Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 486 of 770
Found at i:150176959 original size:40 final size:40
Alignment explanation
Indices: 150176908--150177135 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
150176898 GCCACTAGCT
* *
150176908 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
150176948 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
150176987 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
150177027 CGAATGCCTGCGGGACATAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
150177067 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
150177107 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
150177136 CATCCGAACA
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
39 38 0.23
40 125 0.76
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:150179192 original size:25 final size:24
Alignment explanation
Indices: 150179163--150179215 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
150179153 TGATACCATA
150179163 GCTCTTTATGA-GTGTCCTGATATAG
1 GCTCTTTATGAGGT-TCCTGATAT-G
* *
150179188 GCTCTTTGTGAGGTTCTTGATATG
1 GCTCTTTATGAGGTTCCTGATATG
150179212 GCTC
1 GCTC
150179216 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 18 0.72
26 2 0.08
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGGTTCCTGATATG
Found at i:150184461 original size:30 final size:30
Alignment explanation
Indices: 150184425--150184525 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
150184415 GACAAGATTG
* * *
150184425 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
150184455 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
150184483 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
150184512 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
150184526 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:150184537 original size:29 final size:28
Alignment explanation
Indices: 150184454--150184529 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
150184444 AAAATTGTAC
* *
150184454 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
150184482 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
150184511 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
150184530 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:150192338 original size:30 final size:30
Alignment explanation
Indices: 150192302--150192402 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
150192292 GACAAGATTG
* * *
150192302 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
150192332 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
150192360 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
150192389 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
150192403 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:150192414 original size:29 final size:28
Alignment explanation
Indices: 150192331--150192406 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
150192321 AAAATTGTAC
* *
150192331 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
150192359 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
150192388 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
150192407 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:150196332 original size:46 final size:45
Alignment explanation
Indices: 150196274--150196444 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
150196264 TGAGCATCCG
* *
150196274 AACTTGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCA
* * *
150196320 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TCCA
***
150196367 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCA
*
150196413 AGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
150196445 GGCGGGTTAC
Statistics
Matches: 104, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 56 0.54
47 28 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTCCA
Found at i:150196426 original size:93 final size:93
Alignment explanation
Indices: 150196267--150196437 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
150196257 GGATGGTTGA
* * ****
150196267 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCAAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCAAACTCGTTGAGT
150196332 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
150196360 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACCCCCAAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCAAACTCGTTGAGT
150196425 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
150196438 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACCCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:150202147 original size:40 final size:40
Alignment explanation
Indices: 150202042--150202164 Score: 139
Period size: 40 Copynumber: 3.1 Consensus size: 40
150202032 GAATACAACT
*
150202042 GGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGCCC
1 GGATAGAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCCC
* *
150202082 GGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATAGAACCACTAGCACGAATGCCTTCGGGTCTTAGCCC
* *
150202122 GGAT-GTAGCCACTAGCAC-AATTGCCTTC--GTCTTAACCC
1 GGATAG-AACCACTAGCACGAA-TGCCTTCGGGTCTTAGCCC
150202160 GGATA
1 GGATA
150202165 CAATTTCCAG
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
38 13 0.18
39 4 0.05
40 56 0.77
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
GGATAGAACCACTAGCACGAATGCCTTCGGGTCTTAGCCC
Found at i:150205449 original size:28 final size:28
Alignment explanation
Indices: 150205416--150205484 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
150205406 GCGTAGATCA
*
150205416 CGAAATTACCCCTAAAGAGCACAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
150205444 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
150205472 CGATA-TACCCCTA
1 CGAAATTACCCCTA
150205485 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:150215909 original size:29 final size:29
Alignment explanation
Indices: 150215868--150216196 Score: 280
Period size: 29 Copynumber: 11.6 Consensus size: 29
150215858 TAATATAACA
* *
150215868 ACAAATGCATCCTTTTAACAGAGATAGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * *
150215897 ATAAAGGCGTCCTTTTAACAGTGATAGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * *
150215926 ATAAAGGCATCCTTTTAACAAAGATA-CC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * * *
150215954 AAAAAGGCGTCC-TTTAACAAAGATCGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* ** * *
150215982 ATAAAGAATTCCTTTTAACGGAGATCGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * **
150216011 ACAAAGACTTCTTTTTAATGGAGATCA-CC
1 ACAAAGGCTTCCTTTTAACAGAGAT-AGCC
** * *
150216040 ACAAAAACTTCATTTTAACAGAGATCGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * * * *
150216069 GCAAAGGC-TCCCTTGAATAGAGATAGCT
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
150216097 ACAAAGGCTTCC-TTT--CAGAGATAGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
* * *
150216123 ACAAAGGCTTCCTTTTAACAGAGTTTGCT
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
150216152 ACAAAGGCTTCC-TTTAACAGAGATAGCC
1 ACAAAGGCTTCCTTTTAACAGAGATAGCC
150216180 ACAAAGGC-TCACTTTTA
1 ACAAAGGCTTC-CTTTTA
150216197 TAGAAATGGC
Statistics
Matches: 245, Mismatches: 45, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
26 21 0.09
27 17 0.07
28 67 0.27
29 140 0.57
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (29 bp):
ACAAAGGCTTCCTTTTAACAGAGATAGCC
Found at i:150215995 original size:56 final size:58
Alignment explanation
Indices: 150215876--150216000 Score: 166
Period size: 56 Copynumber: 2.2 Consensus size: 58
150215866 CAACAAATGC
* * ** *
150215876 ATCCTTTTAACAGAGATAGCCATAAAGGCGTCCTTTTAACAGTGATAGCCATAAAGGC
1 ATCCTTTTAACAAAGATAGCCAAAAAGGCGTCCTTTTAACAAAGATAGCCATAAAGGA
*
150215934 ATCCTTTTAACAAAGATA-CCAAAAAGGCGTCC-TTTAACAAAGATCGCCATAAA-GA
1 ATCCTTTTAACAAAGATAGCCAAAAAGGCGTCCTTTTAACAAAGATAGCCATAAAGGA
150215989 ATTCCTTTTAAC
1 A-TCCTTTTAAC
150216001 GGAGATCGCC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
55 2 0.03
56 28 0.47
57 13 0.22
58 17 0.28
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (58 bp):
ATCCTTTTAACAAAGATAGCCAAAAAGGCGTCCTTTTAACAAAGATAGCCATAAAGGA
Found at i:150216186 original size:57 final size:56
Alignment explanation
Indices: 150215881--150216196 Score: 255
Period size: 57 Copynumber: 5.6 Consensus size: 56
150215871 AATGCATCCT
* * * *
150215881 TTTAACAGAGATAGCCATAAAGGCGTCCTTTTAACAGTGATAGCCATAAAGGCATCC
1 TTTAACAGAGATAGCCACAAAGGC-TCCTTTTAACAGAGATAGCCACAAAGGCTTCC
* * * * * **
150215938 TTTTAACAAAGATA-CCAAAAAGGCGTCC-TTTAACAAAGATCGCCATAAAGAATTCC
1 -TTTAACAGAGATAGCCACAAAGGC-TCCTTTTAACAGAGATAGCCACAAAGGCTTCC
* * * * ** ** *
150215994 TTTTAACGGAGATCGCCACAAAGACTTCTTTTTAATGGAGATCA-CCACAAAAACTTCAT
1 -TTTAACAGAGATAGCCACAAAGGC-TCCTTTTAACAGAGAT-AGCCACAAAGGCTTC-C
* * * * * *
150216053 TTTAACAGAGATCGCCGCAAAGGCTCCCTTGAATAGAGATAGCTACAAAGGCTTCC
1 TTTAACAGAGATAGCCACAAAGGCTCCTTTTAACAGAGATAGCCACAAAGGCTTCC
* * *
150216109 TTT--CAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGTTTGCTACAAAGGCTTCC
1 TTTAACAGAGATAGCCACAAAGGC-TCCTTTTAACAGAGATAGCCACAAAGGCTTCC
150216164 TTTAACAGAGATAGCCACAAAGGCTCACTTTTA
1 TTTAACAGAGATAGCCACAAAGGCTC-CTTTTA
150216197 TAGAAATGGC
Statistics
Matches: 208, Mismatches: 41, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
54 17 0.08
55 30 0.14
56 39 0.19
57 70 0.34
58 52 0.25
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (56 bp):
TTTAACAGAGATAGCCACAAAGGCTCCTTTTAACAGAGATAGCCACAAAGGCTTCC
Found at i:150233613 original size:50 final size:50
Alignment explanation
Indices: 150233502--150233772 Score: 219
Period size: 50 Copynumber: 5.4 Consensus size: 50
150233492 CTGGTACGCA
* * * ** * **
150233502 TAGTAGCCTCCACTTGGTACTACACATGCAACC-AACAATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* *
