Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 487 of 770
Found at i:150564380 original size:27 final size:27
Alignment explanation
Indices: 150564266--150564498 Score: 179
Period size: 27 Copynumber: 8.7 Consensus size: 27
150564256 TCTACCCTAC
** **
150564266 AGGGTATTTTAATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * **
150564293 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
150564320 GGGGTACTTT-GATAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
*
150564347 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
150564374 AGGGTATTTCAATAATTTTGCAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
*
150564401 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
150564428 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
150564455 AGGGTACTTT-GGTAATTTTACAACTAG
1 AGGGTA-TTTCGATAATTTTACAAATCG
150564482 -GGGTATTTC-ATTAATTT
1 AGGGTATTTCGA-TAATTT
150564499 GGTAAACTAA
Statistics
Matches: 168, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
25 3 0.02
26 15 0.09
27 146 0.87
28 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:150564389 original size:81 final size:81
Alignment explanation
Indices: 150564266--150564460 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
150564256 TCTACCCTAC
* * * * *
150564266 AGGGTATTTTAATAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAA-TCGGGGGTACTTT
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAATAATTCTGCAAACT-GAGGGTA-TTT
*
150564330 -GATAATTTTACAAGTCG
64 CGATAATTTTACAAATCG
* *** *
150564347 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTTCG
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAATAATTCTGCAAACTGAGGGTATTTCG
*
150564412 GTAATTTTACAAATCG
66 ATAATTTTACAAATCG
* *** *
150564428 AGGATATTTGGGTAATTTTATAAACCGAGGGTA
1 AGGGTATTTCAATAATTTTATAAATCGAGGGTA
150564461 CTTTGGTAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 3 0.03
81 90 0.96
82 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (81 bp):
AGGGTATTTCAATAATTTTATAAATCGAGGGTAAAACAATAATTCTGCAAACTGAGGGTATTTCG
ATAATTTTACAAATCG
Found at i:150566348 original size:17 final size:17
Alignment explanation
Indices: 150566306--150566348 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
150566296 TGCACTTAAG
*
150566306 CCATTCATGCATTTTAT
1 CCATTCATGCATTTGAT
*
150566323 -CATCCCATGCATTTGAT
1 CCAT-TCATGCATTTGAT
150566340 CCATTCATG
1 CCATTCATG
150566349 GACTAGCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
16 3 0.14
17 15 0.71
18 3 0.14
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (17 bp):
CCATTCATGCATTTGAT
Found at i:150567363 original size:22 final size:23
Alignment explanation
Indices: 150567338--150567396 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
150567328 CAACCAAATC
150567338 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
150567360 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
150567383 ACA-TCATCACATAT
1 A-ATTCAT-ACATAT
150567397 CTAAAACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 18 0.58
24 7 0.23
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:150571158 original size:20 final size:21
Alignment explanation
Indices: 150571133--150571172 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
150571123 CTCTTGAAAC
150571133 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACATGCCCGTGTGGA
150571153 AGGGCAACATGCCCGTGTGG
1 AGGGCAACATGCCCGTGTGG
150571173 TCATGCCGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTGGA
Found at i:150571805 original size:48 final size:46
Alignment explanation
Indices: 150571739--150571904 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 46
150571729 AAGCTGACGC
* * *
150571739 CATGTCCTAGACAGGTCTTACACTAGCTTGTATCTCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATCTC-CGAGGCTGATG
* ** * *
150571787 CATGTCCCAGACATGTCTTACACTAGCTCTCGC-CTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATCTC-CGAGGCTGATG
* * *
150571833 CATGTCCCAGACATGTCTTACACTGGCTCTCATACT--GTGGCTGAT-
1 CATGTCCCAGACATGTCTTACACTAGCT-TTAT-CTCCGAGGCTGATG
150571878 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
150571905 ACACAAATGA
Statistics
Matches: 97, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
45 26 0.27
46 42 0.43
47 2 0.02
48 27 0.28
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATCTCCGAGGCTGATG
Found at i:150571847 original size:46 final size:46
Alignment explanation
Indices: 150571783--150571904 Score: 169
Period size: 46 Copynumber: 2.7 Consensus size: 46
150571773 TCGCGAGGCC
*
150571783 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGCCT-CAAT-GCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT--CATACAATGGCT
* **
150571829 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATACTGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACAATGGCT
150571875 GAT-CATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
150571905 ACACAAATGA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
44 2 0.03
45 28 0.41
46 39 0.57
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACAATGGCT
Found at i:150577606 original size:37 final size:37
Alignment explanation
Indices: 150577556--150577633 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
150577546 TATAAAAGAA
150577556 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
150577593 GTCTTACCCGGTCATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
150577630 GTCT
1 GTCT
150577634 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.29
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:150577799 original size:49 final size:49
Alignment explanation
Indices: 150577744--150578005 Score: 470
Period size: 49 Copynumber: 5.3 Consensus size: 49
150577734 TTACATTGGT
*
150577744 CATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGC
1 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
* * *
150577793 CATTAGGCCTCATCACACATACATACACTTTCACGTTCATCACATTGGC
1 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
150577842 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
1 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
* *
150577891 CATTAGGCCTCATCACATATACATACACTTTCACGTTCATCACATCGGT
1 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
150577940 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
1 CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
150577989 CATTAGGCCTCATCACA
1 CATTAGGCCTCATCACA
150578006 CATATATATG
Statistics
Matches: 202, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 202 1.00
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (49 bp):
CATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGC
Found at i:150583691 original size:46 final size:45
Alignment explanation
Indices: 150583629--150583755 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 45
150583619 TATCTCGCGA
*
150583629 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGCTTCAA-T
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT--CAT-AAGT
* * *
150583676 -GCCGATGCATGTCCCAGACATGTCTTACATTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GT
*
150583721 GGCTGATGCATGTCCCAAACATGTCTTACACTAGC
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGC
150583756 ACACAAATGA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 1 0.01
46 64 0.93
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGT
Found at i:150588770 original size:24 final size:24
Alignment explanation
Indices: 150588740--150588958 Score: 366
Period size: 24 Copynumber: 9.1 Consensus size: 24
150588730 GAATGTGACT
* *
150588740 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
150588764 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150588788 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
* *
150588812 ATAGTGAATCGCACACCTAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150588836 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150588860 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150588884 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150588908 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150588932 ATAGTAAACCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150588956 ATA
1 ATA
150588959 TGGTCTTTGC
Statistics
Matches: 186, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 186 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:150596754 original size:24 final size:24
Alignment explanation
Indices: 150596724--150596965 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
150596714 GAATGTGACT
* *
150596724 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
150596748 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150596772 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150596796 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150596820 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150596844 ATAGT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150596867 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
150596891 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150596915 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150596939 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
150596963 ATA
1 ATA
150596966 TGGTCTTTGC
Statistics
Matches: 213, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
23 23 0.11
24 190 0.89
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:150596941 original size:119 final size:119
Alignment explanation
Indices: 150596730--150596965 Score: 418
Period size: 119 Copynumber: 2.0 Consensus size: 119
150596720 GACTATAGCA
*
150596730 AATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
* *
