Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 489 of 770
Found at i:151254932 original size:47 final size:47
Alignment explanation
Indices: 151254863--151255031 Score: 286
Period size: 47 Copynumber: 3.6 Consensus size: 47
151254853 GGAGGAAGTG
151254863 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
151254910 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
151254958 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
151255004 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
151255032 AGAGGCTAGG
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 22 0.19
47 71 0.62
48 22 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:151275027 original size:30 final size:30
Alignment explanation
Indices: 151274993--151275053 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
151274983 TCCTTAACTC
151274993 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
151275023 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
151275053 A
1 A
151275054 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:151277274 original size:40 final size:39
Alignment explanation
Indices: 151277230--151277414 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 39
151277220 GCTACTCGTT
* * * *
151277230 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATT-TAGTAACTCGCA
151277270 CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
151277309 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAACTCGCA
* *
151277349 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
151277390 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGTCCGGA
151277415 CATCATTCGA
Statistics
Matches: 134, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 36 0.27
40 87 0.65
41 11 0.08
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:151277401 original size:80 final size:79
Alignment explanation
Indices: 151277230--151277414 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 79
151277220 GCTACTCGTT
* * *
151277230 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGACTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAGTCCGG
*
151277294 ATTTAGTAACTCGCA
65 ATTTAGTAACTAGCA
*
151277309 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAGTCCG
*
151277373 GATTTAGTCACTTAGCA
64 GATTTAGTAAC-TAGCA
151277390 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151277415 CATCATTCGA
Statistics
Matches: 94, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
78 3 0.03
79 43 0.46
80 37 0.39
81 11 0.12
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGTCCGGA
TTTAGTAACTAGCA
Found at i:151285431 original size:40 final size:39
Alignment explanation
Indices: 151285387--151285571 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 39
151285377 GCTACTCGTT
* * * *
151285387 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATT-TAGTAACTCGCA
151285427 CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
151285466 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAACTCGCA
* *
151285506 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
151285547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGTCCGGA
151285572 CATCATTCGA
Statistics
Matches: 134, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 36 0.27
40 87 0.65
41 11 0.08
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:151285558 original size:80 final size:79
Alignment explanation
Indices: 151285387--151285571 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 79
151285377 GCTACTCGTT
* * *
151285387 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGACTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAGTCCGG
*
151285451 ATTTAGTAACTCGCA
65 ATTTAGTAACTAGCA
*
151285466 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAGTCCG
*
151285530 GATTTAGTCACTTAGCA
64 GATTTAGTAAC-TAGCA
151285547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
151285572 CATCATTCGA
Statistics
Matches: 94, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
78 3 0.03
79 43 0.46
80 37 0.39
81 11 0.12
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAGTCCGGA
TTTAGTAACTAGCA
Found at i:151288949 original size:28 final size:28
Alignment explanation
Indices: 151288881--151288972 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
151288871 GATATGACAT
* *
151288881 TGTGTTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
151288908 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
151288933 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
151288961 TGTGCTAAGTGA
1 TGTGCTAAGTGA
151288973 GAAATTTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
24 20 0.34
25 2 0.03
27 1 0.02
28 35 0.60
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:151289073 original size:51 final size:51
Alignment explanation
Indices: 151288996--151289096 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
151288986 TGAACCTTAG
* *
151288996 GAATAATATAGGTTTGGACAAGAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACAAGAGTGTGGTACTATGTGAAGGCCACTTTGT
151289047 GAATAAAATAGCTTTGGACACA-AGTGTGGTACTATGTGAAGGCCACTTTG
1 GAATAAAATAGCTTTGGACA-AGAGTGTGGTACTATGTGAAGGCCACTTTG
151289097 GCTACAAAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 46 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACAAGAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:151291915 original size:28 final size:28
Alignment explanation
Indices: 151291868--151291936 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
151291858 ATTTAAACCC
151291868 TAGGGGT-ATATT-GGTAATTTTGCTCTT
1 TAGGGGTAAT-TTCGGTAATTTTGCTCTT
151291895 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
151291923 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
151291937 TGTTCTACGT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 9 0.22
28 31 0.77
ACGTcount: A:0.19, C:0.09, G:0.28, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:151293477 original size:20 final size:20
Alignment explanation
Indices: 151293454--151293491 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
151293444 CACATCCAAA
*
151293454 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
151293474 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
151293492 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:151300644 original size:39 final size:39
Alignment explanation
Indices: 151300589--151300804 Score: 294
Period size: 39 Copynumber: 5.6 Consensus size: 39
151300579 TTCCAACCCA
* * *
151300589 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCAAG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
151300628 AATGCCTTCGGGACTTAGCCTGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
151300667 AATGCCTTCGGGACTTAACCCGGATATAATA-CAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
** *
151300705 AATGCCTTCGGGACTTAATCAGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
151300744 AATGCCTTCGGGACTTAGCCCGGATATAAATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATAT-AATATCAGCACG
* * *
151300782 AAGGCCTGCGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
151300805 TTAAAATCCT
Statistics
Matches: 160, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 56 0.35
39 98 0.61
40 6 0.04
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:151300730 original size:77 final size:78
Alignment explanation
Indices: 151300589--151300772 Score: 298
Period size: 77 Copynumber: 2.4 Consensus size: 78
151300579 TTCCAACCCA
* * *
151300589 AATGCCTTCGGAACTTAGCCCGGATATAACATCAGCAAGAATGCCTTCGGGACTTAGCCTGGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAACATCAGCAAGAATGCCTTCGGGACTTAACCAGGATA
151300654 TAATATCAGCACG
66 TAATATCAGCACG
* * * *
151300667 AATGCCTTCGGGACTTAACCCGGATATAATA-CAGCACGAATGCCTTCGGGACTTAATCAGGATA
1 AATGCCTTCGGGACTTAGCCCGGATATAACATCAGCAAGAATGCCTTCGGGACTTAACCAGGATA
151300731 TAATATCAGCACG
66 TAATATCAGCACG
151300744 AATGCCTTCGGGACTTAGCCCGGATATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
151300773 ATCTCACACA
Statistics
Matches: 98, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 70 0.71
78 28 0.29
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACATCAGCAAGAATGCCTTCGGGACTTAACCAGGATA
TAATATCAGCACG
Found at i:151309297 original size:46 final size:46
Alignment explanation
Indices: 151309230--151309401 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
151309220 TAACTGCCCC
* *
151309230 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
151309276 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
151309324 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
151309369 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
151309402 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:151309342 original size:93 final size:93
Alignment explanation
Indices: 151309235--151309405 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