150233551 TAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* * ** * *
150233601 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-GTTGTCAGGTAGCA--
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT-A-ATA-CACG
* * ** * *
150233651 TAGTAGCATGCACTTAGTACTACACAAGCAACCTAACTATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
* * *
150233701 CAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTAA-ACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC-TAATACACG
*
150233753 TAGTAGCCTGCACATAGTAC
1 TAGTAGCCTGCACTTAGTAC
150233773 GTGTTCTCAC
Statistics
Matches: 175, Mismatches: 37, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
48 2 0.01
49 33 0.19
50 105 0.60
51 4 0.02
52 29 0.17
53 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
Found at i:150233675 original size:100 final size:100
Alignment explanation
Indices: 150233551--150233731 Score: 290
Period size: 100 Copynumber: 1.8 Consensus size: 100
150233541 CCGATACACG
* * ** * *
150233551 TAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
1 TAGTAGCATGCACTTAGTACTACACAAGCAACCTAACCATCTAATACACGCAGTAGCCTACACTT
150233616 AGTACTACACACGTGATCGAAGTTGTCAGGTAGCA
66 AGTACTACACACGTGATCGAAGTTGTCAGGTAGCA
* *
150233651 TAGTAGCATGCACTTAGTACTACACAAGCAACCTAACTATCTAGTACACGCAGTAGCCTACACTT
1 TAGTAGCATGCACTTAGTACTACACAAGCAACCTAACCATCTAATACACGCAGTAGCCTACACTT
150233716 AGTACTACACACGTGA
66 AGTACTACACACGTGA
150233732 CCTAAAACCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 73 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (100 bp):
TAGTAGCATGCACTTAGTACTACACAAGCAACCTAACCATCTAATACACGCAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTGTCAGGTAGCA
Found at i:150233732 original size:150 final size:151
Alignment explanation
Indices: 150233494--150233772 Score: 386
Period size: 150 Copynumber: 1.8 Consensus size: 151
150233484 GAAGCTATCT
* * * * * *
150233494 GGTACGCATAGTAGCCTCCACTTGGTACTACACATGCAACCAACAATCCGATACACGTAGTAGCT
1 GGTACGCATAGTAGCATCCACTTAGTACTACACAAGCAACCAACAATCAGATACACGCAGTAGCC
* * * *
150233559 TGCACTTAGTACTACACATGTGACCT-AACCATC-TAATACACGTAGTAGCCTGCACTTAGTACT
66 TACACTTAGTACTACACACGTGACCTAAACCATCTTAA-ACACATAGTAGCCTGCACATAGTACT
150233622 ACACACGTGATCGAAGTTGTCA
130 ACACACGTGATCGAAGTTGTCA
* *
150233644 GGTA-GCATAGTAGCATGCACTTAGTACTACACAAGCAACCTAACTATCTAG-TACACGCAGTAG
1 GGTACGCATAGTAGCATCCACTTAGTACTACACAAGCAACC-AACAATC-AGATACACGCAGTAG
150233707 CCTACACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGTA
64 CCTACACTTAGTACTACACACGTGACCT-AAACCATCTTAAACACATAGTAGCCTGCACATAGTA
150233772 C
128 C
150233773 GTGTTCTCAC
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
149 32 0.29
150 46 0.41
151 1 0.01
152 30 0.27
153 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (151 bp):
GGTACGCATAGTAGCATCCACTTAGTACTACACAAGCAACCAACAATCAGATACACGCAGTAGCC
TACACTTAGTACTACACACGTGACCTAAACCATCTTAAACACATAGTAGCCTGCACATAGTACTA
CACACGTGATCGAAGTTGTCA
Found at i:150237569 original size:40 final size:40
Alignment explanation
Indices: 150237514--150237723 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
150237504 AACATTGGAA
150237514 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150237554 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150237594 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
150237634 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
150237673 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
150237714 CTATATCCGG
1 ATATATCCGG
150237724 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:150245703 original size:40 final size:40
Alignment explanation
Indices: 150245648--150245857 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
150245638 AACATTGGAA
150245648 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150245688 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150245728 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
150245768 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
150245807 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
150245848 CTATATCCGG
1 ATATATCCGG
150245858 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:150249021 original size:29 final size:29
Alignment explanation
Indices: 150248988--150249118 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
150248978 ATGGTGAGAT
*
150248988 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
150249017 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
150249046 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
150249075 T-ACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
150249103 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
150249119 AGCTCGAAGG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 24 0.27
29 65 0.73
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:150249117 original size:57 final size:58
Alignment explanation
Indices: 150248989--150249109 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
150248979 TGGTGAGATT
* * * ** *
150248989 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
* *
150249047 GGCACTAAGTGTGCATGCTGGAAAAATAT-ACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
150249104 GGCACT
1 GGCACT
150249110 GGGTGTGCGA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 28 0.51
58 27 0.49
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:150256245 original size:142 final size:143
Alignment explanation
Indices: 150255988--150256423 Score: 840
Period size: 142 Copynumber: 3.1 Consensus size: 143
150255978 TGAGTTAAAT
*
150255988 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
*
150256053 GAGTGAGTTTGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
150256118 GTGTGCATGAGTA
131 GTGTGCATGAGTA
150256131 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAA-CATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
150256195 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
150256260 GTGTGCATGAGTA
131 GTGTGCATGAGTA
150256273 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
150256338 GAGTGAGTTCGAATGTTTAACAAAAAGGAAA-TTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
150256402 GTGTGCATGAGTA
131 GTGTGCATGAGTA
150256415 TTCGGCCAT
1 TTCGGCCAT
150256424 ATGGGGTATA
Statistics
Matches: 290, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
142 196 0.68
143 94 0.32
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (143 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGTGCATGAGTA
Found at i:150256894 original size:29 final size:29
Alignment explanation
Indices: 150256861--150256992 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
150256851 GTGACGAGAT
*
150256861 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
150256890 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
150256919 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
** * **
150256948 TAACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
150256977 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
150256993 AGCTCGAAGG
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:150263229 original size:40 final size:40
Alignment explanation
Indices: 150263174--150263395 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
150263164 TATTCGAATG
150263174 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
150263214 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* **
150263254 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
**
150263294 ATATCCGGGCTAAGTCCCGAAGGTTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
150263334 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
150263374 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
150263396 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:150266694 original size:25 final size:25
Alignment explanation
Indices: 150266660--150266708 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
150266650 AAGTTTGGCG
150266660 ATGCCACATTAAAGTGTTGTTCACA
1 ATGCCACATTAAAGTGTTGTTCACA
*
150266685 ATGCCACATTAAAGTGTTTTTCAC
1 ATGCCACATTAAAGTGTTGTTCAC
150266709 GAAGTGCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (25 bp):
ATGCCACATTAAAGTGTTGTTCACA
Found at i:150267744 original size:27 final size:27
Alignment explanation
Indices: 150267668--150267763 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 27
150267658 ACATAGGGGT
* * *
150267668 AAAACAGTCATCTTACCATAAAAGGGC
1 AAAACAATCATTTTACCATATAAGGGC
** *
150267695 AAATTAATCATTTTACCATATAAGTGC
1 AAAACAATCATTTTACCATATAAGGGC
*
150267722 AAAACAGTCATTTTACC-TCATAAGGGC
1 AAAACAATCATTTTACCAT-ATAAGGGC
* *
150267749 TACACAATCATTTTA
1 AAAACAATCATTTTA
150267764 TTAATTTGGG
Statistics
Matches: 55, Mismatches: 13, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAAACAATCATTTTACCATATAAGGGC
Found at i:150271151 original size:18 final size:18
Alignment explanation
Indices: 150271124--150271158 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
150271114 TGGCCCATTT
150271124 CAGTAACAGTAAACAGTG
1 CAGTAACAGTAAACAGTG
*
150271142 CAGTATCAGTAAACAGT
1 CAGTAACAGTAAACAGT
150271159 ATGCAAGTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Found at i:150271577 original size:27 final size:27
Alignment explanation
Indices: 150271482--150271561 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
150271472 ACATAGCGGT
* * * *
150271482 AAAACAGTCATCTTACCATAAAAAGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
150271509 AAAACAATCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
150271536 AAAACAGTCATTTTACCTCATAAGGG
1 AAAACAGTCATTTTACCACATAAGGG
150271562 GTACATAGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:150278766 original size:30 final size:30
Alignment explanation
Indices: 150278732--150278792 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
