Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 484 of 770
Found at i:149500757 original size:46 final size:46
Alignment explanation
Indices: 149500704--149500879 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
149500694 TATTTGGGCA
149500704 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
149500750 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
149500797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
149500843 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
149500880 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:149500859 original size:93 final size:93
Alignment explanation
Indices: 149500700--149500871 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
149500690 GGGATATTTG
* *
149500700 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
149500765 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
149500793 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
149500858 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
149500872 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:149503847 original size:15 final size:15
Alignment explanation
Indices: 149503827--149503895 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
149503817 GTATCTTGGG
149503827 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
149503842 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
149503857 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
149503872 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
149503887 TTTCTTTAT
1 TTTCTTTAT
149503896 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:149503896 original size:30 final size:30
Alignment explanation
Indices: 149503818--149503905 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
149503808 CATAGTATCG
* * * *
149503818 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
149503848 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
149503878 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
149503906 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:149506339 original size:46 final size:46
Alignment explanation
Indices: 149506289--149506464 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
149506279 TATTTGGGCA
149506289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
149506335 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
149506382 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
149506428 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
149506465 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:149506444 original size:93 final size:93
Alignment explanation
Indices: 149506285--149506456 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
149506275 TGGATATTTG
* *
149506285 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
149506350 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
149506378 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
149506443 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
149506457 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:149508822 original size:16 final size:16
Alignment explanation
Indices: 149508801--149508833 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
149508791 AAAAATTTAA
149508801 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
149508817 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
149508833 G
1 G
149508834 GGCATTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.06, G:0.33, T:0.48
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:149510300 original size:93 final size:93
Alignment explanation
Indices: 149510188--149510359 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
149510178 CGCCCATAAG
* *
149510188 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149510253 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
149510281 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149510346 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
149510360 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:149510356 original size:46 final size:46
Alignment explanation
Indices: 149510181--149510356 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
149510171 TGTAACCCGC
* * *
149510181 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
149510227 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
149510277 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
149510320 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
149510357 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:149515745 original size:93 final size:93
Alignment explanation
Indices: 149515633--149515804 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
149515623 CGCCCATAAG
* *
149515633 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149515698 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
149515726 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149515791 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
149515805 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:149515801 original size:46 final size:46
Alignment explanation
Indices: 149515626--149515801 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
149515616 TGTAACCCGC
* * *
149515626 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
149515672 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
149515722 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
149515765 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
149515802 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:149521188 original size:93 final size:93
Alignment explanation
Indices: 149521076--149521247 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
149521066 CGCCCATAAG
* *
149521076 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149521141 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
149521169 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
149521234 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
149521248 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:149521244 original size:46 final size:46
Alignment explanation
Indices: 149521069--149521244 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
149521059 TGTAACCCGC
* * *
149521069 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
149521115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
149521165 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
149521208 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
149521245 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:149529416 original size:29 final size:29
Alignment explanation
Indices: 149529383--149529543 Score: 216
Period size: 29 Copynumber: 5.6 Consensus size: 29
149529373 GTGACGAGAT
149529383 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
149529412 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
149529441 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
149529470 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * *
149529499 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
149529528 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
149529544 AAATCGAGTA
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:149539939 original size:39 final size:40
Alignment explanation
Indices: 149539846--149539992 Score: 121
Period size: 39 Copynumber: 3.8 Consensus size: 40
149539836 AATTGAATGA
* * **
149539846 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
149539885 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-CATAC
*
149539925 -ATCCGGGCTAAGACCCGAA-GC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
149539963 TATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
149539993 AAATCGTGAT
Statistics
Matches: 87, Mismatches: 12, Indels: 18
0.74 0.10 0.15
Matches are distributed among these distances:
37 4 0.05
38 16 0.18
39 49 0.56
40 18 0.21
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:149540006 original size:39 final size:38
Alignment explanation
Indices: 149539841--149540024 Score: 119
Period size: 39 Copynumber: 4.8 Consensus size: 38
149539831 TGAGAAATTG
* *
149539841 AATG-ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
149539880 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
149539917 AGTGCTACATCCGGGCTAAGACCCGAA-GCATTCGTGCGA
1 AATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A
* *
149539956 GTCAT-TCTATCCGGGCTAAGA-CCGAAGGCATTTGTGCA
1 --AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
149539994 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
149540025 CTTGGTGCGG
Statistics
Matches: 110, Mismatches: 23, Indels: 23
0.71 0.15 0.15
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 17 0.15
39 71 0.65
40 15 0.14
41 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:149542593 original size:40 final size:40
Alignment explanation
Indices: 149542534--149542675 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
149542524 AAATTGAATG
* * *