151309225 GCCCCTAAGT
* * *
151309235 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151309300 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
151309328 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151309393 CGAGTTCGGATGC
66 CGAGTTCGGATGC
151309406 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:151311477 original size:39 final size:39
Alignment explanation
Indices: 151311420--151311634 Score: 272
Period size: 39 Copynumber: 5.5 Consensus size: 39
151311410 TTCCAACCCA
* * * **
151311420 AATGCCTTCGGAACTTAGCCCAGATTTAACATCAATACG
1 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
*
151311459 AATGCCTTCGGGAATTAGCCCAGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
* *
151311498 AATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
* *
151311537 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
* *
151311576 AATGCCTTCGGGACTTAGCCCGGATATAAATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCAGATAT-AATATCAGCACG
* * *
151311614 AAGGCCTGCGGGTCTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
151311635 TGTTAAAATC
Statistics
Matches: 159, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 18 0.11
39 135 0.85
40 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCAGATATAATATCAGCACG
Found at i:151335652 original size:43 final size:43
Alignment explanation
Indices: 151335481--151335653 Score: 176
Period size: 43 Copynumber: 4.0 Consensus size: 43
151335471 GACATAAGAT
* *
151335481 TCGATATGTG-TTATCATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATTTGATTA-CATGTAAGACCACGTCTGGGACGTTGGCA
* * * *
151335524 TCGACT-TATGATTTACGTGTAAGACCACGTCTGGGACATTGGTA
1 TCGA-TATTTGA-TTACATGTAAGACCACGTCTGGGACGTTGGCA
* * *
151335568 TCG-TATTTGATTTCGTGTAAGACC-CTCTCTGGGACAG-TGGCA
1 TCGATATTTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCA
*
151335610 TCGATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
151335653 T
1 T
151335654 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.28
43 43 0.40
44 30 0.28
45 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:151338304 original size:44 final size:42
Alignment explanation
Indices: 151338234--151338389 Score: 145
Period size: 43 Copynumber: 3.6 Consensus size: 42
151338224 CATATGATTC
* ** * *
151338234 TGATTATCGTGTAAGACCACGTCTAGGATGTTGGCATCA-ATT
1 TGATT-TCGTGTAAGACCATGTCTAGGACATCGACATCATATT
151338276 TGAGATTTACGTGTAAGACCATGTCTAGGACATCGACATCATATT
1 T--GATTT-CGTGTAAGACCATGTCTAGGACATCGACATCATATT
* * *
151338321 TGATTTTGTGTAAGACCATGTCTGGGACAAT-GGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTAGGAC-ATCGACATC-ATATT
* * *
151338364 TGATTACATGTAAGACCACGTCTAGG
1 TGATTTCGTGTAAGACCATGTCTAGG
151338390 GCATTGGCAT
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 26 0.27
43 34 0.36
44 31 0.33
45 4 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTAGGACATCGACATCATATT
Found at i:151344223 original size:29 final size:29
Alignment explanation
Indices: 151344190--151344271 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
151344180 TGACGAGATA
*
151344190 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
151344219 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
151344248 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
151344272 AAAAAATAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:151351167 original size:40 final size:39
Alignment explanation
Indices: 151351002--151351185 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
151350992 AAATTGAATG
* * *
151351002 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
151351042 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
151351082 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
151351122 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
151351161 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
151351186 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:151351210 original size:80 final size:81
Alignment explanation
Indices: 151351042--151351230 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
151351032 GCTGGAAATT
* * * *
151351042 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
151351107 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
151351123 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
151351186 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
151351202 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
151351231 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:151359287 original size:40 final size:39
Alignment explanation
Indices: 151359122--151359305 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
151359112 AAATTGAATG
* * *
151359122 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
151359162 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
151359202 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
151359242 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
151359281 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
151359306 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:151359330 original size:80 final size:81
Alignment explanation
Indices: 151359162--151359350 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
151359152 GCTGGAAATT
* * * *
151359162 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
151359227 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
151359243 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
151359306 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
151359322 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
151359351 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:151363726 original size:40 final size:40
Alignment explanation
Indices: 151363681--151363847 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
151363671 CGGAATATAA
151363681 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
151363721 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
151363761 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
151363801 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
151363840 CCGGATAT
1 CCGGATAT
151363848 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151365680 original size:34 final size:34
Alignment explanation
Indices: 151365615--151365691 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
151365605 GTTTGCATTT
* ** *
151365615 CTGTTACTGTTACTATAATGGGCTATTGCCTATA
1 CTGTTACTGTTACTATAATAGGCTAAGGCCTACA
* *
151365649 CTGTTATTGTTACTATAATAGTCTAAGGCCTACA
1 CTGTTACTGTTACTATAATAGGCTAAGGCCTACA
*
151365683 CTGATACTG
1 CTGTTACTG
151365692 AACAGTCATT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (34 bp):
CTGTTACTGTTACTATAATAGGCTAAGGCCTACA
Found at i:151375779 original size:23 final size:21
Alignment explanation
Indices: 151375737--151375779 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
151375727 GATCATTTTG
*
151375737 GCTTACCTCATTCTTACCTTT
1 GCTTACCTCATTCTGACCTTT
*
151375758 GCTTACCATCATTTCTGGCCTT
1 GCTTACC-TCA-TTCTGACCTT
151375780 GGTTTTGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.14, C:0.33, G:0.09, T:0.44
Consensus pattern (21 bp):
GCTTACCTCATTCTGACCTTT
Found at i:151382151 original size:15 final size:15
Alignment explanation
Indices: 151382131--151382190 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
151382121 TAATATAATT
151382131 AATGATATATATAAA
1 AATGATATATATAAA
151382146 AATGATATATACT-AA
1 AATGATATATA-TAAA
* *
151382161 AATCATATAATATACA
1 AATGATAT-ATATAAA
*
151382177 AATAATATATATAA
1 AATGATATATATAA
151382191 CGAATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
15 26 0.68
16 12 0.32
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.33
Consensus pattern (15 bp):
AATGATATATATAAA
Found at i:151382279 original size:17 final size:18
Alignment explanation
Indices: 151382224--151382291 Score: 63
Period size: 17 Copynumber: 3.8 Consensus size: 18
151382214 AATGTATAGT
151382224 AAAATAAATAATATAA-A
1 AAAATAAATAATATAACA
* *
151382241 AATACATATAA-CATATAGCA
1 AA-A-ATA-AATAATATAACA
151382261 AAAATAAA-AATATAAC-
1 AAAATAAATAATATAACA
151382277 AAAATAAATAATATA
1 AAAATAAATAATATA
151382292 TATAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 8 0.19
17 16 0.38
18 4 0.10
19 9 0.21
20 5 0.12
ACGTcount: A:0.69, C:0.06, G:0.01, T:0.24
Consensus pattern (18 bp):
AAAATAAATAATATAACA
Found at i:151382295 original size:38 final size:39
Alignment explanation
Indices: 151382224--151382304 Score: 89
Period size: 38 Copynumber: 2.1 Consensus size: 39
151382214 AATGTATAGT
*
151382224 AAAATAAATAATATAAAAATACATATAACATAT-A-GCA
1 AAAATAAATAATATAAAAATAAATATAACATATAATGCA
*
151382261 AAAATAAA-AATATAACAAAATAAATA-ATATATATAATGCA
1 AAAATAAATAATAT-A-AAAATAAATATA-ACATATAATGCA
151382301 AAAA
1 AAAA