150278722 TCCTTAACTC
150278732 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
150278762 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
150278792 A
1 A
150278793 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:150281016 original size:27 final size:27
Alignment explanation
Indices: 150280986--150281047 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
150280976 ATTTACTAAA
*
150280986 ATACCCCTAAGTATG-AAAATTACTATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
150281013 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
150281039 ATACCCCTA
1 ATACCCCTA
150281048 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:150281241 original size:27 final size:28
Alignment explanation
Indices: 150281153--150281241 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 28
150281143 GAGGAAGCGT
* *
150281153 TCTGGCGGCTCTGCCACAAATATCCG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
150281180 TCTAGTGGCTCTGCCACAAATATCTCTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
150281208 TCCGGTGGCTCTACCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
150281235 TCTGGTG
1 TCTGGTG
150281242 ACTTTGTTAC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
27 36 0.72
28 14 0.28
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.30
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:150288607 original size:30 final size:30
Alignment explanation
Indices: 150288552--150288682 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
150288542 ATAGTGAATC
*
150288552 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
150288581 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
150288611 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
150288639 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
150288669 CGCACACTTAGTGC
1 CGCACACTTAGTGC
150288683 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:150288662 original size:58 final size:58
Alignment explanation
Indices: 150288551--150288682 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
150288541 TATAGTGAAT
* * * * *
150288551 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
150288610 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
150288668 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
150288683 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:150296524 original size:26 final size:27
Alignment explanation
Indices: 150296494--150296587 Score: 156
Period size: 26 Copynumber: 3.6 Consensus size: 27
150296484 ATAGTGAATC
150296494 CGCACACTTAGTGCTATAT-ATCAGCT
1 CGCACACTTAGTGCTATATAATCAGCT
150296520 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAGCT
**
150296547 CGCACAC-TAGTGCTATATAATCAAAT
1 CGCACACTTAGTGCTATATAATCAGCT
150296573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
150296588 GTACAATTTT
Statistics
Matches: 64, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
26 43 0.67
27 21 0.33
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAGCT
Found at i:150298882 original size:27 final size:28
Alignment explanation
Indices: 150298825--150298894 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
150298815 AAATTTGTAC
**
150298825 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
150298853 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
150298880 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150298895 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:150298903 original size:27 final size:27
Alignment explanation
Indices: 150298825--150298906 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
150298815 AAATTTGTAC
* *
150298825 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
150298853 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
150298880 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
150298907 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:150306094 original size:27 final size:28
Alignment explanation
Indices: 150306037--150306106 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
150306027 AAATTTGTAC
**
150306037 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
150306065 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
150306092 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150306107 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:150306115 original size:27 final size:27
Alignment explanation
Indices: 150306037--150306118 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
150306027 AAATTTGTAC
* *
150306037 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
150306065 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
150306092 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
150306119 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:150318529 original size:46 final size:46
Alignment explanation
Indices: 150318479--150318654 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
150318469 TGGTTGAGCA
150318479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
150318525 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
150318570 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
150318618 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
150318655 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:150318635 original size:93 final size:93
Alignment explanation
Indices: 150318476--150318647 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
150318466 GGATGGTTGA
* *
150318476 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
150318541 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
150318569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
150318634 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
150318648 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:150323641 original size:40 final size:40
Alignment explanation
Indices: 150323567--150323827 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
150323557 AACCCAAGTA
* *
150323567 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
150323606 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
150323646 CCTTCGGGACTTAGCTCGGATATA-TCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
150323685 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
150323725 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
150323765 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
150323805 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
150323828 CATCCGAATA
Statistics
Matches: 206, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 49 0.24
40 156 0.76
41 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:150342530 original size:40 final size:40
Alignment explanation
Indices: 150342402--150342689 Score: 393
Period size: 40 Copynumber: 7.5 Consensus size: 40
150342392 TGGATGATAA
* * * *
150342402 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTA-GT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
150342441 CCGGGCTAAGTCCCGAAGGCA-TT-TGCGAGTTACT-TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
150342478 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
150342518 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
150342558 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
150342597 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTA-TATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
150342635 CCGGGCTATGTCCC-AAGGTA-TTCAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
150342673 CC-GGTTAA-TCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
150342690 TACTTGGCTT
Statistics
Matches: 230, Mismatches: 11, Indels: 18
0.89 0.04 0.07
Matches are distributed among these distances:
36 6 0.03
37 50 0.22
38 38 0.17
39 63 0.27
40 73 0.32
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:150350497 original size:40 final size:40
Alignment explanation
Indices: 150350452--150350618 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
150350442 CGGAATATAA
*
150350452 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
150350492 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
150350532 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
150350572 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
150350611 CCGGATAT
1 CCGGATAT
150350619 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:150358456 original size:40 final size:39
Alignment explanation
Indices: 150358411--150358540 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
150358401 CGGAATATAA
150358411 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
150358451 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
150358491 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
150358531 CCGGATATAA
1 CCGGATATAA
150358541 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:150358555 original size:40 final size:40
Alignment explanation
Indices: 150358427--150358578 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
150358417 ATAACCATGT
* * *
150358427 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
150358467 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
150358507 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
150358547 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
150358579 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 87 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:150358561 original size:80 final size:80
Alignment explanation
Indices: 150358427--150358576 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
150358417 ATAACCATGT
* *
150358427 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
150358492 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