150596795 CATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGT
66 CATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGT
** *
150596849 AATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
150596914 CATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA
66 CATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA
150596966 TGGTCTTTGC
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 111 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (119 bp):
AATCGCACACATAGTGCCATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
CATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGT
Found at i:150600500 original size:40 final size:40
Alignment explanation
Indices: 150600434--150600584 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
150600424 AAATTGAATG
* * *
150600434 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
150600473 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
150600513 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
150600553 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
150600585 ACATGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:150608488 original size:40 final size:40
Alignment explanation
Indices: 150608429--150608570 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
150608419 AAATTGAATG
* * *
150608429 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
150608469 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
150608509 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
150608549 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
150608571 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:150608594 original size:40 final size:39
Alignment explanation
Indices: 150608467--150608596 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
150608457 ATGCTGGAAA
* * *
150608467 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
150608508 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
150608546 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
150608587 TTATATCCGG
1 TTATATCCGG
150608597 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:150618080 original size:7 final size:7
Alignment explanation
Indices: 150618070--150618095 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
150618060 AAGAGAGAAT
150618070 GATGAGG
1 GATGAGG
150618077 GATGAGG
1 GATGAGG
150618084 GATGAGG
1 GATGAGG
150618091 GATGA
1 GATGA
150618096 TTAGGAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.54, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:150618205 original size:40 final size:40
Alignment explanation
Indices: 150618150--150618230 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
150618140 TAGTAGTTGA
* *
150618150 TATACACTCGTTCATCATTTGAAAGAAAGCTTCTTTTGCC
1 TATACACCCGTTCATCATTTAAAAGAAAGCTTCTTTTGCC
* *
150618190 TATACACCCGTTCATCATTTAAAAGAAGGCTTTTTTTGCC
1 TATACACCCGTTCATCATTTAAAAGAAAGCTTCTTTTGCC
150618230 T
1 T
150618231 CCTCACCTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (40 bp):
TATACACCCGTTCATCATTTAAAAGAAAGCTTCTTTTGCC
Found at i:150626718 original size:27 final size:27
Alignment explanation
Indices: 150626688--150626770 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
150626678 ATTCGGCCTT
150626688 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
150626715 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
150626737 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
150626764 ATCACAT
1 ATCACAT
150626771 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:150626718 original size:49 final size:49
Alignment explanation
Indices: 150626650--150626820 Score: 303
Period size: 49 Copynumber: 3.5 Consensus size: 49
150626640 TATCACAGTT
*
150626650 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
150626699 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
150626748 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
150626795 ATACACTTTCACATTCATCACATTGG
1 ATACACTTTCACATTCATCACATTGG
150626821 ATCCTAAATC
Statistics
Matches: 120, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 30 0.25
49 88 0.73
50 2 0.02
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:150629525 original size:23 final size:24
Alignment explanation
Indices: 150629495--150629543 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
150629485 TGTGTCTAGG
150629495 CCGTGTGTGACACAC-GTCAGCCC
1 CCGTGTGTGACACACGGTCAGCCC
*
150629518 CCGTGTGTGACACACGGTCAGTCC
1 CCGTGTGTGACACACGGTCAGCCC
150629542 CC
1 CC
150629544 ATGGGCGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.16, C:0.39, G:0.27, T:0.18
Consensus pattern (24 bp):
CCGTGTGTGACACACGGTCAGCCC
Found at i:150637745 original size:80 final size:80
Alignment explanation
Indices: 150637612--150637819 Score: 366
Period size: 80 Copynumber: 2.6 Consensus size: 80
150637602 AGCTTGATAC
*
150637612 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
150637677 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
*
150637692 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
150637757 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
*
150637772 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCCGGGCTAA
150637820 ACTCCGAAGA
Statistics
Matches: 123, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
79 8 0.07
80 115 0.93
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:150637810 original size:40 final size:40
Alignment explanation
Indices: 150637612--150637796 Score: 352
Period size: 40 Copynumber: 4.6 Consensus size: 40
150637602 AGCTTGATAC
*
150637612 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
150637652 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
150637692 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
150637732 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
150637772 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
150637797 AGCTAGTAGC
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:150641812 original size:24 final size:24
Alignment explanation
Indices: 150641780--150641962 Score: 312
Period size: 24 Copynumber: 7.6 Consensus size: 24
150641770 TATCTCAAAT
*
150641780 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
150641804 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
150641828 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
150641852 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
150641876 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
150641900 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
150641924 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
150641948 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
150641963 ACATAATAAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:150641975 original size:48 final size:48
Alignment explanation
Indices: 150641780--150641984 Score: 252
Period size: 48 Copynumber: 4.3 Consensus size: 48
150641770 TATCTCAAAT
* * * *
150641780 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTCACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACAT-AATATA
** * *
150641828 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
** *
150641876 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
* * *
150641924 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ACATAATATA
150641972 GCACTATGTGTGC
1 GCACTATGTGTGC
150641985 CACATTCGGT
Statistics
Matches: 147, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
48 140 0.95
49 7 0.05
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:150641976 original size:72 final size:72
Alignment explanation
Indices: 150641780--150641984 Score: 272
Period size: 72 Copynumber: 2.8 Consensus size: 72
150641770 TATCTCAAAT
* *
150641780 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGCGA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATAGGCACTATGTGTGCGA
*
150641843 TTTACTATG
64 TTTACTATA
** *
150641852 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATGGCACTATGTGTGCGAT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-GGCACTATGTGTGCGAT
150641916 TTACTATA
65 TTACTATA
* * * *
150641924 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGC
150641985 CACATTCGGT
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
69 1 0.01
70 1 0.01
72 109 0.94
73 5 0.04
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAGGCACTATGTGTGCGATT
TACTATA
Found at i:150655702 original size:30 final size:29
Alignment explanation
Indices: 150655608--150655709 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
150655598 TATAGTGAAT
* * *
150655608 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
150655637 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
150655665 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
150655695 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
150655710 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:150663560 original size:30 final size:29
Alignment explanation
Indices: 150663466--150663567 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
150663456 TATAGTGAAT
* * *
150663466 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
150663495 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
150663523 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
150663553 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
150663568 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:150665375 original size:124 final size:124
Alignment explanation
Indices: 150665153--150665377 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
150665143 GAATTATGTG
* * * * * * *
150665153 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