151382305 ATATATATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
36 5 0.14
37 10 0.27
38 14 0.38
39 1 0.03
40 7 0.19
ACGTcount: A:0.68, C:0.06, G:0.02, T:0.23
Consensus pattern (39 bp):
AAAATAAATAATATAAAAATAAATATAACATATAATGCA
Found at i:151385099 original size:25 final size:26
Alignment explanation
Indices: 151385071--151385168 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
151385061 CTCTTTTAAT
*
151385071 AACTGGGGCAAAAGCCC-TTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
151385096 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
151385122 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
151385148 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
151385169 GCACTTACTC
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 16 0.25
26 49 0.75
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:151385243 original size:20 final size:20
Alignment explanation
Indices: 151385218--151385332 Score: 146
Period size: 20 Copynumber: 5.8 Consensus size: 20
151385208 TTATGAATAC
*
151385218 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
151385238 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
151385258 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
151385278 ATCATGTGCATTTTATACCT
1 ATCATGTGCATATCATACAT
*
151385298 ATCATGTGCACATCATATCA-
1 ATCATGTGCATATCATA-CAT
151385318 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
151385333 TCCCACGTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
18 7 0.08
20 75 0.90
21 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:151389358 original size:70 final size:71
Alignment explanation
Indices: 151389208--151389370 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
151389198 GAGATGTATC
151389208 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151389273 AGGACA
66 AGGACA
151389279 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151389343 AGGACA
66 AGGACA
151389349 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
151389371 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:151396814 original size:41 final size:41
Alignment explanation
Indices: 151396769--151396886 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
151396759 TGAAAGATAA
151396769 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
151396810 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151396840 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151396881 ATGTAG
1 ATGTAG
151396887 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:151396825 original size:71 final size:71
Alignment explanation
Indices: 151396737--151396900 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
151396727 GAGATGTATC
151396737 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151396802 AGGACA
66 AGGACA
151396808 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151396873 AGGACA
66 AGGACA
151396879 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
151396901 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:151400488 original size:68 final size:70
Alignment explanation
Indices: 151400416--151400613 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
151400406 ACACCCTGTA
* * * *
151400416 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
151400478 ATAAAT
65 ATAAAT
*
151400484 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
151400549 ATAAAT
65 ATAAAT
*
151400555 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
151400614 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:151400527 original size:41 final size:41
Alignment explanation
Indices: 151400482--151400599 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
151400472 TGAAAGATAA
151400482 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
151400523 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151400553 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151400594 ATGTAG
1 ATGTAG
151400600 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:151400539 original size:71 final size:71
Alignment explanation
Indices: 151400450--151400613 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
151400440 GAGATGTATC
151400450 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151400515 AGGACA
66 AGGACA
151400521 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151400586 AGGACA
66 AGGACA
151400592 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
151400614 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:151408052 original size:68 final size:70
Alignment explanation
Indices: 151407980--151408177 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
151407970 ACACCCTGTA
* * * *
151407980 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
151408042 ATAAAT
65 ATAAAT
*
151408048 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
151408113 ATAAAT
65 ATAAAT
*
151408119 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
151408178 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:151408091 original size:41 final size:41
Alignment explanation
Indices: 151408046--151408163 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
151408036 TGAAAGATAA
151408046 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
151408087 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151408117 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
151408158 ATGTAG
1 ATGTAG
151408164 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:151408103 original size:71 final size:71
Alignment explanation
Indices: 151408014--151408177 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
151408004 GAGATGTATC
151408014 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151408079 AGGACA
66 AGGACA
151408085 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
151408150 AGGACA
66 AGGACA
151408156 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
151408178 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:151413095 original size:43 final size:43
Alignment explanation
Indices: 151413031--151413159 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 43
151413021 CATAGGATTC
151413031 CGATATGTGTATT-CGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTG-ATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* **
151413074 CGTTATGTGATTACGTGTAAGACC-C-TACCTGGGACAATGGCAT
1 CGATATGTGATTACGTGTAAGACCACGT--CTGGGACGTTGGCAT
* * *
151413117 CGATATGTGACTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
151413160 TGTATGATAT
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.06
43 66 0.92
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:151423232 original size:27 final size:27
Alignment explanation
Indices: 151423202--151423793 Score: 592
Period size: 27 Copynumber: 22.1 Consensus size: 27
151423192 TATGTTGGTC
*
151423202 ATTTTAC-AATACAAGGGTATTTCGGTA
1 ATTTTACAAAT-CGAGGGTATTTCGGTA
* * *
151423229 ATTTTACACTAT-AAGGGTATTTCGATA
1 ATTTTACA-AATCGAGGGTATTTCGGTA
*
151423256 ATTTTACAAATCGAGGGTGTTTCGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
151423283 ATTTTACAAATCGAGGGTATTTCGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* *
151423310 ATTTTACAAATCGAGGGTGTTTCAGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * *
151423337 ATTTTACAAATTGAGGGTGTTTCGATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * *
151423364 ATTTTACAAATCCAGGGTGTTTCGATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * **
151423391 ATTTCACAAATCGAGAGTATTTTAGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * **
151423418 ATTTTTCAAATCGAGGATATTTTTGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * *
151423445 ATTTCAC-AATTGAGGGTATTTTGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
*
151423471 ATTTTACAAATCGGGGGTATTTCAGG-A
1 ATTTTACAAATCGAGGGTATTTC-GGTA
* *
151423498 ATTTTACAAATCGAGGGTGTTTCGATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * * * * *
151423525 ATTTCAAAAATTGAGAGTATTTTGATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* **
151423552 ATTTTACAAATTGAGGGTATTTCAATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* * *
151423579 ATTTCAC-AATCGAGGTTATTTCAGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
**
151423605 ATTTTACAAATCGAGGGTATTTTAGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
*
151423632 ATTTCAC-AATCGAGGGTATTTCGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* *
151423658 ATTTTACAAATCGAGGGTGTTTTGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
*
151423685 ATTTCACAAATCG-GGGTATTTCGGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
* *
151423711 ATTTTACAAATCAAAGGTATTTCAGG-A
1 ATTTTACAAATCGAGGGTATTTC-GGTA
* * * *
151423738 ATTTCAC-AA-CGAGGGTGTTTTGATA
1 ATTTTACAAATCGAGGGTATTTCGGTA
** *
151423763 ATTTTTTAAATCGAGGGTATTTCAGTA
1 ATTTTACAAATCGAGGGTATTTCGGTA
151423790 ATTT
1 ATTT
151423794 CACTTTATTA
Statistics
