAATGATG
* *
149254626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTA-A
*
149254666 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
* *
149254705 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT-AA
*
149254745 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
*
149254784 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
*
149254823 TTCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-A
* *
149254863 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
149254889 AACGAGTAGC
Statistics
Matches: 205, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
39 110 0.54
40 87 0.42
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:149254895 original size:79 final size:79
Alignment explanation
Indices: 149254626--149254888 Score: 372
Period size: 79 Copynumber: 3.3 Consensus size: 79
149254616 TCGAATGATG
* * *
149254626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
149254690 TGTGCGAGTTACTAA
65 TGTGCGAGTTACTAA
* *
149254705 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
149254769 TGTGCGAGTTACTAA
65 TGTGCGAGTTACTAA
* **
149254784 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGTTAAG-TCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
149254847 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTA-A
* *
149254863 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
149254889 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
78 35 0.21
79 113 0.68
80 18 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAA
Found at i:149254921 original size:118 final size:118
Alignment explanation
Indices: 149254666--149254895 Score: 322
Period size: 118 Copynumber: 1.9 Consensus size: 118
149254656 AGTGACTATA
*
149254666 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATCCGGACTAAGATCCAAAGGCATTTG
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATCCGGACTAAGATCCAAAGGCATTTG
**
149254731 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
65 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAT
* ** *
149254785 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGTTAAG-TCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA-TCCGGACTAAGATCCAAAGGCATTTG
* *
149254849 TGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
65 TGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
149254896 AGCTATATCT
Statistics
Matches: 99, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
117 1 0.01
118 77 0.78
119 21 0.21
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATCCGGACTAAGATCCAAAGGCATTTGT
GCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAT
Found at i:149268127 original size:21 final size:21
Alignment explanation
Indices: 149268101--149268141 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
149268091 TATCCCCATA
* *
149268101 GGTGTGTTGGTTGGTATAGGT
1 GGTGTGCTGGCTGGTATAGGT
149268122 GGTGTGCTGGCTGGTATAGG
1 GGTGTGCTGGCTGGTATAGG
149268142 ATGGGTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.49, T:0.37
Consensus pattern (21 bp):
GGTGTGCTGGCTGGTATAGGT
Found at i:149277304 original size:29 final size:29
Alignment explanation
Indices: 149277271--149277352 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
149277261 TGACGAGATA
*
149277271 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
149277300 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
149277329 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
149277353 AAAAAAAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:149285200 original size:29 final size:29
Alignment explanation
Indices: 149285167--149285248 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
149285157 TGACGAGATA
*
149285167 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
149285196 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
149285225 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
149285249 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:149290320 original size:40 final size:39
Alignment explanation
Indices: 149290275--149290440 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
149290265 CGGAATATAA
149290275 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
149290315 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
149290354 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
149290394 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
149290433 CCGGATAT
1 CCGGATAT
149290441 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:149290397 original size:79 final size:79
Alignment explanation
Indices: 149290291--149290440 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
149290281 ATAATCACGT
*
149290291 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
149290354 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
149290370 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
149290435 GGATAT
66 GGATAT
149290441 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:149298307 original size:40 final size:40
Alignment explanation
Indices: 149298262--149298428 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
149298252 CGGAATATAA
149298262 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
149298302 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
149298342 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
149298382 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
149298421 CCGGATAT
1 CCGGATAT
149298429 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149298412 original size:80 final size:79
Alignment explanation
Indices: 149298278--149298428 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
149298268 ATAATCACGT
*
149298278 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
149298343 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
149298358 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
149298421 CCGGATAT
64 CCGGATAT
149298429 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:149304085 original size:27 final size:27
Alignment explanation
Indices: 149304055--149304137 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
149304045 CTAATGGTCG
149304055 ATGTGATGAATGTGAAAATGTATGTAT
1 ATGTGATGAATGTGAAAATGTATGTAT
** ***
149304082 ATGTGAT-AA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATGTAT
149304104 ATGTGATGAATGTGAAAATGTATGTAT
1 ATGTGATGAATGTGAAAATGTATGTAT
149304131 ATGTGAT
1 ATGTGAT
149304138 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 2 0.05
24 6 0.15
25 6 0.15
26 2 0.05
27 15 0.38
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATGTAT
Found at i:149304094 original size:49 final size:49
Alignment explanation
Indices: 149304019--149304521 Score: 751
Period size: 49 Copynumber: 10.3 Consensus size: 49
149304009 CAAGATTCGT
* * * * *
149304019 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* *
149304068 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
149304117 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * * *
149304166 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* *
149304215 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* *
149304264 GAAAGTATATGTATATGTGATAAGGCCTAATGG-CGATGTGGTGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* *
149304312 -AAAGTATATGTATATGTGAT-AGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
149304359 GAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
149304408 GAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
149304457 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
149304506 GAAAGTGTATATATAT
1 GAAAGTGTATGTATAT
149304522 ATGTGGTAAA
Statistics
Matches: 433, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 11 0.03
47 35 0.08
48 35 0.08
49 352 0.81
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
Found at i:149304372 original size:242 final size:245
Alignment explanation
Indices: 149304026--149304541 Score: 786
Period size: 242 Copynumber: 2.1 Consensus size: 245
149304016 CGTGAAAATG
* * *
149304026 TATATATATGTGATGAGGCCTAATGGTCGATGTGATGAATGTGAAAATGTATGTATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTCAAAATATATGTATATGTGATAA
* *
149304091 GGCCTAATGGCCGATGTGATGAATGTGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATG
65 GGCCTAATGGCCGATGTGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATG
*
149304156 TGATGAATGCGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAAT
130 TGATGAATGCGAAAATATATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAAT
*
149304221 GTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAA-GTA
195 GTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGGTA
* * *
149304271 TATGTATATGTGATAAGGCCTAATGGCGATGTGGTGAATG-CAAAGTATATGTATATGTGAT-AG
1 TATATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTCAAAATATATGTATATGTGATAAG
* * *
149304334 GCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGT
* * * * * *
149304399 GGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTG
131 GATGAATGCGAAAATATATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATG
*
149304464 TATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
196 TATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAG-GTA
* * *
149304515 TATATATATGTGGTAAAGCCGAATGGC
1 TATATATATGTGATAAGGCCTAATGGC
149304542 TAATGTGAAT
Statistics
Matches: 245, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
242 164 0.67
243 18 0.07
244 39 0.16
245 24 0.10
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (245 bp):
TATATATATGTGATAAGGCCTAATGGCGATGTGATGAATGTCAAAATATATGTATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGCGAAAATATATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATG
TATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGGTA
Found at i:149304645 original size:37 final size:36
Alignment explanation
Indices: 149304590--149304676 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
149304580 AACTTGGAAA
149304590 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
149304628 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
149304665 TATGTCCGGGTA
1 TATGTCCGGGTA
149304677 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:149306582 original size:40 final size:40
Alignment explanation
Indices: 149306536--149306835 Score: 270
Period size: 40 Copynumber: 7.5 Consensus size: 40
149306526 TGAATGATAC
* *
149306536 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTG-ATGTAT
* * * * *
149306576 CCGGGCTAAGACCCGAAG-GTATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCT-AG-TGATGTAT
* * * * * *
149306616 CCGGGTTAAGACCCGAAG-GCAATTGTGCTTGTGGTTTTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT-GATGTAT
* **
149306656 CC-GGCTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * *
149306695 CCGGACTAAGTTCCGAAGAGCA-TTCTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * * *
149306734 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * * *
149306774 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
*
149306814 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
149306836 ATCATGCTGG
Statistics
Matches: 221, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
39 56 0.25
40 162 0.73
41 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
Found at i:149306711 original size:79 final size:79
Alignment explanation
Indices: 149306653--149306835 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 79
149306643 CTTGTGGTTT
149306653 TATCCGG-CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
149306717 TTCTGCTAGTGATG
66 TTCTGCTAGTGATG
* *
149306731 TATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
149306796 TTCGTGCTAGTGATG
66 TTC-TGCTAGTGATG
* * * *
149306811 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
149306836 ATCATGCTGG
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 7 0.07
79 58 0.60
80 31 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
TTCTGCTAGTGATG
Found at i:149309814 original size:49 final size:49
Alignment explanation
Indices: 149309739--149310293 Score: 815
Period size: 49 Copynumber: 11.3 Consensus size: 49
149309729 CAAGATTCGT
* * *
149309739 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* *
149309788 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* *
149309837 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
*
149309886 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* *
149309935 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* * *
149309984 GAAAATGTATGTATATGTGCTAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* * * * *
149310033 GAAAGTATATGTATATGTGATAAGGCCTAATGGTCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* *
149310082 -AAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAA-TGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* * *
149310131 GAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* * *
149310180 GAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* * *
149310229 GAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
* *
149310278 GAAAGTGTATATATAT
1 GAAAATGTATGTATAT
149310294 ATGTGGTAAA
Statistics
Matches: 473, Mismatches: 31, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
48 3 0.01
49 467 0.99
50 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (49 bp):
GAAAATGTATGTATATGTGATGAGGCCTAATGGCCGATGTGATGAATGC
Found at i:149310417 original size:37 final size:36
Alignment explanation
Indices: 149310362--149310448 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
149310352 AACTTGGCAA
149310362 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
149310400 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
149310437 TATGTCCGGGTA
1 TATGTCCGGGTA
149310449 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:149312124 original size:40 final size:40
Alignment explanation
Indices: 149312023--149312167 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
149312013 TACTCGAATG
*
149312023 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
149312064 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
149312104 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
149312144 ATATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
149312168 CTTGGGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:149315049 original size:49 final size:49
Alignment explanation
Indices: 149314998--149315260 Score: 373
Period size: 49 Copynumber: 5.1 Consensus size: 49
149314988 ACATAATAAT
* *
149314998 ATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
149315047 ATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
149315096 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
149315145 ATATGTGATAAGGCCTAATGGCCGACGTGATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGG-C--C--GAT-------GTGATGAATGTGAAAATGTATAC
*
149315206 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
149315255 ATATGT
1 ATATGT
149315261 TGTGACATCC
Statistics
Matches: 195, Mismatches: 7, Indels: 24
0.86 0.03 0.11
Matches are distributed among these distances:
49 143 0.73
50 1 0.01
52 1 0.01
54 2 0.01
56 2 0.01
58 1 0.01
60 1 0.01
61 44 0.23
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
Found at i:149315179 original size:12 final size:12
Alignment explanation
Indices: 149315162--149315188 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
149315152 ATAAGGCCTA
149315162 ATGGCCGACGTG
1 ATGGCCGACGTG
149315174 ATGGCCGACGTG
1 ATGGCCGACGTG
149315186 ATG
1 ATG
149315189 AATGTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.22, G:0.41, T:0.19
Consensus pattern (12 bp):
ATGGCCGACGTG
Found at i:149315183 original size:61 final size:61
Alignment explanation
Indices: 149315113--149315237 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
149315103 ATAAGGCCTA
149315113 ATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTG
1 ATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTG
149315174 ATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTG
1 ATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTG
149315235 ATG
1 ATG
149315238 AATGTGAAAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (61 bp):
ATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTG
Found at i:149317138 original size:40 final size:39
Alignment explanation
Indices: 149317011--149317140 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
149317001 ATGCTGGAAA
* *
149317011 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
149317051 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
149317091 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
149317131 TTATATCCGG
1 TTATATCCGG
149317141 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:149318584 original size:49 final size:49
Alignment explanation
Indices: 149318512--149319106 Score: 1010
Period size: 49 Copynumber: 12.1 Consensus size: 49
149318502 TTCGGGGTGT
*
149318512 TACATATGTGATAAGGCCTAATGGTCGACGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* * *
149318561 TACATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
149318610 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
*
149318659 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
*
149318708 TACATATGTGATAAGTCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
149318757 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* *
149318806 TACATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* *
149318855 TAGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* *
149318904 TACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* * *
149318953 TACATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* *
149319002 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
* *
149319051 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
*
149319100 TATATAT
1 TACATAT
149319107 ATGTGGTAAA
Statistics
Matches: 521, Mismatches: 25, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 521 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTA
Found at i:149319230 original size:37 final size:36
Alignment explanation
Indices: 149319175--149319261 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
149319165 AACTTGGAAA
149319175 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
149319213 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
149319250 TATGTCCGGGTA
1 TATGTCCGGGTA
149319262 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:149328912 original size:29 final size:29
Alignment explanation
Indices: 149328850--149328952 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
149328840 GTGACGAGAT
* * *
149328850 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
149328879 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
149328908 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
149328937 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
149328953 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:149336910 original size:29 final size:29
Alignment explanation
Indices: 149336848--149336950 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
149336838 GTGACGAGAT
* * *
149336848 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
149336877 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
149336906 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
149336935 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
149336951 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:149344959 original size:24 final size:24
Alignment explanation
Indices: 149344927--149344989 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
149344917 AATCTCAAAT
149344927 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
149344951 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
149344975 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
149344990 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:149352800 original size:24 final size:24
Alignment explanation
Indices: 149352768--149352830 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
149352758 AATCTCAAAT
149352768 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
149352792 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
149352816 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
149352831 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:149354356 original size:47 final size:47
Alignment explanation
Indices: 149354303--149355337 Score: 1557
Period size: 47 Copynumber: 22.0 Consensus size: 47
149354293 GGGGTGTTAC
149354303 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* ** * *
149354350 ATATACACTTTCACATTCATCACGTTGGCCGCTCAGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149354397 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
149354444 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* ** *
149354491 ATATACACTTTCACATTCATCACGTTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149354538 ATGTATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* ** * *
149354585 ATATACACTTTCACATTCATCACGTTGGCCGCTCGACCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* * *
149354632 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATTACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
** *
149354679 ATATACACTTTCACATTCATCACATTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149354726 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
*
149354773 ATATACACTTTCACATTCATCACATTCGCCATTCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* * ** *
149354820 ATATACACTTTCGCATTCATCACGTTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149354867 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
** *
149354914 ATATACACTTTCACATTCATCACATTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149354961 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *** *
149355008 ATATACACTTTCACATTCATCACGTTGGCTGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149355055 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
** *
149355102 ATATACACTTTCACATTCATCACATTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149355149 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
*
149355196 ATATACAGTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
** *
149355243 ATATACACTTTCACATTCATCACATTGGCCGCTCGGCCCTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
* *
149355290 ATATATACTTTCACATTCATCACATTGGCCATCCGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
149355337 A
1 A
149355338 AACATATCTT
Statistics
Matches: 876, Mismatches: 112, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 876 1.00
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
Found at i:149354841 original size:25 final size:25
Alignment explanation
Indices: 149354766--149354842 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
149354756 ATCCGGCCTT
*
149354766 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCGCATTC
** * *
149354791 ATCACAT-T-CGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-GCATTC
149354813 ATCACATATATACACTTTCGCATTC
1 ATCACATATATACACTTTCGCATTC
149354838 ATCAC
1 ATCAC
149354843 GTTGGCCGCT
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
22 11 0.29
23 5 0.13
24 6 0.16
25 16 0.42
ACGTcount: A:0.30, C:0.31, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCGCATTC
Found at i:149370810 original size:22 final size:22
Alignment explanation
Indices: 149370785--149370841 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
149370775 AAACAGGGTC
149370785 ACACGCCCGTGTGGACATAGGG
1 ACACGCCCGTGTGGACATAGGG
* *
149370807 ACACGCCTGTGTGGACATAGTG
1 ACACGCCCGTGTGGACATAGGG
* *
149370829 ACATGCTCGTGTG
1 ACACGCCCGTGTG
149370842 CCTTCAACAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (22 bp):
ACACGCCCGTGTGGACATAGGG
Found at i:149372583 original size:50 final size:50
Alignment explanation
Indices: 149372484--149372874 Score: 290
Period size: 50 Copynumber: 7.8 Consensus size: 50
149372474 AAGCTCTCTA
* * * * *
149372484 GTACGCATAGTAGCCTGCACTTAGTACTAAACATGCGACCT-ACCAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACC-ATCTG
* *
149372534 GTACACATAGTAACTTGCACTTAGTACTACACACGTGACTTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTG
* * * ** * *
149372584 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAACGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTG
* * * ** * * *
149372635 GTACGCATAGTAG-CTGGACTTAGTACTACACATGCAACCTATCAATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTG
* * * *
149372684 GTACACGTAGGAGCCTGCACTTAGTACTACATACATGACTTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTG
* * * * * ** *
149372734 ATACAC-TGAGTAGCCTACACTTAGTACTACATAGGTGA-TCGAAGTTAAC-G
1 GTACACAT-AGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTG
* * * * * * *
149372784 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTTG
1 -GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTG
* *
149372835 GTACACGTAGTAGCCTGCAATTAGTACTACACACGTGACT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACT
149372875 CACAATGAAT
Statistics
Matches: 259, Mismatches: 70, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
49 16 0.06
50 192 0.74
51 50 0.19
52 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTG
Found at i:149372675 original size:150 final size:151
Alignment explanation
Indices: 149372483--149372874 Score: 617
Period size: 150 Copynumber: 2.6 Consensus size: 151
149372473 GAAGCTCTCT
* * * *
149372483 AGTACGCATAGTAGCCTGCACTTAGTACTAAACATGCGACCTACCAATCTGGTACACATAGTAAC
1 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
149372548 TTGCACTTAGTACTACACACGTGACTTAACCATCTGATACAC-GTAGTAGCCTGCACTTAGTACT
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACTG-AGTAGCCTACACTTAGTACT
149372612 ACACACGTGATCGAAGTTAACG
130 ACACACGTGATCGAAGTTAACG
* * * *
149372634 GGTACGCATAGTAG-CTGGACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGGAGC
1 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
149372698 CTGCACTTAGTACTACATACATGACTTAACCATCTGATACACTGAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACTGAGTAGCCTACACTTAGTACTA
* *
149372763 CATAGGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
*
149372784 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTTGGTACACGTAGTAGC
1 AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
149372849 CTGCAATTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
149372875 CACAATGAAT
Statistics
Matches: 217, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
150 134 0.62
151 83 0.38
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
AGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACTGAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:149374793 original size:39 final size:40
Alignment explanation
Indices: 149374749--149374885 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 40
149374739 ACTAGGATCT
* *
149374749 GAAGGCATTCGTGCGAGTTAATAAATCTGGGCTAAG-CCC
1 GAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTCCC
* * * *
149374788 GAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTCCC
* **
149374828 GAAGGCATTCGTGCGAGTCACTATAAA--CGGGCTTCGTCCC
1 GAAGGCATTCGTGCGAGTTA--ATAAACCCGGGCTAAGTCCC
* *
149374868 GAAGGCATTTGAGCGAGT
1 GAAGGCATTCGTGCGAGT
149374886 CGTTATATCC
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
39 30 0.38
40 46 0.57
42 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
GAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTCCC
Found at i:149374860 original size:79 final size:79
Alignment explanation
Indices: 149374696--149374878 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 79
149374686 CGAATGATGT
* * * * *
149374696 TCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCTGAAGGCATTCG
1 TCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
*
149374760 TGCGAGTTAATAAA
66 TGCGAGTCAATAAA
* **
149374774 TCTGGGCTAAGCCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TC-GGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
149374837 CGTGCGAGTCACTATAAA
64 CGTGCGAGTCA--ATAAA
**
149374855 -CGGGCTTCGTCCCGAAGGCATTTG
1 TCGGGCTAAG-CCCGAAGGCATTTG
149374879 AGCGAGTCGT
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 22 0.25
81 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:149382813 original size:79 final size:82
Alignment explanation
Indices: 149382673--149382857 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
149382663 TCGAATGATG
* * *
149382673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
149382737 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
149382753 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
149382815 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
149382833 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
149382858 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:149382865 original size:40 final size:40
Alignment explanation
Indices: 149382674--149382865 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
149382664 CGAATGATGT
* * * * *
149382674 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
149382714 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
149382754 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
149382793 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
149382833 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
149382866 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:149382888 original size:79 final size:79
Alignment explanation
Indices: 149382673--149382890 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
149382663 TCGAATGATG
* * * * ** *
149382673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
149382736 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
149382753 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
149382818 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
149382833 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
149382891 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:149391085 original size:40 final size:39
Alignment explanation
Indices: 149390999--149391182 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
149390989 AAATTGAATG
* * * * *
149390999 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
149391039 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
*
149391079 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
149391119 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
149391158 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
149391183 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:149399200 original size:40 final size:39
Alignment explanation
Indices: 149399114--149399297 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
149399104 AAATTGAATG
* * * * *
149399114 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
149399154 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
149399194 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
149399234 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
149399273 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
149399298 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:149407645 original size:29 final size:28
Alignment explanation
Indices: 149407557--149407658 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
149407547 TACTCAATCA
* *
149407557 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
149407586 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
149407615 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
149407644 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
149407659 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:149415590 original size:29 final size:28
Alignment explanation
Indices: 149415502--149415603 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
149415492 TACTCAATCA
* *
149415502 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
149415531 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
149415560 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
149415589 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
149415604 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:149419573 original size:153 final size:153
Alignment explanation
Indices: 149419295--149419599 Score: 592
Period size: 153 Copynumber: 2.0 Consensus size: 153
149419285 ACGGGAGAAA
149419295 AACGAGAAATTGACGGTTAGATCCCTTTTTACCAATTTGGTGTCAAGGTAAGTTCATGTGTAAAT