150358507 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
150358570 CCCGGAT
64 CCCGGAT
150358577 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:150363070 original size:5 final size:5
Alignment explanation
Indices: 150363060--150363091 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
150363050 TTGTGTGTTC
150363060 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
150363092 TCACAGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:150363074 original size:9 final size:9
Alignment explanation
Indices: 150363060--150363090 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
150363050 TTGTGTGTTC
150363060 TTTATTTTA
1 TTTATTTTA
150363069 TTTATTTTA
1 TTTATTTTA
150363078 TTTTATTTTA
1 -TTTATTTTA
150363088 TTT
1 TTT
150363091 TTCACAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:150363728 original size:2 final size:2
Alignment explanation
Indices: 150363721--150363751 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
150363711 TTTAAAATTT
150363721 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
150363752 GTGTTTATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:150363942 original size:2 final size:2
Alignment explanation
Indices: 150363929--150363962 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
150363919 GTCAATTCAT
150363929 TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T
150363963 TAAGTATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:150364663 original size:134 final size:132
Alignment explanation
Indices: 150364443--150364809 Score: 440
Period size: 134 Copynumber: 2.8 Consensus size: 132
150364433 ATGTTATATA
** *
150364443 TTTGGCAATTCGAAGAATCGTGCCCTATCGTGCTGGGTTGC-AATTTCTTGTTTGCTCAAAATAA
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGAATTTCTTGTTTGTTCAAAATAA
* ** **
150364507 TCGAATG-TCCCTTTAGAATTTCACTCATGT-TTTCCAAAAACTCTTTGAAACGAAGGAAATGTT
66 TCGAA-GATTCCTTTAGAATTTCACTCATGTCTTT--AAAAACTCTTCAAAACGAAGGAAATACT
150364570 CGATG
128 CGATG
* * * * * *
150364575 TTTGGTAATT-TGGGAATCGTGCCCTATCGTGCTGGGCTGCGATTTTTTTTCATTTGTTCAAAAT
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGA-ATTTCTT-GTTTGTTCAAAAT
*
150364639 AATCGAAGATTCCTTT-GAAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGTAATACT
64 AATCGAAGATTCCTTTAG-AATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGAAATACT
150364703 CGATG
128 CGATG
* *
150364708 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCG-GTTTCCTGTTTGTTCAAAATAA
1 TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGAATTTCTTGTTTGTTCAAAATAA
* * * *
150364772 TCAAATATTCCTTTAGAATTTCATTCATGCTCTCTAAA
66 TCGAAGATTCCTTTAGAATTTCACTCATG-TCTTTAAA
150364810 TTCTAAAATA
Statistics
Matches: 200, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
131 64 0.32
132 22 0.11
133 44 0.22
134 67 0.34
135 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (132 bp):
TTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCGAATTTCTTGTTTGTTCAAAATAA
TCGAAGATTCCTTTAGAATTTCACTCATGTCTTTAAAAACTCTTCAAAACGAAGGAAATACTCGA
TG
Found at i:150372808 original size:21 final size:21
Alignment explanation
Indices: 150372782--150372825 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
150372772 TCAAAGGGCT
*
150372782 ATGGTAACCTTTTTTCACGAC
1 ATGGTAACCCTTTTTCACGAC
*
150372803 ATGGTAACCCTTTTTCATGAC
1 ATGGTAACCCTTTTTCACGAC
150372824 AT
1 AT
150372826 ATGTCGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
ATGGTAACCCTTTTTCACGAC
Found at i:150376584 original size:133 final size:133
Alignment explanation
Indices: 150376346--150376726 Score: 555
Period size: 133 Copynumber: 2.9 Consensus size: 133
150376336 CTGATTCTAC
* * * * * * * *
150376346 AGATCTTGTCTCCTTGAAGTTGCAGCGGAGCAAATCGAAAATGGCGAATCTAGTCATCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAATCTTGTCTTCCTGAAGT
**
150376411 TGCAGTGAAACAGATTTAAGCTGCCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
66 TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
150376476 TGT
131 TGT
*
150376479 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATAGAAGACGGTGAATCTTGTCTTCCTGAAGT
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAATCTTGTCTTCCTGAAGT
*
150376544 TGTAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
66 TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
150376609 TGT
131 TGT
* * * *
150376612 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGAGTCTTGTCTTCCTGAAGA
1 AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAATCTTGTCTTCCTGAAGT
* * * * * *
150376677 TGCAGTGAAGCAGATTGAAGTCACTATCCTTATCTCTCTAAAGTTCTAGT
66 TGCAGTGAAACAGATTTAAGCCACCATCC-TATCTCCCTAAAGTTGTAGT
150376727 AGAGCAGGAT
Statistics
Matches: 223, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
133 205 0.92
134 18 0.08
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (133 bp):
AGATCTTGTTTCCCTGAAGTTGCAGCGGAGCAGATCGAAGACGGTGAATCTTGTCTTCCTGAAGT
TGCAGTGAAACAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGGGTAGGTTGAAGAT
TGT
Found at i:150378173 original size:15 final size:16
Alignment explanation
Indices: 150378142--150378174 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
150378132 ATTAAGCTTT
150378142 TTATTTAAAATATTCA
1 TTATTTAAAATATTCA
*
150378158 TTATTTTAAA-ATTCA
1 TTATTTAAAATATTCA
150378173 TT
1 TT
150378175 TAATACTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTTAAAATATTCA
Found at i:150379550 original size:132 final size:131
Alignment explanation
Indices: 150379281--150379679 Score: 491
Period size: 132 Copynumber: 3.0 Consensus size: 131
150379271 TATTCATTTA
* * ** * *
150379281 AAAAACTTTTTAAAATGAAGGCGATGTTCGATATTTGGCAATTCGTGGAATCATGCCCTATCGTG
1 AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTG
* * * * * *
150379346 CTGGGTTGC-AATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACCCATGT-T
65 CTGGGTTGCGATTTTCTCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCT
150379409 TT
130 TT
* *
150379411 CCAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGTAATTCGGGAATCGTGCCCTATCGT
1 --AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGT
* * *
150379476 GCTGGGTTGCGATTTTTTTCATTTGTTCAAAACAATCGAATATTCCTTTGGAATTTCACTCATGT
64 GCTGGGTTGCGA-TTTTCTCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
150379541 CTTT
128 CTTT
* * *
150379545 AAAAACTCTTCAAAACGAAGGTAATAGTT-GATGTTTGGCAATTCGGGGAATCGTGCCCTATTGT
1 AAAAACTCTTTAAAACGAAGGAAAT-GTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATCGT
* * *
150379609 GCTGGGTTGCGGTTTCCT-ATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGCT
64 GCTGGGTTGCGATTTTCTCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG-T
*
150379673 CTCT
128 CTTT
150379677 AAA
1 AAA
150379680 TTCTAAAATA
Statistics
Matches: 232, Mismatches: 29, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
131 68 0.29
132 86 0.37
133 75 0.32
134 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGC
TGGGTTGCGATTTTCTCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTCTT
T
Found at i:150383564 original size:40 final size:40
Alignment explanation
Indices: 150383470--150383619 Score: 171
Period size: 39 Copynumber: 3.8 Consensus size: 40
150383460 GGATATAGCT
* * *
150383470 ACTCGCTCAAATGCCTTCGGGACATAGCCC-G-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
150383509 ACTCGCACAATTGCCTTTGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
150383549 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
150383588 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
150383620 TTATCATCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 59 0.62
40 34 0.36
41 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:150385166 original size:40 final size:42
Alignment explanation
Indices: 150385073--150385257 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 42
150385063 AAGCCAAGTA
* * *
150385073 CCTTCGGGATTTA-ACCGGATA-TAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATACTAGCTAACTCGCACAAATG
* *
150385111 CCTTCGGGACATAGCCCGGATA-TAG-TAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATACTAGCTAACTCGCACAAATG
*
150385151 CCTTCGGGACTTAGCCCGGATATAGTAGCTACAGCCTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG--ATACTAGCTA-A--C-TCGCACAAATG
* * *
150385199 CCTTCGGGACTTAGCCCGGA-ACTAG-TCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATACTAGCTAACTCGCACAAATG
150385239 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
150385258 TTATCATCCG
Statistics
Matches: 126, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
38 12 0.10
39 17 0.13
40 50 0.40
41 1 0.01
42 3 0.02
43 4 0.03
44 3 0.02
45 5 0.04
46 1 0.01
47 1 0.01
48 29 0.23
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (42 bp):
CCTTCGGGACTTAGCCCGGATACTAGCTAACTCGCACAAATG
Found at i:150393125 original size:40 final size:40
Alignment explanation
Indices: 150393038--150393253 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
150393028 AAGCCAAGTA
* * *
150393038 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
150393076 CCTTCGGGACATAGCCCGGATATAGTAACTTGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
150393116 CCTTTGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
150393155 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
150393195 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
150393235 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
150393254 TTATCATCCG
Statistics
Matches: 156, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
38 12 0.08
39 50 0.32
40 94 0.60
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:150393184 original size:79 final size:79
Alignment explanation
Indices: 150393038--150393253 Score: 285
Period size: 79 Copynumber: 2.7 Consensus size: 79
150393028 AAGCCAAGTA
* * * * *
150393038 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
