Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 485 of 770
Found at i:149862294 original size:80 final size:80
Alignment explanation
Indices: 149862192--149862345 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
149862182 CATTGGAATG
* * ** *
149862192 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
149862257 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
149862272 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
149862337 ATCGTGCGA
66 ATCGTGCGA
149862346 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:149862360 original size:80 final size:80
Alignment explanation
Indices: 149862196--149862378 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
149862186 GGAATGATAT
* ** * *
149862196 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
149862261 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
149862276 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
149862341 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
149862356 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
149862379 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:149862398 original size:80 final size:80
Alignment explanation
Indices: 149862196--149862413 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
149862186 GGAATGATAT
* * * * * * * *
149862196 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
149862260 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
149862276 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
149862341 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
149862356 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
149862414 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:149870839 original size:40 final size:39
Alignment explanation
Indices: 149870711--149870853 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
149870701 AATGTTTGAG
*
149870711 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
149870750 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
149870789 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
149870829 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
149870854 TGTTTTGAAC
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:149876002 original size:14 final size:13
Alignment explanation
Indices: 149875976--149876015 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
149875966 GTTTAAAGAC
*
149875976 TTTTATTTATTAT
1 TTTTATTTTTTAT
149875989 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
149876003 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
149876016 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:149884396 original size:40 final size:40
Alignment explanation
Indices: 149884288--149884496 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
149884278 CGGGATTTAA
* * * * *
149884288 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
149884328 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149884368 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149884408 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149884448 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149884487 CCGGATATAT
1 CCGGATATAT
149884497 TTCCAATGTT
Statistics
Matches: 152, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 20 0.13
40 132 0.87
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:149892528 original size:40 final size:40
Alignment explanation
Indices: 149892420--149892629 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
149892410 CGGGATTTAA
* * * * *
149892420 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
149892460 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149892500 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149892540 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149892580 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
149892620 CCGGATATAT
1 CCGGATATAT
149892630 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:149900877 original size:30 final size:29
Alignment explanation
Indices: 149900783--149900884 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
149900773 TATAGTGAAT
* * *
149900783 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
149900812 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
149900840 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
149900870 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
149900885 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:149908855 original size:30 final size:29
Alignment explanation
Indices: 149908761--149908862 Score: 100
Period size: 28 Copynumber: 3.5 Consensus size: 29
149908751 TATAGTGAAT
* * *
149908761 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* * *
149908790 TCGTACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
149908818 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
149908848 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
149908863 CAATCTTGTC
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
28 22 0.37
29 17 0.29
30 20 0.34
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:149915609 original size:19 final size:20
Alignment explanation
Indices: 149915585--149915622 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
149915575 GGTACCACCA
149915585 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
149915604 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
149915623 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:149915958 original size:47 final size:49
Alignment explanation
Indices: 149915838--149916015 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 49
149915828 TGTAACCCGC
* * *
149915838 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
*
149915884 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
149915933 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
149915976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
149916016 TCAACCATCC
Statistics
Matches: 113, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 32 0.28
46 33 0.29
47 31 0.27
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:149915960 original size:92 final size:93
Alignment explanation
Indices: 149915846--149916015 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
149915836 GCCCATAAGT
* *
149915846 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
149915910 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
149915938 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
149916003 CGAGTTCGGATGC
66 CGAGTTCGGATGC
149916016 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 38 0.52
93 35 0.48
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:149918424 original size:15 final size:15
Alignment explanation
Indices: 149918377--149918424 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
149918367 AGAAAACCGA
*
149918377 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAAG
* *
149918392 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
149918407 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
149918422 ATA
1 ATA
149918425 CGATACTATG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:149921527 original size:46 final size:46
Alignment explanation
Indices: 149921353--149921527 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
149921343 TGTAACCTAC
* *
149921353 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGC-ATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACAATT-GCAT
* * * *
149921399 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-AATTGCAT
* *
149921449 -C-TCA-CGAACT-AGACTCAACTCAACGAGTTCGGACAATTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACAATTGCAT
*
149921491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
149921528 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 5 0.05
46 77 0.73
47 5 0.05
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACAATTGCAT
Found at i:149926191 original size:29 final size:29
Alignment explanation
Indices: 149926100--149926202 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
149926090 TACTCGATCA
** *
149926100 CGCACACTTAGTGCCATGTGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ACATTTCAAGCT
* * * * *
149926129 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
149926158 TGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAGCT
*
149926187 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149926203 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAGCT
Found at i:149934113 original size:29 final size:28
Alignment explanation
Indices: 149934081--149934154 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
149934071 GATTTAAGCC
*
149934081 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTCCAAACT
* * * *
149934110 CGCACACTTAGCGCCATACATTTCAAGCT
1 CGCACAC-TAGTGCCATACAGTCCAAACT
149934139 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
149934155 ATCTCGTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTCCAAACT
Found at i:149935380 original size:25 final size:24
Alignment explanation
Indices: 149935346--149935404 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 24
149935336 GGAGGAAGTG
149935346 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAG-TTAT
149935371 CAAAAGGGC-TTTGCCCCAGTTAT