1 AACGAGAAATTGACGGTTAGATCCCTTTTTACCAATTTGGTGTCAAGGTAAGTTCATGTGTAAAT
149419360 AATGAAATGTTGTATCATGTTTTAATGATTTATTAATGTATGAATTTCTATGTTTAATTGTTATG
66 AATGAAATGTTGTATCATGTTTTAATGATTTATTAATGTATGAATTTCTATGTTTAATTGTTATG
149419425 ATGAGTGTATGAACAGCATTATT
131 ATGAGTGTATGAACAGCATTATT
149419448 AACGAGAAATTGACGGTTAGATCCCTTTTTACCAATTTGGTGTCAAGGTAAGTTCATGTGTAAAT
1 AACGAGAAATTGACGGTTAGATCCCTTTTTACCAATTTGGTGTCAAGGTAAGTTCATGTGTAAAT
*
149419513 AGTGAAATGTTGTATCATGTTTTAATGATTTATTAATGTATGAATTTCTATGTTTAATTGTTATG
66 AATGAAATGTTGTATCATGTTTTAATGATTTATTAATGTATGAATTTCTATGTTTAATTGTTATG
*
149419578 ATGAGTGTATGAACAGTATTAT
131 ATGAGTGTATGAACAGCATTAT
149419600 GGTCTATGAG
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 150 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (153 bp):
AACGAGAAATTGACGGTTAGATCCCTTTTTACCAATTTGGTGTCAAGGTAAGTTCATGTGTAAAT
AATGAAATGTTGTATCATGTTTTAATGATTTATTAATGTATGAATTTCTATGTTTAATTGTTATG
ATGAGTGTATGAACAGCATTATT
Found at i:149420408 original size:16 final size:16
Alignment explanation
Indices: 149420387--149420418 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
149420377 GGAAAAGGAA
149420387 AGACAGGCATAATTGT
1 AGACAGGCATAATTGT
*
149420403 AGACAGGTATAATTGT
1 AGACAGGCATAATTGT
149420419 CGAATAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (16 bp):
AGACAGGCATAATTGT
Found at i:149424548 original size:20 final size:20
Alignment explanation
Indices: 149424523--149424560 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
149424513 GTTTATTCGC
*
149424523 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
149424543 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
149424561 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:149426220 original size:28 final size:28
Alignment explanation
Indices: 149426188--149426255 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
149426178 CGTAGATCAT
149426188 GAAATTACCCCTAAAGAGCAAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
*
149426216 GAAATTACCCCTAAAGAGCGAAATTACC
1 GAAATTACCCCTAAAGAGCAAAATTACC
*
149426244 GATA-TACCCCTA
1 GAAATTACCCCTA
149426256 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.12, T:0.19
Consensus pattern (28 bp):
GAAATTACCCCTAAAGAGCAAAATTACC
Found at i:149434060 original size:80 final size:81
Alignment explanation
Indices: 149433920--149434126 Score: 226
Period size: 80 Copynumber: 2.6 Consensus size: 81
149433910 CGGAATACAA
* * *
149433920 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCC-AGATAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGAGATAGAACGACTAGCACAAAT
*
149433984 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* *
149434000 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGA-AT-GTA-GTCACTAGCACAA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGAGATAGAACG--ACTAGCACAA
* *
149434062 TTGCCTTCGGGTCTTAAC
64 ATGCCTTCGGGTATTAAC
** * ** * *
149434080 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCG-GATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGAGATA
149434127 TCATTCAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 102 0.96
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGAGATAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:149434127 original size:40 final size:40
Alignment explanation
Indices: 149433920--149434127 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
149433910 CGGAATACAA
* *
149433920 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
149433960 CCAGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
149434000 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
149434040 CCGAATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * *
149434080 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
149434120 CCGGATAT
1 CCGGATAT
149434128 CATTCAATTG
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
40 136 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149443506 original size:24 final size:24
Alignment explanation
Indices: 149443467--149443520 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
149443457 CCGGTTAGGT
* * *
149443467 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
149443491 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
149443515 TCCCGG
1 TCCCGG
149443521 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:149443645 original size:58 final size:59
Alignment explanation
Indices: 149443554--149443674 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
149443544 CCCTCCCCAA
* *
149443554 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
149443613 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
149443671 TCCC
1 TCCC
149443675 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:149444095 original size:24 final size:24
Alignment explanation
Indices: 149444068--149444145 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
149444058 CCGGTTAGGT
* *
149444068 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149444092 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149444116 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149444140 TCCCGG
1 TCCCGG
149444146 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:149444476 original size:42 final size:42
Alignment explanation
Indices: 149444332--149445030 Score: 815
Period size: 42 Copynumber: 16.5 Consensus size: 42
149444322 CACATTGCTG
* * * * * *
149444332 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
149444375 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
149444419 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
149444460 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149444503 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
149444545 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149444587 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149444630 CCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149444672 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
149444713 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149444754 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
149444797 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
149444839 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149444882 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
149444925 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
149444967 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149445010 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149445031 AGCAGCAGGG
Statistics
Matches: 577, Mismatches: 60, Indels: 38
0.85 0.09 0.06
Matches are distributed among these distances:
41 63 0.11
42 257 0.45
43 254 0.44
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:149445051 original size:85 final size:84
Alignment explanation
Indices: 149444357--149445034 Score: 820
Period size: 85 Copynumber: 8.0 Consensus size: 84
149444347 GCCTTGGACG
* * *
149444357 CCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-CTTG
149444422 G-TCGTGCGGGAGCCTCG-GCCA
64 GAT-GTGCGGGAGCCTCGAG-CA
* * ** * *
149444443 CCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTG
* *
149444507 G-TCGTGCGAGAGCCTCGGGCA
64 GAT-GTGCGGGAGCCTCGAGCA
* *
149444528 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG
*
149444592 ATGTGCGGGAGCCTCGGGCA
65 ATGTGCGGGAGCCTCGAGCA
*
149444612 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTG
* *
149444676 G-TCGTGCGAGAGCCTCG-GGA
64 GAT-GTGCGGGAGCCTCGAGCA
*
149444696 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCTTGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGA
*
149444760 TGTGCGGGAGCCTCGGGCA
66 TGTGCGGGAGCCTCGAGCA
* * * *
149444779 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG
*
149444844 ATGTGCGGGAGCCTCGAACA
65 ATGTGCGGGAGCCTCGAGCA
* *
149444864 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAG-GCCTTG
149444929 GATGTGCGGGAGCCTCGAGCA
64 GATGTGCGGGAGCCTCGAGCA
* * * ** * *
149444950 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTT
*
149445013 GGATGTGCGGGTGCCTCGAGCA
63 GGATGTGCGGGAGCCTCGAGCA
149445035 GCAGGGGCAC
Statistics