149542534 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
149542574 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
149542614 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
149542654 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
149542676 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:149542676 original size:40 final size:39
Alignment explanation
Indices: 149542573--149542701 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
149542563 TGCTGGAAAT
* * *
149542573 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
149542613 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
149542653 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
149542693 TATATCCGG
1 TATATCCGG
149542702 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:149550617 original size:40 final size:40
Alignment explanation
Indices: 149550558--149550699 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
149550548 AAATTGAATG
* * *
149550558 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
149550598 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
149550638 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
149550678 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
149550700 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:149550700 original size:40 final size:39
Alignment explanation
Indices: 149550597--149550725 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
149550587 TGCTGGAAAT
* * *
149550597 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
149550637 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
149550677 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
149550717 TATATCCGG
1 TATATCCGG
149550726 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:149552295 original size:38 final size:38
Alignment explanation
Indices: 149552130--149552287 Score: 226
Period size: 38 Copynumber: 4.1 Consensus size: 38
149552120 TCCAGTCACT
* * * *
149552130 AGCACAAAACCTGCGGGACTTTAAGCTCGAATATAATACC
1 AGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAATACC
* *
149552170 AGCACTAAGCCTGCGGGATTTAACCAGGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACC
*
149552208 AGCACGAAGCCTGCGGGATTTAACCCAGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACC
*
149552246 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACC
149552284 AGCA
1 AGCA
149552288 TATAGCCTAG
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 87 0.81
39 5 0.05
40 16 0.15
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACC
Found at i:149553763 original size:14 final size:14
Alignment explanation
Indices: 149553744--149553770 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
149553734 CTATGCATAA
149553744 CATTACTTACATTC
1 CATTACTTACATTC
149553758 CATTACTTACATT
1 CATTACTTACATT
149553771 ATTCAAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (14 bp):
CATTACTTACATTC
Found at i:149565115 original size:15 final size:16
Alignment explanation
Indices: 149565081--149565118 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
149565071 CACACGGCCG
*
149565081 TGTCACCTGGCTGTGTA
1 TGTCACCTGGC-GCGTA
149565098 TGTCACCTGGC-CGTA
1 TGTCACCTGGCGCGTA
149565113 TGTCAC
1 TGTCAC
149565119 ACACTGCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.13, C:0.29, G:0.26, T:0.32
Consensus pattern (16 bp):
TGTCACCTGGCGCGTA
Found at i:149566371 original size:25 final size:25
Alignment explanation
Indices: 149566337--149566387 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
149566327 ATTCATCAAG
149566337 AATGTAATAATAAAGCATTTAAAAC
1 AATGTAATAATAAAGCATTTAAAAC
149566362 AATGTAATAATAAAGCATTTAAAAC
1 AATGTAATAATAAAGCATTTAAAAC
149566387 A
1 A
149566388 CAATTACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (25 bp):
AATGTAATAATAAAGCATTTAAAAC
Found at i:149571334 original size:47 final size:47
Alignment explanation
Indices: 149571263--149571514 Score: 387
Period size: 47 Copynumber: 5.3 Consensus size: 47
149571253 CCCTTCGGGA
* * * * * *
149571263 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
149571310 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571404 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571453 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571502 CTTATCACATATA
1 CTTATCACATATA
149571515 CTATCATGTA
Statistics
Matches: 193, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 99 0.51
49 94 0.49
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:149571341 original size:25 final size:25
Alignment explanation
Indices: 149571313--149571391 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
149571303 ACTCGGCCCT
149571313 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
149571338 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
149571360 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
149571385 ATCACAT
1 ATCACAT
149571392 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:149571437 original size:49 final size:49
Alignment explanation
Indices: 149571263--149571514 Score: 381
Period size: 49 Copynumber: 5.3 Consensus size: 49
149571253 CCCTTCGGGA
* * * * *
149571263 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
149571310 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571357 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571404 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
149571453 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
149571502 CTTATCACATATA
1 CTTATCACATATA
149571515 CTATCATGTA
Statistics
Matches: 192, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.01
47 92 0.48
49 99 0.52
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:149575680 original size:40 final size:39
Alignment explanation
Indices: 149575554--149575757 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 39
149575544 CGAATACACG
* * * * *
149575554 TCACTAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCC-GGATACA
* * ** *
149575594 ACACCAGCACGAATGCTCTTCGG-GTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGC-CGGATACA
149575633 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
149575673 TCACTAGCACGAATGCTCTTC-GAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGA-ACTTAG-CCGGATACA
*
149575713 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
149575753 TCACT
1 TCACT
149575758 CTCAATTCTC
Statistics
Matches: 145, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 34 0.23
40 109 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATACA
Found at i:149575732 original size:80 final size:78
Alignment explanation
Indices: 149575554--149575757 Score: 273
Period size: 80 Copynumber: 2.6 Consensus size: 78
149575544 CGAATACACG
* * * * * * **
149575554 TCACTAGCATGATTGCTCTTCGGGACCTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGT
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCC-GGATACATCACTAGCACGAATGCTCTTCGGAC
*
149575619 TTAGCACGGATATA
65 TTAGCACGGATACA
*
149575633 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCG-GA
*
149575698 CTTAGCCCGGATACA
64 CTTAGCACGGATACA
149575713 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACT
149575758 CTCAATTCTC
Statistics
Matches: 110, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
79 52 0.47
80 58 0.53
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAATGCTCTTCGGACT
TAGCACGGATACA
Found at i:149578011 original size:97 final size:96
Alignment explanation
Indices: 149577828--149578174 Score: 549
Period size: 97 Copynumber: 3.6 Consensus size: 96
149577818 CCCTTCGGGA
* * * * * * *
149577828 CTTATCACA-TTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACA-TATATAC
1 CTTATCACAGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATAC
*
149577891 ACTTTCACATTCATCACATCGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
149577922 CTTATCACA-TATATACACTTTCACATTCATCACCATCGGCCATTAGGCCTTATCACATGTATAT
1 CTTATCACAGTATATACACTTTCACATTCATCA-CATCGGCCATTAGGCCTTATCACAT-TATAT
149577986 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
149578019 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACA-GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-TATAT
149578084 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
149578117 CTTATCACATGTATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 CTTATCACA-GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
149578175 ATTGTAACAC
Statistics
Matches: 239, Mismatches: 9, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
94 30 0.13
95 19 0.08
97 87 0.36
98 80 0.33
99 23 0.10
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACAGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:149578027 original size:49 final size:48
Alignment explanation
Indices: 149577828--149578174 Score: 558
Period size: 49 Copynumber: 7.2 Consensus size: 48
149577818 CCCTTCGGGA
* * * * *
149577828 CTTATCACATT-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
149577875 CCTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