Matches: 471, Mismatches: 81, Indels: 26
0.81 0.14 0.04
Matches are distributed among these distances:
24 1 0.00
25 13 0.03
26 96 0.20
27 355 0.75
28 4 0.01
29 2 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTATTTCGGTA
Found at i:151426345 original size:17 final size:17
Alignment explanation
Indices: 151426323--151426357 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
151426313 GTTATAGCTT
151426323 ATGCCTCGAGACAGTTG
1 ATGCCTCGAGACAGTTG
*
151426340 ATGCCTTGAGACAGTTG
1 ATGCCTCGAGACAGTTG
151426357 A
1 A
151426358 AGCCACGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (17 bp):
ATGCCTCGAGACAGTTG
Found at i:151428565 original size:40 final size:40
Alignment explanation
Indices: 151428521--151428630 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
151428511 TTCACAATTT
* *
151428521 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
151428561 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
151428601 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
151428631 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:151436617 original size:40 final size:40
Alignment explanation
Indices: 151436573--151436682 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
151436563 TTCACAATTT
* *
151436573 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
151436613 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
151436653 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
151436683 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:151444990 original size:85 final size:86
Alignment explanation
Indices: 151444869--151445038 Score: 283
Period size: 85 Copynumber: 2.0 Consensus size: 86
151444859 TCGAATGATG
*
151444869 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCA-TT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
151444933 GTGCGAGTTACTAAATCCGGA
66 GTGCGAGTTACTAAATCCGGA
*
151444954 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
151445017 TTGTGCGAGTTACTAAATCCGG
64 TTGTGCGAGTTACTAAATCCGG
151445039 GATAAGTCCC
Statistics
Matches: 80, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
85 51 0.64
86 29 0.36
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (86 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGA
Found at i:151445088 original size:40 final size:40
Alignment explanation
Indices: 151444869--151445099 Score: 249
Period size: 40 Copynumber: 5.7 Consensus size: 40
151444859 TCGAATGATG
*
151444869 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
151444909 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151444948 TCCGGATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCC-G----GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151444994 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
151445034 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
151445075 T-CGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
151445100 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
39 14 0.08
40 112 0.67
41 5 0.03
44 1 0.01
45 17 0.10
46 19 0.11
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:151445106 original size:80 final size:78
Alignment explanation
Indices: 151444869--151445076 Score: 258
Period size: 85 Copynumber: 2.5 Consensus size: 78
151444859 TCGAATGATG
* *
151444869 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
151444933 GTGCGAGTTACTAAA
65 -TGCGAGTTACTAAA
*
151444948 TCCGGATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAATCCGGACTAAGATCCGAA
1 TCC-G----GGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAA
151445012 GGCATTTGTGCGAGTTACTAAA
59 GGCA-TT-TGCGAGTTACTAAA
*
151445034 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAATC
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
151445077 GGGCTATGTC
Statistics
Matches: 113, Mismatches: 5, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
79 4 0.04
80 28 0.25
81 7 0.06
84 2 0.02
85 45 0.40
86 27 0.24
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GCGAGTTACTAAA
Found at i:151449309 original size:40 final size:40
Alignment explanation
Indices: 151449142--151449311 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
151449132 GCTATAGTAA
* * *
151449142 TTATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGA
1 TTATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTGG
** * *
151449182 CCACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* * * *
151449222 TTAAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
* *
151449262 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
151449302 TTATATCCGG
1 TTATATCCGG
151449312 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 4 0.04
40 105 0.96
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
Found at i:151457180 original size:40 final size:40
Alignment explanation
Indices: 151457121--151457328 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
151457111 CAATTGAATG
* * * *
151457121 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
151457161 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
151457201 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
151457241 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
151457281 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
151457321 ATATCCGG
1 ATATCCGG
151457329 ATGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 135 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:151459670 original size:13 final size:13
Alignment explanation
Indices: 151459654--151459683 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
151459644 TATATATCGA
*
151459654 TTTCAAATATTTG
1 TTTCAAATATTTC
151459667 TTTCAAATATTTC
1 TTTCAAATATTTC
151459680 TTTC
1 TTTC
151459684 TCTAATACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTCAAATATTTC
Found at i:151468595 original size:93 final size:93
Alignment explanation
Indices: 151468483--151468654 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
151468473 GCCCATAAGT
* *
151468483 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151468548 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
151468576 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151468641 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
151468655 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:151468650 original size:46 final size:46
Alignment explanation
Indices: 151468475--151468650 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
151468465 TGTAACCCGC
* * *
151468475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
151468521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
151468571 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
151468614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
151468651 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:151471078 original size:30 final size:30
Alignment explanation
Indices: 151471034--151471122 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
151471024 CAAAGATAAC
151471034 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
151471063 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
151471093 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
151471123 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:151471082 original size:15 final size:15
Alignment explanation
Indices: 151471034--151471113 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
151471024 CAAAGATAAC
*
151471034 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
151471048 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
151471063 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
151471078 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
151471093 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
151471108 AAGAAA
1 AAGAAA
151471114 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:151471122 original size:15 final size:15
Alignment explanation
Indices: 151471045--151471122 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
151471035 AGAAAACCGA
151471045 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
151471060 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
151471074 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
151471089 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
151471105 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
151471120 ATA
1 ATA
151471123 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:151474182 original size:93 final size:93
Alignment explanation
Indices: 151474070--151474241 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
151474060 GCCCATAAGT
* *
151474070 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151474135 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
151474163 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