Matches: 526, Mismatches: 50, Indels: 33
0.86 0.08 0.05
Matches are distributed among these distances:
82 19 0.04
83 46 0.09
84 116 0.22
85 299 0.57
86 45 0.09
87 1 0.00
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (84 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGA
TGTGCGGGAGCCTCGAGCA
Found at i:149452483 original size:179 final size:177
Alignment explanation
Indices: 149452158--149452512 Score: 507
Period size: 179 Copynumber: 2.0 Consensus size: 177
149452148 GTAAGGAGTT
* * *
149452158 AGTTAAACACTTGGCCGTGCCGCCTCCCGGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
* * * * * *
149452223 TGCGAGCTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTCTGCCGTGCCGCCGTGCCATG
66 TGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCAT-
*
149452288 CCATGCCATACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
130 -CATGCCATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
*
149452337 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGCACAGCGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGA
*
149452402 GTGCGAGC-CCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCATCATGCCAT
65 GTGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCAT
** *
149452466 -ATTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
130 CATGCCA-T--ACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
149452513 TCAATTAAAA
Statistics
Matches: 157, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
176 4 0.03
177 1 0.01
179 110 0.70
180 42 0.27
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (177 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
TGCGAGCTCCCAACTGTTGGCGGCCCGAGCACTTGTTCAATTATCTACCGTGCCACCATGCCATC
ATGCCATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:149452910 original size:24 final size:24
Alignment explanation
Indices: 149452871--149452924 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
149452861 CCGGTTAGGT
* * *
149452871 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
149452895 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
149452919 TCCCGG
1 TCCCGG
149452925 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:149453049 original size:58 final size:59
Alignment explanation
Indices: 149452958--149453078 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
149452948 CCCTCCCCAA
* *
149452958 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
149453017 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
149453075 TCCC
1 TCCC
149453079 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:149453529 original size:24 final size:24
Alignment explanation
Indices: 149453475--149453549 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
149453465 CCGGTTAGGT
*
149453475 TCCCGGCGGTGCTCCGGCGA-TC-
1 TCCCGGCGGTGCTCCGGCGAGCCA
149453497 -CCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149453520 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149453544 TCCCGG
1 TCCCGG
149453550 AATATCGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
21 19 0.39
22 1 0.02
24 29 0.59
ACGTcount: A:0.07, C:0.43, G:0.37, T:0.13
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:149454034 original size:43 final size:43
Alignment explanation
Indices: 149453736--149454421 Score: 852
Period size: 42 Copynumber: 16.5 Consensus size: 43
149453726 CACATTGCTG
* * * * * *
149453736 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149453779 CTT-GTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
149453820 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
149453862 CCTGGTCGT---GGAG-CTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
149453901 CTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149453943 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGG--
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149453981 C-TGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149454022 CTTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149454064 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149454104 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
149454145 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * **
149454188 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** *
149454230 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
149454273 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * * **
149454316 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
149454358 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
149454401 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149454422 AGCAGCAGGG
Statistics
Matches: 579, Mismatches: 41, Indels: 46
0.87 0.06 0.07
Matches are distributed among these distances:
36 4 0.01
37 12 0.02
38 13 0.02
39 41 0.07
40 43 0.07
41 105 0.18
42 193 0.33
43 167 0.29
44 1 0.00
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:149454247 original size:85 final size:85
Alignment explanation
Indices: 149453736--149454421 Score: 844
Period size: 85 Copynumber: 8.2 Consensus size: 85
149453726 CACATTGCTG
* * * * * *
149453736 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTT-GTCGTGCGGGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149453799 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
* *
149453820 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGT---GGAG-CTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149453880 CCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
* *
149453901 CTTGGTCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCGTGC-GGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149453963 GCACCATCGGCACCTAGG--
66 GCACCATCGGCACCTAGGCC
149453981 C-TGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149454043 GCACCATCGGCAACCTAGGCC
66 GCACCATCGGC-ACCTAGGCC
149454064 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149454125 GCACCATCGGCACCTAGGCC
66 GCACCATCGGCACCTAGGCC
*
149454145 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * **
149454210 GCACCATCGGCACTTTGGTG
66 GCACCATCGGCACCTAGGCC
** *
149454230 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
149454294 GGCACCATCGGCACCTTGGTGC
65 GGCACCATCGGCACCTAGG-CC
* * * * **
149454316 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* *
149454378 GGACACCATCGGCAACCTAGGAC
64 GGGCACCATCGGC-ACCTAGGCC
* *
149454401 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149454422 AGCAGCAGGG
Statistics
Matches: 544, Mismatches: 36, Indels: 43
0.87 0.06 0.07
Matches are distributed among these distances:
78 24 0.04
79 32 0.06
80 16 0.03
81 70 0.13
82 77 0.14
83 85 0.16
84 49 0.09
85 153 0.28
86 38 0.07
ACGTcount: A:0.14, C:0.34, G:0.34, T:0.18
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGCC
Found at i:149454451 original size:43 final size:43
Alignment explanation
Indices: 149453908--149454457 Score: 338
Period size: 43 Copynumber: 13.2 Consensus size: 43
149453898 GCCCTTGGTC
* **
149453908 GTGCGAGAGCCTCG-GCCACCATCGGCA-CCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCGGCACCCT-GGTGGCTTGGAT
*
149453949 CGTGC-GGAGCCTCG-GCACCATCGGCA-CCT--AGGC-TGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * **
149453986 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * **
149454028 CGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
**
149454070 CGTGC-GGAGCCTCG-GCACCATCGGCA-CCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
**
149454110 CGTGCGGGAGCCTCG-GCACCATCGGCA-CCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * ** *
149454151 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* **
149454194 CGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGT-GCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * **
149454237 GTGCGGGAGCCTCGAACACCATCGGCAACCTCGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCT-GGTGGCTTGGAT
* * *
149454279 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * *
149454323 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
* * *
149454365 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAG-GACGTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATCGGCACCCTGGTGGC-TTGGAT