1 CAAAAGGGCTTTTGCCCCAGTTAT
*
149935394 TAAAAGAGGCT
1 CAAAAG-GGCT
149935405 AGGCCTCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 9 0.29
24 13 0.42
25 9 0.29
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTTGCCCCAGTTAT
Found at i:149935388 original size:24 final size:23
Alignment explanation
Indices: 149935346--149935418 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 23
149935336 GGAGGAAGTG
149935346 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGC-TTTGCCCCAG-TTAT
149935371 CAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAGGGCTTTGCCCCAGTTAT
* **
149935394 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTTGCC-CCAGTTAT
149935419 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 9 0.21
24 17 0.40
25 17 0.40
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTAT
Found at i:149935642 original size:31 final size:31
Alignment explanation
Indices: 149935604--149935687 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
149935594 TTGTTACAGT
*
149935604 AAAGGCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
149935635 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
149935666 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
149935688 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 5 0.10
31 45 0.90
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:149939308 original size:2 final size:2
Alignment explanation
Indices: 149939296--149939342 Score: 85
Period size: 2 Copynumber: 23.0 Consensus size: 2
149939286 TCCAGATGTG
149939296 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149939339 AT AT
1 AT AT
149939343 GCATATACGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 42 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:149942240 original size:56 final size:56
Alignment explanation
Indices: 149942177--149942311 Score: 225
Period size: 56 Copynumber: 2.4 Consensus size: 56
149942167 CCATGGCATC
149942177 GATATATGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT
1 GATATATGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT
* * *
149942233 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCT
1 GATATATGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT
* *
149942289 AATTTATGTGTGTGAGTAAGACC
1 GATATATGTGTGTGAGTAAGACC
149942312 CTATCTAGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (56 bp):
GATATATGTGTGTGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCT
Found at i:149952884 original size:40 final size:40
Alignment explanation
Indices: 149952839--149953006 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
149952829 CGGAATATAA
149952839 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
149952879 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
149952919 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
149952959 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
149952999 CCGGATAT
1 CCGGATAT
149953007 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:149959014 original size:17 final size:17
Alignment explanation
Indices: 149958992--149959037 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
149958982 ATCAAAATAA
149958992 AATTTCTAATTACAATG
1 AATTTCTAATTACAATG
*
149959009 AATTTCTAATTAGAATG
1 AATTTCTAATTACAATG
*
149959026 AAATTCTAATTA
1 AATTTCTAATTA
149959038 ATTTAAACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (17 bp):
AATTTCTAATTACAATG
Found at i:149959114 original size:18 final size:20
Alignment explanation
Indices: 149959093--149959137 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
149959083 CTAAGAAATA
*
149959093 TAAAATTCCTAAACA-A-CT
1 TAAAATTCCTAAAAATATCT
*
149959111 TAAAATACCTAAAAATATCT
1 TAAAATTCCTAAAAATATCT
149959131 TAAAATT
1 TAAAATT
149959138 TGGAATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 13 0.59
19 1 0.05
20 8 0.36
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATTCCTAAAAATATCT
Found at i:149960722 original size:21 final size:21
Alignment explanation
Indices: 149960696--149960736 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
149960686 CAATGCAAAC
149960696 AAGGGC-ACACGCCCCGTGTGG
1 AAGGGCGACACG-CCCGTGTGG
*
149960717 AAGGGCGACATGCCCGTGTG
1 AAGGGCGACACGCCCGTGTG
149960737 TCCTCTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.20, C:0.29, G:0.39, T:0.12
Consensus pattern (21 bp):
AAGGGCGACACGCCCGTGTGG
Found at i:149961913 original size:48 final size:48
Alignment explanation
Indices: 149961800--149962080 Score: 269
Period size: 48 Copynumber: 5.8 Consensus size: 48
149961790 TAAGATCCCA
** * * * *
149961800 ATGCCATGTCCCAGGCATGGTCTTACACTGGCTCTCATAT-ATGGGTGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA--AG-GCCG
* * * *
149961850 TTGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCAAGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCG
** * *
149961898 ATGCCATGTCCCAAACATGGTCTTACACTAGCTTTCATATAAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCG
** * *
149961946 ATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCG
* * * *
149961994 ATGCCATGTCCCAGACATGGTCTTACA-TTGACTCACATATCAAAGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAG-CTCACATATCAAGGCCG
* * * * *
149962042 ATGCCATTTCCTAGACATGGTCTCACACTAGCTCTCATA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
149962081 ACCTTAGTAT
Statistics
Matches: 190, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
47 2 0.01
48 151 0.79
49 3 0.02
50 33 0.17
51 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:149961982 original size:96 final size:97
Alignment explanation
Indices: 149961800--149962080 Score: 320
Period size: 96 Copynumber: 2.9 Consensus size: 97
149961790 TAAGATCCCA
* * ** * *
149961800 ATGCCATGTCCCAGGCATGGTCTTACACTGGCTCTCATATATGGGTGTCGTTGCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA-GAATGCCGATGCCATGTTCCAAA
* *
149961865 CATGGTCTTACACTAGCTCACATGTCAAGGCTG
65 CATGGTCTTACACTAGCTCACATATCAAGGCCG
* * *
149961898 ATGCCATGTCCCAAACATGGTCTTACACTAGCTTTCATATA-AATGCCGATGCCATGTTTCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAGAATGCCGATGCCATGTTCCAAAC
* *
149961962 ATGGTCTTACACTGGCTCACATATCGAGGCCG
66 ATGGTCTTACACTAGCTCACATATCAAGGCCG
* * *
149961994 ATGCCATGTCCCAGACATGGTCTTACA-TTGACTCACATATCA-AA-GTCGATGCCAT-TTCCTA
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATAT-AGAATGCCGATGCCATGTTCC-A
* * *
149962055 GACATGGTCTCACACTAGCTCTCATA
63 AACATGGTCTTACACTAGCTCACATA
149962081 ACCTTAGTAT
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
95 5 0.03
96 112 0.71
97 3 0.02
98 37 0.24
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (97 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAGAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCACATATCAAGGCCG
Found at i:149962062 original size:144 final size:146
Alignment explanation
Indices: 149961815--149962080 Score: 351
Period size: 144 Copynumber: 1.8 Consensus size: 146
149961805 ATGTCCCAGG
* * * * * *
149961815 CATGGTCTTACACTGGCTCTCATATATGGGTGTCGTTGCCATGTTCCAAACATGGTCTTACACTA
1 CATGGTCTTACACTGGCTCACATATACGAGTGCCGATGCCATGTCCCAAACATGGTCTTACACTA
* * *
149961880 GCTCACATGTCAAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTTTCATATAAATGCC
66 GCTCACATATCAAGGCTGATGCCATGTCCCAAACATGGTCTCACACTAGCTCTCATATAAATGCC
149961945 GATGCCATGTTTCAAA
131 GATGCCATGTTTCAAA
* *
149961961 CATGGTCTTACACTGGCTCACATAT-CGAG-GCCGATGCCATGTCCCAGACATGGTCTTACA-TT
1 CATGGTCTTACACTGGCTCACATATACGAGTGCCGATGCCATGTCCCAAACATGGTCTTACACTA
* * * *
149962023 GACTCACATATCAAAG-TCGATGCCATTTCCTAGACATGGTCTCACACTAGCTCTCATA
66 G-CTCACATATCAAGGCT-GATGCCATGTCCCAAACATGGTCTCACACTAGCTCTCATA
149962081 ACCTTAGTAT
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
143 3 0.03
144 74 0.72
145 2 0.02
146 24 0.23
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (146 bp):
CATGGTCTTACACTGGCTCACATATACGAGTGCCGATGCCATGTCCCAAACATGGTCTTACACTA
GCTCACATATCAAGGCTGATGCCATGTCCCAAACATGGTCTCACACTAGCTCTCATATAAATGCC
GATGCCATGTTTCAAA
Found at i:149967039 original size:13 final size:13
Alignment explanation
Indices: 149967021--149967045 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
149967011 CTTTATTTTA
149967021 TTATTTATCATCC
1 TTATTTATCATCC
149967034 TTATTTATCATC
1 TTATTTATCATC
149967046 TTTCCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTTATCATCC
Found at i:149968786 original size:35 final size:35
Alignment explanation
Indices: 149968740--149968807 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
149968730 TTTAAAAATG
149968740 TAAGACAAGAATGTGCCAAAAGGAAGAGAGAGCAT
1 TAAGACAAGAATGTGCCAAAAGGAAGAGAGAGCAT
149968775 TAAGACAAGAATGTGCCAAAAGGAAGAGAGAGC
1 TAAGACAAGAATGTGCCAAAAGGAAGAGAGAGC
149968808 TTACTCTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.49, C:0.12, G:0.29, T:0.10
Consensus pattern (35 bp):
TAAGACAAGAATGTGCCAAAAGGAAGAGAGAGCAT
Found at i:149969948 original size:21 final size:21
Alignment explanation
Indices: 149969922--149969964 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
149969912 TTAGAATCCT
149969922 ATGAGTATCAATACTTTTGAA
1 ATGAGTATCAATACTTTTGAA
* *
149969943 ATGAGTATCGATATTTTTGAA
1 ATGAGTATCAATACTTTTGAA
149969964 A
1 A
149969965 AAGTATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (21 bp):
ATGAGTATCAATACTTTTGAA
Found at i:149969969 original size:20 final size:21