150665218 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
150665277 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
150665342 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
150665378 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:150665499 original size:40 final size:40
Alignment explanation
Indices: 150665372--150665501 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
150665362 TTGCTGGAAA
* * *
150665372 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
150665412 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
150665452 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
150665492 TTATATCCGG
1 TTATATCCGG
150665502 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:150668008 original size:40 final size:40
Alignment explanation
Indices: 150667948--150668129 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
150667938 TATTCGAATG
* *
150667948 ATATCCGAGCTAAGTGCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
150667988 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
150668028 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
150668068 ATATCCGGGCTAAGACCCGAATGTATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
150668108 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
150668130 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:150668396 original size:22 final size:22
Alignment explanation
Indices: 150668356--150668397 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
150668346 GAATATGCAT
*
150668356 ATATGAAATTATTCATTTAGCC
1 ATATGAAATTATACATTTAGCC
150668378 ATATGAACATTATAC-TTTAG
1 ATATGAA-ATTATACATTTAG
150668398 TCGTAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (22 bp):
ATATGAAATTATACATTTAGCC
Found at i:150670803 original size:8 final size:8
Alignment explanation
Indices: 150670787--150670822 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
150670777 GACATCCCAA
150670787 TTTTCGGC
1 TTTTCGGC
*
150670795 TTTTTGGC
1 TTTTCGGC
150670803 TTTTCGGC
1 TTTTCGGC
*
150670811 TTTTTGGC
1 TTTTCGGC
150670819 TTTT
1 TTTT
150670823 GCTATTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.17, G:0.22, T:0.61
Consensus pattern (8 bp):
TTTTCGGC
Found at i:150670808 original size:16 final size:16
Alignment explanation
Indices: 150670787--150670822 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
150670777 GACATCCCAA
150670787 TTTTCGGCTTTTTGGC
1 TTTTCGGCTTTTTGGC
150670803 TTTTCGGCTTTTTGGC
1 TTTTCGGCTTTTTGGC
150670819 TTTT
1 TTTT
150670823 GCTATTACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.17, G:0.22, T:0.61
Consensus pattern (16 bp):
TTTTCGGCTTTTTGGC
Found at i:150671515 original size:15 final size:16
Alignment explanation
Indices: 150671495--150671524 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
150671485 GAAAATTACC
150671495 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
150671510 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
150671525 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:150675555 original size:15 final size:16
Alignment explanation
Indices: 150675537--150675570 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
150675527 TTCTTCTCCC
150675537 TTTCTTTC-TTTCTTT
1 TTTCTTTCTTTTCTTT
150675552 TTTCTTTCTTTTCTTT
1 TTTCTTTCTTTTCTTT
150675568 TTT
1 TTT
150675571 TAATTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTCTTTTCTTT
Found at i:150675613 original size:3 final size:3
Alignment explanation
Indices: 150675607--150675681 Score: 150
Period size: 3 Copynumber: 25.0 Consensus size: 3
150675597 TTTTTTTCCT
150675607 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
150675655 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
150675682 ACTTTATATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:150682122 original size:2 final size:2
Alignment explanation
Indices: 150682115--150682153 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
150682105 TCATGACATG
150682115 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
150682154 GACTAGTCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:150686827 original size:27 final size:27
Alignment explanation
Indices: 150686797--150686889 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
150686787 TAGATAACTT
*
150686797 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCAAAATACCCCTATAAG
* *
150686824 GTAGAAATACCAAAATACCCCTATAGG
1 GTAGAATTACCAAAATACCCCTATAAG
* * * **
150686851 GTAGAATTACCGAGATACCCTTATGGG
1 GTAGAATTACCAAAATACCCCTATAAG
*
150686878 GTAAAATTACCA
1 GTAGAATTACCA
150686890 TTTTGCCCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCCTATAAG
Found at i:150686898 original size:27 final size:27
Alignment explanation
Indices: 150686868--150686924 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
150686858 TACCGAGATA
*
150686868 CCCTTATGGG-GTAAAATTACCATTTTG
1 CCCTTA-GGGTGTAAAATGACCATTTTG
* *
150686895 CCCTTAGGGTGTTAAATGACTATTTTG
1 CCCTTAGGGTGTAAAATGACCATTTTG
150686922 CCC
1 CCC
150686925 CTCGTGCGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
CCCTTAGGGTGTAAAATGACCATTTTG
Found at i:150687583 original size:27 final size:26
Alignment explanation
Indices: 150687539--150687590 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
150687529 CTCGCTACAA
*
150687539 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
150687566 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
150687591 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:150693271 original size:48 final size:46
Alignment explanation
Indices: 150693170--150693276 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 46
150693160 TTATTTGTGT
*
150693170 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCACATTATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGA-CACATTAGAAGA
* *
150693216 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-A-GCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGACACATT-AGA--AGA
150693264 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
150693277 ATGGGCCTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
45 4 0.08
46 13 0.25
47 15 0.29
48 20 0.38
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGACACATTAGAAGA
Found at i:150693395 original size:125 final size:124
Alignment explanation
Indices: 150693173--150693401 Score: 309
Period size: 125 Copynumber: 1.8 Consensus size: 124
150693163 TTTGTGTGCT
*
150693173 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATAAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATGAT-AGAGCCAGTGTAAGACCATGTCTGG
**
150693238 GACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGGGCCTCTAGATGTAAGCC
65 GACATGGCATCAGCACGGAGACGAGAGCTAGTGTAAGACATGGGCCTCTAGATGTAAGCC
** * * *
150693298 AGTGTAAGACATGTCTGGGACATGCATCGACTGCGA-GAT-GTGTCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATGATAGAGCCAGTGTAAGACCATGTCTGG
* * *
150693361 GACATGGCATCGGCACGGATATGTGAGAGCTAGTGTAAGAC
65 GACATGGCATCAGCACGGAGA--CGAGAGCTAGTGTAAGAC
150693402 CATGTCTGGG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
123 38 0.42
125 51 0.57
126 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (124 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATGATAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCAGCACGGAGACGAGAGCTAGTGTAAGACATGGGCCTCTAGATGTAAGCC
Found at i:150705295 original size:13 final size:15
Alignment explanation
Indices: 150705266--150705297 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
150705256 AAAATTTGTG
150705266 AAATGTATGTGCTAT
1 AAATGTATGTGCTAT
150705281 AAATGTA-GT-CTAT
1 AAATGTATGTGCTAT
150705294 AAAT
1 AAAT
150705298 TTTAGTTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 2 0.12
15 7 0.41
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (15 bp):
AAATGTATGTGCTAT
Found at i:150708645 original size:19 final size:19
Alignment explanation
Indices: 150708617--150708655 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
150708607 AGAGCAAAAG
150708617 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
150708635 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
150708655 A
1 A
150708656 GTACAAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.51, C:0.18, G:0.28, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:150710026 original size:16 final size:16
Alignment explanation
Indices: 150709993--150710029 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
150709983 GTAGATCGGC
*
150709993 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATACCG
*
150710009 AAAAGCTGAAATATCG
1 AAAAGCTGAAATACCG
150710025 AAAAG
1 AAAAG
150710030 TCGAAAAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:150710035 original size:16 final size:17
Alignment explanation
Indices: 150709993--150710047 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
150709983 GTAGATCGGC
* *
150709993 AAAAG-CTGAAATGCCG
1 AAAAGTCTGAAAAGTCG
150710009 AAAAG-CTGAAATA-TCG
1 AAAAGTCTGAAA-AGTCG
150710025 AAAAGTC-GAAAAGTCG
1 AAAAGTCTGAAAAGTCG
150710041 AAAAGTC
1 AAAAGTC
150710048 AAAAGTTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
15 1 0.03
16 32 0.94
17 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (17 bp):
AAAAGTCTGAAAAGTCG
Found at i:150710053 original size:7 final size:8
Alignment explanation
Indices: 150710022--150710053 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
150710012 AGCTGAAATA
150710022 TCGAAAAG
1 TCGAAAAG
150710030 TCGAAAAG
1 TCGAAAAG
150710038 TCGAAAAG
1 TCGAAAAG
150710046 TC-AAAAG
1 TCGAAAAG
150710053 T
1 T
150710054 TTGGCTACGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.50, C:0.12, G:0.22, T:0.16