* * ** *
149454408 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
149454451 GTGCGGG
1 GTGCGGG
149454458 CTAAAGAAAA
Statistics
Matches: 444, Mismatches: 40, Indels: 47
0.84 0.08 0.09
Matches are distributed among these distances:
36 4 0.01
37 13 0.03
38 13 0.03
39 3 0.01
40 33 0.07
41 73 0.16
42 140 0.32
43 161 0.36
44 4 0.01
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCCTGGTGGCTTGGAT
Found at i:149462306 original size:24 final size:24
Alignment explanation
Indices: 149462267--149462320 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
149462257 CCGGTTAGGT
* * *
149462267 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
149462291 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
149462315 TCCCGG
1 TCCCGG
149462321 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:149462445 original size:58 final size:59
Alignment explanation
Indices: 149462354--149462474 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
149462344 CCCTCCCCAA
* *
149462354 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
149462413 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
149462471 TCCC
1 TCCC
149462475 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:149462898 original size:24 final size:24
Alignment explanation
Indices: 149462871--149462948 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
149462861 CCGGTTAGGT
* *
149462871 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149462895 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149462919 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149462943 TCCCGG
1 TCCCGG
149462949 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:149463269 original size:85 final size:85
Alignment explanation
Indices: 149463135--149463834 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
149463125 CACATTGCTG
* * * * * *
149463135 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149463200 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
149463222 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149463285 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149463306 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149463370 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
149463390 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149463454 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149463475 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149463538 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
149463558 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
149463623 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
149463643 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149463708 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
149463729 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
149463793 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
149463815 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
149463835 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:149463279 original size:42 final size:42
Alignment explanation
Indices: 149463135--149463834 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
149463125 CACATTGCTG
* * * * * *
149463135 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
149463178 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
149463222 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
149463263 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149463306 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
149463348 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149463390 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
149463433 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149463475 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
149463516 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149463558 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
149463601 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
149463643 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149463686 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
149463729 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
149463771 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149463814 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149463835 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:149471719 original size:24 final size:24
Alignment explanation
Indices: 149471680--149471733 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
149471670 CCGGTTAGGT
* * *
149471680 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
149471704 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
149471728 TCCCGG
1 TCCCGG
149471734 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:149471858 original size:58 final size:59
Alignment explanation
Indices: 149471767--149471887 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
149471757 CCCTCCCCAA
* *
149471767 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
149471826 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
149471884 TCCC
1 TCCC
149471888 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:149472311 original size:24 final size:24
Alignment explanation
Indices: 149472284--149472361 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
149472274 CCGGTTAGGT
* *
149472284 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149472308 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149472332 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149472356 TCCCGG
1 TCCCGG
149472362 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:149472682 original size:85 final size:85
Alignment explanation
Indices: 149472548--149473247 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
149472538 CACATTGCTG
* * * * * *
149472548 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149472613 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
149472635 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149472698 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149472719 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149472783 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
149472803 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149472867 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149472888 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149472951 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
149472971 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
149473036 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
149473056 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149473121 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
149473142 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
149473206 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
149473228 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
149473248 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:149472692 original size:42 final size:42
Alignment explanation
Indices: 149472548--149473247 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
149472538 CACATTGCTG
* * * * * *
149472548 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
149472591 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
149472635 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
149472676 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149472719 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
149472761 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149472803 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
149472846 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149472888 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
149472929 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149472971 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
149473014 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
