Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 488 of 770
Found at i:150938543 original size:40 final size:40
Alignment explanation
Indices: 150938498--150938627 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
150938488 CGGAATACAA
150938498 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
150938538 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
150938578 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
150938618 CCGGATATAA
1 CCGGATATAA
150938628 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:150946585 original size:40 final size:41
Alignment explanation
Indices: 150946540--150946668 Score: 160
Period size: 40 Copynumber: 3.2 Consensus size: 41
150946530 CGGAATACAA
150946540 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTAGCACGAATGCCTTCGGGTCTTAGC
* * *
150946580 CCGGATAGAACGAC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTAGCACGAATGCCTTCGGGTCTTAGC
* * *
150946620 CCGGATGT-AGC-CGTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACGTAGCACGAA-TGCCTTCGGGTCTTAGC
150946659 CCGGATATAA
1 CCGGATATAA
150946669 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
38 3 0.04
39 30 0.39
40 43 0.57
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (41 bp):
CCGGATATAACCACGTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:150952026 original size:40 final size:39
Alignment explanation
Indices: 150951858--150952028 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
150951848 AGAAATTGAA
* *
150951858 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
150951898 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
150951938 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
150951978 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
150952018 TGATATCCGGG
1 TGATATCCGGG
150952029 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:150960062 original size:40 final size:39
Alignment explanation
Indices: 150959894--150960064 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
150959884 AGAAATTGAA
* *
150959894 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
150959934 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
150959974 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
150960014 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
150960054 TGATATCCGGG
1 TGATATCCGGG
150960065 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:150968189 original size:180 final size:180
Alignment explanation
Indices: 150967887--150968428 Score: 998
Period size: 180 Copynumber: 3.0 Consensus size: 180
150967877 TGTAAAACAC
* *
150967887 TTTGGTGAGGTAAAAATAATTGAGCTTTAAAAGATGGTCGAAAA-CTATTTAAGAACTAAGTAAA
1 TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTC-AAAATTTATTTAAGAACTAAGTAAA
*
150967951 TGATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAGGATTTAACCAAGGTAACATA
65 TGATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATA
150968016 CTTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
130 CTTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
150968067 TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAATTTATTTAAGAACTAAGTAAAT
1 TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAATTTATTTAAGAACTAAGTAAAT
150968132 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
66 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
150968197 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
131 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
*
150968247 GTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAATTTATTTAAGAACTAAGTAAAT
1 TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAATTTATTTAAGAACTAAGTAAAT
* *
150968312 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATTAGATTTAATCAAGGTAACATAC
66 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
150968377 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTA-AGTTCATGT
131 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATA-TTCATGT
150968427 TT
1 TT
150968429 ACACTGTTAA
Statistics
Matches: 353, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
179 5 0.01
180 348 0.99
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.35
Consensus pattern (180 bp):
TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAATTTATTTAAGAACTAAGTAAAT
GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
Found at i:150970124 original size:28 final size:28
Alignment explanation
Indices: 150970084--150970140 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
150970074 TAGAAGGAAG
*
150970084 AAGGTTTTATGCATGGTTGCATGGGCGT
1 AAGGTTTTATGCATGATTGCATGGGCGT
150970112 AAGGTTTTATGCATGATTGCATGGGCGT
1 AAGGTTTTATGCATGATTGCATGGGCGT
150970140 A
1 A
150970141 GTGTATGCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.11, G:0.33, T:0.35
Consensus pattern (28 bp):
AAGGTTTTATGCATGATTGCATGGGCGT
Found at i:150972517 original size:9 final size:9
Alignment explanation
Indices: 150972490--150972525 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
150972480 TAAGTCTAAT
150972490 ATGTGTTTAA
1 ATGTGTTT-A
*
150972500 ATGTTTTTA
1 ATGTGTTTA
150972509 ATGTGTTTA
1 ATGTGTTTA
150972518 ATGTGTTT
1 ATGTGTTT
150972526 TTAATGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.58
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:150972526 original size:20 final size:19
Alignment explanation
Indices: 150972490--150972536 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
150972480 TAAGTCTAAT
150972490 ATGTGTTTAAATGTTTTTA
1 ATGTGTTTAAATGTTTTTA
*
150972509 ATGTGTTTAATGTGTTTTTA
1 ATGTGTTTAA-ATGTTTTTA
*
150972529 ATGGGTTT
1 ATGTGTTT
150972537 GTTTGTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (19 bp):
ATGTGTTTAAATGTTTTTA
Found at i:150973471 original size:19 final size:20
Alignment explanation
Indices: 150973436--150973473 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
150973426 TTTTGCAACC
150973436 TTATTTTAAGCCTATTTATA
1 TTATTTTAAGCCTATTTATA
150973456 TTATTTTAAG-CTATTTAT
1 TTATTTTAAGCCTATTTAT
150973474 TTCTTCTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.29, C:0.08, G:0.05, T:0.58
Consensus pattern (20 bp):
TTATTTTAAGCCTATTTATA
Found at i:150974228 original size:24 final size:24
Alignment explanation
Indices: 150974200--150974250 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
150974190 GGGCTAGTCT
*
150974200 TTCATAATTTGACACAAAGACTTA
1 TTCATAATTTGACAAAAAGACTTA
* * *
150974224 TTCATAGTTTGCCAAAAAGGCTTA
1 TTCATAATTTGACAAAAAGACTTA
150974248 TTC
1 TTC
150974251 TTACATATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (24 bp):
TTCATAATTTGACAAAAAGACTTA
Found at i:150975856 original size:63 final size:63
Alignment explanation
Indices: 150975778--150975904 Score: 227
Period size: 63 Copynumber: 2.0 Consensus size: 63
150975768 ATTCAATACA
*
150975778 AAGAATTTCACTATTTTAACATTTCATCTCAATAGTCTTTCATCTACAGTTTACAACAGCATC
1 AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAGTTTACAACAGCATC
* *
150975841 AAGAATTTCACTATTTTGACATTTCAACTCACTAGTCTTTCATCTACAGTTTACAACAGCATC
1 AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAGTTTACAACAGCATC
150975904 A
1 A
150975905 TGCAGAGTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (63 bp):
AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAGTTTACAACAGCATC
Found at i:150993571 original size:8 final size:8
Alignment explanation
Indices: 150993558--150993596 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
150993548 ATCGACAAAA
150993558 GCCGAAAT
1 GCCGAAAT
150993566 GCCGAAAT
1 GCCGAAAT
*
150993574 GCCGAAAA
1 GCCGAAAT
*
150993582 GTCGAAAT
1 GCCGAAAT
150993590 GCCGAAA
1 GCCGAAA
150993597 AGGTGAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:150995877 original size:40 final size:39
Alignment explanation
Indices: 150995727--150995879 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
150995717 AAATGTTCGA
* *
150995727 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
150995766 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGATTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
150995805 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
150995844 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
150995880 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:150995895 original size:40 final size:39
Alignment explanation
Indices: 150995728--150995910 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
150995718 AATGTTCGAG
* * *
150995728 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
150995767 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGATTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
150995806 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
150995845 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
150995885 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
150995911 GTTTGAACGA
Statistics
Matches: 127, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:151000917 original size:15 final size:15
Alignment explanation
Indices: 151000897--151000925 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
151000887 TCTTGGGTTT
151000897 ATTTATTCTGGATTC
1 ATTTATTCTGGATTC
151000912 ATTTATTCTGGATT
1 ATTTATTCTGGATT
151000926 TCTCTATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (15 bp):
ATTTATTCTGGATTC
Found at i:151005802 original size:79 final size:81
Alignment explanation
Indices: 151005701--151005885 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
151005691 ACGACTCGCT
** * *
151005701 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
151005764 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