Alignment explanation
Indices: 149969925--149969975 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
149969915 GAATCCTATG
* *
149969925 AGTATCAATACTTTTGAAATG
1 AGTATCGATACTTTTGAAATA
*
149969946 AGTATCGATATTTTTGAAA-A
1 AGTATCGATACTTTTGAAATA
*
149969966 AGTATTGATA
1 AGTATCGATA
149969976 AAATAGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (21 bp):
AGTATCGATACTTTTGAAATA
Found at i:149972137 original size:40 final size:39
Alignment explanation
Indices: 149972093--149972274 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
149972083 ATTCAAAACA
* * ** * *
149972093 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
149972133 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
149972173 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
149972212 CCTTCGGGCTTAGCCCGGATATCACAATTCACACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
149972251 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
149972275 CTCGAACATT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:149972204 original size:39 final size:39
Alignment explanation
Indices: 149972123--149972275 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
149972113 TATGGTAACC
* *
149972123 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
149972163 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
149972202 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
149972241 CACACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
149972276 TCGAACATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:149975943 original size:27 final size:27
Alignment explanation
Indices: 149975913--149975972 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
149975903 CAAATTGTAA
149975913 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
****
149975940 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
149975967 AATTAC
1 AATTAC
149975973 TGTTTTACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTATAG
Found at i:149975977 original size:27 final size:27
Alignment explanation
Indices: 149975924--149976027 Score: 154
Period size: 27 Copynumber: 3.9 Consensus size: 27
149975914 ATTACCAAAG
* *
149975924 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
149975951 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
149975978 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
149976005 TACCCTCAATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
149976028 AAAATACCAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:149976035 original size:27 final size:27
Alignment explanation
Indices: 149976005--149976278 Score: 184
Period size: 27 Copynumber: 10.2 Consensus size: 27
149975995 ATTACTGTTT
* *
149976005 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCAATTTATAAAATTACCAAAA
* *** *
149976032 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACCAAAA
* *
149976059 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCAATTTA-TAAAATTACCAAAA
* * * * *
149976086 TA-CCTTAGTCTATAAAATTGCTAAAA
1 TACCCTCAATTTATAAAATTACCAAAA
*** * *
149976112 TA-CCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCAATTTATAAAATTACCAAAA
*
149976138 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACCAAAA
* *
149976165 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTATAAAATTACCAAAA
** * * *
149976192 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCAATTTATAAAATTACCAAAA
*
149976219 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACCAAAA
* *
149976246 TACCC-CTAATTTACAAAGTTA-CAGAAA
1 TACCCTC-AATTTATAAAATTACCA-AAA
149976273 TACCCT
1 TACCCT
149976279 TGACTTTCTA
Statistics
Matches: 199, Mismatches: 38, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
26 45 0.23
27 153 0.77
28 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCAATTTATAAAATTACCAAAA
Found at i:149976045 original size:54 final size:54
Alignment explanation
Indices: 149975911--149976054 Score: 144
Period size: 54 Copynumber: 2.7 Consensus size: 54
149975901 CTCAAATTGT
* * * * * * *
149975911 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACTAAAATACCATTGATTTACAGAATTACCGTTTTACCCTCAATTTAC
* **** * *
149975965 AGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTAC
1 AAAATTACTAAAATACCATTGATTTACAGAATTACCGTTTTACCCTCAATTTAC
* *
149976019 AAAATTACTAAAATACCATTGGTTTACAAAATTACC
1 AAAATTACTAAAATACCATTGATTTACAGAATTACC
149976055 AAAATACCCT
Statistics
Matches: 70, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCATTGATTTACAGAATTACCGTTTTACCCTCAATTTAC
Found at i:149976063 original size:54 final size:54
Alignment explanation
Indices: 149976005--149976334 Score: 236
Period size: 54 Copynumber: 6.1 Consensus size: 54
149975995 ATTACTGTTT
** * *
149976005 TACCCTCAATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
* ** * * * *
149976059 TACCCTCGATCAGTAAAATTACCAAAATACC-TTAGTCTATAAAATTGCTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
*** * * * * **
149976112 TA-CCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
* * * *** *
149976165 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
** * *
149976219 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTA-CAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCA-AAA
* * * *** * **
149976273 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCC-TCAATTTGT-AAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
149976329 TACCCT
1 TACCCT
149976335 TGGTTTGTAG
Statistics
Matches: 214, Mismatches: 54, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
52 23 0.11
53 38 0.18
54 111 0.52
55 8 0.04
56 34 0.16
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCATTAGTTTACAAAATTACCAAAA
Found at i:149976274 original size:81 final size:81
Alignment explanation
Indices: 149976007--149976276 Score: 339
Period size: 81 Copynumber: 3.3 Consensus size: 81
149975997 TACTGTTTTA
** * * **
149976007 CCCTCAATTTACAAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTCGATCAG
1 CCCT-AATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCGAAATACCCTCAATTTG
149976072 TAAAATTACCAAAATA-
65 TAAAATTACCAAAATAC
* * * * *
149976088 CCTTAGTCTATAAAATTGCTAAAATACC-TTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
1 CCCTAATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
149976152 AAAATTACCAAAATAC
66 AAAATTACCAAAATAC
* ** * * *
149976168 CCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 CCCTAATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
149976233 AAAATTACCAAAATAC
66 AAAATTACCAAAATAC
*
149976249 CCCTAATTTACAAAGTTAC-AGAAATACC
1 CCCTAATTTACAAAATTACTA-AAATACC
149976277 CTTGACTTTC
Statistics
Matches: 164, Mismatches: 22, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
79 45 0.27
80 44 0.27
81 75 0.46
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
CCCTAATTTACAAAATTACTAAAATACCATTGGTTTGTAAAATTACCGAAATACCCTCAATTTGT
AAAATTACCAAAATAC
Found at i:149976328 original size:27 final size:27
Alignment explanation
Indices: 149976289--149976340 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
149976279 TGACTTTCTA
149976289 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
149976316 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
149976341 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:149976425 original size:27 final size:27
Alignment explanation
Indices: 149976395--149976453 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
149976385 CCCCTATTAG
149976395 GTAAAAAGACCGCAAAGCCCCTGTAGC
1 GTAAAAAGACCGCAAAGCCCCTGTAGC
** * *
149976422 GTAAAGTGACCGTAAAGCCCCTGTAGG
1 GTAAAAAGACCGCAAAGCCCCTGTAGC
149976449 GTAAA
1 GTAAA
149976454 GTGACCGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.24, G:0.25, T:0.15
Consensus pattern (27 bp):
GTAAAAAGACCGCAAAGCCCCTGTAGC
Found at i:149976454 original size:27 final size:27
Alignment explanation
Indices: 149976402--149976485 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
149976392 TAGGTAAAAA
* *
149976402 GACCGCAAAGCCCCTGTAGCGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
149976429 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
149976456 GACCGTAATA-CCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCCTGTAGGGTAAAGT
149976483 GAC
1 GAC
149976486 GAATAAGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:149977399 original size:24 final size:25
Alignment explanation
Indices: 149977293--149977386 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
149977283 AGGAAGTGCT
*
149977293 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
149977318 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
149977343 AAAAGGACTTTGCACCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
149977367 AAAACGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
149977387 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 17 0.27
25 45 0.73
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:149977681 original size:31 final size:31
Alignment explanation
Indices: 149977606--149977682 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
149977596 TTTACAGTAG
** *
149977606 AGGCTTCGGCCCAAAGATATGATTTATGATA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
149977637 AGGCTTCGGCCCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCCAGTGATATGATTTATGAAA
149977668 AGGCTTCGGCCCAGT