149577922 CTTATCACA-TATATACACTTTCACATTCATCACCATCGGCCATTAGGC
1 CTTATCACATTATATACACTTTCACATTCATCA-CATCGGCCATTAGGC
149577970 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
149578019 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
149578068 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
149578117 CTTATCACATGTATATA-ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
149578165 CTTATCACAT
1 CTTATCACAT
149578175 ATTGTAACAC
Statistics
Matches: 287, Mismatches: 9, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 71 0.25
48 64 0.22
49 128 0.45
50 23 0.08
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (48 bp):
CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:149578138 original size:146 final size:145
Alignment explanation
Indices: 149577828--149578174 Score: 569
Period size: 146 Copynumber: 2.4 Consensus size: 145
149577818 CCCTTCGGGA
* * * * * *
149577828 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACA-TATATA
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATA
*
149577890 CACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
149577955 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
149577970 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATAT
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-TATAT
149578035 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
65 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
149578100 CA-CATCGGCCATTAGGC
128 CACCATCGGCCATTAGGC
149578117 CTTATCACATGTATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
149578175 ATTGTAACAC
Statistics
Matches: 192, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
142 10 0.05
143 1 0.01
144 39 0.20
146 86 0.45
147 32 0.17
148 24 0.12
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (145 bp):
CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
CATCGGCCATTAGGC
Found at i:149579585 original size:40 final size:40
Alignment explanation
Indices: 149579540--149579707 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
149579530 CGGAATATAA
149579540 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
149579580 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
149579620 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
149579660 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
149579700 CCGGATAT
1 CCGGATAT
149579708 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149587569 original size:40 final size:40
Alignment explanation
Indices: 149587524--149587691 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
149587514 CGGAATATAA
149587524 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
149587564 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
149587604 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
149587644 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
149587684 CCGGATAT
1 CCGGATAT
149587692 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149596863 original size:40 final size:39
Alignment explanation
Indices: 149596703--149596865 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
149596693 TGTGTATGAA
*
149596703 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
149596742 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
149596781 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
149596820 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
149596860 TGTGCG
1 TGTGCG
149596866 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:149596881 original size:40 final size:39
Alignment explanation
Indices: 149596703--149596896 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
149596693 TGTGTATGAA
* *
149596703 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
149596742 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
149596781 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
149596820 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
149596860 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
149596897 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:149604490 original size:40 final size:39
Alignment explanation
Indices: 149604330--149604492 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
149604320 TGTGTATGAA
*
149604330 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
149604369 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
149604408 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
149604447 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
149604487 TGTGCG
1 TGTGCG
149604493 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:149604508 original size:40 final size:39
Alignment explanation
Indices: 149604330--149604523 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
149604320 TGTGTATGAA
* *
149604330 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
149604369 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
149604408 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
149604447 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
149604487 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
149604524 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:149608664 original size:27 final size:27
Alignment explanation
Indices: 149608623--149608676 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
149608613 TGTCATGTGA
* *
149608623 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
149608650 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
149608677 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:149609017 original size:49 final size:50
Alignment explanation
Indices: 149608921--149609167 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
149608911 ATCTATTGTG
*
149608921 AGGTGACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **** *
149608971 -GGTCGCATGTGTAGTACTAAGTGCAGGCCACTATACCTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
149609021 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
149609071 AGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
149609121 -GGTCGCGTGTGTAGTACTAACTGCAGGCTACTATGCGTACCAGATAA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
149609168 CCTTGTCTAC
Statistics
Matches: 161, Mismatches: 34, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 79 0.49
50 47 0.29
51 35 0.22
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:149619467 original size:40 final size:40
Alignment explanation
Indices: 149619423--149619571 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
149619413 GCTACTTGCT
*
149619423 CAAATGTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
149619463 CAAATGCCTTAGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
149619503 CAAATGCCTTCGGGACTTAGCCCGG-AATTGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
149619543 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
149619572 CATCCGAATA
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 97 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:149626278 original size:18 final size:18
Alignment explanation
Indices: 149626225--149626291 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
149626215 AATCGGTTAA
* * *
149626225 TCAGTAGCAATCATTTAT
1 TCAGTAACAGTCAATTAT
* **
149626243 TCAGTATCAGTCGTTTAT
1 TCAGTAACAGTCAATTAT
*
149626261 TCAGTAACGGTCAATTAT
1 TCAGTAACAGTCAATTAT
149626279 TCAGTAACAGTCA
1 TCAGTAACAGTCA
149626292 GTCTTTAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (18 bp):
TCAGTAACAGTCAATTAT
Found at i:149626431 original size:6 final size:6
Alignment explanation
Indices: 149626422--149626451 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
149626412 GTCAGTAATG
*
149626422 GTAACA GTAACA GTAACA GTAATA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA
149626452 ATAGCGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
GTAACA
Found at i:149626431 original size:12 final size:12
Alignment explanation
Indices: 149626414--149626451 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
149626404 TACACTATGT
*
149626414 CAGTAATGGTAA
1 CAGTAATAGTAA
*
149626426 CAGTAACAGTAA
1 CAGTAATAGTAA
149626438 CAGTAATAGTAA
1 CAGTAATAGTAA
149626450 CA
1 CA
149626452 ATAGCGGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.21
Consensus pattern (12 bp):
CAGTAATAGTAA
Found at i:149627394 original size:33 final size:33
Alignment explanation
Indices: 149627342--149627422 Score: 119
Period size: 33 Copynumber: 2.4 Consensus size: 33
149627332 TTCTGTTTCC
* *
149627342 TTCTTTCCTTCCC-TTGTTTCGTCCCTGCTCTCTG
1 TTCTTT-C-TCCCTTTGTTTCCTCCCTACTCTCTG
149627376 TTCTTTCTCCCTTTGTTTCCTCCCTACTCTCTG
1 TTCTTTCTCCCTTTGTTTCCTCCCTACTCTCTG
149627409 TTCTTTCTCCCTTT
1 TTCTTTCTCCCTTT
149627423 CTTTTTCTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
32 4 0.09
33 34 0.77
34 6 0.14
ACGTcount: A:0.01, C:0.38, G:0.07, T:0.53
Consensus pattern (33 bp):
TTCTTTCTCCCTTTGTTTCCTCCCTACTCTCTG
Found at i:149631002 original size:40 final size:40
Alignment explanation
Indices: 149630943--149631084 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