151005781 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
151005845 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
151005861 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151005886 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:151005885 original size:40 final size:39
Alignment explanation
Indices: 151005694--151005885 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
151005684 GGATATAACG
* ** * *
151005694 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
151005734 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
151005774 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
151005813 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
151005853 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
151005886 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:151013858 original size:79 final size:81
Alignment explanation
Indices: 151013757--151013941 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
151013747 ACGACTCGCT
** * *
151013757 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
151013820 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
151013837 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
151013901 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
151013917 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151013942 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:151013941 original size:40 final size:39
Alignment explanation
Indices: 151013750--151013941 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
151013740 GGATATAACG
* ** * *
151013750 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
151013790 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
151013830 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
151013869 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
151013909 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
151013942 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:151017664 original size:28 final size:29
Alignment explanation
Indices: 151017597--151017697 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
151017587 ATAGTGAATC
*
151017597 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
151017626 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
151017654 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
151017684 CGCACACTTAGTGC
1 CGCACACTTAGTGC
151017698 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:151028477 original size:20 final size:20
Alignment explanation
Indices: 151028452--151028502 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
151028442 ATTTTGATAA
151028452 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
151028472 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
151028492 ACATGAGATGT
1 ACATGATATGT
151028503 TCATAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:151028579 original size:23 final size:23
Alignment explanation
Indices: 151028549--151028715 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
151028539 AGGAAGTGCA
151028549 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
151028572 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
151028596 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
151028620 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151028643 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151028666 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
151028689 AAAAGGGCTTTTGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
151028713 AAA
1 AAA
151028716 AGAGGCTAGG
Statistics
Matches: 138, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
23 71 0.51
24 67 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:151028604 original size:24 final size:23
Alignment explanation
Indices: 151028548--151028737 Score: 265
Period size: 24 Copynumber: 8.0 Consensus size: 23
151028538 GAGGAAGTGC
151028548 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
151028571 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
151028594 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
151028618 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
151028642 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
151028665 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
151028689 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
151028713 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
151028737 A
1 A
151028738 TGATAAAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 66 0.43
24 79 0.51
25 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:151028616 original size:47 final size:47
Alignment explanation
Indices: 151028547--151028715 Score: 277
Period size: 47 Copynumber: 3.6 Consensus size: 47
151028537 GGAGGAAGTG
151028547 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
151028594 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
151028642 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
151028688 TAAAAGGGCTTTTGCCCTAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
151028716 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 22 0.19
47 70 0.61
48 22 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:151034740 original size:25 final size:25
Alignment explanation
Indices: 151034712--151034781 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
151034702 CTCTTTTAAT
*
151034712 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
151034737 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
151034762 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
151034782 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:151035017 original size:27 final size:26
Alignment explanation
Indices: 151034987--151035225 Score: 241
Period size: 27 Copynumber: 8.9 Consensus size: 26
151034977 GGCAAAATGG
* * *
151034987 TAATTATACCTTACAAGGGTATCTCGA
1 TAATTCTACCCTAC-AGGGTATTTCGA
* * *
151035014 TAATTTTACCCTACAGGGAATTTCGG
1 TAATTCTACCCTACAGGGTATTTCGA
* *
151035040 TATTTCTACCCTACAAGGGTATTTTGA
1 TAATTCTACCCTAC-AGGGTATTTCGA
151035067 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACA-GGGTATTTCGA
*
151035093 GTAATTCTACCCTACAGGGTATTTCGG
1 -TAATTCTACCCTACAGGGTATTTCGA
*
151035120 TAATTCTACCCTACAGGGTTATTT-TA
1 TAATTCTACCCTACAGGG-TATTTCGA
* *
151035146 GTAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTCTACCCTACA-GGGTATTTCGA
* *
151035174 CAATTCTACCCTAGAGGGGTATTTCTG-
1 TAATTCTACCCTACA-GGGTATTTC-GA
151035201 TAATTCTACCCTACAAGGGTATTTC
1 TAATTCTACCCTAC-AGGGTATTTC
151035226 AATATTTTAC
Statistics
Matches: 180, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
26 50 0.28
27 125 0.69
28 5 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGTATTTCGA
Found at i:151035078 original size:53 final size:54
Alignment explanation
Indices: 151034986--151035225 Score: 313
Period size: 53 Copynumber: 4.5 Consensus size: 54
151034976 GGGCAAAATG
* * * * * *
151034986 GTAATTATACCTTACAAGGGTATCTCGATAATTTTACCCTACA-GGGAATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
151035039 GTATTTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * *
151035093 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* * ** * *
151035146 GTAATTCTACCCTATAGGGGTATTTCGGCAATTCTACCCTAGAGGGGTATTTCT
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
151035200 GTAATTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
151035226 AATATTTTAC
Statistics
Matches: 163, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
53 85 0.52
54 78 0.48
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:151035120 original size:80 final size:79
Alignment explanation
Indices: 151034986--151035224 Score: 311
Period size: 80 Copynumber: 3.0 Consensus size: 79
151034976 GGGCAAAATG
* * * * * * *
151034986 GTAATTATACCTTACAAGGGTATCTCGATAATTTTACCCTACAGGGAATTTCGGTATTTCTACCC
1 GTAATTCTACCCTACAGGGGTATTTCG-TAATTCTACCCTACAGGGTATTTCGGTAATTCTACCC
151035051 TACAAGGGTATTTT-
65 TACAAGGGTATTTTA
151035065 GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACC
1 G-TAATTCTACCCTACAGGGGTATTTC-GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACC
151035130 CTAC-AGGGTTATTTTA
64 CTACAAGGG-TATTTTA
* * * *
151035146 GTAATTCTACCCTATAGGGGTATTTCGGCAATTCTACCCTAGAGGGGTATTTCTGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTC-GTAATTCTACCCTACA-GGGTATTTCGGTAATTCTACC
151035211 CTACAAGGGTATTT
64 CTACAAGGGTATTT
151035225 CAATATTTTA
Statistics
Matches: 142, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
79 5 0.04
80 102 0.72
81 31 0.22
82 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (79 bp):
GTAATTCTACCCTACAGGGGTATTTCGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCT
ACAAGGGTATTTTA
Found at i:151035258 original size:107 final size:107
Alignment explanation
Indices: 151035043--151035237 Score: 257
Period size: 107 Copynumber: 1.8 Consensus size: 107
151035033 ATTTCGGTAT
* *
151035043 TTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
1 TTCTACCCTACAAGGGTATTTCGACAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
** ** *
151035108 AGGGTATTTCGGTAATTCTACCCTACAGGGTTATTTTAGTAA
66 AGGGTATTTCAATAATTCTACAATACAGAGTTATTTTAGTAA
* * * * *
151035150 TTCTACCCTATAGGGGTATTTCGGCAATTCTACCCTAGAGGGGTATTTCTGTAATTCTACCCTAC
1 TTCTACCCTACAAGGGTATTTCGACAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
*
151035215 AAGGGTATTTCAAT-ATTTTACAA
66 -AGGGTATTTCAATAATTCTACAA
151035238 ATCGAGAGTA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
107 64 0.85
108 11 0.15
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (107 bp):
TTCTACCCTACAAGGGTATTTCGACAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