1 AGGCTTCGGCCCAGT
149977683 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTGATATGATTTATGAAA
Found at i:149989586 original size:29 final size:28
Alignment explanation
Indices: 149989552--149989654 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
149989542 TACTCAATCA
*
149989552 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
149989581 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
149989610 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
149989639 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
149989655 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:149990175 original size:23 final size:24
Alignment explanation
Indices: 149990148--149990195 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
149990138 TGTTGAGACC
149990148 ATTTATGCAC-TTATTACCACACA
1 ATTTATGCACATTATTACCACACA
149990171 ATTTATGCACATTATTACCACACA
1 ATTTATGCACATTATTACCACACA
149990195 A
1 A
149990196 AAACAGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.33
Consensus pattern (24 bp):
ATTTATGCACATTATTACCACACA
Found at i:149997660 original size:28 final size:28
Alignment explanation
Indices: 149997595--149997695 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
149997585 ATAGTGAATC
*
149997595 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
149997624 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
149997652 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
149997682 CGCACACTTAGTGC
1 CGCACACTTAGTGC
149997696 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:149997744 original size:29 final size:29
Alignment explanation
Indices: 149997683--149997813 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
149997673 TTTTAAACCC
*** *
149997683 GCACACTTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
149997711 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
149997741 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
149997770 GCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
149997799 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
149997814 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:150005573 original size:28 final size:28
Alignment explanation
Indices: 150005510--150005608 Score: 110
Period size: 28 Copynumber: 3.4 Consensus size: 28
150005500 ATAGTGAATC
*
150005510 CACACTTAGTGCTATATGTATTC-AACTCG
1 CACACTTAGTGCTATA--TAATCAAACTCG
150005539 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * *
150005567 CACACTTAGTGCTGTACAATTTTAAACCCG
1 CACACTTAGTGCTATATAA--TCAAACTCG
150005597 CACACTTAGTGC
1 CACACTTAGTGC
150005609 CATACCCTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.37
29 16 0.26
30 19 0.31
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:150005657 original size:29 final size:29
Alignment explanation
Indices: 150005625--150005688 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
150005615 CTTCGAGCTC
* *
150005625 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCACTGCCATATATTTCCAGCAT
** *
150005654 GCACACTTACTGCCATATATTTTCAGCAT
1 GCACACCCACTGCCATATATTTCCAGCAT
150005683 GCACAC
1 GCACAC
150005689 TTAGTGCCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.27
Consensus pattern (29 bp):
GCACACCCACTGCCATATATTTCCAGCAT
Found at i:150005689 original size:29 final size:29
Alignment explanation
Indices: 150005635--150005697 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
150005625 GCACACCCAG
*
150005635 TGCCGTATATTTCCAGCATGCACACTTAC
1 TGCCATATATTTCCAGCATGCACACTTAC
* *
150005664 TGCCATATATTTTCAGCATGCACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAC
150005693 TGCCA
1 TGCCA
150005698 ATCTCGTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (29 bp):
TGCCATATATTTCCAGCATGCACACTTAC
Found at i:150014948 original size:16 final size:16
Alignment explanation
Indices: 150014920--150014969 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
150014910 TCTATATTTT
*
150014920 TCTATCATTTTCAGAA
1 TCTATCATTTTCACAA
150014936 TCTA-CATTCTTCACAA
1 TCTATCATT-TTCACAA
*
150014952 TCTAT-AGTTTCAC-A
1 TCTATCATTTTCACAA
150014966 TCTA
1 TCTA
150014970 AAGATTACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 5 0.17
15 9 0.30
16 16 0.53
ACGTcount: A:0.30, C:0.24, G:0.04, T:0.42
Consensus pattern (16 bp):
TCTATCATTTTCACAA
Found at i:150016953 original size:40 final size:40
Alignment explanation
Indices: 150016907--150017120 Score: 331
Period size: 40 Copynumber: 5.3 Consensus size: 40
150016897 ACTAAGATCT
150016907 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGAT-CC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAG-TCCC
* *
150016947 GAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTCTC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
*
150016987 GAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
* *
150017027 GAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
* * *
150017067 GAAGGCATTTGTGCTAGTGACTATGTCCGCGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
*
150017107 GAAGGCATTCGTGC
1 GAAGGCATTTGTGC
150017121 GAGTTGCTAT
Statistics
Matches: 163, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 162 0.99
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
Found at i:150017031 original size:80 final size:80
Alignment explanation
Indices: 150016898--150017150 Score: 336
Period size: 80 Copynumber: 3.2 Consensus size: 80
150016888 GATAACCGGA
150016898 CTAAGATCT-GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGAT-CCGAAGGCATTTGTGC
1 CTAAG-TCTCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGC
*
150016961 TAGTGATTATAT-TCGGG
64 TAGTGACTATATCT-GGG
*
150016978 CTAAGTCTCGAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTA
1 CTAAGTCTCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
150017043 GTGACTATATCTGGG
66 GTGACTATATCTGGG
* * * * * *
150017058 CTAAGTCCCGAAGGCATTTGTGCTAGTGACTATGTCCGCGCTAAGTCCCGAAGGCATTCGTGCGA
1 CTAAGTCTCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
*
150017123 GTTG-CTATATC-CGG
66 G-TGACTATATCTGGG
* *
150017137 CTAAATTTCGAAGG
1 CTAAGTCTCGAAGG
150017151 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
79 17 0.11
80 136 0.87
81 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (80 bp):
CTAAGTCTCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
GTGACTATATCTGGG
Found at i:150024996 original size:40 final size:40
Alignment explanation
Indices: 150024901--150025148 Score: 437
Period size: 40 Copynumber: 6.2 Consensus size: 40
150024891 ACTAAGATCT
150024901 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGAT-CC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAG-TCCC
150024941 -AAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
150024980 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
150025020 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
*
150025060 GAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
* * *
150025100 GAAGGCATTTGTGCTAGTGACTATGTCCAGGCTAAGTCCC
1 GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
150025140 GAAGGCATT
1 GAAGGCATT
150025149 CATGCGAGTT
Statistics
Matches: 203, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
38 1 0.00
39 37 0.18
40 165 0.81
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
GAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
Found at i:150028689 original size:30 final size:30
Alignment explanation
Indices: 150028653--150028710 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
150028643 CAGCTTTTAG
*
150028653 GAGCCACTCAGGCTGAACACACGCCCATAT
1 GAGCCACACAGGCTGAACACACGCCCATAT
* * *
150028683 GAGCCACACGGGCTGGACACATGCCCAT
1 GAGCCACACAGGCTGAACACACGCCCAT
150028711 GTGCCAGCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.36, G:0.24, T:0.12
Consensus pattern (30 bp):
GAGCCACACAGGCTGAACACACGCCCATAT
Found at i:150030469 original size:47 final size:47
Alignment explanation
Indices: 150030350--150030519 Score: 232
Period size: 47 Copynumber: 3.6 Consensus size: 47
150030340 TACGTGTAAT
* * * * *
150030350 GTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCAT-TAAC
* *
150030398 GTGGTGCTAAGTGGACATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
**
150030445 GTGGTGCTAAGTGGATATTTCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
* *
150030492 ATGGTACTAAGTGGATATACCACGGTTA
1 GTGGTGCTAAGTGGATATACCACGGTTA
150030520 AACATGTAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 71 0.66
48 37 0.34
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCACGGTTACATATATTGATTCATTAAC
Found at i:150030553 original size:38 final size:38
Alignment explanation
Indices: 150030488--150030564 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
150030478 ATTGATTCAT
150030488 TAACATGGTACTAAGTGGATATACCACGGTTAAACATG
1 TAACATGGTACTAAGTGGATATACCACGGTTAAACATG
* * * *
150030526 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACATGGTACTAAGTGGATATACCACGGTTAAACATG
150030564 T
1 T
150030565 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (38 bp):
TAACATGGTACTAAGTGGATATACCACGGTTAAACATG
Found at i:150033324 original size:40 final size:39
Alignment explanation
Indices: 150033279--150033407 Score: 168
Period size: 40 Copynumber: 3.3 Consensus size: 39
150033269 CGGAATATAA
150033279 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