Consensus pattern (8 bp):
TCGAAAAG
Found at i:150710310 original size:28 final size:28
Alignment explanation
Indices: 150710266--150710377 Score: 104
Period size: 28 Copynumber: 4.0 Consensus size: 28
150710256 CATGACTATA
*
150710266 AATGTGATTTGGCCCTAAT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
150710294 AATGTGATTTGGGCCTAATGGGCACCATA--
1 AATGTGA-TTGGGCCTAATGGG--CCATATG
* * *
150710323 AATGTGATTAGGCTTAATGGGTCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * *
150710351 AAAGAGATTGGGCCTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
150710378 ACAGGTATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.06
28 51 0.74
29 9 0.13
31 5 0.07
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:150710351 original size:57 final size:56
Alignment explanation
Indices: 150710263--150710372 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 56
150710253 AAGCATGACT
* * *
150710263 ATAAATGTGATTTGGCCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCACC
1 ATAAATGTGATTAGGCCCTAATGGCCATATGAAAGAGA-TTGGGCCTAATGGGCACC
* * *
150710320 ATAAATGTGATTAGG-CTTAATGGGTCATATGAAAGAGATTGGGCCTAGTGGGC
1 ATAAATGTGATTAGGCCCTAAT-GGCCATATGAAAGAGATTGGGCCTAATGGGC
150710373 CATATACAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 19 0.41
57 27 0.59
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (56 bp):
ATAAATGTGATTAGGCCCTAATGGCCATATGAAAGAGATTGGGCCTAATGGGCACC
Found at i:150714082 original size:17 final size:17
Alignment explanation
Indices: 150714060--150714095 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
150714050 GTGTTTGGGG
*
150714060 TATCACTAATGGAGGGT
1 TATCACTAATGAAGGGT
150714077 TATCACTAATGAAGGGT
1 TATCACTAATGAAGGGT
150714094 TA
1 TA
150714096 AGGAGGCGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (17 bp):
TATCACTAATGAAGGGT
Found at i:150717936 original size:16 final size:16
Alignment explanation
Indices: 150717915--150717946 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
150717905 GTTGTAACGC
150717915 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
150717931 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
150717947 TCTCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:150719632 original size:20 final size:20
Alignment explanation
Indices: 150719607--150719645 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
150719597 TTAAAAAGGT
* *
150719607 AAATAAAGATAAAAGTAAAC
1 AAATAAAAATAAAAATAAAC
150719627 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
150719646 GTAAAGCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAC
Found at i:150727376 original size:150 final size:150
Alignment explanation
Indices: 150727178--150727480 Score: 552
Period size: 150 Copynumber: 2.0 Consensus size: 150
150727168 CACTAGTTTA
*
150727178 TAGCAAGACCAGAATGTCAAACCCACAGGAACTAAAAGTACTAGTATTAACTTTCTTTTTATTAT
1 TAGCAAGACCAGAATGTCAAACCCACAGGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
* * *
150727243 CTAGCCTAAAAATAAGAGGATTTACTTTATCTAAACTAATTAACTAAACTAAGAATGCACAATAA
66 CTAGCCTAAAAAAAAGAGGATTTACTTTATCTAAACTAATTAACCAAACTAAGAATGCACAAGAA
150727308 GAAAATTGGGGAATTACTCT
131 GAAAATTGGGGAATTACTCT
*
150727328 TAGCAAGACCAGAATGTCGAACCCACAGGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
1 TAGCAAGACCAGAATGTCAAACCCACAGGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
*
150727393 CTAGCCTAAAAAAAAGGGGATTTACTTTATCTAAACTAATTAACCAAACTAAGAATGCACAAGAA
66 CTAGCCTAAAAAAAAGAGGATTTACTTTATCTAAACTAATTAACCAAACTAAGAATGCACAAGAA
150727458 GAAAATTGGGGAATTACTCT
131 GAAAATTGGGGAATTACTCT
150727478 TAG
1 TAG
150727481 GAAAACTGAT
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (150 bp):
TAGCAAGACCAGAATGTCAAACCCACAGGAACTAAAAGTACTACTATTAACTTTCTTTTTATTAT
CTAGCCTAAAAAAAAGAGGATTTACTTTATCTAAACTAATTAACCAAACTAAGAATGCACAAGAA
GAAAATTGGGGAATTACTCT
Found at i:150730321 original size:42 final size:42
Alignment explanation
Indices: 150730264--150730373 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
150730254 ACGGGCAGAG
* * *
150730264 ACACAGGCATGTGTCTCAGCCGTGTGTGCTACACGGCCTAGA
1 ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGACCTAGA
*
150730306 ACACGGGCGTCTGTCTCAGCCGTGTGTGCTACACGACCTAGA
1 ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGACCTAGA
* * *
150730348 ACACAGGCGTGTGTCTTAGCCATGTG
1 ACACAGGCGTCTGTCTCAGCCGTGTG
150730374 AAACCTGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (42 bp):
ACACAGGCGTCTGTCTCAGCCGTGTGTGCTACACGACCTAGA
Found at i:150738350 original size:40 final size:40
Alignment explanation
Indices: 150738305--150738486 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
150738295 ATAACCACAA
* *
150738305 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
150738345 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
150738385 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
150738425 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* *
150738465 GCATAAATGCCTTCGGGGCTTA
1 GCACAAATGCCTTCGGGTCTTA
150738487 GCCCAGGTAT
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 127 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:150740947 original size:52 final size:52
Alignment explanation
Indices: 150740891--150741014 Score: 140
Period size: 52 Copynumber: 2.4 Consensus size: 52
150740881 TGTCGCAGCA
* * * * *
150740891 TGACTCTTTGTCTTAAGCTTGTCGTAACCTCAAGGTTTTTCTCATCGCGATG
1 TGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCATCACGATG
* * * **
150740943 TGACTCTCTGTCTTGAGCTCGTTGCGACCTCAAGGTATTTCTTGTCACGATG
1 TGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCATCACGATG
* *
150740995 TGACTCTCTATCTTGAGCTC
1 TGACTCTCTGTCTTAAGCTC
150741015 ACCACAACGT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (52 bp):
TGACTCTCTGTCTTAAGCTCGTCGCAACCTCAAGGTATTTCTCATCACGATG
Found at i:150743156 original size:24 final size:24
Alignment explanation
Indices: 150743129--150743249 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
150743119 GCTTATTATG
*
150743129 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
150743153 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
150743177 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
150743201 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
150743225 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
150743249 A
1 A
150743250 CTTTCTACCC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:150755599 original size:48 final size:48
Alignment explanation
Indices: 150755527--150755893 Score: 252
Period size: 48 Copynumber: 7.7 Consensus size: 48
150755517 GGGTAAGATA
* * *
150755527 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACACATTAAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATTGAAG
* * * *
150755575 TCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAT-T-GAAG
* ** * * **
150755625 CCGAT-ACATGTCATAGACATGGTCTTACACTGGCTTTCATCTATCGGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-C-ATTGAAG
* * *
150755674 CCGATGCCATGTCCCAAACATGGTCTTACACT-G---ACACATCTCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAT-TGAAG
* * * * * * * *
150755719 -CGATGCCATGTTCCAAACATGGAT-TTACACTAGTTTTTATATCTCGAGG
1 CCGATGCCATGTCCCAGACATGG-TCTTACACTGGCTCTCACAT-T-GAAG
* * ***
150755768 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCT-TGTTTGGATA-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATT-GA-AG
* * * **
150755816 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATTGAAG
150755864 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
150755894 AGCACACATA
Statistics
Matches: 252, Mismatches: 50, Indels: 36
0.75 0.15 0.11
Matches are distributed among these distances:
44 30 0.12
45 4 0.02
46 12 0.05
47 13 0.05
48 88 0.35
49 43 0.17
50 60 0.24
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATTGAAG
Found at i:150755650 original size:49 final size:50
Alignment explanation
Indices: 150755576--150755708 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 50
150755566 ACATTAAAGT
* *
150755576 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-GC
1 CGATGACATGTCACAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * * *
150755626 CGAT-ACATGTCATAGACATGGTCTTACACTGGCTTTCATCTATCGGTGC
1 CGATGACATGTCACAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * *
150755675 CGATGCCATGTCCCAAACATGGTCTTACACTGAC
1 CGATGACATGTCACAGACATGGTCTTACACTGAC
150755709 ACATCTCAAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 41 0.59
50 28 0.40
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
CGATGACATGTCACAGACATGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:150755847 original size:98 final size:94
Alignment explanation
Indices: 150755719--150755896 Score: 232
Period size: 98 Copynumber: 1.9 Consensus size: 94
150755709 ACATCTCAAG
* * * * * *
150755719 CGATGCCATGTTCCAAACATGGATTTACACTAGTTTTTATATCTCGAGGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAAACATGGATTTACACTAGCTCTCATA-AT-GAGGCCGATG-CATGTCCCA
150755784 GACATGGTCTTACACTAGCTCTTGTTTGGATAC
63 GACAT-GTCTTACACTAGCTCTTGTTTGGATAC
* *
150755817 CGATGCCATGTCCCAAACATGG-TCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGAT-TTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGA
150755881 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
150755897 ACACATATCA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
94 13 0.18
95 13 0.18
96 9 0.13
97 2 0.03
98 34 0.48
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (94 bp):
CGATGCCATGTCCCAAACATGGATTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTTGTTTGGATAC
Found at i:150758433 original size:84 final size:79
Alignment explanation
Indices: 150758309--150758502 Score: 230