AGGGTATTTCAATAATTCTACAATACAGAGTTATTTTAGTAA
Found at i:151035264 original size:27 final size:27
Alignment explanation
Indices: 151035229--151035395 Score: 137
Period size: 27 Copynumber: 6.2 Consensus size: 27
151035219 GTATTTCAAT
151035229 ATTTTACAAATC-GAGAGTATTTTGATA
1 ATTTTACAAATCAG-GAGTATTTTGATA
* * *
151035256 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGAGTATTTTGATA
** * *
151035283 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGAGTATTTTGATA
*
151035310 ATTTTACAAA-CTAGGGGTATTTT-AGTA
1 ATTTTACAAATC-AGGAGTATTTTGA-TA
* * *
151035337 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGAGTATTTTGATA
**
151035364 ATTTTACTGATCGAGG-GTATTTT-AGTA
1 ATTTTACAAATC-AGGAGTATTTTGA-TA
151035391 ATTTT
1 ATTTT
151035396 GTAAACGAGG
Statistics
Matches: 120, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
26 1 0.01
27 114 0.95
28 5 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTTTACAAATCAGGAGTATTTTGATA
Found at i:151035272 original size:107 final size:107
Alignment explanation
Indices: 151035068--151035277 Score: 234
Period size: 107 Copynumber: 2.0 Consensus size: 107
151035058 GTATTTTGAT
** **
151035068 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTA
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAATAATTCTACAATA
* **
151035133 CAGGGTTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGC
66 CAGAGTTATTTTAGTAATTCTACCAAATAGGGGTATTTCGGC
* * *
151035175 AATTCTACCCTAGAGGGGTATTTCTGTAATTCTACCCTACAAGGGTATTTCAAT-ATTTTACAA-
1 AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGGGTATTTCAATAATTCTACAAT
151035238 ATCGAGAG-TATTTT-GATAATT-T-CACAAATCAGGGGTATTT
65 A-C-AGAGTTATTTTAG-TAATTCTAC-CAAAT-AGGGGTATTT
151035278 TGGTAATTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
105 1 0.01
106 6 0.07
107 66 0.76
108 14 0.16
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (107 bp):
AATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCAATAATTCTACAATA
CAGAGTTATTTTAGTAATTCTACCAAATAGGGGTATTTCGGC
Found at i:151035303 original size:54 final size:54
Alignment explanation
Indices: 151035245--151035395 Score: 216
Period size: 54 Copynumber: 2.8 Consensus size: 54
151035235 CAAATCGAGA
* * * *
151035245 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACCAGGG
151035299 GTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAACCAGGG
**
151035353 GTATTTTGGTAATTTTACTGATC-GAGGGTATTTTAGTAATTTT
1 GTATTTTGGTAATTTTACAAATCAG-GGGTATTTTAGTAATTTT
151035396 GTAAACGAGG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
53 2 0.02
54 85 0.97
55 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAACCAGGG
Found at i:151035382 original size:81 final size:81
Alignment explanation
Indices: 151035245--151035395 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
151035235 CAAATCGAGA
* *
151035245 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTA
1 GTATTTTGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTA
151035310 ATTTTACAAACTAGGG
66 ATTTTACAAACTAGGG
* * * *
151035326 GTATTTT-AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTAG
1 GTATTTTGA-TAATTTCACAAACCAGGGGTATTTTGGTAATTTTAC-AAGCCAGGGGTATTTTAG
151035389 TAATTTT
64 TAATTTT
151035396 GTAAACGAGG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.02
81 58 0.94
82 3 0.05
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (81 bp):
GTATTTTGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTAGTA
ATTTTACAAACTAGGG
Found at i:151035444 original size:27 final size:27
Alignment explanation
Indices: 151035388--151035621 Score: 274
Period size: 27 Copynumber: 8.7 Consensus size: 27
151035378 GGGTATTTTA
* * *
151035388 GTAATTTTGTAAA-CGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
151035414 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
151035441 GTAATTCTATAAATCTAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
151035468 GTAAATCTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
151035495 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* **
151035522 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
151035549 ATAATTCTATAAATCGAGGGT-AAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
151035575 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
151035602 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
151035622 CATTTCAATA
Statistics
Matches: 181, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 35 0.19
27 146 0.81
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:151037984 original size:25 final size:25
Alignment explanation
Indices: 151037956--151038024 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
151037946 CTCTTTTAAT
*
151037956 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
151037981 AACTAGGGC-AAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
151038005 AACTGGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
151038025 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 21 0.54
25 18 0.46
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:151038258 original size:27 final size:27
Alignment explanation
Indices: 151038228--151038494 Score: 328
Period size: 27 Copynumber: 10.0 Consensus size: 27
151038218 TGGGCAAAAT
* * *
151038228 GGTAATTATACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
151038255 GGTAATTCTACCCTAC-AGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
151038281 GG-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
151038307 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
151038334 AGTAATTCT-CCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
151038360 GGTAATTCTACCCTA-TAGGGTTATTTT
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
151038387 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
151038414 GGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
151038441 TGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
151038468 GGTAATTCTACCTTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
151038494 G
1 G
151038495 ATATTTTACA
Statistics
Matches: 208, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.06
26 58 0.28
27 135 0.65
28 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:151038420 original size:107 final size:106
Alignment explanation
Indices: 151038229--151038492 Score: 386
Period size: 107 Copynumber: 2.5 Consensus size: 106
151038219 GGGCAAAATG
* * * *
151038229 GTAATTATACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTATTTTGGATTTCTACCCT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGAATTCTACCCT
*
151038294 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTGTTTCA
66 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
151038335 GTAATTCT-CCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGTTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGG-TATTTT-GGAATTCTACC
* * *
151038399 CTACAGGGGTATTTCGGTAATTCTACCCTAGAGGGGTATTTCT
64 CTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
151038442 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTT
151038493 CGATATTTTA
Statistics
Matches: 139, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
105 32 0.23
106 13 0.09
107 61 0.44
108 33 0.24
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (106 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGAATTCTACCCT
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:151038595 original size:106 final size:106
Alignment explanation
Indices: 151038485--151038688 Score: 252
Period size: 106 Copynumber: 1.9 Consensus size: 106
151038475 CTACCTTACA
*
151038485 GGGTATTTCGA-T-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATC-AGGGGTATTTT
1 GGGTATTT-GAGTAATTTTACAAA-CCAGAGTATTTTGATAATTTCACAAATCGA-GGGTATTTT
* * *
151038547 GGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTCAAACTAG
63 GGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTCAAACTAG
* * * * **
151038591 GGGTATTTTAGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGT
1 GGGTATTTGAGTAATTTTACAAACCAGAGTATTTTGATAATTTCACAAATCGAGGGTATTTTGGT
**
151038656 AATTTTGTAAACCAAGGGTATTTTAGTAATTTT
66 AATTTTACAAACCAAGGGTATTTTAGTAATTTT
151038689 GTAAATCAAG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
105 1 0.01
106 71 0.86
107 11 0.13
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (106 bp):
GGGTATTTGAGTAATTTTACAAACCAGAGTATTTTGATAATTTCACAAATCGAGGGTATTTTGGT
AATTTTACAAACCAAGGGTATTTTAGTAATTTTCAAACTAG
Found at i:151038596 original size:53 final size:51
Alignment explanation
Indices: 151038497--151038688 Score: 204
Period size: 53 Copynumber: 3.6 Consensus size: 51
151038487 GTATTTCGAT
* * * *
151038497 ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAA-CCAGGGTATTTTGGTAATTT-TCAAAT-AGGGGTATTTTGGTA
* *
151038551 ATTTTACAAGCCAGGGGTATTTTGGTAATTTTCAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACCA-GGGTATTTTGGTAATTTTCAAA-TAGGGGTATTTTGGTA
** *
151038604 ATTTTACAAACCAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAGGGTATTTTGGTAATTTT-CAAATAG-GGGTATTTTGGTA
** *
151038657 ATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 ATTTTACAAACC-AGGGTATTTTGGTAATTTT
151038689 GTAAATCAAG
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
52 20 0.17
53 56 0.47
54 43 0.36
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (51 bp):
ATTTTACAAACCAGGGTATTTTGGTAATTTTCAAATAGGGGTATTTTGGTA
Found at i:151038673 original size:27 final size:27
Alignment explanation
Indices: 151038484--151038702 Score: 201
Period size: 27 Copynumber: 8.2 Consensus size: 27
151038474 TCTACCTTAC
* * * *
151038484 AGGGTATTTCGAT-ATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCA
* * * *
151038510 AGAGTATTTTGATAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