150033319 CCGGATAGAATGACTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
* * *
150033358 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
150033398 CCGGATATAA
1 CCGGATATAA
150033408 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 33 0.45
40 41 0.55
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:150033422 original size:40 final size:39
Alignment explanation
Indices: 150033294--150033444 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 39
150033284 TATAACCATG
* *
150033294 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGA-C
1 TGCACAATTGCCTTCGGGTCTTAGCCCGGATATAAT-ACC
** *
150033333 TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACT
1 TGCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATACC
* *
150033373 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 TGCACAATTGCCTTCGGGTCTTAGCCCGGATATAA-TACC
* * *
150033413 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 TGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
150033445 CATTCAATTT
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 46 0.49
40 48 0.51
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (39 bp):
TGCACAATTGCCTTCGGGTCTTAGCCCGGATATAATACC
Found at i:150033435 original size:79 final size:79
Alignment explanation
Indices: 150033279--150033444 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
150033269 CGGAATATAA
* *
150033279 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTGCACGAATGC
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACAGCACGAATGC
150033344 CTTCGGGTCTTAGC
66 CTTCGGGTCTTAGC
* * * ** *
150033358 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCA-TAAT
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAA-TGACAGCACGAA-
*
150033421 TGTCTTCGGG-CTTAGC
63 TGCCTTCGGGTCTTAGC
150033437 CCGGATAT
1 CCGGATAT
150033445 CATTCAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 60 0.80
80 15 0.20
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACAGCACGAATGC
CTTCGGGTCTTAGC
Found at i:150035840 original size:27 final size:26
Alignment explanation
Indices: 150035793--150035843 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
150035783 ATCATACATC
*
150035793 ACATAGGGTAAAACAAACATTTTACA
1 ACATAGGGCAAAACAAACATTTTACA
**
150035819 ACATAGGGGCAAAACAGTCATTTTA
1 ACATA-GGGCAAAACAAACATTTTA
150035844 TCAATTAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.24
Consensus pattern (26 bp):
ACATAGGGCAAAACAAACATTTTACA
Found at i:150039545 original size:48 final size:46
Alignment explanation
Indices: 150039485--150039598 Score: 124
Period size: 46 Copynumber: 2.4 Consensus size: 46
150039475 TGCCATGTCC
* * *
150039485 CAGACAGGTCTTACACTGGCTTGCATAT-CTCGAGGCCGATGCATATC-
1 CAGACATGTCTTACACTAGC-T-CATATAAT-GAGGCCGATGCATATCT
* * *
150039532 CTAGACATGTCTTACACTAGCTCTTATAATGTGGCCGATGCATGTCT
1 C-AGACATGTCTTACACTAGCTCATATAATGAGGCCGATGCATATCT
150039579 CAGACATGTCTTACACTAGC
1 CAGACATGTCTTACACTAGC
150039599 GCACATATCA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
46 37 0.64
47 4 0.07
48 17 0.29
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (46 bp):
CAGACATGTCTTACACTAGCTCATATAATGAGGCCGATGCATATCT
Found at i:150050257 original size:20 final size:20
Alignment explanation
Indices: 150050234--150050271 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
150050224 CACATCCAAA
*
150050234 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
150050254 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
150050272 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:150052859 original size:48 final size:48
Alignment explanation
Indices: 150052805--150052977 Score: 199
Period size: 48 Copynumber: 3.6 Consensus size: 48
150052795 ATCGTAATGA
*
150052805 CATGTAAGACCATAGCTGAGACATGGCATTGGCATC-AGTATATGATCC
1 CATGTAAGACCATAGCTGGGACATGGCATTGGCATCGA-TATATGATCC
* *
150052853 CATGTAACACCAT-GTCTGGGACATGGCATTGGCATCGATATGTGATCC
1 CATGTAAGACCATAG-CTGGGACATGGCATTGGCATCGATATATGATCC
* * * * * **
150052901 CATGTAAGACCATATCTGGGATATGGCGTTGGCATCGATATGTAATTT
1 CATGTAAGACCATAGCTGGGACATGGCATTGGCATCGATATATGATCC
*
150052949 CGTGTAAGACCAT-GTCTGGGACATGGCAT
1 CATGTAAGACCATAG-CTGGGACATGGCAT
150052978 CGATATGAGA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
47 1 0.01
48 105 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
CATGTAAGACCATAGCTGGGACATGGCATTGGCATCGATATATGATCC
Found at i:150055348 original size:23 final size:23
Alignment explanation
Indices: 150055318--150055364 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
150055308 TGTGATTTTG
150055318 TGAAGTTTTGTAAAAGTGTTTCA
1 TGAAGTTTTGTAAAAGTGTTTCA
150055341 TGAAGTTTTGTAAAAGTGTTTCA
1 TGAAGTTTTGTAAAAGTGTTTCA
150055364 T
1 T
150055365 TATAGTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (23 bp):
TGAAGTTTTGTAAAAGTGTTTCA
Found at i:150055546 original size:40 final size:40
Alignment explanation
Indices: 150055491--150055577 Score: 165
Period size: 40 Copynumber: 2.2 Consensus size: 40
150055481 ATTCGATATA
150055491 AGAAAATTTATTTTTATTATATTTTATGGTCTACAATTTC
1 AGAAAATTTATTTTTATTATATTTTATGGTCTACAATTTC
150055531 AGAAAATTTATTTTTATTATATTTTATGGTCTACAATTTC
1 AGAAAATTTATTTTTATTATATTTTATGGTCTACAATTTC
*
150055571 ACAAAAT
1 AGAAAAT
150055578 GATTTCGTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.36, C:0.08, G:0.07, T:0.49
Consensus pattern (40 bp):
AGAAAATTTATTTTTATTATATTTTATGGTCTACAATTTC
Found at i:150059256 original size:54 final size:54
Alignment explanation
Indices: 150059170--150059277 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
150059160 GCTAACATGG
* *
150059170 GAATTGGTGAGAAGCTGGCTTTAAATAGAGTGAACCAGATGAGTTGGTGAGGGA
1 GAATTAGTGAGAAGCTGGCTTTAAATAAAGTGAACCAGATGAGTTGGTGAGGGA
150059224 GAATTAGTGAGAAGCTGGCTTTAAATAAAGTGAACCAGATGAGTTGGTGAGGGA
1 GAATTAGTGAGAAGCTGGCTTTAAATAAAGTGAACCAGATGAGTTGGTGAGGGA
150059278 AAAAGTGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.35, T:0.24
Consensus pattern (54 bp):
GAATTAGTGAGAAGCTGGCTTTAAATAAAGTGAACCAGATGAGTTGGTGAGGGA
Found at i:150060382 original size:27 final size:27
Alignment explanation
Indices: 150060331--150060382 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
150060321 CAACTGTTAC
*
150060331 TGATTTTGAGAATGGGCTAGGCCTAAT
1 TGATTTTGAGAATGGGCTAGACCTAAT
150060358 TGATTTTGATG-A-GGGCTGAGACCTA
1 TGATTTTGA-GAATGGGCT-AGACCTA
150060383 GTACAATCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 5 0.23
27 16 0.73
28 1 0.05
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.33
Consensus pattern (27 bp):
TGATTTTGAGAATGGGCTAGACCTAAT
Found at i:150063073 original size:10 final size:10
Alignment explanation
Indices: 150063058--150063098 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
150063048 CTAATGTTAT
150063058 AAAAGAAAAA
1 AAAAGAAAAA
150063068 AAAAGAAAAA
1 AAAAGAAAAA
150063078 AAGAAGAAAACA
1 AA-AAGAAAA-A
*
150063090 GAAAGAAAA
1 AAAAGAAAA
150063099 GAATAATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:150063081 original size:18 final size:19
Alignment explanation
Indices: 150063058--150063136 Score: 74
Period size: 18 Copynumber: 4.1 Consensus size: 19
150063048 CTAATGTTAT
150063058 AAAAGAA-AAAAAAAGAAA
1 AAAAGAAGAAAAAAAGAAA
*
150063076 AAAAGAAG-AAAACAGAAA
1 AAAAGAAGAAAAAAAGAAA
*
150063094 GAAAAGAATAATAATAAAGAAA
1 -AAAAGAAGAA-AA-AAAGAAA
150063116 AAGAAGAAGACAAAAAA-AAA
1 AA-AAGAAGA-AAAAAAGAAA
150063136 A
1 A
150063137 GTACAAATAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
18 16 0.32
19 7 0.14
20 5 0.10
21 7 0.14
22 14 0.28
23 1 0.02
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.04
Consensus pattern (19 bp):
AAAAGAAGAAAAAAAGAAA
Found at i:150063098 original size:19 final size:19
Alignment explanation
Indices: 150063058--150063137 Score: 65
Period size: 19 Copynumber: 4.3 Consensus size: 19
150063048 CTAATGTTAT
* *
150063058 AAAAGAAAAAAAAAGAAA-
1 AAAAGAAGAAAACAGAAAG
150063076 AAAAGAAGAAAACAGAAAG
1 AAAAGAAGAAAACAGAAAG
* * *
150063095 AAAAGAATAATA-ATAAAG
1 AAAAGAAGAAAACAGAAAG
* * *
150063113 AAAAAGAAGAAGACAAAAAA
1 -AAAAGAAGAAAACAGAAAG
150063133 AAAAG
1 AAAAG
150063138 TACAAATAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
18 21 0.42
19 25 0.50
20 4 0.08
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.04
Consensus pattern (19 bp):
AAAAGAAGAAAACAGAAAG
Found at i:150063924 original size:43 final size:42
Alignment explanation
Indices: 150063844--150063925 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
150063834 GATAATCCTA
***
150063844 GAAAAAAAATTTAAAAAAAGGAGAAGATAATTTTGGGTTGTT
1 GAAAAAAAATTTAAAAAAAGGAGAAGATAAACATGGGTTGTT
* *
150063886 GAAAAAATAATTTTAAAAGAGGAGAAGATAAACATGGGTT
1 GAAAAAA-AATTTAAAAAAAGGAGAAGATAAACATGGGTT
150063926 ATTGGATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 7 0.21
43 27 0.79
ACGTcount: A:0.51, C:0.01, G:0.22, T:0.26
Consensus pattern (42 bp):
GAAAAAAAATTTAAAAAAAGGAGAAGATAAACATGGGTTGTT
Found at i:150069394 original size:40 final size:40
Alignment explanation
Indices: 150069336--150069543 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
150069326 TGAATGATAC
*
150069336 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* *
150069376 CCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
** *
150069416 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