* *
150393101 TAACTTGCACCAATG
65 TAACTCGCACAAATG
* *
150393116 CCTTTGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
150393181 AACTCGCACAAATG
66 AACTCGCACAAATG
* *
150393195 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
150393254 TTATCATCCG
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 20 0.16
79 72 0.59
80 30 0.25
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
AACTCGCACAAATG
Found at i:150395585 original size:2 final size:2
Alignment explanation
Indices: 150395578--150395610 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
150395568 ATCATGTGAC
150395578 AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
150395611 GTGTAAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:150395601 original size:15 final size:15
Alignment explanation
Indices: 150395581--150395610 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
150395571 ATGTGACATA
150395581 TATATATATATATAT
1 TATATATATATATAT
150395596 TATATATATATATAT
1 TATATATATATATAT
150395611 GTGTAAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:150400907 original size:40 final size:39
Alignment explanation
Indices: 150400742--150400925 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
150400732 AAATTGAATG
* * *
150400742 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
150400782 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
150400822 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
150400862 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
150400901 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
150400926 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:150400950 original size:80 final size:81
Alignment explanation
Indices: 150400782--150400970 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
150400772 GCTGGAAATT
* * * *
150400782 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
150400847 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
150400863 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
150400926 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
150400942 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
150400971 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:150409026 original size:40 final size:39
Alignment explanation
Indices: 150408861--150409044 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
150408851 AAATTGAATG
* * *
150408861 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
150408901 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
150408941 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
150408981 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
150409020 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
150409045 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:150409069 original size:80 final size:81
Alignment explanation
Indices: 150408901--150409089 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
150408891 GCTGGAAATT
* * * *
150408901 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
150408966 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
150408982 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
150409045 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
150409061 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
150409090 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:150415024 original size:23 final size:24
Alignment explanation
Indices: 150414975--150415025 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
150414965 GAGCATTAGG
* * *
150414975 ATAAAAATAAAAATAATATTTACA
1 ATAAAAATAAAAATAATAATAAAA
*
150414999 ATAAAAA-GAAAATAATAATAAAA
1 ATAAAAATAAAAATAATAATAAAA
150415022 ATAA
1 ATAA
150415026 TGATATGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (24 bp):
ATAAAAATAAAAATAATAATAAAA
Found at i:150415342 original size:21 final size:20
Alignment explanation
Indices: 150415316--150415457 Score: 66
Period size: 21 Copynumber: 7.1 Consensus size: 20
150415306 AAACATAATA
*
150415316 ATAGTATTACAAAGTATATAC
1 ATAGTATTA-AAAATATATAC
*
150415337 ATAGTATTAAAAATATGTAC
1 ATAGTATTAAAAATATATAC
* *
150415357 ATA--A-T-ATAATGT-TA-
1 ATAGTATTAAAAATATATAC
* * * *
150415371 AAAATA-CAAAAATA-ATAT
1 ATAGTATTAAAAATATATAC
150415389 ATAGTTATTAAAAATATATAC
1 ATAG-TATTAAAAATATATAC
*
150415410 ATAAGATAATGTAAAAAATATATAAT
1 AT-AG-T-AT-T-AAAAATATAT-AC
*
150415436 ATAGTATTCAAAATATATAC
1 ATAGTATTAAAAATATATAC
150415456 AT
1 AT
150415458 GATATATATA
Statistics
Matches: 92, Mismatches: 16, Indels: 27
0.68 0.12 0.20
Matches are distributed among these distances:
14 2 0.02
15 2 0.02
16 6 0.07
17 7 0.08
18 3 0.03
19 2 0.02
20 22 0.24
21 23 0.25
22 4 0.04
23 4 0.04
24 2 0.02
25 12 0.13
26 3 0.03
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (20 bp):
ATAGTATTAAAAATATATAC
Found at i:150415359 original size:20 final size:21
Alignment explanation
Indices: 150415316--150415359 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
150415306 AAACATAATA
*
150415316 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
150415337 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
150415357 ATA
1 ATA
150415360 ATATAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:150415413 original size:28 final size:27
Alignment explanation
Indices: 150415337--150415465 Score: 98
Period size: 25 Copynumber: 5.1 Consensus size: 27
150415327 AAGTATATAC
*
150415337 ATAGTATTAAAAATATGTACATAATAT
1 ATAGTATTAAAAATATATACATAATAT
* * * *
150415364 A-A-TGTTAAAAATACAAAAATAATAT
1 ATAGTATTAAAAATATATACATAATAT
*
150415389 ATAGTTATTAAAAATATATACATAAGAT
1 ATAG-TATTAAAAATATATACATAATAT
*
150415417 A-A-T-GTAAAAA-ATAT--AT-A-AT
1 ATAGTATTAAAAATATATACATAATAT
* *
150415436 ATAGTATTCAAAATATATACATGATAT
1 ATAGTATTAAAAATATATACATAATAT
150415463 ATA
1 ATA
150415466 TAAAAATACA
Statistics
Matches: 78, Mismatches: 13, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
19 3 0.04
20 2 0.03
21 3 0.04
22 5 0.06
23 8 0.10
24 6 0.08
25 22 0.28
26 3 0.04
27 7 0.09
28 19 0.24
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (27 bp):
ATAGTATTAAAAATATATACATAATAT
Found at i:150415471 original size:23 final size:22
Alignment explanation
Indices: 150415394--150415473 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 22
150415384 AATATATAGT
150415394 TATTAAAAATATATACATAAGATA
1 TATTAAAAATATATACAT--GATA
150415418 -ATGTAAAAAATATATA-AT-ATA
1 TAT-T-AAAAATATATACATGATA
*
150415439 GTATTCAAAATATATACATGATA
1 -TATTAAAAATATATACATGATA
150415462 TATATAAAAATA
1 TAT-TAAAAATA
150415474 CAATATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
21 13 0.28
22 6 0.13
23 14 0.30
24 3 0.06
25 11 0.23
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (22 bp):
TATTAAAAATATATACATGATA
Found at i:150415585 original size:21 final size:20
Alignment explanation
Indices: 150415559--150415599 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
150415549 ATATACCTAT
* *
150415559 ATATATATTAAAGATATATAC
1 ATATATAATAAA-ACATATAC
150415580 ATATATAATAAAACATATAC
1 ATATATAATAAAACATATAC
150415600 TAATATCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATATAATAAAACATATAC
Found at i:150415654 original size:23 final size:24
Alignment explanation
Indices: 150415620--150415786 Score: 83
Period size: 25 Copynumber: 7.1 Consensus size: 24
150415610 AATAATAAGG
150415620 ATAATA-T-AAAAATATATACATA
1 ATAATAGTAAAAAATATATACATA
150415642 A-AATAGTATAAAAAATATATA-ACTA
1 ATAATAG--TAAAAAATATATACA-TA
*
150415667 ATAATA-TTAAAAATATATACATGA
1 ATAATAGTAAAAAATATATACAT-A
*
150415691 GATAACA-T-AAAAATATATGA-ATA
1 -ATAATAGTAAAAAATATAT-ACATA
* * *
150415714 GTATGATATTTAAAAA-ATATACATA
1 --ATAATAGTAAAAAATATATACATA
150415739 AT-ATA-TATAAAAATATATA-ATTA
1 ATAATAGTA-AAAAATATATACA-TA
* *
150415762 ATAATA-T-TAAAATACATACATA
1 ATAATAGTAAAAAATATATACATA
150415784 ATA
1 ATA
150415787 TATATGAAAA
Statistics
Matches: 118, Mismatches: 8, Indels: 38
0.72 0.05 0.23
Matches are distributed among these distances:
21 5 0.04
22 24 0.20
23 26 0.22
24 25 0.21
25 29 0.25
26 9 0.08
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAATAGTAAAAAATATATACATA
Found at i:150415655 original size:25 final size:23
Alignment explanation
Indices: 150415620--150415846 Score: 161
Period size: 24 Copynumber: 9.7 Consensus size: 23
150415610 AATAATAAGG
150415620 ATAATA-TAAAAATATATACATA
1 ATAATATTAAAAATATATACATA
150415642 A-AATAGTATAAAAAATATATA-ACTA
1 ATAATA-T-T-AAAAATATATACA-TA
150415667 ATAATATTAAAAATATATACATGA
1 ATAATATTAAAAATATATACAT-A
*
150415691 GATAACA-TAAAAATATATGA-ATA
1 -ATAATATTAAAAATATAT-ACATA
*
150415714 GTATGATATTTAAAAA-ATATACATA
1 --ATAATA-TTAAAAATATATACATA
150415739 AT-ATATATAAAAATATATA-ATTA
1 ATAATAT-TAAAAATATATACA-TA
*
150415762 ATAATATT-AAAATACATACATA
1 ATAATATTAAAAATATATACATA
* * *
150415784 ATATATATGAAAAACACATACAATA
1 ATA-ATATTAAAAATATATAC-ATA
* *
150415809 TATATATATTCAAAAT-GATA-ATA
1 -ATA-ATATTAAAAATATATACATA
150415832 ATAATATTAAAAATA
1 ATAATATTAAAAATA
150415847 ACCATTAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 48
0.74 0.05 0.21
Matches are distributed among these distances:
21 15 0.09
22 28 0.17
23 33 0.20
24 37 0.22
25 34 0.20
26 22 0.13
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATATTAAAAATATATACATA
Found at i:150415767 original size:14 final size:12
Alignment explanation
Indices: 150415488--150415791 Score: 58
Period size: 11 Copynumber: 25.6 Consensus size: 12
150415478 ATTAAAAAGG
*
150415488 TATATATACGTAA
1 TATATATA-ATAA
*
150415501 TATATATAAAAA
1 TATATATAATAA
**
150415513 TGCATAT-ATAA
1 TATATATAATAA
*
150415524 TATA-ATATTAA
1 TATATATAATAA
* *
150415535 AATATTTACATAA
1 TATATATA-ATAA
**
150415548 TATATA-CCT-A
1 TATATATAATAA
*
150415558 TATATATATTAA