151038537 GGGGTATTTTGGTAATTTTACAAGCCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
151038564 GGGGTATTTTGGTAATTTT-CAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
151038590 GGGGTATTTTAGTAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
** * *
151038616 AGGGTATTTTGGTAATTTTACTGATCG
1 AGGGTATTTTGGTAATTTTACAAACCA
**
151038643 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* ** *
151038670 AGGGTATTTTAGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
151038697 AGGGTA
1 AGGGTA
151038703 AAACAGTAAT
Statistics
Matches: 163, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
26 55 0.34
27 108 0.66
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:151038710 original size:27 final size:27
Alignment explanation
Indices: 151038681--151038873 Score: 273
Period size: 27 Copynumber: 7.2 Consensus size: 27
151038671 GGGTATTTTA
* * *
151038681 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
151038708 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
**
151038735 GTAATT-TGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
151038761 GTAATTCTATAAATCGAGGGTCAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
151038788 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
151038815 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
151038842 GTAATTCTGTAAATCGAGGGT-AAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
151038868 GTAATT
1 GTAATT
151038874 TTACAAATTG
Statistics
Matches: 150, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 34 0.23
27 116 0.77
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:151038882 original size:80 final size:80
Alignment explanation
Indices: 151038680--151038884 Score: 295
Period size: 80 Copynumber: 2.6 Consensus size: 80
151038670 AGGGTATTTT
* * * *
151038680 AGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTGTA
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTGTA
*
151038745 AATCGAGGGTAAAAT
66 AATCGAGGGTAAAAC
* * *
151038760 AGTAATTCTATAAATCGAGGGTCAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGT
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATT-TGT
151038825 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * *
151038841 GGTAATTCTGTAAATCGAGGGT-AAACGGTAATTTTACAAATTGA
1 AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGA
151038885 AGGCATTTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 73 0.66
81 38 0.34
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (80 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTGTA
AATCGAGGGTAAAAC
Found at i:151042839 original size:40 final size:40
Alignment explanation
Indices: 151042731--151042840 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
151042721 ATTGAATGAT
* * * * *
151042731 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
151042771 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
151042811 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
151042841 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:151042855 original size:40 final size:39
Alignment explanation
Indices: 151042731--151042880 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
151042721 ATTGAATGAT
* * * * * * *
151042731 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
151042771 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
151042811 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
151042851 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
151042881 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:151050980 original size:40 final size:40
Alignment explanation
Indices: 151050925--151051092 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
151050915 TGAATGATAC
* *
151050925 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
151050965 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
151051005 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
151051045 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
151051085 CC-GGCTAA
1 CCGGGCTAA
151051093 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:151059086 original size:40 final size:40
Alignment explanation
Indices: 151059031--151059194 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
151059021 TGATACCCGA
* *
151059031 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* * * *
151059071 GCTAAGACCCGAAGGCATTCGTACGAGTTG-TTATATCCAG
1 GCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCGG
* * ** *
151059111 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* * * * *
151059151 GTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATATCC-G
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
151059190 GCTAA
1 GCTAA
151059195 ATTCTGAAGA
Statistics
Matches: 97, Mismatches: 25, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
39 6 0.06
40 89 0.92
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
Found at i:151059184 original size:80 final size:79
Alignment explanation
Indices: 151059031--151059194 Score: 186
Period size: 80 Copynumber: 2.1 Consensus size: 79
151059021 TGATACCCGA
* * ** * *
151059031 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTACG
1 GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCAAAGGCATTCGTACG
*
151059096 AGTTGTTATATCCAG
66 AGTGGTTATATCC-G
* * * *
151059111 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCAAAGGCAATT-GTGC
1 GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCAAAGGC-ATTCGTAC
**
151059175 TTGTGGTTATATCCG
65 GAGTGGTTATATCCG
151059190 GCTAA
1 GCTAA
151059195 ATTCTGAAGA
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
79 6 0.09
80 61 0.87
81 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (79 bp):
GCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCAAAGGCATTCGTACG
AGTGGTTATATCCG
Found at i:151073914 original size:24 final size:26
Alignment explanation
Indices: 151073851--151073915 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 26
151073841 CTCACCACAG
* *
151073851 CTCGTATGAGCTTACTGATATATCAG
1 CTCGTAAGAGCTTACTGATATATCAA
* *
151073877 CTCGTAAGATCTTACT-AT-TTTCAA
1 CTCGTAAGAGCTTACTGATATATCAA
*
151073901 CTCGTCAGAGCTTAC
1 CTCGTAAGAGCTTAC
151073916 CGTTTCAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
24 17 0.52
25 2 0.06
26 14 0.42
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
CTCGTAAGAGCTTACTGATATATCAA
Found at i:151084417 original size:10 final size:11
Alignment explanation
Indices: 151084401--151084433 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
151084391 GTGTTTTGTC
151084401 CCTTTTTGGCT
1 CCTTTTTGGCT
*
151084412 CGTTTTTGGCT
1 CCTTTTTGGCT
151084423 CC-TTTTGGCT
1 CCTTTTTGGCT
151084433 C
1 C
151084434 TTGGTGCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.00, C:0.27, G:0.21, T:0.52
Consensus pattern (11 bp):
CCTTTTTGGCT
Found at i:151084419 original size:11 final size:10
Alignment explanation
Indices: 151084402--151084435 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
151084392 TGTTTTGTCC
151084402 CTTTTTGGCT
1 CTTTTTGGCT
151084412 CGTTTTTGGCT
1 C-TTTTTGGCT
*
151084423 CCTTTTGGCT
1 CTTTTTGGCT
151084433 CTT
1 CTT
151084436 GGTGCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.00, C:0.24, G:0.21, T:0.56
Consensus pattern (10 bp):
CTTTTTGGCT
Found at i:151089461 original size:77 final size:81
Alignment explanation
Indices: 151089349--151089529 Score: 239
Period size: 77 Copynumber: 2.3 Consensus size: 81
151089339 TACTCGTTCA
* *
151089349 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
151089412 ATTTA-TAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
* **
151089427 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
151089490 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
151089506 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
151089530 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
76 3 0.03
77 45 0.51
78 15 0.17
79 15 0.17
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:151089529 original size:40 final size:40
Alignment explanation
Indices: 151089347--151089529 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
151089337 GCTACTCGTT
*
151089347 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
151089387 CAAATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
151089426 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
151089464 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
151089505 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151089530 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
37 13 0.10
38 23 0.18
39 18 0.14
40 58 0.46
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:151097529 original size:40 final size:40
Alignment explanation
Indices: 151097492--151097669 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
151097482 GCTACTCGTT
*
151097492 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
151097532 CAAATGCCTTCGGGACTTAACCCGGATT-TA--AACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
151097570 C--ATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
151097607 CAAATGCCTTC-GGATCTTAGTCCGG--ATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
151097646 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
151097670 ACATCATTCG
Statistics
Matches: 119, Mismatches: 8, Indels: 24
0.79 0.05 0.16
Matches are distributed among these distances:
35 11 0.09
36 11 0.09
37 9 0.08
38 32 0.27
39 20 0.17
40 34 0.29
41 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:151097664 original size:38 final size:39
Alignment explanation
Indices: 151097492--151097670 Score: 185