150069456 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * * *
150069496 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGCGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
150069536 CC-GGCTAA
1 CCGGGCTAA
150069544 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 135 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:150072526 original size:20 final size:20
Alignment explanation
Indices: 150072497--150072541 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
150072487 AGCACATGTA
*
150072497 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAATTT
*
150072517 TTCATCAAATTTTACAATTT
1 TTCATAAAATTTTACAATTT
150072537 TTCAT
1 TTCAT
150072542 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTACAATTT
Found at i:150082509 original size:36 final size:36
Alignment explanation
Indices: 150082453--150082524 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
150082443 GCCACGGAAG
150082453 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
1 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
* *
150082489 AAAGTTCACC-GATTTGGCAGTAAAGGCAAACTAACT
1 AAAGTTCACCAG-TTTAGCAGTAAAGGAAAACTAACT
150082525 CTATGGTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (36 bp):
AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
Found at i:150085083 original size:40 final size:41
Alignment explanation
Indices: 150084988--150085175 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 41
150084978 GAATGGTGTT
* * * * *
150084988 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAAAC
* *
150085029 CGGGTCAATTCCCGAAGGCATTTGTGCT-AGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAAAC
*
150085069 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAAC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAAAC
* * * *
150085109 CGGGTTAAGTCCCGAAGGCATTCGTG-TGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAAAC
* * *
150085149 CGGGCTAATTCCCGAAGGCAATTGTGC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC
150085176 GAATCACTAT
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
40 104 0.81
41 24 0.19
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAAAC
Found at i:150085141 original size:80 final size:80
Alignment explanation
Indices: 150084988--150085205 Score: 242
Period size: 80 Copynumber: 2.7 Consensus size: 80
150084978 GAATGGTGTT
* * * * * *
150084988 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCG
150085053 TGCTAGTTACCAAAAC
65 TGCTAGTTACCAAAAC
* * *
150085069 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCGT
* *
150085134 G-TGAGTTACTAAATC
66 GCT-AGTTACCAAAAC
* * * * * *
150085149 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAG
150085206 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 88 0.76
81 25 0.22
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTCGT
GCTAGTTACCAAAAC
Found at i:150085192 original size:40 final size:39
Alignment explanation
Indices: 150084988--150085219 Score: 191
Period size: 40 Copynumber: 5.8 Consensus size: 39
150084978 GAATGGTGTT
** * *
150084988 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA-C
* * * *
150085029 CGGG-TCAATTCCCGAAGGCATTTGTGCTAGTTACCAAAAC
1 CGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAAC
* * *
150085069 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAAC
* *
150085109 CGGGTTAAGTCCCGAAGGC-ATTCGTGTGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA-C
* * *
150085149 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AAC
* * *
150085189 CGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
150085220 CGCTATATCC
Statistics
Matches: 163, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 8 0.05
40 122 0.75
41 33 0.20
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAC
Found at i:150085226 original size:40 final size:40
Alignment explanation
Indices: 150085148--150085231 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
150085138 GTTACTAAAT
* * *
150085148 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
150085188 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
150085228 CCGG
1 CCGG
150085232 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.19
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:150093111 original size:40 final size:39
Alignment explanation
Indices: 150093062--150093269 Score: 206
Period size: 39 Copynumber: 5.3 Consensus size: 39
150093052 TGTCCGGGCT
* * * * *
150093062 AAGT-CCGAAGGCTTTTGTGCTAAGTGACTAATCCGGGTC
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACCAAACCGGGTC
* * *
150093101 AATTCCCGAAGGCATTTGTGCGAGTTACCAAAACGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAACCGGGTC
*
150093140 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAACCGGGTC
* *
150093179 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-C
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAA-CCGGGTC
* * * * *
150093218 TAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-C
1 -AAGTCCCGAAGGCATTTGTGCGAGTTACCA-AACCGGGTC
150093258 AATGTCCCGAAG
1 AA-GTCCCGAAG
150093270 ACAATCGAGC
Statistics
Matches: 145, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 84 0.58
40 59 0.41
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACCAAACCGGGTC
Found at i:150093149 original size:39 final size:39
Alignment explanation
Indices: 150093055--150093241 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
150093045 CGAATGGTGT
* * * * * *
150093055 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* *
150093094 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
*
150093133 ACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
150093172 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* * *
150093211 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
150093242 ATCACTATAA
Statistics
Matches: 128, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:150093190 original size:78 final size:79
Alignment explanation
Indices: 150093056--150093283 Score: 237
Period size: 78 Copynumber: 2.9 Consensus size: 79
150093046 GAATGGTGTC
* * * * * *
150093056 CGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAATCCGGGTCAATTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAACCGGGTCAAGTCCCGAAGGCATTCGT
150093120 GCGAGTTACCAAA-A
65 GCGAGTTACCAAATA
* * *
150093134 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAACCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAACCGGGTCAAGTCCCGAAGGCATTCGTG
* *
150093199 CGAGTTACTAAATC
66 CGAGTTACCAAATA
* * * * * * *
150093213 CGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATCG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCA-AACCGGGTCAA-GTCCCGAAGGCATTCG
*
150093277 AGCGAGT
64 TGCGAGT
150093284 CGCTATATCC
Statistics
Matches: 125, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 51 0.41
79 47 0.38
80 27 0.22
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAACCGGGTCAAGTCCCGAAGGCATTCGTG
CGAGTTACCAAATA
Found at i:150093290 original size:40 final size:41
Alignment explanation
Indices: 150093104--150093295 Score: 155
Period size: 39 Copynumber: 4.8 Consensus size: 41
150093094 CCGGGTCAAT
* * * * * *
150093104 TCCCGAAGGCATTTGTGCGAGTTACCA-AAACGGGTTAA-G
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
* * * * *
150093143 TCCCGAAGGCATTTGTGCGAGTTACCA-AACCGGGTTAA-G
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
* *
150093182 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCTAATG
* *
150093222 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGC-AATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
* * * *
150093262 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
150093296 TTAAATTCCG
Statistics
Matches: 135, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 68 0.50
40 65 0.48
41 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTAATG
Found at i:150095717 original size:24 final size:24
Alignment explanation
Indices: 150095685--150095744 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
150095675 AACCCATATC
150095685 CATCGTCGAAACAGGGTTTCAGAG
1 CATCGTCGAAACAGGGTTTCAGAG
*
150095709 CATCGTCGAAACAGGGTTTCGGAG
1 CATCGTCGAAACAGGGTTTCAGAG
*
150095733 CATTGTCGAAAC
1 CATCGTCGAAAC
150095745 TTTCAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (24 bp):
CATCGTCGAAACAGGGTTTCAGAG
Found at i:150098917 original size:25 final size:25
Alignment explanation
Indices: 150098888--150098935 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
150098878 TTATAATATG
* * *
150098888 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
150098913 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
150098936 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:150099004 original size:20 final size:20
Alignment explanation
Indices: 150098979--150099037 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
150098969 TAAATGTGGT
150098979 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
150098999 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
*
150099019 ACGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
150099038 GGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:150099142 original size:24 final size:24
Alignment explanation
Indices: 150099086--150099166 Score: 121