151474228 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
151474242 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:151474237 original size:46 final size:46
Alignment explanation
Indices: 151474062--151474237 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
151474052 TGTAACCCGC
* * *
151474062 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
151474108 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
151474158 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
151474201 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
151474238 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:151480375 original size:51 final size:51
Alignment explanation
Indices: 151480304--151480417 Score: 192
Period size: 51 Copynumber: 2.2 Consensus size: 51
151480294 CTGATCACAT
*
151480304 TTATCACTTGTCACTGATCAGATAAGTGTAGGTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
151480355 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* *
151480406 TTGTCGCTTGTC
1 TTATCACTTGTC
151480418 GCTTGTCGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:151480415 original size:7 final size:7
Alignment explanation
Indices: 151480405--151480431 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
151480395 CCACTTATCA
151480405 CTTGTCG
1 CTTGTCG
151480412 CTTGTCG
1 CTTGTCG
151480419 CTTGTCG
1 CTTGTCG
151480426 CTTGTC
1 CTTGTC
151480432 ACTTATCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.26, T:0.44
Consensus pattern (7 bp):
CTTGTCG
Found at i:151486949 original size:51 final size:51
Alignment explanation
Indices: 151486878--151486991 Score: 192
Period size: 51 Copynumber: 2.2 Consensus size: 51
151486868 CTGATCACAT
*
151486878 TTATCACTTGTCACTGATCAGATAAGTGTAGGTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
151486929 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* *
151486980 TTGTCGCTTGTC
1 TTATCACTTGTC
151486992 GCTTGTCACT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:151490772 original size:27 final size:28
Alignment explanation
Indices: 151490716--151490785 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
151490706 AAACTTGTAC
151490716 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
151490744 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
151490771 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
151490786 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:151490796 original size:27 final size:27
Alignment explanation
Indices: 151490716--151490797 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
151490706 AAACTTGTAC
* *
151490716 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
151490744 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
151490771 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
151490798 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:151501579 original size:78 final size:81
Alignment explanation
Indices: 151501440--151501621 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
151501430 TCGAATGATG
* *
151501440 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
151501505 GTGCGAGTTACTA-AA
66 GTGCGAGTTACTATAA
* * **
151501520 TCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
151501582 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
151501599 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
151501622 TGAACGAGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.55
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:151501637 original size:40 final size:40
Alignment explanation
Indices: 151501440--151501623 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
151501430 TCGAATGATG
* * *
151501440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
151501480 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
151501520 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151501558 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
151501599 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
151501624 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
38 27 0.21
39 19 0.15
40 74 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:151501654 original size:118 final size:118
Alignment explanation
Indices: 151501440--151501656 Score: 271
Period size: 118 Copynumber: 1.8 Consensus size: 118
151501430 TCGAATGATG
*
151501440 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
** *
151501505 GTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAA
66 GAACGAGTTACTAAATCCGGGCTAAACCCGAAGGCATTGTGCGAGTTACTAAA
* * * * *
151501558 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
* *
151501621 TTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
64 TTGAACGAGTTA-CTAAATCCGGGCTAAAC-CCGAAGG
151501657 TACGTGATTC
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
117 9 0.11
118 68 0.81
119 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAATCCGGGCTAAACCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:151509720 original size:40 final size:40
Alignment explanation
Indices: 151509621--151509806 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
151509611 TTGAATGATG
* * * *
151509621 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
151509661 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
151509701 TCTGGGTTAAGTCCGGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151509741 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
151509782 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
151509807 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:151509813 original size:80 final size:79
Alignment explanation
Indices: 151509674--151509829 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 79
151509664 GGACTAAGAT
* * * **
151509674 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCGGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
151509738 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
*
151509754 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
151509818 ATATCCGGTTAA
65 AAATCCGGTTAA
151509830 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 8 0.12
80 57 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:151514643 original size:28 final size:28
Alignment explanation
Indices: 151514603--151514661 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
151514593 AATTGCTTAG
151514603 TAAGTCCACATGTAAATAGCAAGTAACA
1 TAAGTCCACATGTAAATAGCAAGTAACA
151514631 TAAGTCCACATGTAAATAGCAAGTAACA
1 TAAGTCCACATGTAAATAGCAAGTAACA
151514659 TAA
1 TAA
151514662 CCATGCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (28 bp):
TAAGTCCACATGTAAATAGCAAGTAACA
Found at i:151521457 original size:14 final size:15
Alignment explanation
Indices: 151521440--151521468 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
151521430 ACAAAAAAAT
151521440 TTCACACAT-ATAAA
1 TTCACACATAATAAA
151521454 TTCACACATAATAAA
1 TTCACACATAATAAA
151521469 CGAAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:151523859 original size:46 final size:46
Alignment explanation
Indices: 151523809--151523984 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
151523799 TGGTTGAGCA
151523809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
151523855 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
151523900 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
151523948 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
151523985 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:151523965 original size:93 final size:93
Alignment explanation
Indices: 151523806--151523976 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
151523796 GGATGGTTGA
* *
151523806 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
151523871 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
151523899 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
151523964 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
151523977 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:151526977 original size:15 final size:15
Alignment explanation
Indices: 151526938--151527017 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
151526928 GTATCTTGGG
*
151526938 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
151526953 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
151526968 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
151526983 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
151526998 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
151527012 TTTCTT
1 TTTCTT
151527018 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:151527007 original size:30 final size:30
Alignment explanation
Indices: 151526929--151527016 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
151526919 CATAGTATCG
* * *