1 TATATATAATAA
*
150415570 -AGATAT-AT-A
1 TATATATAATAA
*
150415579 CATATATAATAA
1 TATATATAATAA
* * *
150415591 AACATATACTAA
1 TATATATAATAA
150415603 TATCAATAATAATAA
1 TAT--AT-ATAATAA
*
150415618 GGATAATATAA-AA
1 -TAT-ATATAATAA
150415631 -ATATATACATAA
1 TATATATA-ATAA
*
150415643 AATAGTATAA-AA
1 TATA-TATAATAA
*
150415655 AATATATAACTAA
1 TATATATAA-TAA
150415668 TA-ATATTAA-AA
1 TATATA-TAATAA
150415679 -ATATATACATGAGA
1 TATATATA-AT-A-A
*
150415693 TA-ACATAA-AA
1 TATATATAATAA
*
150415703 -ATATATGAATAG
1 TATATAT-AATAA
*
150415715 TATGATAT-TTAA
1 TAT-ATATAATAA
* *
150415727 AAAATATACATAA
1 TATATATA-ATAA
150415740 TATATATAA-AA
1 TATATATAATAA
150415751 -ATATATAATTAA
1 TATATATAA-TAA
150415763 TA-ATATTAA-AA
1 TATATA-TAATAA
* *
150415774 TACATA-CATAA
1 TATATATAATAA
150415785 TATATAT
1 TATATAT
150415792 GAAAAACACA
Statistics
Matches: 212, Mismatches: 40, Indels: 79
0.64 0.12 0.24
Matches are distributed among these distances:
9 2 0.01
10 36 0.17
11 54 0.25
12 45 0.21
13 44 0.21
14 19 0.09
15 10 0.05
16 2 0.01
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.35
Consensus pattern (12 bp):
TATATATAATAA
Found at i:150415802 original size:24 final size:23
Alignment explanation
Indices: 150415623--150415846 Score: 117
Period size: 23 Copynumber: 9.5 Consensus size: 23
150415613 AATAAGGATA
* *
150415623 ATATAAAAATATATACATAAAAT
1 ATATAAAAATACATACATAATAT
*
150415646 AGTATAAAAAATATATA-ACTAATA-
1 A-TAT-AAAAATACATACA-TAATAT
*
150415670 ATATTAAAAATATATACATGAGATA-
1 ATA-TAAAAATACATACAT-A-ATAT
* *
150415695 ACATAAAAATATATGA-ATAGTATGAT
1 ATATAAAAATACAT-ACATA--AT-AT
* *
150415721 ATTTAAAAA-ATATACATAATAT
1 ATATAAAAATACATACATAATAT
*
150415743 ATATAAAAATATATA-ATTAATA-
1 ATATAAAAATACATACA-TAATAT
*
150415765 ATATTAAAATACATACATAATAT
1 ATATAAAAATACATACATAATAT
*
150415788 ATATGAAAAACACATACAATATATAT
1 ATAT-AAAAATACATAC-ATA-ATAT
* *
150415814 ATATTCAAAAT-GATA-ATAATA-
1 ATA-TAAAAATACATACATAATAT
150415835 ATATTAAAAATA
1 ATA-TAAAAATA
150415847 ACCATTAATA
Statistics
Matches: 166, Mismatches: 14, Indels: 43
0.74 0.06 0.19
Matches are distributed among these distances:
21 10 0.06
22 32 0.19
23 36 0.22
24 34 0.20
25 35 0.21
26 18 0.11
27 1 0.01
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (23 bp):
ATATAAAAATACATACATAATAT
Found at i:150415824 original size:72 final size:69
Alignment explanation
Indices: 150415620--150415846 Score: 214
Period size: 72 Copynumber: 3.2 Consensus size: 69
150415610 AATAATAAGG
* *
150415620 ATAATATAAAAATATATACATAAAATAGTATAAAAAATATATAACTAATA-ATATTAAAAATATA
1 ATAATATAAAAATATATACATAATATA-TATAAAAAATATACAA-TAATATATATTAAAAATATA
*
150415684 TACATGA
64 TA-ATTA
* *
150415691 GATAACATAAAAATATATGA-ATAGTATGATATTTAAAAAATATAC-ATAATATATA-TAAAAAT
1 -ATAATATAAAAATATAT-ACATA--AT-ATATATAAAAAATATACAATAATATATATTAAAAAT
150415753 ATATAATTA
61 ATATAATTA
* * * * *
150415762 ATAATATTAAAATACATACATAATATATATGAAAAACACATACAATATATATATATTCAAAAT-G
1 ATAATATAAAAATATATACATAATATATAT-AAAAA-ATATACAATA-ATATATATTAAAAATAT
150415826 ATAA-TA
63 ATAATTA
150415832 ATAATATTAAAAATA
1 ATAATA-TAAAAATA
150415847 ACCATTAATA
Statistics
Matches: 130, Mismatches: 13, Indels: 25
0.77 0.08 0.15
Matches are distributed among these distances:
67 5 0.04
68 7 0.05
69 6 0.05
70 28 0.22
71 21 0.16
72 42 0.32
73 5 0.04
74 13 0.10
75 3 0.02
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (69 bp):
ATAATATAAAAATATATACATAATATATATAAAAAATATACAATAATATATATTAAAAATATATA
ATTA
Found at i:150416017 original size:28 final size:31
Alignment explanation
Indices: 150415955--150416017 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 31
150415945 CAAAATATTG
* *
150415955 ATAATAGATATAATAATGATATTAATAAAAT
1 ATAATAGATATAATAATAATATTAATAAAAA
150415986 ATAATAG-TAT-A-AATAATATTAA-AATAAA
1 ATAATAGATATAATAATAATATTAATAA-AAA
150416014 ATAA
1 ATAA
150416018 AATACGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 2 0.07
28 16 0.55
29 1 0.03
30 3 0.10
31 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (31 bp):
ATAATAGATATAATAATAATATTAATAAAAA
Found at i:150418845 original size:19 final size:19
Alignment explanation
Indices: 150418821--150418859 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
150418811 CCGTAAAAGG
150418821 AAGAATGAAAATTTTATAC
1 AAGAATGAAAATTTTATAC
150418840 AAGAATGAAAATTTTATAC
1 AAGAATGAAAATTTTATAC
150418859 A
1 A
150418860 TTCTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (19 bp):
AAGAATGAAAATTTTATAC
Found at i:150429657 original size:45 final size:45
Alignment explanation
Indices: 150429608--150429706 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
150429598 GCAAGGAAGT
* * *
150429608 AGACTGAAGATTGAAAACCTTATCTCCCTGAAGTTGCAGTGGAGC
1 AGACTGAAGATAGAAAACCTTATCTCCCTGAAGATGCAGTGGAAC
** * * *
150429653 AGACTGAAGATAGCGAATCTTATTTCCCTGAGGATGCAGTGGAAC
1 AGACTGAAGATAGAAAACCTTATCTCCCTGAAGATGCAGTGGAAC
*
150429698 AGATTGAAG
1 AGACTGAAG
150429707 CTATAAATAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (45 bp):
AGACTGAAGATAGAAAACCTTATCTCCCTGAAGATGCAGTGGAAC
Found at i:150429883 original size:45 final size:44
Alignment explanation
Indices: 150429791--150429978 Score: 184
Period size: 45 Copynumber: 4.2 Consensus size: 44
150429781 GCAGTGAAGC
* * * * *
150429791 AGTTGTAGTGGAGCA-AGTTGAAGTAGCAAGTCTTATCCCCCTGA
1 AGTTGCAGTGGAGCAGA-CTGAAGTAGTAAGCCTTATCTCCCTGA
* * *
150429835 AGTTGCAGTAGAGCAGACTGAAG-ATTGAAGACCTTATCTCCCTAA
1 AGTTGCAGTGGAGCAGACTGAAGTAGT-AAG-CCTTATCTCCCTGA
** *
150429880 AGTTGCAGTGGAGCAGGTTGAAGTAGTAAGTCTTATCTCCCTGA
1 AGTTGCAGTGGAGCAGACTGAAGTAGTAAGCCTTATCTCCCTGA
* *
150429924 AGTTGCAGTGGAGCAGACTGAAGTTAGTGAA-TCTTATTTCCCTGA
1 AGTTGCAGTGGAGCAGACTGAAG-TAGT-AAGCCTTATCTCCCTGA
*
150429969 AGATGCAGTG
1 AGTTGCAGTG
150429979 AAACATATTG
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 54 0.45
45 61 0.51
46 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (44 bp):
AGTTGCAGTGGAGCAGACTGAAGTAGTAAGCCTTATCTCCCTGA
Found at i:150429990 original size:89 final size:89
Alignment explanation
Indices: 150429808--150429991 Score: 228
Period size: 89 Copynumber: 2.1 Consensus size: 89
150429798 GTGGAGCAAG
150429808 TTGAAGTAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGAAGACCTTATC
1 TTGAAGTAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGAAGACCTTATC
* * * *
150429873 TCCCTAAAGTTGCAGTGGAGCAGG
66 TCCCTAAAGATGCAGTGAAACAGA
* * * * *
150429897 TTGAAGTAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TT-AGTGAATCTTA
1 TTGAAGTAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGA-AG-ACCTTA
* * *
150429960 TTTCCCTGAAGATGCAGTGAAACATA
64 TCTCCCTAAAGATGCAGTGAAACAGA
150429986 TTGAAG
1 TTGAAG
150429992 CTATAAATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 1 0.01
88 3 0.04
89 77 0.95
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (89 bp):
TTGAAGTAGCAAGTCTTATCCCCCTGAAGTTGCAGTAGAGCAGACTGAAGATTGAAGACCTTATC
TCCCTAAAGATGCAGTGAAACAGA
Found at i:150431912 original size:35 final size:35
Alignment explanation
Indices: 150431866--150431936 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
150431856 TATGTTACTT
150431866 TACATACATAATCTCTTTTAAATATACTTATATAC
1 TACATACATAATCTCTTTTAAATATACTTATATAC
150431901 TACATACATAATCTCTTTTAAATATACTTATATAC
1 TACATACATAATCTCTTTTAAATATACTTATATAC
150431936 T
1 T
150431937 TTTTTAAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (35 bp):
TACATACATAATCTCTTTTAAATATACTTATATAC
Found at i:150433716 original size:21 final size:18
Alignment explanation
Indices: 150433689--150433727 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
150433679 TTGCCTAATG
*
150433689 AAATAACAACTTCAGTAC
1 AAATAATAACTTCAGTAC
150433707 AAATAATAACTTCAGTAC
1 AAATAATAACTTCAGTAC
150433725 AAA
1 AAA
150433728 GAGAAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.18, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAATAACTTCAGTAC
Found at i:150435813 original size:26 final size:26
Alignment explanation
Indices: 150435764--150435872 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
150435754 TGATACAAAT
150435764 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
150435789 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
150435815 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
150435841 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
150435867 TGATAA
1 TGATAA
150435873 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 13 0.16
26 68 0.84
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:150437378 original size:26 final size:26
Alignment explanation
Indices: 150437349--150437401 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
150437339 TTTACAGTTT
150437349 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
150437375 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
150437401 T
1 T
150437402 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:150437619 original size:21 final size:21
Alignment explanation
Indices: 150437593--150437640 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
150437583 ATTCCCCACA
150437593 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
150437614 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
150437635 TTGAGT
1 TGGAGT
150437641 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:150437893 original size:137 final size:136
Alignment explanation
Indices: 150437647--150437932 Score: 545
Period size: 137 Copynumber: 2.1 Consensus size: 136
150437637 GAGTAGTCTC
150437647 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
150437712 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCAGTACC
150437777 ACTGTTA
130 ACTGTTA
150437784 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
150437849 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