149630933 AAATTGAATG
* * *
149630943 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
149630983 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
149631023 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
149631063 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
149631085 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:149631085 original size:40 final size:39
Alignment explanation
Indices: 149630982--149631094 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
149630972 TGCTGGAAAT
* * **
149630982 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
149631022 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
149631062 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
149631095 ACATGCTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:149634360 original size:40 final size:40
Alignment explanation
Indices: 149634315--149634482 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
149634305 CGGAATATAA
149634315 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
149634355 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
149634395 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
149634435 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
149634475 CCGGATAT
1 CCGGATAT
149634483 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149634465 original size:80 final size:80
Alignment explanation
Indices: 149634331--149634480 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
149634321 ATAACCACGT
* *
149634331 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
149634396 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
149634411 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
149634474 CCCGGAT
64 CCCGGAT
149634481 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:149641616 original size:40 final size:40
Alignment explanation
Indices: 149641473--149641639 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
149641463 TCGGAATATA
* **
149641473 CCGGATATAACCACGTGCACAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
149641512 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
149641552 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
149641592 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
149641632 CCGGATAT
1 CCGGATAT
149641640 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 17 0.17
40 86 0.83
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:149641622 original size:80 final size:79
Alignment explanation
Indices: 149641489--149641637 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
149641479 ATAACCACGT
* *
149641489 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCCC
149641554 GGATGTAGCCACTA
66 GGATGTAGCCACTA
* ** * *
149641568 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
149641631 CCCGGAT
63 CCCGGAT
149641638 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 9 0.15
80 51 0.85
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (79 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:149649016 original size:16 final size:18
Alignment explanation
Indices: 149648995--149649031 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
149648985 AAGGGAGAAT
149648995 AAAG-AAATG-GAAAAAA
1 AAAGAAAATGAGAAAAAA
149649011 AAAGAAAATGATGAAAAAA
1 AAAGAAAATGA-GAAAAAA
149649030 AA
1 AA
149649032 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 5 0.28
19 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (18 bp):
AAAGAAAATGAGAAAAAA
Found at i:149650370 original size:29 final size:29
Alignment explanation
Indices: 149650338--149650440 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
149650328 GTGACGAGAT
* *
149650338 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
149650367 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
149650396 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
149650425 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
149650441 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:149651995 original size:49 final size:49
Alignment explanation
Indices: 149651923--149652080 Score: 307
Period size: 49 Copynumber: 3.2 Consensus size: 49
149651913 GGGGTGTTAC
149651923 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
*
149651972 ATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
149652021 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
149652070 ATCACATATAT
1 ATCACATATAT
149652081 TATTATGTAC
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 107 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (49 bp):
ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:149655031 original size:56 final size:56
Alignment explanation
Indices: 149654965--149655095 Score: 172
Period size: 56 Copynumber: 2.3 Consensus size: 56
149654955 AGACAGGGTT
* ** * ** *
149654965 TTACTTGCACACATATATTGGAGTCACATATCGATGCCAATGTATAAAACGTGGTC
1 TTACTCGCACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTC
*
149655021 TTACTCGCACACATATATCAGAGTCACATATCAATGGCAACATATAAAACATGGTC
1 TTACTCGCACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTC
* *
149655077 TTACTCACGCACATATATC
1 TTACTCGCACACATATATC
149655096 GATGCCATGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (56 bp):
TTACTCGCACACATATATCAGAGTCACATATCAATGCCAACATATAAAACATGGTC
Found at i:149663077 original size:49 final size:50
Alignment explanation
Indices: 149663009--149663244 Score: 242
Period size: 49 Copynumber: 4.7 Consensus size: 50
149662999 AGGTCATGTT
* * *
149663009 TGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
* * * * * *
149663058 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACATG
* * * ** *
149663109 TGTAGTACTAAGTGTAGGCTACTACGCGTATCAGATGGTTAGGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
* ** *
149663159 TGTAGTACTAAGTGCAGGCTACTACATGTACGGGATAATT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
* * * *
149663208 TGTAGCACAAAGAGCAGGCTACTATGTGTACCAGATA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
149663245 GCTTTGGCTA
Statistics
Matches: 153, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 71 0.46
50 44 0.29
51 38 0.25
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACATG
Found at i:149663196 original size:101 final size:100
Alignment explanation
Indices: 149663009--149663189 Score: 263
Period size: 100 Copynumber: 1.8 Consensus size: 100
149662999 AGGTCATGTT
* * *
149663009 TGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
**
149663074 GGCTACTATGCGTACCCGATAACTTCGATCACGTG
66 GGCTACTACACGTACCCGATAACTTCGATCACGTG
* ** *
149663109 TGTAGTACTAAGTGTAGGCTACTACGCGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAATT-GGTCACATGTGTAGTACTAAGTGC
*
149663174 AGGCTACTACATGTAC
65 AGGCTACTACACGTAC
149663190 GGGATAATTG
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
100 35 0.50
101 35 0.50
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
TGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCA
GGCTACTACACGTACCCGATAACTTCGATCACGTG
Found at i:149667124 original size:5 final size:5
Alignment explanation
Indices: 149667099--149667163 Score: 57
Period size: 5 Copynumber: 13.4 Consensus size: 5
149667089 TGATACGTGG
* * *
149667099 GATAT GATAT -ACAT GAT-T GATAT GATAT GCACAT GACAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
149667147 GCATAT GATAT G-TAT GA
1 G-ATAT GATAT GATAT GA
149667164 AGTGCACATG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 14 0.28
5 27 0.54
6 9 0.18
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:149667134 original size:20 final size:19
Alignment explanation
Indices: 149667101--149667179 Score: 76
Period size: 20 Copynumber: 4.2 Consensus size: 19
149667091 ATACGTGGGA
149667101 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
149667118 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
*
149667139 TATGATATGCATATGATATG
1 TATGATATGCACATGAT-TG
149667159 TATGA-AGTGCACATGA-TG
1 TATGATA-TGCACATGATTG
149667177 TAT
1 TAT
149667180 TCATAAATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.25
19 1 0.02
20 36 0.69
21 2 0.04
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:149667153 original size:11 final size:11
Alignment explanation
Indices: 149667118--149667158 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
149667108 TACATGATTG
149667118 ATATGATATGC
1 ATATGATATGC
* *
149667129 ACATGACATG-
1 ATATGATATGC
149667139 -TATGATATGC
1 ATATGATATGC
149667149 ATATGATATG
1 ATATGATATG
149667159 TATGAAGTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
11 17 0.71
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (11 bp):
ATATGATATGC
Found at i:149667348 original size:25 final size:26
Alignment explanation
Indices: 149667225--149667373 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
149667215 AAGGAACTGC
149667225 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
149667251 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
149667277 AAAAGGGCTTATGCCCTAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