Period size: 84 Copynumber: 2.4 Consensus size: 79
150758299 AACACAAAGT
* *
150758309 CTGCGGGACTTTAAGCCCGGAT--ATAGTACCAGCAATAAGCCTGCAAGACTTAACCCGGATATA
1 CTGCGGGA-TTTAA-CCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACCCGG----A
* *
150758372 TATATATTACTAGCACGAAGC
60 TACATATTACCAGCAC-AAGC
* *** *
150758393 CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATACATA
1 CTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACCCGGATACATA
150758458 TTACCAGCACAAGC
66 TTACCAGCACAAGC
150758472 CTGCGGGATTTAACCCGGATACATATTACCA
1 CTGCGGGATTTAACCCGGATACATATTACCA
150758503 TATATCGACT
Statistics
Matches: 99, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
79 35 0.35
80 15 0.15
82 7 0.07
83 5 0.05
84 37 0.37
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (79 bp):
CTGCGGGATTTAACCCGGATACATATTACCAGCAAGAAGCCTGCAAGACTTAACCCGGATACATA
TTACCAGCACAAGC
Found at i:150758483 original size:39 final size:40
Alignment explanation
Indices: 150758309--150758502 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
150758299 AACACAAAGT
* **
150758309 CTGCGGGACTTTAAGCCCGGAT--ATAGTACCAGCAATAAGC
1 CTGCGGGA-TTTAA-CCCGGATACATATTACCAGCACGAAGC
** * * *
150758349 CTGCAAGACTTAACCCGGATATATATATATTACTAGCACGAAGC
1 CTGCGGGATTTAACCCGG----ATACATATTACCAGCACGAAGC
150758393 CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGC
*
150758433 CTGTGGGATTTAACCCGGATACATATTACCAGCAC-AAGC
1 CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGC
150758472 CTGCGGGATTTAACCCGGATACATATTACCA
1 CTGCGGGATTTAACCCGGATACATATTACCA
150758503 TATATCGACT
Statistics
Matches: 134, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
38 5 0.04
39 38 0.28
40 60 0.45
42 2 0.01
44 29 0.22
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
CTGCGGGATTTAACCCGGATACATATTACCAGCACGAAGC
Found at i:150760497 original size:40 final size:40
Alignment explanation
Indices: 150760442--150760648 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
150760432 TGAATGATAC
* * *
150760442 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
150760482 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
150760522 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
150760562 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
150760601 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
150760641 CC-GGCTAA
1 CCGGGCTAA
150760649 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 41 0.28
40 105 0.71
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:150760657 original size:79 final size:79
Alignment explanation
Indices: 150760438--150760648 Score: 323
Period size: 79 Copynumber: 2.7 Consensus size: 79
150760428 CATTTGAATG
* * * *
150760438 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCC-GGCTAAGACCCGAAGGCA
150760503 TTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGCT
* * * *
150760518 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCGGGCTAAGACCCGAAGGCAT
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCAT
150760583 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
* *
150760597 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAA
150760649 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
79 79 0.68
80 38 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:150767966 original size:40 final size:40
Alignment explanation
Indices: 150767911--150768118 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
150767901 TGAATGATAC
* * *
150767911 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
150767951 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
150767991 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
150768031 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
150768071 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
150768111 CC-GGCTAA
1 CCGGGCTAA
150768119 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 5 0.03
40 143 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:150768044 original size:80 final size:80
Alignment explanation
Indices: 150767907--150768118 Score: 329
Period size: 80 Copynumber: 2.7 Consensus size: 80
150767897 CATTTGAATG
* * *
150767907 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
150767971 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
150767987 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
150768052 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
150768067 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
150768119 ATTCCGAAGA
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
79 6 0.05
80 113 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:150770820 original size:40 final size:40
Alignment explanation
Indices: 150770765--150770974 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
150770755 AACATTGGAA
150770765 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150770805 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150770845 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
150770885 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
150770924 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
150770965 CTATATCCGG
1 ATATATCCGG
150770975 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:150778955 original size:40 final size:40
Alignment explanation
Indices: 150778900--150779069 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
150778890 AACATTGGAA
150778900 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
150778940 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
150778980 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
150779019 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
150779060 CTATATCCGG
1 ATATATCCGG
150779070 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:150784450 original size:40 final size:39
Alignment explanation
Indices: 150784339--150784490 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
150784329 ATAAGCATGT
* * *
150784339 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
*
150784379 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCG-CTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTA
* *** *
150784419 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACGACTA
* * *
150784459 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
150784491 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.97
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACGACTA
Found at i:150784473 original size:80 final size:80
Alignment explanation
Indices: 150784339--150784490 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
150784329 ATAAGCATGT
* *
150784339 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
150784404 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
150784419 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
150784482 CCCGGATAT
64 CCCGGATAT
150784491 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:150802619 original size:2 final size:2
Alignment explanation
Indices: 150802614--150802646 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
150802604 TTACACACAC
150802614 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
150802647 GTTTTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:150803795 original size:42 final size:42
Alignment explanation
Indices: 150803749--150803844 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
150803739 AGAAGCAGAA
**
150803749 TTTGAGCTGGTGTATTTGTAAAAGGCCTTAGG-CCTAGCAGGC
1 TTTGAGCCAGTGTATTTGTAAAAGGCCTT-GGCCCTAGCAGGC
** *
150803791 TTTGAGCCAGTGTATTTGTATTAGGCCTTGGCCCTAGCAGGT
1 TTTGAGCCAGTGTATTTGTAAAAGGCCTTGGCCCTAGCAGGC
*
150803833 TTTGAGTCAGTG
1 TTTGAGCCAGTG
150803845 AATAATTATA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.04
42 45 0.96
ACGTcount: A:0.19, C:0.17, G:0.30, T:0.34
Consensus pattern (42 bp):
TTTGAGCCAGTGTATTTGTAAAAGGCCTTGGCCCTAGCAGGC
Found at i:150813608 original size:22 final size:23
Alignment explanation
Indices: 150813578--150813621 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
150813568 ACAGATACGC
*
150813578 GAATTTCC-ACCCAAACACACCA
1 GAATATCCAACCCAAACACACCA
150813600 GAATATCCAACCCAAACACACC
1 GAATATCCAACCCAAACACACC
150813622 CGGAATATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.43, C:0.41, G:0.05, T:0.11
Consensus pattern (23 bp):
GAATATCCAACCCAAACACACCA
Found at i:150816902 original size:39 final size:39
Alignment explanation
Indices: 150816821--150816983 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
150816811 TAAGGTAACC
* *
150816821 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
150816861 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
150816900 CGCACCATTGCCTTCGGGCTTAGCCCGAATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
150816939 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
150816978 CGCACA
1 CGCACA
150816984 TTCATACACA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:150824723 original size:49 final size:44
Alignment explanation
Indices: 150824638--150824806 Score: 173
Period size: 39 Copynumber: 4.0 Consensus size: 44
150824628 TGGTAACCCG
* *
150824638 CACAAATGCCTTCGGGACTTAACCCGG--ATCACAACTCGCACAACA
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCAC-A-A
150824683 TCAAGCAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG-----
1 -C-A-CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAA
150824725 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG-----
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAA
*
150824764 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
150824807 TTCATACACA
Statistics
Matches: 112, Mismatches: 3, Indels: 19