Period size: 24 Copynumber: 3.4 Consensus size: 24
150099076 TGAGGAAGTG
150099086 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
150099109 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
150099133 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
150099157 AAAAGAGGCT
1 AAAAG-GGCT
150099167 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 23 0.43
24 26 0.49
25 4 0.08
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:150099171 original size:24 final size:24
Alignment explanation
Indices: 150099086--150099180 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
150099076 TGAGGAAGTG
*
150099086 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTAGGCCCCAGTTATT
*
150099109 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
150099133 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
*
150099157 AAAAGAGGC-TAGGCCTCTAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
150099181 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
23 22 0.35
24 31 0.49
25 10 0.16
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:150099407 original size:31 final size:31
Alignment explanation
Indices: 150099372--150099435 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
150099362 CGTTTACAGT
150099372 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
150099403 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
150099434 AA
1 AA
150099436 TATGAACATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:150099440 original size:38 final size:38
Alignment explanation
Indices: 150099389--150099501 Score: 147
Period size: 44 Copynumber: 2.8 Consensus size: 38
150099379 TCGGCCCAGT
150099389 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
150099427 AATATGAAATATGAACATGAAAAGGCTTCGGCCC-GTATTATGA
1 AATATG-AA-AT----ATGAAAAGGCTTCGGCCCAGTATTATGA
*
150099470 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
150099502 GCATGATTGA
Statistics
Matches: 66, Mismatches: 1, Indels: 15
0.80 0.01 0.18
Matches are distributed among these distances:
37 7 0.11
38 16 0.24
39 4 0.06
40 2 0.03
41 2 0.03
42 2 0.03
43 15 0.23
44 18 0.27
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:150099478 original size:43 final size:44
Alignment explanation
Indices: 150099389--150099484 Score: 167
Period size: 43 Copynumber: 2.2 Consensus size: 44
150099379 TCGGCCCAGT
*
150099389 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AATATG-AACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
150099434 AATATGAACATGAAAAGGCTTCGGCCC-GTATTATGAAATATGA
1 AATATGAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
150099477 AATATGAA
1 AATATGAA
150099485 AAGGGCTACG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 24 0.48
44 20 0.40
45 6 0.12
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (44 bp):
AATATGAACATGAAAAGGCTTCGGCCCAGTATTATGAAATATGA
Found at i:150102625 original size:11 final size:11
Alignment explanation
Indices: 150102598--150102640 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
150102588 TGACCTTTCC
150102598 AAGGTATGGG-
1 AAGGTATGGGA
*
150102608 TAGGTATGGGA
1 AAGGTATGGGA
*
150102619 AAGGTATGGGC
1 AAGGTATGGGA
150102630 AAGGTATGGGA
1 AAGGTATGGGA
150102641 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:150102637 original size:22 final size:21
Alignment explanation
Indices: 150102598--150102640 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
150102588 TGACCTTTCC
*
150102598 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
150102619 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
150102641 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:150107282 original size:11 final size:11
Alignment explanation
Indices: 150107255--150107297 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
150107245 TGACCTTTCC
150107255 AAGGTATGGG-
1 AAGGTATGGGA
*
150107265 TAGGTATGGGA
1 AAGGTATGGGA
*
150107276 AAGGTATGGGC
1 AAGGTATGGGA
150107287 AAGGTATGGGA
1 AAGGTATGGGA
150107298 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:150107294 original size:22 final size:21
Alignment explanation
Indices: 150107255--150107297 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
150107245 TGACCTTTCC
*
150107255 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
150107276 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
150107298 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:150113417 original size:20 final size:19
Alignment explanation
Indices: 150113384--150113423 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
150113374 AGATTAAACT
*
150113384 TTAATTAATTATAATTAAC
1 TTAACTAATTATAATTAAC
150113403 TTAACTAATTAATAATTAAC
1 TTAACTAATT-ATAATTAAC
150113423 T
1 T
150113424 AATGTTAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAACTAATTATAATTAAC
Found at i:150114507 original size:5 final size:5
Alignment explanation
Indices: 150114497--150114522 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
150114487 TGTGTGAAAT
150114497 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
150114523 GAACACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:150116183 original size:26 final size:26
Alignment explanation
Indices: 150116148--150116199 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
150116138 AAAAATGCAG
* *
150116148 TTTTTGTTTTTGTGAAGTGATTCCAT
1 TTTTTATTTTTGTAAAGTGATTCCAT
150116174 TTTTTATTTTTGTAAAGTGATTCCAT
1 TTTTTATTTTTGTAAAGTGATTCCAT
150116200 CTCCCTTGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.08, G:0.15, T:0.58
Consensus pattern (26 bp):
TTTTTATTTTTGTAAAGTGATTCCAT
Found at i:150124706 original size:15 final size:14
Alignment explanation
Indices: 150124686--150124720 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
150124676 ACTATTTTAA
*
150124686 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
150124700 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
150124715 GGTTTA
1 GGTTTA
150124721 AAGGTGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:150124783 original size:21 final size:20
Alignment explanation
Indices: 150124729--150124784 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
150124719 TAAAGGTGAT
*
150124729 TTAAGGGTTG-GGGTTTAAGG
1 TTAAGGG-TGAGGGGTTAAGG
* *
150124749 TTTAGGTGTTAGGGGTTAAGGG
1 TTAAGG-GTGAGGGGTTAA-GG
150124771 TTAAGGGTGAGGGG
1 TTAAGGGTGAGGGG
150124785 GTTTATAGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
20 6 0.21
21 15 0.54
22 7 0.25
ACGTcount: A:0.20, C:0.00, G:0.48, T:0.32
Consensus pattern (20 bp):
TTAAGGGTGAGGGGTTAAGG
Found at i:150124967 original size:14 final size:14
Alignment explanation
Indices: 150124948--150124992 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
150124938 TTAATTATCA
150124948 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
150124962 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* *
150124976 ATATGGTTTAGGGT
1 TTATAGTTTAGGGT
150124990 TTA
1 TTA
150124993 AAGTGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:150125034 original size:15 final size:15
Alignment explanation
Indices: 150125016--150125058 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
150125006 ATTATTTTAA
150125016 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
150125031 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
150125045 GATTTATGG-TTATG
1 GGTTTATGGATTATG
150125059 TAAGAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:150125036 original size:22 final size:22
Alignment explanation
Indices: 150125011--150125053 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
150125001 GAGTTATTAT
*
150125011 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
150125033 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
150125054 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:150125657 original size:7 final size:7
Alignment explanation
Indices: 150125638--150125760 Score: 183
Period size: 7 Copynumber: 17.0 Consensus size: 7
150125628 AATCTTCAAA
150125638 AAAAATTT
1 AAAAA-TT
150125646 AAAAATTT
1 AAAAA-TT
150125654 AAAAATT
1 AAAAATT
150125661 AAAAATT
1 AAAAATT
150125668 AAAAATT
1 AAAAATT
150125675 AAAAATT
1 AAAAATT
150125682 AAAAATT
1 AAAAATT
150125689 AAAAATT
1 AAAAATT
150125696 AAAAATT
1 AAAAATT
150125703 AAAAATT
1 AAAAATT
150125710 AAAAATT
1 AAAAATT
*
150125717 AAAACTT
1 AAAAATT
150125724 AAAAATT
1 AAAAATT
*
150125731 AGAAAATA
1 A-AAAATT
*
150125739 AAAAATA
1 AAAAATT
150125746 AAAAACTT
1 AAAAA-TT
150125754 AAAAATT
1 AAAAATT
150125761 TAATATTTAA
Statistics
Matches: 109, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
7 84 0.77
8 25 0.23
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:150127079 original size:21 final size:20
Alignment explanation
Indices: 150127046--150127084 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
150127036 TAAAAGAATA
*
150127046 ATAATTATATAAAACAAAAAT
1 ATAATGATATAAAA-AAAAAT
*
150127067 ATAATGATTTAAAAAAAA
1 ATAATGATATAAAAAAAA
150127085 TAATCTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (20 bp):
ATAATGATATAAAAAAAAAT
Found at i:150127751 original size:44 final size:43
Alignment explanation
Indices: 150127700--150127782 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
150127690 CATATTGATA
*
150127700 TCTTCGATCTGCTCTCCGCCGAACACAGAGACGCCAAATCTGCT