Period size: 38 Copynumber: 4.7 Consensus size: 39
151097482 GCTACTCGTT
* * *
151097492 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTAGCA
* *
151097532 CAAATGCCTTCGGGACTTAACCCGGATT--TAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGT-AACTAGCA
*
151097570 C--ATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTAGCA
* *
151097607 CAAATGCCTTC-GGATCTTAGTCCGGA-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAAC-TAGCA
151097646 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151097671 CATCATTCGA
Statistics
Matches: 121, Mismatches: 8, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
35 9 0.07
36 14 0.12
37 10 0.08
38 34 0.28
39 21 0.17
40 33 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTAGCA
Found at i:151103628 original size:40 final size:39
Alignment explanation
Indices: 151103584--151103765 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
151103574 GTTCAAAACA
* * ** * *
151103584 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
151103624 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
151103664 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
151103703 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
151103742 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
151103766 CTCGAATTCA
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:151103695 original size:39 final size:39
Alignment explanation
Indices: 151103614--151103766 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
151103604 TATGGTAACC
* *
151103614 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
151103654 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
151103693 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
151103732 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
151103767 TCGAATTCAT
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:151111769 original size:39 final size:39
Alignment explanation
Indices: 151111661--151111811 Score: 234
Period size: 38 Copynumber: 3.9 Consensus size: 39
151111651 TATGGTAACC
* *
151111661 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
151111701 CGCACAATTGCCTT-GGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
151111739 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
151111778 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
151111812 TCGAACATTC
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 51 0.50
39 39 0.38
40 13 0.13
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:151111771 original size:77 final size:78
Alignment explanation
Indices: 151111661--151111810 Score: 257
Period size: 77 Copynumber: 1.9 Consensus size: 78
151111651 TATGGTAACC
*
151111661 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTGGGCTTAGCCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGCTTAGCCC
151111726 GGATATCATAGCT
66 GGATATCATAGCT
* * *
151111739 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGCTTAGCCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGCTTAGCCC
151111803 GGATATCA
66 GGATATCA
151111811 CTCGAACATT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 51 0.75
78 17 0.25
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (78 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGCTTAGCCC
GGATATCATAGCT
Found at i:151115561 original size:17 final size:17
Alignment explanation
Indices: 151115522--151115563 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
151115512 TTGGGTCGTG
* *
151115522 TGGGCCCAATGGGCTTG
1 TGGGCCTAATGGGCTTA
*
151115539 TAGGCCTAATGGGCTTA
1 TGGGCCTAATGGGCTTA
151115556 TGGGCCTA
1 TGGGCCTA
151115564 CACAGATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.21, G:0.36, T:0.26
Consensus pattern (17 bp):
TGGGCCTAATGGGCTTA
Found at i:151116108 original size:26 final size:27
Alignment explanation
Indices: 151116009--151116118 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
151115999 GATCGTTAAG
*
151116009 ACCCTCGACTTGTAAAATTACTAAAAT
1 ACCCTCGACTTGTAAAATTACTGAAAT
151116036 ACCCTCAGA-TTGTAAAATTA-TCGAAAT
1 ACCCTC-GACTTGTAAAATTACT-GAAAT
* * *
151116063 ACCCTCGATTTGTGAAATTACTGATAT
1 ACCCTCGACTTGTAAAATTACTGAAAT
*
151116090 ACCCT-GACTTGTAAAATTACTAAAAT
1 ACCCTCGACTTGTAAAATTACTGAAAT
151116116 ACC
1 ACC
151116119 ACCAGTTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 23 0.32
27 46 0.64
28 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
ACCCTCGACTTGTAAAATTACTGAAAT
Found at i:151116161 original size:80 final size:81
Alignment explanation
Indices: 151116009--151116162 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 81
151115999 GATCGTTAAG
* * *
151116009 ACCCTCGACTTGTAAAATTACTAAAATACCCTCAGATTGTAAAATTATCGAAATACCCTCGATTT
1 ACCCTCGACTTGTAAAATTACTAAAATACCCTCAGATTGTAAAATTACCAAAATACCCTCGATGT
* *
151116074 GTGAAATTACTGATAT
66 ATAAAATTACTGATAT
* * *
151116090 ACCCT-GACTTGTAAAATTACTAAAATACCAC-CAGTTTTTAAAATTACCAAAATACCCTTG-TA
1 ACCCTCGACTTGTAAAATTACTAAAATACC-CTCAGATTGTAAAATTACCAAAATACCCTCGAT-
151116152 GTATAAAATTA
64 GTATAAAATTA
151116163 TCGAAATACC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
79 1 0.02
80 56 0.89
81 6 0.10
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (81 bp):
ACCCTCGACTTGTAAAATTACTAAAATACCCTCAGATTGTAAAATTACCAAAATACCCTCGATGT
ATAAAATTACTGATAT
Found at i:151116185 original size:27 final size:27
Alignment explanation
Indices: 151116128--151116187 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
151116118 CACCAGTTTT
* * *
151116128 TAAAATTACCAAAATACCCTTGTAGTA
1 TAAAATTACCAAAATACCCCTATAGGA
* * *
151116155 TAAAATTATCGAAATACCCCTATAGGG
1 TAAAATTACCAAAATACCCCTATAGGA
151116182 TAAAAT
1 TAAAAT
151116188 GACTATTTTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTATAGGA
Found at i:151125410 original size:27 final size:27
Alignment explanation
Indices: 151125378--151125429 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
151125368 TCCTGTTATA
151125378 TGGCTCTTTGTGAGCTTCCCATTAAAT
1 TGGCTCTTTGTGAGCTTCCCATTAAAT
151125405 TGGCTCTTTGTGAGCTTCCCATTAA
1 TGGCTCTTTGTGAGCTTCCCATTAA
151125430 TGCTAGCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40
Consensus pattern (27 bp):
TGGCTCTTTGTGAGCTTCCCATTAAAT
Found at i:151125493 original size:24 final size:24
Alignment explanation
Indices: 151125466--151125532 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
151125456 CTATCCAGAG
151125466 CTTCTCGATATGGTTCTTTGTGAA
1 CTTCTCGATATGGTTCTTTGTGAA
* *
151125490 CTTCCCGATAAGGTTCTTTGTGAA
1 CTTCTCGATATGGTTCTTTGTGAA
*
151125514 CTTCTCGATTATGGCTCTT
1 CTTCTCGA-TATGGTTCTT
151125533 ATGAGCTTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 29 0.78
25 8 0.22
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.43
Consensus pattern (24 bp):
CTTCTCGATATGGTTCTTTGTGAA
Found at i:151133336 original size:26 final size:27
Alignment explanation
Indices: 151133301--151133352 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
151133291 TTAGCTCTTA
*
151133301 TGAGCATCCCATTATA-TGGCTCTTTG
1 TGAGCATCCCATTAAATTGGCTCTTTG
* *
151133327 TGAGCTTCCCGTTAAATTGGCTCTTT
1 TGAGCATCCCATTAAATTGGCTCTTT
151133353 ATGAACTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40
Consensus pattern (27 bp):
TGAGCATCCCATTAAATTGGCTCTTTG
Found at i:151133437 original size:24 final size:24
Alignment explanation
Indices: 151133405--151133450 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
151133395 GGAGCTTTCC
*
151133405 GATATGGTTCTTTGTGAACTTCTT
1 GATAAGGTTCTTTGTGAACTTCTT
151133429 GATAAGGTTCTTTGTGAACTTC
1 GATAAGGTTCTTTGTGAACTTC
151133451 CATATTATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.13, G:0.22, T:0.46
Consensus pattern (24 bp):
GATAAGGTTCTTTGTGAACTTCTT
Found at i:151135850 original size:47 final size:46
Alignment explanation
Indices: 151135786--151135913 Score: 193
Period size: 47 Copynumber: 2.7 Consensus size: 46
151135776 GTGTGAATAA
151135786 TACCTTGATTTGGCTATGGGCCATGATATAGGTATTTTGAGAGGAGC
1 TACCTTGATTTGGCTATGGGCCATG-TATAGGTATTTTGAGAGGAGC
*
151135833 TACCTTGATTTGGCTATGAGCCATTGTATAGGTATTTTGAGAGGAGC
1 TACCTTGATTTGGCTATGGGCCA-TGTATAGGTATTTTGAGAGGAGC
* * *
151135880 TACCTTGATATGGCTACGGCCCATGGTATAGGTA
1 TACCTTGATTTGGCTATGGGCCAT-GTATAGGTA
151135914 CTTATCAATT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 1 0.01
47 71 0.96
48 2 0.03
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (46 bp):
TACCTTGATTTGGCTATGGGCCATGTATAGGTATTTTGAGAGGAGC
Found at i:151139943 original size:124 final size:124
Alignment explanation
Indices: 151139721--151139945 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
151139711 GAATTATGTG
* * * * * * *
151139721 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
151139786 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
151139845 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
151139910 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
151139946 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:151140067 original size:40 final size:40
Alignment explanation
Indices: 151139940--151140069 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
151139930 TTGCTGGAAA
* * *
151139940 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
151139980 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
151140020 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
151140060 TTATATCCGG
1 TTATATCCGG
151140070 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:151148046 original size:124 final size:124
Alignment explanation
Indices: 151147824--151148048 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
151147814 GAATTATGTG
* * * * * * *
151147824 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