149667303 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
149667329 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
149667354 AAAAGGGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
149667374 ATTAAAAGAG
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.29
26 81 0.71
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:149675269 original size:20 final size:19
Alignment explanation
Indices: 149675236--149675314 Score: 85
Period size: 20 Copynumber: 4.2 Consensus size: 19
149675226 ATACGTGGGA
149675236 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
149675253 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
149675274 TATGATATGCACATGATATG
1 TATGATATGCACATGAT-TG
149675294 TATGA-AGTGCACATGA-TG
1 TATGATA-TGCACATGATTG
149675312 TAT
1 TAT
149675315 TCATAAATGC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
18 13 0.24
19 1 0.02
20 38 0.70
21 2 0.04
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.34
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:149675389 original size:26 final size:26
Alignment explanation
Indices: 149675360--149675560 Score: 325
Period size: 26 Copynumber: 7.8 Consensus size: 26
149675350 GAGGAAGTGC
149675360 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
149675386 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
149675412 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
149675438 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
149675464 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
149675490 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
149675516 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
149675541 AAAAGAGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
149675561 ATTAAAAGAG
Statistics
Matches: 164, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.20
26 131 0.80
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:149675438 original size:52 final size:52
Alignment explanation
Indices: 149675360--149675573 Score: 364
Period size: 52 Copynumber: 4.2 Consensus size: 52
149675350 GAGGAAGTGC
149675360 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
149675412 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* *
149675464 AAAAGGGCTTATGCCCCAGTTTACTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
149675516 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAGAGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
149675564 AAAAGAGGCT
1 AAAAG-GGCT
149675574 AGGCCTCCAG
Statistics
Matches: 156, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
48 5 0.03
49 8 0.05
50 8 0.05
51 23 0.15
52 112 0.72
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:149676642 original size:23 final size:24
Alignment explanation
Indices: 149676604--149676648 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
149676594 TTTGCTCTTC
*
149676604 TAGTATGAACTTGTCTTACCTTTT
1 TAGTATGAACTCGTCTTACCTTTT
149676628 TAGTAT-AACTCGTCTTACCTT
1 TAGTATGAACTCGTCTTACCTT
149676649 ACCTGACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (24 bp):
TAGTATGAACTCGTCTTACCTTTT
Found at i:149676908 original size:55 final size:54
Alignment explanation
Indices: 149676717--149676972 Score: 215
Period size: 55 Copynumber: 4.8 Consensus size: 54
149676707 ATGTGGGTAC
* * * * * *
149676717 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGTAA
* * * *
149676766 CTTATCATTGCCTTGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-A-TGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGT-AA
* * *
149676820 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAGTAA
* * * * *
149676875 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGTAA
*
149676928 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
149676973 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 33 0.20
53 8 0.05
54 54 0.33
55 68 0.41
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGTAA
Found at i:149676917 original size:109 final size:110
Alignment explanation
Indices: 149676764--149676965 Score: 320
Period size: 109 Copynumber: 1.8 Consensus size: 110
149676754 ATCCTTTTGA
* * *
149676764 AACTTATCATTGCCTTGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-ATGAA-CTCACCA
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA--AACCTCACCA
149676827 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
64 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
* *
149676873 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
149676938 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
149676966 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
108 2 0.02
109 54 0.64
110 29 0.34
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCATTGCCTTATAGT
Found at i:149681844 original size:40 final size:40
Alignment explanation
Indices: 149681787--149681990 Score: 214
Period size: 40 Copynumber: 5.1 Consensus size: 40
149681777 TGAATGAAAC
* ** *
149681787 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
* *
149681827 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
149681867 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * * *** *
149681907 CCGGGCTAAGACCCAAAGGCATTGGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * ** *
149681947 CCGGGTTAAGACCCAAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
149681987 CCGG
1 CCGG
149681991 TTAGATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 134 0.96
41 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:149681920 original size:80 final size:79
Alignment explanation
Indices: 149681787--149681990 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 79
149681777 TGAATGAAAC
* * * *
149681787 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCTGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGCATTC
* ***
149681851 GTGCGAGTTGTTAAAT
64 GTGCAAGTTACCAAAT
* *
149681867 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTGG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTCG
149681932 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * * *
149681947 CCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
149681991 TTAGATTCCG
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 99 0.93
81 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:149683793 original size:29 final size:29
Alignment explanation
Indices: 149683761--149683833 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
149683751 TGAAAAGTAT
* * *
149683761 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
149683790 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
149683819 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
149683834 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:149691709 original size:29 final size:29
Alignment explanation
Indices: 149691677--149691749 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
149691667 TGAAAAGTAT
* * *
149691677 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
149691706 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
149691735 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
149691750 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:149698909 original size:28 final size:29
Alignment explanation
Indices: 149698877--149698975 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
149698867 ATAATAAGCC
*
149698877 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
149698905 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
149698933 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
149698962 CGCACACTTAGTGC
1 CGCACACTTAGTGC
149698976 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:149705552 original size:18 final size:18
Alignment explanation
Indices: 149705529--149705563 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
149705519 CTTAATATGG
*
149705529 ATAATTTCGAAAATTTTT
1 ATAATTTAGAAAATTTTT
*
149705547 ATAATTTATAAAATTTT
1 ATAATTTAGAAAATTTT
149705564 AAATTAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTAGAAAATTTTT
Found at i:149705650 original size:15 final size:16
Alignment explanation
Indices: 149705630--149705670 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
149705620 TTTAATTTTT
149705630 TATAAATTA-TAAAAA
1 TATAAATTACTAAAAA
*
149705645 TATAAACTACTAAAAA
1 TATAAATTACTAAAAA
*
149705661 TAAAAATTAC
1 TATAAATTAC
149705671 AATTTTACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (16 bp):
TATAAATTACTAAAAA
Found at i:149708141 original size:6 final size:6
Alignment explanation
Indices: 149708118--149708171 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
149708108 ATTATGAGAT
* * *
149708118 AATA-A AATATA AAAATA AATATA AATATA AATCTA AACTA-A AGTAT-
1 AATATA AATATA AATATA AATATA AATATA AATATA AA-TATA AATATA
149708164 AATATA AA
1 AATATA AA
149708172 GTGAAACTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
5 10 0.26
6 28 0.72
7 1 0.03
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (6 bp):
AATATA
Found at i:149710782 original size:30 final size:30