0.84 0.02 0.14
Matches are distributed among these distances:
39 75 0.67
40 1 0.01
41 1 0.01
46 1 0.01
47 10 0.09
48 13 0.12
49 11 0.10
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (44 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAA
Found at i:150824732 original size:39 final size:39
Alignment explanation
Indices: 150824688--150824806 Score: 229
Period size: 39 Copynumber: 3.1 Consensus size: 39
150824678 CAACATCAAG
150824688 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
150824727 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
150824766 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
150824805 CA
1 CA
150824807 TTCATACACA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (39 bp):
CAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:150836663 original size:20 final size:21
Alignment explanation
Indices: 150836640--150836679 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
150836630 ATTATTCATA
*
150836640 ATTTGA-CTCCACTATTTACG
1 ATTTGACCCCCACTATTTACG
150836660 ATTTGATCCCCCACTATTTA
1 ATTTGA-CCCCCACTATTTA
150836680 TAGGACTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.25, C:0.28, G:0.07, T:0.40
Consensus pattern (21 bp):
ATTTGACCCCCACTATTTACG
Found at i:150838779 original size:22 final size:24
Alignment explanation
Indices: 150838737--150838795 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 24
150838727 AGAATTGAAT
*
150838737 TATAATTTT-TTAAAAAGTTAA-A
1 TATAATTTTATTATAAAGTTAATA
* *
150838759 TATAATTTTATTATATA-TTAATT
1 TATAATTTTATTATAAAGTTAATA
*
150838782 TATGATTTTATTAT
1 TATAATTTTATTAT
150838796 GTTCGAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (24 bp):
TATAATTTTATTATAAAGTTAATA
Found at i:150842533 original size:31 final size:31
Alignment explanation
Indices: 150842498--150842565 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
150842488 TCCCTATTTT
* *
150842498 GGAGAAAAAGAAACCTGAAACTCTATAACTA
1 GGAGAAAAAGAAACCCGAAACTCCATAACTA
** *
150842529 GGAG-AAACTAAACCCGAAACTCCATAGCTA
1 GGAGAAAAAGAAACCCGAAACTCCATAACTA
150842559 GGAGAAA
1 GGAGAAA
150842566 CTAAGGTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 25 0.81
31 6 0.19
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.13
Consensus pattern (31 bp):
GGAGAAAAAGAAACCCGAAACTCCATAACTA
Found at i:150842548 original size:30 final size:30
Alignment explanation
Indices: 150842508--150842569 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
150842498 GGAGAAAAAG
* *
150842508 AAACCTGAAACTCTATAACTAGGAGAAACT
1 AAACCCGAAACTCCATAACTAGGAGAAACT
*
150842538 AAACCCGAAACTCCATAGCTAGGAGAAACT
1 AAACCCGAAACTCCATAACTAGGAGAAACT
150842568 AA
1 AA
150842570 GGTTTGGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.16
Consensus pattern (30 bp):
AAACCCGAAACTCCATAACTAGGAGAAACT
Found at i:150849167 original size:2 final size:2
Alignment explanation
Indices: 150849160--150849199 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
150849150 TATCTAACTC
150849160 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
150849200 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:150852174 original size:39 final size:40
Alignment explanation
Indices: 150852051--150852267 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
150852041 TGGATGATAA
*
150852051 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
150852092 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
150852132 CCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
150852171 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
150852211 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
150852250 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
150852268 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 15 0.09
39 51 0.32
40 66 0.41
41 24 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:150852193 original size:79 final size:80
Alignment explanation
Indices: 150852051--150852267 Score: 284
Period size: 79 Copynumber: 2.7 Consensus size: 80
150852041 TGGATGATAA
*
150852051 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCAT
* *
150852114 TTGTGCGAGTTATTACAT
63 TGGTGCGAGTTACTACAT
150852132 CCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
*
150852196 TGCGAGTTACTATAT
66 TGCGAGTTACTACAT
* * * *
150852211 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
150852268 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
78 21 0.17
79 76 0.61
81 25 0.20
82 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACAT
Found at i:150862294 original size:13 final size:12
Alignment explanation
Indices: 150862271--150862302 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
150862261 AAATATATTT
150862271 ATATAATAAAAC
1 ATATAATAAAAC
150862283 ATATAATAAAA-
1 ATATAATAAAAC
150862294 ATAT-ATAAA
1 ATATAATAAA
150862303 TAAGATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.25
11 4 0.20
12 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
ATATAATAAAAC
Found at i:150862382 original size:10 final size:9
Alignment explanation
Indices: 150862367--150862420 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
150862357 TACATCAATA
150862367 AAATATAAT
1 AAATATAAT
150862376 GAAATATAAT
1 -AAATATAAT
150862386 AAATATATAT
1 AAATATA-AT
150862396 ATAA-ATAAT
1 A-AATATAAT
150862405 -AATAATAAT
1 AAAT-ATAAT
150862414 -AATATAA
1 AAATATAA
150862421 GTATTTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 2 0.05
8 4 0.10
9 17 0.43
10 15 0.38
11 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (9 bp):
AAATATAAT
Found at i:150862386 original size:15 final size:15
Alignment explanation
Indices: 150862363--150862508 Score: 58
Period size: 16 Copynumber: 9.9 Consensus size: 15
150862353 GAAATACATC
*
150862363 AATAAAATATAATGA-
1 AATATAATATAAT-AT
150862378 AATATAATA-AATAT
1 AATATAATATAATAT
150862392 ATATATAA-ATAATAAT
1 A-ATATAATATAAT-AT
150862408 AATAATAATATAAGTAT
1 AAT-ATAATATAA-TAT
** * *
150862425 TTTTTTATATAA-A-
1 AATATAATATAATAT
* **
150862438 AATGT-ATACCATAT
1 AATATAATATAATAT
*
150862452 AATAAAATATAAATAT
1 AATATAATAT-AATAT
* *
150862468 AATAGAATA-GATAT
1 AATATAATATAATAT
150862482 AATATAA-A-AATAT
1 AATATAATATAATAT
*
150862495 AAAAATAATATAAT
1 -AATATAATATAAT
150862509 GGATAGTAAA
Statistics
Matches: 98, Mismatches: 19, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
12 4 0.04
13 9 0.09
14 25 0.26
15 23 0.23
16 29 0.30
17 7 0.07
18 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (15 bp):
AATATAATATAATAT
Found at i:150862411 original size:21 final size:21
Alignment explanation
Indices: 150862354--150862420 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
150862344 TATGTAATAG
*
150862354 AAATACATCAATAAAATATA-AT
1 AAATA-AT-AATAATATATATAT
150862376 GAAAT-ATAATAAATATATATAT
1 -AAATAATAAT-AATATATATAT
150862398 AAATAATAATAATA-ATAATAT
1 AAATAATAATAATATAT-ATAT
150862419 AA
1 AA
150862421 GTATTTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
20 5 0.13
21 23 0.59
22 7 0.18
23 4 0.10
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (21 bp):
AAATAATAATAATATATATAT
Found at i:150864084 original size:23 final size:23
Alignment explanation
Indices: 150864051--150864099 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
150864041 TTATTATGCC
*
150864051 AATTTTATAAATAAAAATAA-AA
1 AATTTTATAAATAAAAAAAACAA
150864073 AATTTATATAAATAAAAAAAACAA
1 AATTT-TATAAATAAAAAAAACAA
150864097 AAT
1 AAT
150864100 AATTAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 5 0.21
23 14 0.58
24 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
AATTTTATAAATAAAAAAAACAA
Found at i:150866406 original size:68 final size:68
Alignment explanation
Indices: 150866297--150866433 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
150866287 ATTTATGCTT
150866297 AGTAAGTTTTAAGCAAAACAAAGTGTTCTCAATCACTATCATTGGTCATTCATTTCAACTGTTCG
1 AGTAAGTTTTAAGCAAAACAAAGTGTTCTCAATCACTATCATTGGTCATTCATTTCAACTGTTCG
150866362 ATG
66 ATG
150866365 AGTAAGTTTTAAGCAAAACAAAGTGTTCTCAATCACTATCATTGGTCATTCATTTCAACTGTTCG
1 AGTAAGTTTTAAGCAAAACAAAGTGTTCTCAATCACTATCATTGGTCATTCATTTCAACTGTTCG
150866430 ATG
66 ATG
150866433 A
1 A
150866434 AGTTAATCTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (68 bp):
AGTAAGTTTTAAGCAAAACAAAGTGTTCTCAATCACTATCATTGGTCATTCATTTCAACTGTTCG
ATG
Found at i:150866979 original size:49 final size:49
Alignment explanation
Indices: 150866909--150867119 Score: 372
Period size: 49 Copynumber: 4.3 Consensus size: 49
150866899 CCCTTCGGGA
150866909 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
150866956 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
150867005 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
150867054 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
150867103 CTTATCACATATATATA
1 CTTATCACATATATATA
150867120 TCTCATACAA
Statistics
Matches: 158, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
47 10 0.06
48 1 0.01
49 147 0.93
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:150870754 original size:40 final size:40
Alignment explanation
Indices: 150870692--150870832 Score: 221
Period size: 40 Copynumber: 3.5 Consensus size: 40
150870682 CGAATACACG
* *
150870692 TCACCAGCAT-AATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAA-TGCTCTTCGGGACTTAGCCCGGATACA
* * *
150870732 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
150870772 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
150870812 TCACTAGCATGAATGCTCTTC
1 TCACTAGCATGAATGCTCTTC
150870833 ATGAATGCTC
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 90 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:150870837 original size:13 final size:13