151147889 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
151147948 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
151148013 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
151148049 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:151148138 original size:40 final size:38
Alignment explanation
Indices: 151148046--151148153 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 38
151148036 CTGGAAATTA
* *
151148046 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGCTAC
*
151148084 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-C-TAC
151148123 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
151148154 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
36 3 0.05
37 27 0.43
38 1 0.02
39 2 0.03
40 30 0.48
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGCTAC
Found at i:151148167 original size:40 final size:40
Alignment explanation
Indices: 151148043--151148169 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
151148033 TTGCTGGAAA
*
151148043 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTG--C-TAG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCACGTAG
* * *
151148080 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTAG
* *
151148120 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTAG
151148160 TTATATCCGG
1 TTATATCCGG
151148170 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
36 3 0.04
37 26 0.35
39 1 0.01
40 45 0.60
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTAG
Found at i:151154873 original size:25 final size:25
Alignment explanation
Indices: 151154825--151154874 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
151154815 CCTTATAATA
* *
151154825 TAAAAATGACCATTTTGCCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
*
151154850 TAAAAATGACCATTATACCTCTAGG
1 TAAAAATGACCATTATACCCCTAGG
151154875 GTTTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:151154927 original size:9 final size:9
Alignment explanation
Indices: 151154913--151154969 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
151154903 TTTGAAAAAC
151154913 ATGATATGT
1 ATGATATGT
*
151154922 ATGATATGCAC
1 ATGATATG--T
*
151154933 ATGACATGT
1 ATGATATGT
*
151154942 ATGATATGCAC
1 ATGATATG--T
151154953 ATGATATGT
1 ATGATATGT
151154962 ATGATATG
1 ATGATATG
151154970 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:151154936 original size:20 final size:20
Alignment explanation
Indices: 151154911--151154973 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
151154901 ATTTTGAAAA
151154911 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
151154931 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
151154951 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
151154971 ACA
1 ACA
151154974 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:151155097 original size:47 final size:47
Alignment explanation
Indices: 151155028--151155125 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
151155018 AGGAAGTGCA
151155028 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
* *
151155075 AAAGGGCTTATGCCCTATTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
151155123 AAA
1 AAA
151155126 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 21 0.45
48 16 0.34
49 10 0.21
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:151155142 original size:25 final size:24
Alignment explanation
Indices: 151155027--151155146 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
151155017 GAGGAAGTGC
151155027 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
151155051 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
151155075 -AAAGGGCTTATGCCCTATTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
151155098 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
151155123 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
151155147 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
23 27 0.32
24 30 0.35
25 19 0.22
26 9 0.11
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:151155375 original size:31 final size:31
Alignment explanation
Indices: 151155340--151155403 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
151155330 CGTTTACAGT
*
151155340 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
151155371 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
151155402 AA
1 AA
151155404 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:151157825 original size:49 final size:49
Alignment explanation
Indices: 151157757--151158090 Score: 595
Period size: 49 Copynumber: 6.9 Consensus size: 49
151157747 GTATGAGATG
151157757 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
151157806 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
151157853 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTCAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
151157902 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
151157951 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
151158000 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
151158047 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
151158091 TATATGTGTG
Statistics
Matches: 274, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 88 0.32
49 186 0.68
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:151157919 original size:96 final size:96
Alignment explanation
Indices: 151157755--151158090 Score: 636
Period size: 96 Copynumber: 3.5 Consensus size: 96
151157745 ATGTATGAGA
151157755 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
151157820 GGCCTAATGGCCAATGTGATGAATGTGAAAG
66 GGCCTAATGGCCAATGTGATGAATGTGAAAG
* *
151157851 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTCAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
151157916 GGCCTAATGGCCAATGTGATGAATGTGAAAG
66 GGCCTAATGGCCAATGTGATGAATGTGAAAG
151157947 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
151158012 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG
64 AAGGCCTAATGGCCAATGTGATGAATGTGAAAG
151158045 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
151158091 TATATGTGTG
Statistics
Matches: 234, Mismatches: 4, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
96 140 0.60
98 94 0.40
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (96 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:151158123 original size:145 final size:144
Alignment explanation
Indices: 151157755--151158090 Score: 602
Period size: 145 Copynumber: 2.3 Consensus size: 144
151157745 ATGTATGAGA
151157755 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* *
151157820 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
151157885 ATGAATGTCAAAGTG
131 ATGAATGTCAAAG-G
*
151157900 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
151157965 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATG
*
151158030 TGATGAATGTGAAA-G
129 TGATGAATGTCAAAGG
151158045 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
151158091 TATATGTGTG
Statistics
Matches: 184, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
145 142 0.77
147 42 0.23
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (144 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
ATGAATGTCAAAGG
Found at i:151158149 original size:50 final size:50
Alignment explanation
Indices: 151158090--151158187 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
151158080 TGAATGTGAA
*
151158090 ATATATGTGTGATGTGTATATGTGGTAAAGCCGAATGGCTAATATGAAAC
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAC
*
151158140 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAA
151158188 TGTTGTAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.33
Consensus pattern (50 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAC
Found at i:151158281 original size:37 final size:37
Alignment explanation
Indices: 151158227--151158317 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
151158217 AACTTGGAAA
*
151158227 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
151158265 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
151158302 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
151158318 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:151165749 original size:18 final size:18
Alignment explanation
Indices: 151165716--151165763 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
151165706 TTTGCCGTAC
* *
151165716 AAGAGAGAAACAAAAACA
1 AAGAAAGAAAAAAAAACA
*
151165734 AAGAAAGAAAAAAAAAAGA
1 AAGAAAG-AAAAAAAAACA
*
151165753 AAGGAAGAAAA
1 AAGAAAGAAAA
151165764 GTGTTCATCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (18 bp):
AAGAAAGAAAAAAAAACA
Found at i:151165755 original size:19 final size:19
Alignment explanation
Indices: 151165727--151165763 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
151165717 AGAGAGAAAC
151165727 AAAAACAAAGAAAGAAAAA
1 AAAAACAAAGAAAGAAAAA
* *
151165746 AAAAAGAAAGGAAGAAAA
1 AAAAACAAAGAAAGAAAA
151165764 GTGTTCATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAACAAAGAAAGAAAAA
Found at i:151167053 original size:40 final size:40
Alignment explanation
Indices: 151166994--151167100 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
151166984 CAATTGAATG
* * * *
151166994 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
151167034 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
151167074 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
151167101 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:151167120 original size:40 final size:39
Alignment explanation
Indices: 151167035--151167161 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
151167025 CTGGAAATTA