Alignment explanation
Indices: 149710748--149710807 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
149710738 ACTTAACAAG
*
149710748 CAAAT-ACTTCTAAAATAATAATAAAATTAA
1 CAAATGACTT-TAAAATAATAACAAAATTAA
*
149710778 CAAATGGCTTTAAAATAATAACAAAATTAA
1 CAAATGACTTTAAAATAATAACAAAATTAA
149710808 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGACTTTAAAATAATAACAAAATTAA
Found at i:149712609 original size:40 final size:40
Alignment explanation
Indices: 149712545--149712623 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
149712535 ATATGGTACC
*
149712545 ACTTGGTGTGTAGGGTTAGATGGGTTGATTCTATCCTCAT
1 ACTTGGTGTGTAGGGCTAGATGGGTTGATTCTATCCTCAT
* * * *
149712585 ACTTGGTTTGTAGGGCTGGGTGGGTTGATTTTATCCTCA
1 ACTTGGTGTGTAGGGCTAGATGGGTTGATTCTATCCTCA
149712624 CATGGTGCGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.15, C:0.13, G:0.32, T:0.41
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTAGATGGGTTGATTCTATCCTCAT
Found at i:149716787 original size:39 final size:39
Alignment explanation
Indices: 149716688--149716878 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
149716678 CGAATGATGT
* * * * *
149716688 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
149716728 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
149716767 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
149716806 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
149716847 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
149716879 CGTTATATCC
Statistics
Matches: 122, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:149716830 original size:79 final size:82
Alignment explanation
Indices: 149716687--149716871 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
149716677 TCGAATGATG
* * * *
149716687 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
149716751 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
149716767 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
149716829 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
149716847 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
149716872 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:149716902 original size:79 final size:79
Alignment explanation
Indices: 149716739--149716904 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
149716729 CGGACTAGGA
* * *
149716739 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
149716804 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
149716818 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
149716882 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
149716897 TCCGAAGG
1 TCCGAAGG
149716905 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:149724065 original size:38 final size:39
Alignment explanation
Indices: 149724017--149724154 Score: 145
Period size: 38 Copynumber: 3.5 Consensus size: 39
149724007 CGGACTAGGA
*
149724017 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
* * * *
149724056 -CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAG
1 TCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
* * **
149724094 TCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGCTAAG
* *
149724133 TCCCGAAGGCATTTGAGCGAGT
1 T-CCGAAGGCATTCGTGCGAGT
149724155 CGTTATATCC
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 33 0.40
39 30 0.36
40 20 0.24
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAG
Found at i:149724104 original size:77 final size:79
Alignment explanation
Indices: 149723965--149724114 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 79
149723955 TCGAATGATG
* * *
149723965 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
149724030 GTGCGAGTTAATAAA
65 GTGCGAGTTAATAAA
* **
149724045 TCCGGGCTAAG-CCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
149724107 GTGCGAGT
65 GTGCGAGT
149724115 CACTATAACC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
77 21 0.33
78 24 0.38
79 7 0.11
80 11 0.17
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATAAA
Found at i:149724127 original size:77 final size:80
Alignment explanation
Indices: 149723965--149724147 Score: 214
Period size: 77 Copynumber: 2.3 Consensus size: 80
149723955 TCGAATGATG
* * *
149723965 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
149724029 CGTGCGAGTTAATAAA
65 CGTGCGAGTCAATAAA
* **
149724045 TCCGGGCTAAG-CCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
*
149724107 GTGCGAGTCACTATAA
66 GTGCGAGTCAATA-AA
**
149724123 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
149724148 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
77 32 0.36
78 26 0.29
79 20 0.22
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:149732527 original size:17 final size:18
Alignment explanation
Indices: 149732485--149732533 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
149732475 AGTTGAAAAG
149732485 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
149732504 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
149732521 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
149732534 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:149733422 original size:40 final size:40
Alignment explanation
Indices: 149733356--149733522 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
149733346 AAATTGAATG
* * *
149733356 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
149733395 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
149733435 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
149733475 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
149733515 ATATCCGG
1 ATATCCGG
149733523 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:149740525 original size:17 final size:18
Alignment explanation
Indices: 149740483--149740531 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
149740473 AGTTGAAAAG
149740483 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
149740502 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
149740519 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
149740532 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:149741420 original size:40 final size:40
Alignment explanation
Indices: 149741354--149741520 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
149741344 AAATTGAATG
* * *
149741354 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
149741393 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
149741433 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
149741473 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
149741513 ATATCCGG
1 ATATCCGG
149741521 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:149747262 original size:29 final size:29
Alignment explanation
Indices: 149747229--149747302 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
149747219 CCTTCGAGCT
149747229 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
149747258 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
149747287 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
149747303 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:149747263 original size:58 final size:58
Alignment explanation
Indices: 149747170--149747302 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
149747160 ATACTCGATT
* * * * *
149747170 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
149747228 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
149747286 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
149747303 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:149752882 original size:71 final size:71
Alignment explanation
Indices: 149752798--149752961 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
149752788 CGATTTGTCT
149752798 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
149752863 CTTTCA
66 CTTTCA
* *
149752869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
149752934 CTTTCA
66 CTTTCA
149752940 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
149752962 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:149752999 original size:71 final size:70
Alignment explanation
Indices: 149752798--149752995 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
149752788 CGATTTGTCT
* * * * *
149752798 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
149752863 CTTTCA
65 CTTTCA
* * * *
149752869 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
149752934 CTTTCA
65 CTTTCA
* *
149752940 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
149752996 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:149762448 original size:49 final size:49
Alignment explanation
Indices: 149762395--149762622 Score: 285
Period size: 49 Copynumber: 4.6 Consensus size: 49
149762385 CTATGCATAT
*
149762395 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAG
* * ** *
149762444 TAGCCTGAACTTAGTACTACACACGTGACCAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAG
* * * ** *
149762493 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTAGGCATAG
1 TAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACGTAG
* * * *
149762544 TAGCCTACACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAG
*
149762593 TAGCCTGCACTTAGTACTACACACGTGACC
1 TAGCCTGCACTTAGTACTACACACGCGACC
149762623 TCACAATAGA
Statistics
Matches: 149, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
49 109 0.73
50 6 0.04
51 34 0.23
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAG
Found at i:149762574 original size:100 final size:98
Alignment explanation
Indices: 149762395--149762622 Score: 296
Period size: 100 Copynumber: 2.3 Consensus size: 98
149762385 CTATGCATAT
* * * * *
149762395 TAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGAACTTAGTA
1 TAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGAACATAGTA
* *
149762460 CTACACACGTGACCAACCATCTGATACACGTAG
66 CTACACACGCGACCAACCATCCGATACACGTAG
* **
149762493 TAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTAGGCATAGTAGCCT-ACACATA
1 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGA-ACATA
* ** *
149762557 GTACTACACATGCGACCAATTATCCGGTACACGTAG
63 GTACTACACACGCGACCAACCATCCGATACACGTAG
149762593 TAGCCTGCACTTAGTACTACACACGTGACC
1 TAGCCTGCACTTAGTACTACACACGTGACC
149762623 TCACAATAGA
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
98 26 0.23
99 5 0.04
100 81 0.72
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (98 bp):
TAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGAACATAGTA
CTACACACGCGACCAACCATCCGATACACGTAG
Found at i:149767795 original size:51 final size:49
Alignment explanation
Indices: 149767611--149767855 Score: 276
Period size: 49 Copynumber: 4.9 Consensus size: 49
149767601 TAGCCAAAGC
* * *
149767611 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
** * * * *
149767660 TATCTAATACACGTAGTAGCATGCACTTAGTACTACATACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
149767710 CATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
149767761 TAT-TGGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCAAT
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
149767810 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
149767856 TAACAATAGA
Statistics
Matches: 161, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 78 0.48
50 48 0.30
51 35 0.22
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:149771986 original size:39 final size:39
Alignment explanation
Indices: 149771928--149772073 Score: 197
Period size: 39 Copynumber: 3.7 Consensus size: 39
149771918 GATGTTTATT
*
149771928 CGGACTT-AGAGTCCACAGGCTATGTGCTGGAATTATATC
1 CGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTATATC
*
149771967 CGGACTT-AGAGTCCGCAGGCTATGTGATGGAATTATATC
1 CGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTATATC
* * *
149772006 TGGACTTAAGGTCCGTAGGCTATGTGCTGGAATTATAAC
1 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATC
* *
149772045 CGGACTTAAGGTCGGCAGGCTACGTGCTG
1 CGGACTTAAGGTCCGCAGGCTATGTGCTG
149772074 AAAATATGTC
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 94 0.98
40 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (39 bp):
CGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATC
Found at i:149772104 original size:78 final size:78
Alignment explanation
Indices: 149771929--149772104 Score: 196
Period size: 78 Copynumber: 2.3 Consensus size: 78
149771919 ATGTTTATTC
* * *
149771929 GGACTTAGAGTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAGAGTCCGCAGGCTATGTGA
1 GGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAGAGTCCGCAGGCTACGTGA
* * *
149771994 TGGAATTATATCT
66 TGAAAATATATCA
* ** *
149772007 GGACTTAAGGTCCGTAGGCTATGTGCTGGAATTATAACCGGACTTA-AGGTCGGCAGGCTACGTG
1 GGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAGA-GTCCGCAGGCTACGTG
* *
149772071 CTGAAAATATGTCCA
65 ATGAAAATATAT-CA
149772086 GG-C-TAAAGTCCCACAGGCT
1 GGACTTAAAGT-CCACAGGCT
149772105 TCGAGCTGGT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
77 6 0.08
78 71 0.89
79 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
GGACTTAAAGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTAGAGTCCGCAGGCTACGTGA
TGAAAATATATCA
Found at i:149780194 original size:39 final size:39
Alignment explanation
Indices: 149780140--149780292 Score: 195
Period size: 39 Copynumber: 3.9 Consensus size: 39
149780130 CAGTGATGTT
*
149780140 TATCTGGACTT-AGAGTCCGCAGGCTATGTGCTAGAATTA
1 TATCTGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
** *
149780179 TATCTGGACTT-AGAGTCTACAGGGTATGTGCTGGAATTA
1 TATCTGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
*
149780218 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
149780257 TGA-CTGGACTTAAGGTCCGCAAGCTACGTGCTGGAA
1 T-ATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
149780293 ATATGTCCAG
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
39 98 0.97
40 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:149780316 original size:78 final size:78
Alignment explanation
Indices: 149780140--149780336 Score: 195
Period size: 78 Copynumber: 2.5 Consensus size: 78
149780130 CAGTGATGTT
* * * * * *
149780140 TATCTGGACTTAGAGTCCGCAGGCTATGTGCTAGAATTATATCTGGACTTAGAGTCTACAGGGTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTTAGAGTCCACAAGCTA
* *
149780205 TGTGCTGGAATTA
66 CGTGCTGGAAATA
* *
149780218 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATGA-CTGGACTTA-AGGTCCGCAAGC
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTAT-ATCTGGACTTAGA-GTCCACAAGC
149780281 TACGTGCTGGAAATA
64 TACGTGCTGGAAATA
* * * * *
149780296 TGTCCAGG-C-TAAAGTCCCGCAAGCTACGAGCTGGTATTATA
1 TATCC-GGACTTAAAGT-CCGCAGGCTATGTGCTGGAATTATA
149780337 CCGGGTTTAA
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
77 7 0.07
78 89 0.90
79 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTTAGAGTCCACAAGCTA
CGTGCTGGAAATA
Found at i:149787001 original size:29 final size:29
Alignment explanation
Indices: 149786969--149787041 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
149786959 CTTCGAGCTC
*
149786969 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
149786998 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
149787027 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
149787042 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:149796023 original size:29 final size:29
Alignment explanation
Indices: 149795989--149796091 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
149795979 TAATCAGCCG
** *
149795989 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
149796018 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
149796047 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
149796076 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149796092 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:149804102 original size:29 final size:29
Alignment explanation
Indices: 149804068--149804170 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
149804058 TAATCAGCCG
** *
149804068 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
149804097 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
149804126 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
149804155 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149804171 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:149812220 original size:5 final size:5
Alignment explanation
Indices: 149812204--149812234 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
149812194 TCTTTCTTAC
149812204 ATTTT CATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT -ATTTT ATTTT ATTTT ATTTT ATTTT
149812235 GAGTCTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:149818796 original size:58 final size:57
Alignment explanation
Indices: 149818715--149818863 Score: 140
Period size: 57 Copynumber: 2.6 Consensus size: 57
149818705 CTCATTATAG
* * *
149818715 AAAGGATTTAGCCCGGACGGGTAATCCTGATATAATCCCTCTCGAGCATATGTTACA-
1 AAAGAATTTAGCCTGGACTGGTAATCCTGATATAATCCCTCT-GAGCATATGTTACAC
* * ** * * * *
149818772 ATTAGAATTTAGCTTGGACTGGTAATTTTAAT-TGAGTTCTTCTGAGCATATGTTACAC
1 A-AAGAATTTAGCCTGGACTGGTAATCCTGATAT-AATCCCTCTGAGCATATGTTACAC
* *
149818830 AAAGGATTTAGCCTGGACTGGTAATCCTGTTATA
1 AAAGAATTTAGCCTGGACTGGTAATCCTGATATA
149818864 TGATATGTAG
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
57 40 0.57
58 30 0.43
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (57 bp):
AAAGAATTTAGCCTGGACTGGTAATCCTGATATAATCCCTCTGAGCATATGTTACAC
Found at i:149823489 original size:51 final size:51
Alignment explanation
Indices: 149823405--149823552 Score: 226
Period size: 51 Copynumber: 2.9 Consensus size: 51
149823395 CAGATACACT
* *
149823405 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTTACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
149823456 GTGGCCTTCACATAGTACCACAATTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
149823507 GTGGCCTTCACATAGTGCCACACTTGTGTCCAAAGCTAGTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
149823553 CTAAGGTTCA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 1 0.01
51 87 0.99