Alignment explanation
Indices: 150870819--150870845 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
150870809 ACATCACTAG
150870819 CATGAATGCTCTT
1 CATGAATGCTCTT
150870832 CATGAATGCTCTT
1 CATGAATGCTCTT
150870845 C
1 C
150870846 GGGACTTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CATGAATGCTCTT
Found at i:150870859 original size:53 final size:53
Alignment explanation
Indices: 150870779--150870885 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
150870769 ACATCACTAG
150870779 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTT
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTT
150870832 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTT
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTT
150870885 C
1 C
150870886 GGGACTTGGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (53 bp):
CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTT
Found at i:150870887 original size:40 final size:40
Alignment explanation
Indices: 150870832--150870981 Score: 282
Period size: 40 Copynumber: 3.8 Consensus size: 40
150870822 GAATGCTCTT
150870832 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
*
150870872 CATGAATGCTCTTCGGGACTTGGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
*
150870912 CATGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAG
1 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
150870952 CATGAATGCTCTTCGGGACTTAGCCCGGAT
1 CATGAATGCTCTTCGGGACTTAGCCCGGAT
150870982 CGTCGTCGAG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAG
Found at i:150870901 original size:93 final size:91
Alignment explanation
Indices: 150870741--150870981 Score: 360
Period size: 93 Copynumber: 2.7 Consensus size: 91
150870731 ATCACTAGCA
* *
150870741 CGAATGCTCTTCGGAACTTAGCCCAGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
1 CGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
150870806 GATACATCACTAGCATGAATGCTCTT
66 GATACATCACTAGCATGAATGCTCTT
*
150870832 CATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTGGCC
1 C--GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCC
150870897 CGGATACATCACTAGCATGAATGCTCTT
64 CGGATACATCACTAGCATGAATGCTCTT
150870925 C--A---------GGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
1 CGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
150870979 GAT
66 GAT
150870982 CGTCGTCGAG
Statistics
Matches: 144, Mismatches: 4, Indels: 15
0.88 0.02 0.09
Matches are distributed among these distances:
80 54 0.38
89 1 0.01
91 1 0.01
93 88 0.61
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (91 bp):
CGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCG
GATACATCACTAGCATGAATGCTCTT
Found at i:150870943 original size:133 final size:133
Alignment explanation
Indices: 150870705--150870965 Score: 468
Period size: 133 Copynumber: 2.0 Consensus size: 133
150870695 CCAGCATAAT
150870705 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATA
1 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATA
*
150870770 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCAT
66 CATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCAT
150870835 GAA
131 GAA
* * * * *
150870838 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTGGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATA
150870903 CATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
66 CATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
150870966 GGGACTTAGC
Statistics
Matches: 122, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 122 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (133 bp):
TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCAGATA
CATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCAT
GAA
Found at i:150871081 original size:38 final size:38
Alignment explanation
Indices: 150871039--150871113 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
150871029 GAATTTTAAT
*
150871039 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* * *
150871077 CCGGACATAATTTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
150871114 AACTCGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:150873386 original size:48 final size:49
Alignment explanation
Indices: 150873293--150873467 Score: 311
Period size: 49 Copynumber: 3.6 Consensus size: 49
150873283 CCCTTCGGGA
*
150873293 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
150873340 CTTATCACATATATATACACTTTCACATTC-TCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
150873388 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
150873437 CTTATCACATATATACACACTTTCACATTCA
1 CTTATCACATATATACACACTTTCACATTCA
150873468 ACATATATAC
Statistics
Matches: 124, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
47 10 0.08
48 48 0.39
49 66 0.53
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:150873457 original size:97 final size:95
Alignment explanation
Indices: 150873293--150873466 Score: 312
Period size: 97 Copynumber: 1.8 Consensus size: 95
150873283 CCCTTCGGGA
* *
150873293 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATTTACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
150873358 ACTTTCACATTCTCACATCGGCCATTAGGC
66 ACTTTCACATTCTCACATCGGCCATTAGGC
150873388 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
150873453 ACACTTTCACATTC
64 ACACTTTCACATTC
150873467 AACATATATA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
95 10 0.13
96 1 0.01
97 64 0.85
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (95 bp):
CTTATCACATTTACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
ACTTTCACATTCTCACATCGGCCATTAGGC
Found at i:150873476 original size:74 final size:74
Alignment explanation
Indices: 150873394--150873541 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
150873384 AGGCCTTATC
150873394 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
1 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
150873459 TCACATTCA
66 TCACATTCA
150873468 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
1 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
150873533 TCACATTCA
66 TCACATTCA
150873542 TCACATCGGC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.31
Consensus pattern (74 bp):
ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
TCACATTCA
Found at i:150873477 original size:25 final size:25
Alignment explanation
Indices: 150873443--150873492 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
150873433 AGGCCTTATC
150873443 ACATATATACACACTTTCACATTCA
1 ACATATATACACACTTTCACATTCA
150873468 ACATATATACACACTTTCACATTCA
1 ACATATATACACACTTTCACATTCA
150873493 TCACATCGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (25 bp):
ACATATATACACACTTTCACATTCA
Found at i:150873522 original size:123 final size:122
Alignment explanation
Indices: 150873346--150873574 Score: 440
Period size: 123 Copynumber: 1.9 Consensus size: 122
150873336 AGGCCTTATC
*
150873346 ACATATATATACACTTTCACATTCTCACATCGGCCATTAGGCCTTATCACATATATACACACTTT
1 ACATATATACACACTTTCACATTCTCACATCGGCCATTAGGCCTTATCACATATATACACACTTT
150873411 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCA
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCA
150873468 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTT
1 ACATATATACACACTTTCACATTC-TCACATCGGCCATTAGGCCTTATCACATATATACACACTT
150873533 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
150873575 TATCTCATAC
Statistics
Matches: 105, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
122 23 0.22
123 82 0.78
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.31
Consensus pattern (122 bp):
ACATATATACACACTTTCACATTCTCACATCGGCCATTAGGCCTTATCACATATATACACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCA
Found at i:150873523 original size:49 final size:49
Alignment explanation
Indices: 150873468--150873574 Score: 214
Period size: 49 Copynumber: 2.2 Consensus size: 49
150873458 TTCACATTCA
150873468 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
150873517 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
150873566 ACATATATA
1 ACATATATA
150873575 TATCTCATAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.31
Consensus pattern (49 bp):
ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:150878189 original size:30 final size:30
Alignment explanation
Indices: 150878155--150878215 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
150878145 TCCTTAACTC
150878155 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
150878185 AAACTTTTGCATATTTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
150878215 A
1 A
150878216 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:150882415 original size:17 final size:17
Alignment explanation
Indices: 150882370--150882433 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
150882360 AATTATATGT
*
150882370 TATTTTATCATATTATTTA
1 TATTTTATTATA-T-TTTA
*
150882389 TATTTCATTATATTTTA
1 TATTTTATTATATTTTA
* * *
150882406 TATTTTATTACATATCA
1 TATTTTATTATATTTTA
150882423 TATTTTATTAT
1 TATTTTATTAT
150882434 GTATTATTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 27 0.71
18 1 0.03
19 10 0.26
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTATTATATTTTA
Found at i:150885386 original size:40 final size:40
Alignment explanation
Indices: 150885337--150885510 Score: 226
Period size: 40 Copynumber: 4.4 Consensus size: 40
150885327 TCTTCGGAAT
* **
150885337 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTC
* * *** * *
150885376 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
150885416 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
*
150885456 TTAGCCCGGATATAACAACTCGAACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