150437914 CTGTTA
131 CTGTTA
**
150437920 CCTGAATGGGCTT
1 CCCAAATGGGCTT
150437933 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 26 0.18
137 121 0.82
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCAGTACCA
CTGTTA
Found at i:150441713 original size:26 final size:26
Alignment explanation
Indices: 150441677--150441786 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
150441667 TGATACAAAT
150441677 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
150441703 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
150441729 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
150441755 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
150441781 TGATAA
1 TGATAA
150441787 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:150443292 original size:26 final size:26
Alignment explanation
Indices: 150443263--150443315 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
150443253 TTTACAGTTT
150443263 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
150443289 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
150443315 T
1 T
150443316 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:150446157 original size:32 final size:29
Alignment explanation
Indices: 150446093--150446233 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 29
150446083 TTGACGAAGT
* *
150446093 CACCAGAT-ACAAATAT-TGTGGCAGATC
1 CACCAGATGACAGATATATGTGGCAGAGC
*
150446120 CATCAGA--ACAGATATATGTGGCAGAGC
1 CACCAGATGACAGATATATGTGGCAGAGC
*
150446147 CACCAGAT--CAGATA-ACTGTGGCATAGC
1 CACCAGATGACAGATATA-TGTGGCAGAGC
150446174 CACCAG--GACAGATATATGTGGCAGAGC
1 CACCAGATGACAGATATATGTGGCAGAGC
* *
150446201 CACAAGAT--CAGATA-ATTGTGGCATAGC
1 CACCAGATGACAGATATA-TGTGGCAGAGC
150446228 CACCAG
1 CACCAG
150446234 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
26 9 0.09
27 86 0.90
28 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (29 bp):
CACCAGATGACAGATATATGTGGCAGAGC
Found at i:150446234 original size:54 final size:54
Alignment explanation
Indices: 150446107--150446236 Score: 206
Period size: 54 Copynumber: 2.4 Consensus size: 54
150446097 AGATACAAAT
* * * * *
150446107 ATTGTGGCAGATCCATCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATA
1 ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACAAGATCAGATA
*
150446161 ACTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACAAGATCAGATA
1 ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACAAGATCAGATA
150446215 ATTGTGGCATAGCCACCAGGAC
1 ATTGTGGCATAGCCACCAGGAC
150446237 GCTTCCTCCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.18
Consensus pattern (54 bp):
ATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACAAGATCAGATA
Found at i:150478981 original size:17 final size:17
Alignment explanation
Indices: 150478959--150478994 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
150478949 GGGAAGATAG
150478959 AGAAAGAGAGACAAGAA
1 AGAAAGAGAGACAAGAA
* *
150478976 AGAAAGAGATACAGGAA
1 AGAAAGAGAGACAAGAA
150478993 AG
1 AG
150478995 CTAAGGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.61, C:0.06, G:0.31, T:0.03
Consensus pattern (17 bp):
AGAAAGAGAGACAAGAA
Found at i:150500022 original size:18 final size:19
Alignment explanation
Indices: 150500001--150500036 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
150499991 AATAAAGAAA
*
150500001 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
150500019 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
150500037 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:150501428 original size:59 final size:58
Alignment explanation
Indices: 150501332--150501463 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
150501322 AAAATTGTAC
150501332 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
150501390 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
150501449 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150501464 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:150501452 original size:88 final size:89
Alignment explanation
Indices: 150501302--150501463 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
150501292 GACAAGATTG
* * *
150501302 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
150501367 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
150501391 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
150501455 AAGTGTGCG
66 AAGTGTGCG
150501464 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:150501475 original size:29 final size:29
Alignment explanation
Indices: 150501332--150501463 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
150501322 AAAATTGTAC
*
150501332 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150501361 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150501390 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
150501420 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150501449 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150501464 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:150507703 original size:18 final size:19
Alignment explanation
Indices: 150507682--150507717 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
150507672 AATAAAGAAA
*
150507682 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
150507700 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
150507718 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:150509108 original size:59 final size:58
Alignment explanation
Indices: 150509012--150509143 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
150509002 AAAATTGTAC
150509012 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
150509070 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
150509129 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150509144 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:150509132 original size:88 final size:89
Alignment explanation
Indices: 150508982--150509143 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
150508972 GACAAGATTG
* * *
150508982 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
150509047 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
150509071 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
150509135 AAGTGTGCG
66 AAGTGTGCG
150509144 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:150509155 original size:29 final size:29
Alignment explanation
Indices: 150509012--150509143 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
150509002 AAAATTGTAC
*
150509012 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150509041 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150509070 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
150509100 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
150509129 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
150509144 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:150511450 original size:28 final size:29
Alignment explanation
Indices: 150511410--150511468 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
150511400 CATGACTGTA
*
150511410 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATCTGGGCCTAATGGGCCATATG
150511438 AATGTGATCTGGGCCTAATGGGCCATATG
1 AATGTGATCTGGGCCTAATGGGCCATATG
150511467 AA
1 AA
150511469 AGAGATTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
AATGTGATCTGGGCCTAATGGGCCATATG
Found at i:150511482 original size:28 final size:28
Alignment explanation
Indices: 150511418--150511493 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
150511408 TAAATGTGAT
* *
150511418 TTGGGCCTAAT-GGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAAAGAGA
150511445 TCTGGGCCTAATGGGCCATATGAAAGAGA
1 T-TGGGCCTAATGGGCCATATGAAAGAGA
* * *
150511474 TTGGACCTAGTGGGCTATAT
1 TTGGGCCTAATGGGCCATAT
150511494 ACAAGTATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.02
28 26 0.62
29 15 0.36
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAAAGAGA
Found at i:150513740 original size:15 final size:15
Alignment explanation
Indices: 150513722--150513751 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
150513712 TATGAATAGG
150513722 TATATTTAATTTAGT
1 TATATTTAATTTAGT
150513737 TATATTTAATTTAGT
1 TATATTTAATTTAGT
150513752 GATTTGTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATATTTAATTTAGT
Found at i:150518730 original size:16 final size:16
Alignment explanation
Indices: 150518706--150518742 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
150518696 TTTAAAAAGG
*
150518706 AAAACAAATGAATCTT
1 AAAAAAAATGAATCTT
*
150518722 AAAAAAAATGAGTCTT
1 AAAAAAAATGAATCTT
150518738 AAAAA
1 AAAAA
150518743 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (16 bp):
AAAAAAAATGAATCTT
Found at i:150526885 original size:26 final size:26
Alignment explanation
Indices: 150526856--150526933 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
150526846 TTTGAGTTGA
150526856 GTCCGAGTTAACTTATGGATGCGAAT
1 GTCCGAGTTAACTTATGGATGCGAAT
** * **
150526882 GTCC--G--AACTCGTTGA-GTTAA-
1 GTCCGAGTTAACTTATGGATGCGAAT
150526902 GTCCGAGTTAACTTATGGATGCGAAT
1 GTCCGAGTTAACTTATGGATGCGAAT
150526928 GTCCGA
1 GTCCGA
150526934 ACTCGTTGAG
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 8 0.22
24 8 0.22
25 3 0.08
26 10 0.28
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
GTCCGAGTTAACTTATGGATGCGAAT
Found at i:150526897 original size:46 final size:46
Alignment explanation
Indices: 150526837--150527058 Score: 247
Period size: 46 Copynumber: 4.8 Consensus size: 46
150526827 TGGTTGAGCA
*
150526837 TCCGAACTCTTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
*
150526883 TCCGAACTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
* *
150526929 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATG-GATGCGAA-T--G
* * * * *