1 TCTTCGATCTGCTCTCCGAC-AACACAGAGACGCCAAATCTGCT
* * * * *
150127744 TCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCGACAACACAGAGACGCCAAATC
150127783 ATCTTAGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCCGACAACACAGAGACGCCAAATCTGCT
Found at i:150128226 original size:206 final size:206
Alignment explanation
Indices: 150127748--150128293 Score: 792
Period size: 206 Copynumber: 2.6 Consensus size: 206
150127738 TCTGCTTCTT
* *
150127748 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAGCGTAAACACGCG
1 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTG
* * *
150127813 AAAACCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGA
66 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
* * ** * * **
150127878 TCTTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTTTGCCCTTCGTCGAATATGGA
131 TC-TGCTTCAGTGAAAACATATGAAGGCCAGATCTGCAATGTGTCTGCCCTTCACCGAATATGGA
*
150127943 GACGCCAAACTT
195 GACGCCAAACTC
* * *
150127955 CAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCGTAAGCACGTG
1 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTG
* *
150128020 AAAGCCAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGG
66 AAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGG
*
150128084 ATCTGCTTCAGT-ATAAACATATGAAGGCCAGATCTGCAATGTGTCTG-CTTTCCACCGAATATG
130 ATCTGCTTCAGTGA-AAACATATGAAGGCCAGATCTGCAATGTGTCTGCCCTT-CACCGAATATG
150128147 GAGACGCCAAACTC
193 GAGACGCCAAACTC
* * *
150128161 CGATTTGTTCTTTGACAATATAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTG
1 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTG
** * *
150128226 AAAGCTGAATCAGCTATGTCTTCGGTTTGTTCCTTGTAAGTACAAGGATGCCAAACCATCTTGGA
66 AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
150128291 TCT
131 TCT
150128294 TACTTCCGCC
Statistics
Matches: 304, Mismatches: 31, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
205 5 0.02
206 177 0.58
207 121 0.40
208 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAACACGTG
AAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGA
TCTGCTTCAGTGAAAACATATGAAGGCCAGATCTGCAATGTGTCTGCCCTTCACCGAATATGGAG
ACGCCAAACTC
Found at i:150136406 original size:14 final size:16
Alignment explanation
Indices: 150136371--150136407 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
150136361 TAAACGATGC
150136371 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
150136386 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
150136401 -ATGCAAA
1 GATGCAAA
150136408 AAGATATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:150136450 original size:14 final size:14
Alignment explanation
Indices: 150136427--150136456 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
150136417 ATTCTGGTTC
150136427 AACTTCATTTAGAA
1 AACTTCATTTAGAA
*
150136441 AACTTTATTTAGAA
1 AACTTCATTTAGAA
150136455 AA
1 AA
150136457 AGAATATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (14 bp):
AACTTCATTTAGAA
Found at i:150152054 original size:40 final size:38
Alignment explanation
Indices: 150152010--150152202 Score: 215
Period size: 39 Copynumber: 4.9 Consensus size: 38
150152000 CGTTCAAAAC
* * * *
150152010 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
150152050 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
150152089 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 -GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * *
150152128 GCCTTCGGGCTTAGCCCAGATATCACAATTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA-AT
* *
150152167 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
150152203 TTCATACACA
Statistics
Matches: 136, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 32 0.24
39 65 0.48
40 39 0.29
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:150152161 original size:77 final size:78
Alignment explanation
Indices: 150152009--150152204 Score: 243
Period size: 77 Copynumber: 2.5 Consensus size: 78
150151999 TCGTTCAAAA
* * * * * * *
150152009 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCAC-ATTGCCTTCGGGACTTAACCCAGATAT
150152074 CACAACTCGCACAAT
64 CACAACTCGCACAAT
*
150152089 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGG-CTTAGCCCAGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCAGATATCA
* *
150152153 CAATTCGCACATT
66 CAACTCGCACAAT
* *
150152166 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
150152205 CATACACATC
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
77 59 0.57
78 13 0.13
79 21 0.20
80 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (78 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCAGATATCA
CAACTCGCACAAT
Found at i:150152203 original size:39 final size:39
Alignment explanation
Indices: 150152049--150152204 Score: 226
Period size: 39 Copynumber: 4.0 Consensus size: 39
150152039 CCCGCACAAA
* * *
150152049 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
150152089 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACA-T
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
*
150152127 TGCCTTCGGGCTTAGCCCAGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
150152166 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
150152205 CATACACATC
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
38 33 0.31
39 63 0.60
40 9 0.09
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:150154223 original size:28 final size:28
Alignment explanation
Indices: 150154162--150154259 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
150154152 TCACAAATTG
** * *
150154162 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
150154191 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
150154219 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
150154247 GCACTAAGTGTGC
1 GCACTAAGTGTGC
150154260 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:150161883 original size:28 final size:28
Alignment explanation
Indices: 150161822--150161919 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
150161812 TCACAAATTG
** * *
150161822 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
150161851 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
150161879 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
150161907 GCACTAAGTGTGC
1 GCACTAAGTGTGC
150161920 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:150166690 original size:40 final size:39
Alignment explanation
Indices: 150166646--150166814 Score: 148
Period size: 40 Copynumber: 4.3 Consensus size: 39
150166636 TCGTTGAAAC
*
150166646 GCCTTTGGGATATAGCCCGGTTATAGTAACTCGCACAAAT
1 GCCTTCGGGAT-TAGCCCGGTTATAGTAACTCGCACAAAT
* * * *
150166686 GCCTTCAGGACTTAACCCGGATT-TAGTAACTCGTACCAAT
1 GCCTTCGGGA-TTAGCCCGG-TTATAGTAACTCGCACAAAT
* *
150166726 GCCTTCGGGCTTAGCCCGG-AATTAGTAACTCGCACAAAT
1 GCCTTCGGGATTAGCCCGGTTA-TAGTAACTCGCACAAAT
* * * *
150166765 GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA--TTAGCCCGGTTATAGTAAC-TCGCACAAAT
150166805 GCCTTCGGGA
1 GCCTTCGGGA
150166815 CCTAGCCCAG
Statistics
Matches: 104, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
38 2 0.02
39 29 0.28
40 58 0.56
41 15 0.14
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGATTAGCCCGGTTATAGTAACTCGCACAAAT
Found at i:150166755 original size:39 final size:39
Alignment explanation
Indices: 150166669--150166812 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 39
150166659 AGCCCGGTTA
*
150166669 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGAAT
* * * *
150166709 TAGTAACTCGTACCAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAAT
**
150166748 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGGAAT
* *
150166787 ATAGTCACTTAGCACAAA-GCCTTCGG
1 -TAGTAAC-TCGCACAAATGCCTTCGG
150166813 GACCTAGCCC
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 38 0.42
40 44 0.49
41 8 0.09
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAAT
Found at i:150166809 original size:79 final size:79
Alignment explanation
Indices: 150166669--150166822 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
150166659 AGCCCGGTTA
* *
150166669 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGTACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATATAGTAACTC-TACCAAAGCCTTCGG
*
150166734 G-CTTAGCCCGGAAT
65 GACCTAGCCCGGAAT
** *
150166748 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACT-TAGCACAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGGATATAGTAACTCTA-C-CAAAGCCTTC
150166811 GGGACCTAGCCC
63 GGGACCTAGCCC
150166823 AGACATCATT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
77 2 0.03
78 4 0.06
79 52 0.80
80 7 0.11
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGGATATAGTAACTCTACCAAAGCCTTCGGG
ACCTAGCCCGGAAT
Found at i:150170891 original size:40 final size:40
Alignment explanation
Indices: 150170842--150171049 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
150170832 TCTTCGGAAT
* *
150170842 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
150170881 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
150170921 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
150170961 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
150171001 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
150171041 TTAGCCCGG
1 TTAGCCCGG
150171050 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Done.