150885496 TTAGCCCGGATATAA
1 TTAGCCCGGATATAA
150885511 TCATTAGCAT
Statistics
Matches: 117, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 3 0.03
40 112 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
Found at i:150885526 original size:40 final size:39
Alignment explanation
Indices: 150885337--150885543 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 39
150885327 TCTTCGGAAT
* *
150885337 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
150885376 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
150885416 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
150885456 TTAGCCCGGATATAACAACTCGAACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* * *
150885496 TTAGCCCGGATATAATCATTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
150885535 TTAGCCCGG
1 TTAGCCCGG
150885544 GTATCATTCA
Statistics
Matches: 144, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.10
40 126 0.88
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:150885526 original size:80 final size:79
Alignment explanation
Indices: 150885337--150885543 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 79
150885327 TCTTCGGAAT
* * * * *** * *
150885337 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGAAC
150885401 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
150885416 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGAAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGAAC
*
150885481 GAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
150885496 TTAGCCCGGATATAATCATTAGCATAAATGCCTTC-GGACTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
150885544 GTATCATTCA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 17 0.16
80 90 0.83
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGAACA
AATGCCTTCGGGTC
Found at i:150893494 original size:40 final size:39
Alignment explanation
Indices: 150893446--150893653 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
150893436 TTCTTCGAAT
* *
150893446 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
150893485 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
150893525 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
150893565 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * *
150893605 TTAGCCCGGATATAATC-ATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
150893645 TTAGCCCGG
1 TTAGCCCGG
150893654 GTATCATTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 140 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:150913560 original size:28 final size:27
Alignment explanation
Indices: 150913492--150913580 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
150913482 TAAGTTGTAC
*
150913492 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
150913519 AATTACCGAAATACCCCTGTAAGGTTAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* * *
150913547 AATTACCGAGATACCCCTGTGAGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
150913574 AATTACC
1 AATTACC
150913581 ATTTTGCCCT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 32 0.56
28 25 0.44
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:150919844 original size:22 final size:22
Alignment explanation
Indices: 150919818--150919861 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
150919808 GAAAATGATG
* *
150919818 AAAATTTATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
150919840 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
150919862 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:150926516 original size:48 final size:48
Alignment explanation
Indices: 150926456--150926684 Score: 341
Period size: 48 Copynumber: 4.8 Consensus size: 48
150926446 GCTATGGCAT
* *
150926456 TGTGATCCCATGTAAGACTATGTCTGGGACATGGAATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
150926504 TTTGATCCCATGTAAGACCATGTCTAGGACATGGTATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
150926552 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
150926600 TGTGATCCCATGTAAGACCATAACTGGGATATGGCGTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** *
150926648 TGTGATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
150926685 CAATATGAGA
Statistics
Matches: 163, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:150931998 original size:27 final size:27
Alignment explanation
Indices: 150931968--150932035 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
150931958 GTGGGCTAAT
150931968 ATTACTGGAATACCCCTGTAAGGTAGA
1 ATTACTGGAATACCCCTGTAAGGTAGA
* * * *
150931995 ATTACTGAAATGCCCTTGTAGGGTAGA
1 ATTACTGGAATACCCCTGTAAGGTAGA
150932022 ATTACT-GAATACCC
1 ATTACTGGAATACCC
150932036 TCGGTTTACA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
ATTACTGGAATACCCCTGTAAGGTAGA
Found at i:150932062 original size:27 final size:27
Alignment explanation
Indices: 150932029--150932253 Score: 145
Period size: 27 Copynumber: 8.4 Consensus size: 27
150932019 AGAATTACTG
*
150932029 AATACCCTCGGTTTACAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
*
150932056 AATACCCTT-GATTAGCAAAATTACCAA
1 AATACCCTTGGTTTA-CAAAATTACCAA
* * **
150932083 AATACCCCTGATTTGGAAAATTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
* * * ** *
150932110 AATATCTTTGATTT-GGAAATTA-TAGA
1 AATACCCTTGGTTTACAAAATTACCA-A
* * * *
150932136 AATACCCCT-ATTTATAAAATTACAAA
1 AATACCCTTGGTTTACAAAATTACCAA
* *
150932162 AATACCCTTGACTTTAAAAAATTA-CAGA
1 AATACCCTTG-GTTTACAAAATTACCA-A
* * *
150932190 AATACCATTGGTTTGCAAATTTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
** * *
150932217 AATACCCTTGGTTTGTAGATTTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
*
150932244 AACACCCTTG
1 AATACCCTTG
150932254 TAGGGTGAAA
Statistics
Matches: 158, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
25 5 0.03
26 33 0.21
27 95 0.60
28 25 0.16
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATACCCTTGGTTTACAAAATTACCAA
Found at i:150932105 original size:54 final size:53
Alignment explanation
Indices: 150932044--150932226 Score: 190
Period size: 54 Copynumber: 3.4 Consensus size: 53
150932034 CCTCGGTTTA
150932044 CAAAATTACCAAAATACCCTTGATTAGCAAAATTACCA-AAATACCCCTGATTTG
1 CAAAATTACCAAAATACCCTTGATTAG-AAAATTA-CAGAAATACCCCTGATTTG
* * * * * * *
150932098 GAAAATTACCAAAATATCTTTGATTTGGAAATTATAGAAATACCCCT-ATTTA
1 CAAAATTACCAAAATACCCTTGATTAGAAAATTACAGAAATACCCCTGATTTG
* * * ** *
150932150 TAAAATTACAAAAATACCCTTGACTTTAAAAAATTACAGAAATACCATTGGTTTG
1 CAAAATTACCAAAATACCCTTGA--TTAGAAAATTACAGAAATACCCCTGATTTG
*
150932205 CAAATTTACCAAAATACCCTTG
1 CAAAATTACCAAAATACCCTTG
150932227 GTTTGTAGAT
Statistics
Matches: 103, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
52 24 0.23
53 16 0.16
54 41 0.40
55 22 0.21
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (53 bp):
CAAAATTACCAAAATACCCTTGATTAGAAAATTACAGAAATACCCCTGATTTG
Found at i:150932130 original size:80 final size:81
Alignment explanation
Indices: 150932046--150932226 Score: 192
Period size: 80 Copynumber: 2.2 Consensus size: 81
150932036 TCGGTTTACA
* **
150932046 AAATTACCAAAATACCCTTGA-TTAGCAAAATTACCAAAATACCCCTGA-TTTGGAAAATTACCA
1 AAATTACCAAAATACCCTTGATTTA-CAAAATTACAAAAATACCCCTGACTTTAAAAAATTA-CA
* * *
150932109 -AAATATCTTTGATTTGG
64 GAAATACCATTGATTTGC
* * * *
150932126 AAATTA-TAGAAATACCCCT-ATTTATAAAATTACAAAAATACCCTTGACTTTAAAAAATTACAG
1 AAATTACCA-AAATACCCTTGATTTACAAAATTACAAAAATACCCCTGACTTTAAAAAATTACAG
*
150932189 AAATACCATTGGTTTGC
65 AAATACCATTGATTTGC
150932206 AAATTTACCAAAATACCCTTG
1 AAA-TTACCAAAATACCCTTG
150932227 GTTTGTAGAT
Statistics
Matches: 81, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
79 24 0.30
80 44 0.54
81 12 0.15
82 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGATTTACAAAATTACAAAAATACCCCTGACTTTAAAAAATTACAGA
AATACCATTGATTTGC
Found at i:150932155 original size:26 final size:28
Alignment explanation
Indices: 150932126--150932195 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
150932116 TTTGATTTGG
* *
150932126 AAATTATAGAAATACCCCT-A-TTTATA
1 AAATTACAGAAATACCCCTGACTTTAAA
* *
150932152 AAATTACAAAAATACCCTTGACTTTAAA
1 AAATTACAGAAATACCCCTGACTTTAAA
150932180 AAATTACAGAAATACC
1 AAATTACAGAAATACC
150932196 ATTGGTTTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 16 0.43
27 1 0.03
28 20 0.54
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.29
Consensus pattern (28 bp):
AAATTACAGAAATACCCCTGACTTTAAA
Found at i:150932552 original size:41 final size:41
Alignment explanation
Indices: 150932491--150932613 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
150932481 GGAGGAAGAA
*
150932491 ATTGAGGATCGCATGTTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
150932532 ATTGAGGATCGCATGGTTGCTTAACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
150932573 ATTAAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
150932614 TTGGCTTTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:150934102 original size:40 final size:40
Alignment explanation
Indices: 150934035--150934259 Score: 294
Period size: 40 Copynumber: 5.7 Consensus size: 40
150934025 GGATATAACC
* * * * *
150934035 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
150934074 ACTAGCACAAATGCCTTCGGGGCTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
150934114 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
150934154 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
150934194 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
150934234 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
150934260 ACCCCGTTAG
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 7 0.04
40 160 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Done.