151526929 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
151526959 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
151526989 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
151527017 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:151529434 original size:46 final size:46
Alignment explanation
Indices: 151529384--151529559 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
151529374 TGGTTGAGCA
151529384 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
151529430 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
151529475 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
151529523 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
151529560 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:151529540 original size:93 final size:93
Alignment explanation
Indices: 151529381--151529551 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
151529371 GGATGGTTGA
* *
151529381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
151529446 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
151529474 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
151529539 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
151529552 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:151540014 original size:40 final size:40
Alignment explanation
Indices: 151539969--151540155 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
151539959 ATAACCACAA
* *
151539969 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
151540009 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
151540049 GCACAAATGCCTTCGGGTCTTAACCC-GATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
151540088 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
151540128 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
151540156 GTATCATTCA
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 38 0.28
40 94 0.70
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:151540092 original size:79 final size:78
Alignment explanation
Indices: 151539949--151540154 Score: 297
Period size: 79 Copynumber: 2.6 Consensus size: 78
151539939 TCTTCGGAAT
* * *
151539949 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCC-GATATAGCAACTCGCAC
151540013 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
*
151540028 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACA
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACA
151540093 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * * *
151540107 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCG
151540155 GGTATCATTC
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
79 77 0.67
80 38 0.33
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACAA
ATGCCTTCGGGTC
Found at i:151546721 original size:40 final size:40
Alignment explanation
Indices: 151546676--151546862 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
151546666 ATAACCACAA
* *
151546676 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
151546716 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
151546756 GCACAAATGCCTTCGGGTCTTAACCC-GATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
151546795 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
151546835 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
151546863 GTATCATTCA
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 38 0.28
40 94 0.70
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:151546799 original size:79 final size:78
Alignment explanation
Indices: 151546656--151546861 Score: 297
Period size: 79 Copynumber: 2.6 Consensus size: 78
151546646 TCTTCGGAAT
* * *
151546656 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCC-GATATAGCAACTCGCAC
151546720 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
*
151546735 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACA
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACA
151546800 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * * *
151546814 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCG
151546862 GGTATCATTC
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
79 77 0.67
80 38 0.33
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGATATAGCAACTCGCACAA
ATGCCTTCGGGTC
Found at i:151559063 original size:46 final size:47
Alignment explanation
Indices: 151558957--151559078 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
151558947 TGTCTTCGAC
** * *
151558957 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTAATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
151559007 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTAATTCCTGTCTCCAAAGCCAATATATCTAAT
*
151559053 ATGGACTTACATGGCTAATTTCTGTC
1 ATGGACTTACATGGCTAATTCCTGTC
151559079 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTAATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:151562538 original size:15 final size:17
Alignment explanation
Indices: 151562505--151562542 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
151562495 TTGGTGCCGA
151562505 TTTC-TTCTTCCTCTAT
1 TTTCTTTCTTCCTCTAT
151562521 TTTCTTTCTTCCT-T-T
1 TTTCTTTCTTCCTCTAT
151562536 TTTCTTT
1 TTTCTTT
151562543 TTCTTCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 5 0.24
17 8 0.38
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTCTTTCTTCCTCTAT
Found at i:151573225 original size:39 final size:40
Alignment explanation
Indices: 151573123--151573315 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
151573113 TTGAATGATA
* * * *
151573123 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGC-GAGTTACTAAT
* *
151573163 ATCCAGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTAAT
* *
151573204 TCCGGGCTAAG-CCAGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAT
* * *
151573243 TCCGGGTTGAGTCCTGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAT
* * * *
151573282 AACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 -TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGT
151573316 AGCTATATCC
Statistics
Matches: 127, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 65 0.51
41 24 0.19
42 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAT
Found at i:151580516 original size:14 final size:15
Alignment explanation
Indices: 151580499--151580527 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
151580489 ACACGAAAAT
151580499 TTCACACA-TATAAA
1 TTCACACATTATAAA
151580513 TTCACACATTATAAA
1 TTCACACATTATAAA
151580528 AACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:151585174 original size:24 final size:24
Alignment explanation
Indices: 151584930--151585172 Score: 432
Period size: 24 Copynumber: 10.1 Consensus size: 24
151584920 GCAAAGACCA
151584930 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
151584954 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
151584978 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
151585002 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
151585026 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
151585050 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
151585074 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
151585098 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
151585122 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
151585146 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
151585170 TAT
1 TAT
151585173 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:151593180 original size:24 final size:24
Alignment explanation
Indices: 151592938--151593178 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
151592928 GCAAAGACCA
151592938 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
151592962 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
151592986 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
151593010 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
151593034 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
151593058 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
151593082 TATGGCACTATGTGTGCGA-TT-C
1 TATGGCACTATGTGTGCGATTTAC
151593104 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
151593128 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
151593152 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
151593176 TAT
1 TAT
151593179 AGTCACATTC
Statistics
Matches: 211, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
22 20 0.09
23 4 0.02
24 187 0.89
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:151594642 original size:24 final size:24
Alignment explanation
Indices: 151594613--151594745 Score: 135
Period size: 24 Copynumber: 5.5 Consensus size: 24
151594603 TATCTAAAAT
*
151594613 GCACTATGTGTACAATTTATTA-A
1 GCACTATGTGTGCAATTTATTATA
151594636 TGCACTATGTGTGCAATTTATTATA
1 -GCACTATGTGTGCAATTTATTATA
* * *