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:149823613 original size:28 final size:28
Alignment explanation
Indices: 149823576--149823697 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
149823566 GGGAAATTTC
*
149823576 TCACTTAGCACAATGCTATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
149823604 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
149823632 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
149823660 TCACTT---A-TATGCCATGG-TTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
149823683 TCACTTAGCACAATG
1 TCACTTAGCACAATG
149823698 TCATATCCTA
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 11 0.13
24 8 0.10
25 1 0.01
26 1 0.01
27 3 0.04
28 60 0.71
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:149830319 original size:52 final size:52
Alignment explanation
Indices: 149830263--149830381 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
149830253 GGGAAATTTC
149830263 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* * *
149830315 TCACTTAGCACATTACCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
149830367 TCACTTAGCACAATG
1 TCACTTAGCACAATG
149830382 TCATATCCTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:149830342 original size:28 final size:27
Alignment explanation
Indices: 149830263--149830378 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
149830253 GGGAAATTTC
149830263 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
149830291 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
*
149830315 TCACTTAGCACATTACCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
*
149830343 TCACTTAG---ATGCCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
149830367 TCACTTAGCACA
1 TCACTTAGCACA
149830379 ATGTCATATC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 45 0.58
25 1 0.01
27 2 0.03
28 30 0.38
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:149832378 original size:37 final size:37
Alignment explanation
Indices: 149832327--149832413 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
149832317 TAATGAATGC
* *
149832327 ATGATTAAGCATGCCATTGAGATTGTTAAAACGAAAGG
1 ATGA-TAAGCATGCCATTGAAATTGTTAAAACAAAAGG
* *
149832365 ATGATAAGCATGCCATTGAAATTGTTAAACCAAAAGT
1 ATGATAAGCATGCCATTGAAATTGTTAAAACAAAAGG
*
149832402 ATGAAAAGCATG
1 ATGATAAGCATG
149832414 TCGTTGATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 40 0.91
38 4 0.09
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (37 bp):
ATGATAAGCATGCCATTGAAATTGTTAAAACAAAAGG
Found at i:149834119 original size:2 final size:2
Alignment explanation
Indices: 149834112--149834141 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
149834102 AGCATAGTCG
*
149834112 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149834142 TCGACCATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:149834859 original size:27 final size:27
Alignment explanation
Indices: 149834775--149834928 Score: 173
Period size: 27 Copynumber: 5.5 Consensus size: 27
149834765 GACGAGAATG
* * *
149834775 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCGAGCT-G-ATTATATA
*
149834804 GCACTAAGTGTGCGAGCTCAAATTATATA
1 GCACTAAGTGTGCGAGCT--GATTATATA
* *
149834833 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
**
149834860 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGCG-AGCTGATTATATA
* *
149834888 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCGAGCTGATTATATA
149834915 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
149834929 GATTCACTAC
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 43 0.41
28 23 0.22
29 40 0.38
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTGATTATATA
Found at i:149834896 original size:55 final size:55
Alignment explanation
Indices: 149834825--149834928 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
149834815 GCGAGCTCAA
149834825 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
149834880 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
1 ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCG
149834929 GATTCACTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (55 bp):
ATTATATAGCACTATGTGTGCGAGCTGATTTTATAGCACTAAGTGTGCGAATTTG
Found at i:149840647 original size:39 final size:40
Alignment explanation
Indices: 149840589--149840689 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
149840579 AAATTGAATG
* *
149840589 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
149840628 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
149840668 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
149840690 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:149840682 original size:40 final size:40
Alignment explanation
Indices: 149840589--149840739 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
149840579 AAATTGAATG
* * * * *
149840589 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
149840628 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
149840668 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
149840708 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
149840740 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:149840754 original size:40 final size:38
Alignment explanation
Indices: 149840585--149840756 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
149840575 TGAGAAATTG
* *
149840585 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
149840624 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
149840661 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
149840701 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
149840741 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
149840757 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:149850485 original size:40 final size:40
Alignment explanation
Indices: 149850426--149850594 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
149850416 CGGGACTTTA
* * *
149850426 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
149850466 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
149850506 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
149850546 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
149850586 CCCGGATAT
1 CCCGGATAT
149850595 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:149854229 original size:40 final size:40
Alignment explanation
Indices: 149854170--149854356 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
149854160 CATTGGAATG
* * * *
149854170 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
149854210 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
149854250 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
149854290 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
149854330 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
149854357 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:149854272 original size:80 final size:80
Alignment explanation
Indices: 149854170--149854323 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
149854160 CATTGGAATG
* * ** *
149854170 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
149854235 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
149854250 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
149854315 ATCGTGCGA
66 ATCGTGCGA
149854324 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:149854338 original size:80 final size:80
Alignment explanation
Indices: 149854174--149854356 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
149854164 GGAATGATAT
* ** * *
149854174 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
149854239 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
149854254 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
149854319 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
149854334 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
149854357 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:149854376 original size:80 final size:80
Alignment explanation
Indices: 149854174--149854391 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
149854164 GGAATGATAT
* * * * * * * *
149854174 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
149854238 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
149854254 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
149854319 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
149854334 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
149854392 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:149862251 original size:40 final size:40
Alignment explanation
Indices: 149862192--149862378 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
149862182 CATTGGAATG
* * * *
149862192 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
149862232 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
149862272 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
149862312 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
149862352 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
149862379 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Done.