* * *
151167035 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
151167073 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
151167115 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
151167155 TATCCGG
1 TATCCGG
151167162 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:151173796 original size:17 final size:18
Alignment explanation
Indices: 151173764--151173800 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
151173754 CGTACATGAG
*
151173764 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
151173782 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
151173799 AG
1 AG
151173801 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:151173808 original size:17 final size:18
Alignment explanation
Indices: 151173764--151173800 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
151173754 CGTACATGAG
*
151173764 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
151173782 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
151173799 AG
1 AG
151173801 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:151175098 original size:40 final size:40
Alignment explanation
Indices: 151175039--151175145 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
151175029 CAATTGAATG
* * * *
151175039 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
151175079 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
151175119 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
151175146 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:151175165 original size:40 final size:39
Alignment explanation
Indices: 151175080--151175206 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
151175070 CTGGAAATTA
* * *
151175080 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
151175118 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
151175160 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
151175200 TATCCGG
1 TATCCGG
151175207 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:151180886 original size:2 final size:2
Alignment explanation
Indices: 151180879--151180913 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
151180869 TAAGTTGACT
151180879 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
151180914 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:151184182 original size:34 final size:33
Alignment explanation
Indices: 151184139--151184204 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 33
151184129 TGCATATCTG
* * * *
151184139 CACTATACTGTTACTGTGATTGGCTCAGGCCCA
1 CACTATACTGATACTGTAATGGGCTAAGGCCCA
151184172 CACTGATACTGATACTGTAATGGGCTAAGGCCC
1 CACT-ATACTGATACTGTAATGGGCTAAGGCCC
151184205 TGATTGAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (33 bp):
CACTATACTGATACTGTAATGGGCTAAGGCCCA
Found at i:151186925 original size:40 final size:40
Alignment explanation
Indices: 151186863--151187049 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
151186853 CATTGGAATG
* * * * *
151186863 ATATCCGGGCTAAGTCCTGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
151186903 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
151186943 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
151186983 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
151187023 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
151187050 CGAGCGAGTC
Statistics
Matches: 121, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 114 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:151186997 original size:80 final size:80
Alignment explanation
Indices: 151186863--151187016 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
151186853 CATTGGAATG
* * * ** *
151186863 ATATCCGGGCTAAGTCCTGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
151186928 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
151186943 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
151187008 ATCGTGCGA
66 ATCGTGCGA
151187017 ATCACTATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:151187069 original size:80 final size:80
Alignment explanation
Indices: 151186902--151187084 Score: 181
Period size: 80 Copynumber: 2.3 Consensus size: 80
151186892 TGCTAGTAAT
* * * *** * *
151186902 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAACCGGGCTAAGACCCGAAGAC
* * * *
151186967 ATTTGTGCAAGTTAC
66 AATCGAGCAAGTCAC
* * * *
151186982 CAAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAACCGGGCTAGGTCCCGAAGAC
1 TATATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAACCGGGCTAAGACCCGAAGAC
* *
151187047 AATCGAGCGAGTCGC
66 AATCGAGCAAGTCAC
151187062 TATATCC-GGTTAA-ATCCCGAAGG
1 TATATCCGGGTTAAGA-CCCGAAGG
151187085 TACGTGATTC
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 67 0.82
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
TATATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAACCGGGCTAAGACCCGAAGAC
AATCGAGCAAGTCAC
Found at i:151192247 original size:29 final size:29
Alignment explanation
Indices: 151192208--151192286 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
151192198 CTTAATAATC
*
151192208 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
151192238 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
151192267 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
151192287 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:151192944 original size:2 final size:2
Alignment explanation
Indices: 151192926--151192965 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
151192916 TGATGGCCGA
* *
151192926 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
151192966 CAACTATACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:151205034 original size:40 final size:40
Alignment explanation
Indices: 151204989--151205155 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
151204979 CGGAATATAA
151204989 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
151205029 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
151205069 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
151205109 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
151205148 CCGGATAT
1 CCGGATAT
151205156 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151205139 original size:80 final size:79
Alignment explanation
Indices: 151205005--151205153 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
151204995 ATAATCACGT
* *
151205005 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
151205070 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
151205085 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
151205148 CCGGAT
64 CCGGAT
151205154 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:151208016 original size:18 final size:18
Alignment explanation
Indices: 151207993--151208033 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
151207983 GTCCAATGAT
151207993 ATCAAAATACTTGAATTC
1 ATCAAAATACTTGAATTC
*
151208011 ATCAAAATATTTGAATTC
1 ATCAAAATACTTGAATTC
151208029 ATCAA
1 ATCAA
151208034 TACCCAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (18 bp):
ATCAAAATACTTGAATTC
Found at i:151208967 original size:42 final size:42
Alignment explanation
Indices: 151208855--151209008 Score: 202
Period size: 42 Copynumber: 3.6 Consensus size: 42
151208845 TACCGTACCA
* * * *
151208855 ATGCCATATCCTAGATATGGTCTTACATGTCA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* **
151208897 ATGCCAATAGCCCACCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
151208940 ATTCCATATCCCAGATATGGTCTTACACAAAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
151208982 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
151209009 TGTAATCTCA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 65 0.67
43 32 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:151209682 original size:49 final size:49
Alignment explanation
Indices: 151209629--151209729 Score: 184
Period size: 49 Copynumber: 2.1 Consensus size: 49
151209619 TACATTTCCT
*
151209629 ACCATTAGACATAAAAATACACAAATATCAATCATGGGTAAAATTTTAG
1 ACCATTAGACATAAAAATAAACAAATATCAATCATGGGTAAAATTTTAG
*
151209678 ACCATTAGACATCAAAATAAACAAATATCAATCATGGGTAAAATTTTAG
1 ACCATTAGACATAAAAATAAACAAATATCAATCATGGGTAAAATTTTAG
151209727 ACC
1 ACC
151209730 TTGATTATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.26
Consensus pattern (49 bp):
ACCATTAGACATAAAAATAAACAAATATCAATCATGGGTAAAATTTTAG
Found at i:151210813 original size:29 final size:29
Alignment explanation
Indices: 151210780--151210848 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
151210770 ACCCCAGGGG
*
151210780 ACACACGGCTGTGTAAATGACCGTGTATC
1 ACACATGGCTGTGTAAATGACCGTGTATC
* *
151210809 ACACATGGCTGTGTACATGATCGTGTATC
1 ACACATGGCTGTGTAAATGACCGTGTATC
151210838 ACACATGGCTG
1 ACACATGGCTG
151210849 AGACACACAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (29 bp):
ACACATGGCTGTGTAAATGACCGTGTATC
Found at i:151212598 original size:21 final size:20
Alignment explanation
Indices: 151212570--151212608 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
151212560 CAAAACCTGT
151212570 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
* *
151212590 ATAATCTATGATTAAACAT
1 ATAA-CTATCATCAAACAT
151212609 CAAAATACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:151215753 original size:40 final size:40
Alignment explanation
Indices: 151215657--151215874 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
151215647 CGAATGGTGT
* * * *
151215657 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
151215698 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
151215738 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
151215778 CCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