151594661 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCAATTTATTATA
* ** *
151594685 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCAATTTATTATA
** *
151594709 GCACTATGTGTGCAA-ACATAATAA
1 GCACTATGTGTGCAATTTATTAT-A
151594733 GCACTATGTGTGC
1 GCACTATGTGTGC
151594746 CACATTCGGT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 2 0.02
24 92 0.97
25 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCAATTTATTATA
Found at i:151599655 original size:40 final size:40
Alignment explanation
Indices: 151599610--151599781 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 40
151599600 CGGAATATAA
151599610 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
151599650 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
151599690 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
151599730 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
*
151599769 CCGGATATCATCA
1 CCGGATATAATCA
151599782 ATTTCTCATG
Statistics
Matches: 109, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 16 0.15
40 93 0.85
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151607630 original size:40 final size:40
Alignment explanation
Indices: 151607585--151607751 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
151607575 CGGAATATAA
151607585 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
151607625 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
151607665 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
151607705 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
151607744 CCGGATAT
1 CCGGATAT
151607752 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151613023 original size:40 final size:40
Alignment explanation
Indices: 151612967--151613184 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 40
151612957 CATGAGCATT
* *
151612967 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
*
151613008 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** *
151613048 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
151613088 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * * * * *
151613128 AT-ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
151613168 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
151613185 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 140 0.92
41 7 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:151628854 original size:27 final size:26
Alignment explanation
Indices: 151628798--151628854 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
151628788 CAACCTTAAC
* *
151628798 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
151628824 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
151628851 CCTA
1 CCTA
151628855 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:151632000 original size:38 final size:38
Alignment explanation
Indices: 151631949--151632046 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 38
151631939 TGAAATGAGG
*
151631949 TGTTATTCAGGCTTAGTGCCTAGTAGGCTTAGAGCCGA
1 TGTTATTCAGGCTTAGTGCCTAGTAGGATTAGAGCCGA
** * *
151631987 TGTTATTCAGGCTTAGTGCCTAGTAGGATTAGTTCTGG
1 TGTTATTCAGGCTTAGTGCCTAGTAGGATTAGAGCCGA
* *
151632025 TGTTAATCAGGCTTAGAGCCTA
1 TGTTATTCAGGCTTAGTGCCTA
151632047 ACAAACTTAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (38 bp):
TGTTATTCAGGCTTAGTGCCTAGTAGGATTAGAGCCGA
Found at i:151632092 original size:22 final size:21
Alignment explanation
Indices: 151632067--151632118 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
151632057 TGCTTAGCAG
151632067 GCTTAGTGCTAGTGTTAATCAA
1 GCTTAGTGCTAGTGTTAATC-A
*
151632089 GCTTAGTGCTAGTGTTATTCA
1 GCTTAGTGCTAGTGTTAATCA
151632110 GACTTAGTG
1 G-CTTAGTG
151632119 AGTAGCACGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.38
Consensus pattern (21 bp):
GCTTAGTGCTAGTGTTAATCA
Found at i:151637245 original size:40 final size:40
Alignment explanation
Indices: 151637200--151637367 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
151637190 CGGAATATAA
151637200 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
151637240 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
151637280 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
151637320 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
151637360 CCGGATAT
1 CCGGATAT
151637368 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151645255 original size:40 final size:40
Alignment explanation
Indices: 151645210--151645376 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
151645200 CGGAATATAA
151645210 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
151645250 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
151645290 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
151645330 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
151645369 CCGGATAT
1 CCGGATAT
151645377 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:151650890 original size:13 final size:13
Alignment explanation
Indices: 151650872--151650899 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
151650862 AATATAGGGG
151650872 AAAATGTACCATT
1 AAAATGTACCATT
151650885 AAAATGTACCATT
1 AAAATGTACCATT
151650898 AA
1 AA
151650900 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:151658230 original size:32 final size:32
Alignment explanation
Indices: 151658194--151658255 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
151658184 AGCTTTTGGT
151658194 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
151658226 TTTTTCGTGTTGTCAAAGAGTTGAACAATG
1 TTTTTCATGTTGTCAAAGAGTTGAACAATG
151658256 AAAATAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:151666441 original size:6 final size:6
Alignment explanation
Indices: 151666430--151666508 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
151666420 GGGATCACTA
151666430 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
151666473 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
151666509 GAATAGAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
4 3 0.05
5 27 0.43
6 27 0.43
8 6 0.10
ACGTcount: A:0.48, C:0.16, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTAAT
Found at i:151666452 original size:20 final size:21
Alignment explanation
Indices: 151666426--151666471 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
151666416 AGCCGGGATC
151666426 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
151666447 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
151666467 ACTAA
1 ACTAA
151666472 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:151666496 original size:11 final size:11
Alignment explanation
Indices: 151666426--151666472 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
151666416 AGCCGGGATC
151666426 ACTAA-CTAAT
1 ACTAATCTAAT
151666436 ACTAATCTAAT
1 ACTAATCTAAT
151666447 -CTAA-CTAAT
1 ACTAATCTAAT
151666456 ACTAATCTAAT
1 ACTAATCTAAT
151666467 ACTAAT
1 ACTAAT
151666473 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:151666522 original size:14 final size:14
Alignment explanation
Indices: 151666505--151666532 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
151666495 CTCTAATACT
151666505 AATAGAATAGAAAA
1 AATAGAATAGAAAA
151666519 AATAGAATAGAAAA
1 AATAGAATAGAAAA
151666533 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:151674859 original size:18 final size:18
Alignment explanation
Indices: 151674780--151674873 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
151674770 CAAGGTCACG
*
151674780 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
151674798 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
151674816 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
151674834 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
151674852 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
151674867 ATCAATA
1 ATCAATA
151674874 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:151674860 original size:9 final size:9
Alignment explanation
Indices: 151674780--151674860 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
151674770 CAAGGTCACG
*
151674780 ATCAATAGC
1 ATCAATATC
* *
151674789 GTCACTATC
1 ATCAATATC
*
151674798 ATCAATAGC
1 ATCAATATC
* * *
151674807 GTCACTAGC
1 ATCAATATC
151674816 ATCAATATC
1 ATCAATATC
* * *
151674825 GTCACTAGC
1 ATCAATATC
151674834 ATCAATATC
1 ATCAATATC
* *
151674843 GTCACTATC
1 ATCAATATC
151674852 ATCAATATC
1 ATCAATATC
151674861 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:151677269 original size:21 final size:21
Alignment explanation
Indices: 151677239--151677327 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
151677229 CTCACAAAGA
* *
151677239 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
151677259 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
151677280 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
151677301 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