149473056 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149473099 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
149473142 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
149473184 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149473227 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149473248 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:149481132 original size:24 final size:24
Alignment explanation
Indices: 149481093--149481146 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
149481083 CCGGTTAGGT
* * *
149481093 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
149481117 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
149481141 TCCCGG
1 TCCCGG
149481147 GATACACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:149481271 original size:58 final size:59
Alignment explanation
Indices: 149481180--149481300 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
149481170 CCCTCCCCAA
* *
149481180 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
149481239 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
149481297 TCCC
1 TCCC
149481301 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:149481724 original size:24 final size:24
Alignment explanation
Indices: 149481697--149481774 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
149481687 CCGGTTAGGT
* *
149481697 TCCCGGCGGTGCTCCGGCGATCTA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149481721 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149481745 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
149481769 TCCCGG
1 TCCCGG
149481775 AATATCGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.08, C:0.41, G:0.36, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:149482095 original size:85 final size:85
Alignment explanation
Indices: 149481961--149482660 Score: 861
Period size: 85 Copynumber: 8.2 Consensus size: 85
149481951 CACATTGCTG
* * * * * *
149481961 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149482026 CCACCATCGGCAACCTAGGCGC
65 GCACCATCGGC-ACCTAGGCGC
* * * ** *
149482048 C-TGG-TCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149482111 CCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149482132 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149482196 GCACCATCGGCACCTTGGTG-
65 GCACCATCGGCACCTAGGCGC
149482216 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
149482280 GCACCATCGGCAACCTAGGC-C
65 GCACCATCGGC-ACCTAGGCGC
*
149482301 CTTGG-TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
149482364 CCACCATCGGCACCTAGGC-C
65 GCACCATCGGCACCTAGGCGC
*
149482384 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
149482449 GCACCATCGGCACTTTGGTG-
65 GCACCATCGGCACCTAGGCGC
** *
149482469 CTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
149482534 GCACCATCGGCACCTTGGTGC
65 GCACCATCGGCACCTAGGCGC
* * * * **
149482555 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG
*
149482619 ACACCATCGGCAACCTAGGACG-
65 GCACCATCGGC-ACCTAGG-CGC
*
149482641 -TTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
149482661 AGCAGCAGGG
Statistics
Matches: 549, Mismatches: 47, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
83 39 0.07
84 119 0.22
85 328 0.60
86 61 0.11
87 2 0.00
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCACCTAGGCGC
Found at i:149482105 original size:42 final size:42
Alignment explanation
Indices: 149481961--149482660 Score: 833
Period size: 42 Copynumber: 16.5 Consensus size: 42
149481951 CACATTGCTG
* * * * * *
149481961 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
*
149482004 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC-C
*
149482048 C-TGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
149482089 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149482132 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
149482174 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149482216 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
149482259 C-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
149482301 CTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
149482342 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
149482384 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
149482427 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
149482469 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149482512 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * * **
149482555 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
149482597 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
149482640 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
149482661 AGCAGCAGGG
Statistics
Matches: 581, Mismatches: 58, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
41 33 0.06
42 280 0.48
43 265 0.46
44 3 0.01
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:149494804 original size:27 final size:28
Alignment explanation
Indices: 149494774--149494843 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
149494764 ATAATAAGTC
*
149494774 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
149494801 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
149494829 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
149494844 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:149496836 original size:43 final size:44
Alignment explanation
Indices: 149496742--149496890 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 44
149496732 AGGATTACGG
* *
149496742 TATG-TGATTTCGTGTAAGACCACGT-TGGGACGTTGGCATCGA
1 TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
* * *
149496784 TTTGA-GATTTACGTGTATGAACATGTCTGGGACATTGGCATC-A
1 TATGATGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGA
* * *
149496827 TAT-ATGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGA
1 TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
* * *
149496870 TA-GTTGATTACTTGTAAGACC
1 TATGATGATTTCGTGTAAGACC
149496891 TCATCTGGGA
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
42 35 0.40
43 38 0.44
44 14 0.16
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (44 bp):
TATGATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA
Found at i:149496898 original size:43 final size:42
Alignment explanation
Indices: 149496809--149496909 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 42
149496799 TATGAACATG
* * * *
149496809 TCTGGGACATTGGCATCATATATGATTTCGTGTAAGACCCTG
1 TCTGGGATAGTGGCATCATATATGATTACGTGTAAGACCCTA
*
149496851 TCTGGGATAGTGGCATCGATAGT-TGATTACTTGTAAGA-CCTCA
1 TCTGGGATAGTGGCATC-ATA-TATGATTACGTGTAAGACCCT-A
149496894 TCTGGGAT-GTAGGCAT
1 TCTGGGATAGT-GGCAT
149496910 TGTACGAGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
42 20 0.40
43 29 0.58
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TCTGGGATAGTGGCATCATATATGATTACGTGTAAGACCCTA
Found at i:149498296 original size:17 final size:18
Alignment explanation
Indices: 149498274--149498308 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
149498264 TTACATTGGA
149498274 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
149498291 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
149498309 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:149498805 original size:28 final size:27
Alignment explanation
Indices: 149498774--149498920 Score: 143
Period size: 28 Copynumber: 5.1 Consensus size: 27
149498764 ACATACATGC
* *
149498774 ATATGGCCAACTTGGCCCAATCTCATTT
1 ATATGGCCCA-TTGGCCCAATCACATTT
*
149498802 ATATGGCCCATCAGGCCCAATTCACATTT
1 ATATGGCCCAT-TGGCCCAA-TCACATTT
* *
149498831 CATATGGCCCATCAGGCCCAAATCACCTTT
1 -ATATGGCCCAT-TGGCCC-AATCACATTT
*
149498861 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATT-GGCCCAATCACATTT
*
149498889 ATATGGTCCATTTGGCCCAAATCACA-TT
1 ATATGGCCCA-TTGGCCC-AATCACATTT
149498917 ATAT
1 ATAT
149498921 TCATGCTCAC
Statistics
Matches: 103, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.01
28 44 0.43
29 31 0.30
30 25 0.24
31 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (27 bp):
ATATGGCCCATTGGCCCAATCACATTT
Done.