151215817 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
151215857 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
151215875 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.22
40 95 0.62
41 25 0.16
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:151215859 original size:79 final size:79
Alignment explanation
Indices: 151215656--151215888 Score: 252
Period size: 79 Copynumber: 2.9 Consensus size: 79
151215646 TCGAATGGTG
* * * * *
151215656 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTTAAGTCCCGAAGGCATT
*
151215721 TGTGCGAGTTACCAAA
64 CGTGCGAGTTACCAAA
* * * * *
151215737 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT-CCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTTAAGTCCCGAAGGCATTC
*
151215801 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * * * * *
151215816 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTTAAGTCCCGAAGGCATTC
*
151215881 GAGCGAGT
65 GTGCGAGT
151215889 CGCTATATCC
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 2 0.02
79 65 0.52
80 28 0.22
81 31 0.25
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:151215895 original size:40 final size:40
Alignment explanation
Indices: 151215817--151215900 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
151215807 GTTACTAAAT
* * *
151215817 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
151215857 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
151215897 CCGG
1 CCGG
151215901 TTAAATTCGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:151222577 original size:39 final size:39
Alignment explanation
Indices: 151222496--151222736 Score: 383
Period size: 39 Copynumber: 6.2 Consensus size: 39
151222486 TATGGTAACC
* *
151222496 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
151222536 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
151222575 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
151222614 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
151222653 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
151222692 CGCACAATTGCCTTCGGGCTTAGCTCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
151222731 CGCACA
1 CGCACA
151222737 TTCATACACA
Statistics
Matches: 185, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 168 0.91
40 17 0.09
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:151227135 original size:40 final size:40
Alignment explanation
Indices: 151227034--151227252 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
151227024 AGAATGGTGT
* * * *
151227034 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
151227075 CCGGG-TCAATTCCCGTAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
151227115 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
151227155 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
151227195 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
151227235 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
151227253 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 130 0.84
41 24 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:151227248 original size:120 final size:121
Alignment explanation
Indices: 151227034--151227252 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
151227024 AGAATGGTGT
* * * *
151227034 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGTAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
151227099 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
151227155 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
151227218 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
151227253 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.69
121 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:151227273 original size:40 final size:40
Alignment explanation
Indices: 151227085--151227278 Score: 149
Period size: 40 Copynumber: 4.8 Consensus size: 40
151227075 CCGGGTCAAT
* * * * * * * *
151227085 TCCCGTAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * * * * *
151227125 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* *
151227165 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCCGGGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCT-ATG
* *
151227205 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * *
151227245 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
151227279 TTAAATTCTG
Statistics
Matches: 135, Mismatches: 15, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 128 0.95
41 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
Found at i:151227286 original size:80 final size:80
Alignment explanation
Indices: 151227101--151227278 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 80
151227091 AGGCATTTGT
* * * * * * * * *
151227101 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
* * *
151227166 CCCGAAGGCATTCGT
66 CCCGAAGACAATCGA
* * * *
151227181 GCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
1 GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
151227246 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
* *
151227261 GCGAGTCGCTATATCCGG
1 GCGAGTCACTAAATCCGG
151227279 TTAAATTCTG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (80 bp):
GCGAGTCACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
CCCGAAGACAATCGA
Found at i:151231161 original size:43 final size:43
Alignment explanation
Indices: 151231080--151231205 Score: 105
Period size: 43 Copynumber: 2.9 Consensus size: 43
151231070 ATACCGTACA
* * * * *
151231080 ATGCCAATGTCCCAGATATGGTCTTACATGTA-ATCACATAACG
1 ATGCCAACGTCCCAGACAAGGTCTTACACG-AGAACACATAACG
* **
151231123 ATGCC-ACTGTCCTC-GACAAGGTCTTACTCGAGAACACATATTG
1 ATGCCAAC-GTCC-CAGACAAGGTCTTACACGAGAACACATAACG
* **
151231166 ATTCCAACGTCCCAGACGTGGTCTTACACGAGAACACATA
1 ATGCCAACGTCCCAGACAAGGTCTTACACGAGAACACATA
151231206 TTGGAAATCC
Statistics
Matches: 66, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
42 3 0.05
43 60 0.91
44 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGTCTTACACGAGAACACATAACG
Found at i:151239604 original size:40 final size:40
Alignment explanation
Indices: 151239477--151239606 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
151239467 ATGCTGGAAA
* *
151239477 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
151239517 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
151239557 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
151239597 TTATATCCGG
1 TTATATCCGG
151239607 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:151247712 original size:40 final size:40
Alignment explanation
Indices: 151247585--151247714 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
151247575 ATGCTGGAAA
* *
151247585 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
151247625 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
151247665 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
151247705 TTATATCCGG
1 TTATATCCGG
151247715 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:151254762 original size:9 final size:9
Alignment explanation
Indices: 151254750--151254806 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
151254740 TTTGATAAAC
151254750 ATGATATGT
1 ATGATATGT
*
151254759 ATGATATGCAC
1 ATGATATG--T
*
151254770 ATGACATGT
1 ATGATATGT
151254779 ATGATATGT
1 ATGATATGT
151254788 ACATGATATGT
1 --ATGATATGT
151254799 ATGATATG
1 ATGATATG
151254807 CACATGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:151254773 original size:20 final size:20
Alignment explanation
Indices: 151254748--151254818 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
151254738 ATTTTGATAA
151254748 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
151254768 ACATGACATGTATGATATGT
1 ACATGATATGTATGATATGC
151254788 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
151254808 ACATGAGATGT
1 ACATGATATGT
151254819 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:151254895 original size:23 final size:23
Alignment explanation
Indices: 151254865--151255031 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
151254855 AGGAAGTGCA
151254865 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
151254888 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
151254912 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
151254936 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151254959 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151254982 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
151255005 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
151255029 AAA
1 AAA
151255032 AGAGGCTAGG
Statistics
Matches: 139, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
23 71 0.51
24 68 0.49
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:151254920 original size:24 final size:23
Alignment explanation
Indices: 151254864--151255053 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
151254854 GAGGAAGTGC
151254864 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
151254887 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
151254910 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
151254934 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
151254958 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
151254981 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
151255005 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
151255029 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
151255053 A
1 A
151255054 TGATAAAGCA
Statistics
Matches: 156, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
23 66 0.42
24 80 0.51
25 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.