150526974 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
* * *
150527022 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGG
150527059 GCGGGTTACA
Statistics
Matches: 153, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.02
43 6 0.04
44 1 0.01
45 1 0.01
46 106 0.69
47 26 0.17
48 1 0.01
49 1 0.01
50 5 0.03
51 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
Found at i:150530019 original size:14 final size:15
Alignment explanation
Indices: 150529999--150530053 Score: 69
Period size: 14 Copynumber: 3.7 Consensus size: 15
150529989 GTATCTTGGG
150529999 TTTCTTTATTCTTGA
1 TTTCTTTATTCTTGA
*
150530014 -TTCTTTATTCTGGA
1 TTTCTTTATTCTTGA
*
150530028 TTTCTCTA-TCTTGGA
1 TTTCTTTATTCTT-GA
150530043 TTTCTTTATTC
1 TTTCTTTATTC
150530054 GGTTTCTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 16 0.48
15 15 0.45
16 2 0.06
ACGTcount: A:0.13, C:0.16, G:0.09, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTTGA
Found at i:150530042 original size:15 final size:15
Alignment explanation
Indices: 150529990--150530051 Score: 67
Period size: 15 Copynumber: 4.2 Consensus size: 15
150529980 CATAGTATCG
*
150529990 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
150530005 TATTCTT-GA-TTCTT
1 TA-TCTTGGATTTCTT
*
150530019 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTT
150530034 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
150530049 TAT
1 TAT
150530052 TCGGTTTCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 1 0.03
13 2 0.05
14 9 0.23
15 22 0.56
16 5 0.13
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.60
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:150532475 original size:46 final size:46
Alignment explanation
Indices: 150532419--150532547 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
150532409 TGGTTGAGCA
* * *
150532419 TCCGAACTCGTTGAGTTGAGTCTGAGTTAACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
150532465 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
150532511 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
150532548 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:150534169 original size:40 final size:40
Alignment explanation
Indices: 150533995--150534166 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
150533985 GAGTCACGTA
* * *
150533995 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATCACTAGCACAAATG
* * * * *
150534034 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
* *
150534074 CCTTCGGGTCTTAACCCGGATATAA-CAACTCGCACGAATG
1 CCTTCGGGTCTTAACCCGGATATAATC-ACTAGCACAAATG
* *
150534114 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
*
150534154 CCTTCGGGACTTA
1 CCTTCGGGTCTTA
150534167 GCCGGGTATC
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.11
40 98 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
Found at i:150541055 original size:80 final size:80
Alignment explanation
Indices: 150540971--150541119 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
150540961 TATGGTAACC
* * * *
150540971 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
150541035 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
150541051 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
150541116 CCGG
66 CCGG
150541120 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:150541061 original size:40 final size:38
Alignment explanation
Indices: 150541012--150541119 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
150541002 ATCACGATTT
*
150541012 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
150541052 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
150541092 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
150541120 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:150550595 original size:38 final size:38
Alignment explanation
Indices: 150550460--150550606 Score: 140
Period size: 39 Copynumber: 3.8 Consensus size: 38
150550450 AATTGAATGA
* * * *
150550460 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
150550499 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
150550537 TACATCC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
150550576 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
150550607 ACGTGATATC
Statistics
Matches: 89, Mismatches: 11, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
37 5 0.06
38 26 0.29
39 38 0.43
40 20 0.22
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:150558446 original size:124 final size:122
Alignment explanation
Indices: 150558226--150558447 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
150558216 GAATTATGTG
* * * *
150558226 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
150558291 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
150558348 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
150558412 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
150558448 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:150558491 original size:40 final size:40
Alignment explanation
Indices: 150558406--150558556 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
150558396 AATTGAATGA
* * * *
150558406 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
150558446 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
150558487 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
150558526 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
150558557 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:150558570 original size:40 final size:40
Alignment explanation
Indices: 150558443--150558572 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
150558433 ATGCTGGAAA
* * *
150558443 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
150558483 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
150558523 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
150558563 TTATATCCGG
1 TTATATCCGG
150558573 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:150558571 original size:80 final size:80
Alignment explanation
Indices: 150558405--150558572 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
150558395 AAATTGAATG
* *
150558405 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
150558470 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
150558485 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
150558548 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
150558565 ATATCCGG
1 ATATCCGG
150558573 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:150560890 original size:24 final size:24
Alignment explanation
Indices: 150560799--150560883 Score: 127
Period size: 24 Copynumber: 3.5 Consensus size: 24
150560789 GAAATGATTT
* * *
150560799 TGGCATTATGTGTGTGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
150560823 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
150560847 TGGCACTATGTGTGC-AGATTTGTA
1 TGGCACTATGTGTGCGA-ATTTGTA
150560871 TGGCACTATGTGT
1 TGGCACTATGTGT
150560884 AGGGATTGGA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 1 0.02
24 56 0.98
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:150563147 original size:26 final size:26
Alignment explanation
Indices: 150563069--150563147 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
150563059 CATGGCTGCC
* * *
150563069 AGAACAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACT
150563095 AGATACAGATATTGTGGCAGAGCCACT
1 AGA-ACAGATATTGTGGCAGAGCCACT
* *
150563122 AGAACAGATAATGTGGCAAAGCCACT
1 AGAACAGATATTGTGGCAGAGCCACT
150563148 TAACAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 24 0.51
27 23 0.49
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACT
Found at i:150563162 original size:25 final size:26
Alignment explanation
Indices: 150563099--150563164 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
150563089 GTCACCAGAT
** *
150563099 ACAGATATTGTGGCAGAGCCACTAGA
1 ACAGATAACGTGGCAAAGCCACTAGA
* *
150563125 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGATAACGTGGCAAAGCCACTAGA
150563150 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
150563165 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACTAGA
Found at i:150563822 original size:27 final size:27
Alignment explanation
Indices: 150563791--150564274 Score: 637
Period size: 27 Copynumber: 18.0 Consensus size: 27
150563781 GGGGCAAAAT
* * *
150563791 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
150563818 AGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150563845 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
150563872 AGTAATTCTATCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
150563899 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150563926 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150563953 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
150563980 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
150564007 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
150564034 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150564061 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150564088 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
150564115 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150564142 GGTATTTCTACCCTACAACGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
150564169 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150564196 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
150564223 GGTATTTCTACCCTAAAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
150564250 GGTAATTCTACCCTAC-AGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
150564275 TAATAATTTT
Statistics
Matches: 404, Mismatches: 53, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 9 0.02
27 395 0.98
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Done.