151677325 AAA
1 AAA
151677328 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:151677320 original size:24 final size:21
Alignment explanation
Indices: 151677239--151677307 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
151677229 CTCACAAAGA
* * *
151677239 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
151677259 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
151677280 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
151677301 AAAAAGA
1 AAAAAGA
151677308 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:151681493 original size:14 final size:14
Alignment explanation
Indices: 151681474--151681502 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
151681464 TACAATATAT
151681474 ATAAGAATTATACG
1 ATAAGAATTATACG
151681488 ATAAGAATTATACG
1 ATAAGAATTATACG
151681502 A
1 A
151681503 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:151684295 original size:13 final size:15
Alignment explanation
Indices: 151684270--151684309 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
151684260 TATTTTATTA
151684270 AATAAATATTAAATT
1 AATAAATATTAAATT
151684285 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
151684298 AATAAATATTAA
1 AATAAATATTAA
151684310 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:151700281 original size:40 final size:40
Alignment explanation
Indices: 151700215--151700365 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
151700205 AAATTGAATG
* * *
151700215 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
151700254 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
151700294 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
151700334 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
151700366 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:151708285 original size:40 final size:40
Alignment explanation
Indices: 151708219--151708385 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
151708209 AAATTGAATG
* * *
151708219 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
151708258 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
151708298 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
151708338 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
151708378 ATATCCGG
1 ATATCCGG
151708386 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:151717322 original size:47 final size:44
Alignment explanation
Indices: 151717203--151717329 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 44
151717193 AGGATATTTG
** *
151717203 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACAGATGAAT
* *
151717246 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACT
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGACAGATG-AA-T
151717295 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
151717330 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 1 0.01
44 2 0.03
46 29 0.41
47 34 0.48
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (44 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGACAGATGAAT
Found at i:151730503 original size:25 final size:25
Alignment explanation
Indices: 151730474--151730521 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
151730464 TTATAATATG
* * *
151730474 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
151730499 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
151730522 GTTTATGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:151730624 original size:20 final size:20
Alignment explanation
Indices: 151730558--151730624 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
151730548 ATTTTGATAA
*
151730558 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
151730578 GCATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
151730598 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
151730618 ACGTGAT
1 ACATGAT
151730625 GTAATCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:151730795 original size:24 final size:23
Alignment explanation
Indices: 151730675--151730793 Score: 184
Period size: 23 Copynumber: 5.1 Consensus size: 23
151730665 AGGAAGTGGA
*
151730675 AAAGGGCTTATGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
151730698 GAAGGGCTTGTGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151730721 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
151730744 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
151730767 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
151730791 AAA
1 AAA
151730794 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
23 65 0.75
24 22 0.25
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:151731043 original size:31 final size:31
Alignment explanation
Indices: 151731008--151731071 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
151730998 CATTTACAGT
*
151731008 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
151731039 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
151731070 AA
1 AA
151731072 TACGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:151735890 original size:33 final size:30
Alignment explanation
Indices: 151735824--151735890 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 30
151735814 ATAAGCTATA
* * *
151735824 TATTATGTATAATAAAATAAAATAAATATG
1 TATTATATATAATAAAATAAAAAAAATAGG
151735854 TATTATATAATAATTAAAATAATAAAAAATAGG
1 TATTATAT-ATAA-TAAAATAA-AAAAAATAGG
151735887 TATT
1 TATT
151735891 GAATGAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 7 0.23
31 4 0.13
32 8 0.26
33 12 0.39
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (30 bp):
TATTATATATAATAAAATAAAAAAAATAGG
Found at i:151741811 original size:80 final size:80
Alignment explanation
Indices: 151741727--151741875 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
151741717 TATGGTAACC
* * * *
151741727 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
151741791 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
151741807 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
151741872 CCGG
66 CCGG
151741876 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:151741817 original size:40 final size:38
Alignment explanation
Indices: 151741768--151741875 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
151741758 ATCACGATTT
*
151741768 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
151741808 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
151741848 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
151741876 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:151750829 original size:40 final size:39
Alignment explanation
Indices: 151750784--151750893 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
151750774 CTGGAAATTA
* * *
151750784 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--ATAC
*
151750825 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTATAC
*
151750863 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
151750894 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 29 0.48
40 30 0.49
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTATAC
Found at i:151750878 original size:39 final size:37
Alignment explanation
Indices: 151750784--151750893 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 37
151750774 CTGGAAATTA
* *
151750784 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
151750822 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T--ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
151750863 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
151750894 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 30 0.48
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:151758831 original size:40 final size:39
Alignment explanation
Indices: 151758786--151758895 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 39
151758776 CTGGAAATTA
* * *
151758786 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--ATAC
*
151758827 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTATAC
*
151758865 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
151758896 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.03
39 29 0.48
40 30 0.49
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTATAC
Found at i:151758880 original size:39 final size:37
Alignment explanation
Indices: 151758786--151758895 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 37
151758776 CTGGAAATTA
* *
151758786 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
151758824 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTATTC
1 T--ATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
151758865 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
151758896 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
38 1 0.02
39 30 0.48
40 30 0.48
41 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Done.