Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 490 of 770
Found at i:151764106 original size:38 final size:38
Alignment explanation
Indices: 151764059--151764351 Score: 352
Period size: 38 Copynumber: 7.7 Consensus size: 38
151764049 GGCTTAAAGA
151764059 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* ** * *
151764097 CCCGTAGGCTTCGTGCTACTAATATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
*
151764135 CTCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * * * *
151764173 CCTGCAGGCTTCGTACTGCTAATATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * *
151764211 CTCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * * **
151764249 CTCGCAAGCTTCGTGCTGGTATTATGTCTAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * *
151764287 CTCACAGGCTTCATGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * * *
151764325 CCCGCAGGCCTAGTACTAGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
151764352 TCAGACCTTG
Statistics
Matches: 213, Mismatches: 42, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 213 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:151764152 original size:76 final size:76
Alignment explanation
Indices: 151764061--151764333 Score: 420
Period size: 76 Copynumber: 3.6 Consensus size: 76
151764051 CTTAAAGACC
* *
151764061 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTACTAATATATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGCTAATATATCC
151764126 AGGTTAAATCT
66 AGGTTAAATCT
* *
151764137 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCTGCAGGCTTCGTACTGCTAATATATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGCTAATATATCC
151764202 AGGTTAAATCT
66 AGGTTAAATCT
* * * * * * * *
151764213 CGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCTCGCAAGCTTCGTGCTGGTATTATGTCT
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGCTAATATATCC
151764278 AGGTTAAATCT
66 AGGTTAAATCT
* *
151764289 CACAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
151764334 CTAGTACTAG
Statistics
Matches: 177, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 177 1.00
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (76 bp):
CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGCTAATATATCC
AGGTTAAATCT
Found at i:151764412 original size:45 final size:44
Alignment explanation
Indices: 151764357--151764478 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 44
151764347 TATATTCAGA
* * *
151764357 CCTT-GAGCCTAGCAGGCTATTATGCCGGTGAGAT-ACTATTCGGG
1 CCTTCGAGCCTAGCAGGCTATAATGCCGGTGACATGA-TA-TCGAG
*
151764401 CCTTCGAGCCTAGCAGGCTATAATGCCAGTGACATGATATCGAG
1 CCTTCGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCGAG
* *
151764445 CC-TCCAGCCTAGCAGGCGA-AATGCCGGTGA-ATGA
1 CCTTCGAGCCTAGCAGGCTATAATGCCGGTGACATGA
151764479 ATAAAAGTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
41 4 0.06
42 10 0.14
43 15 0.22
44 10 0.14
45 29 0.42
46 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (44 bp):
CCTTCGAGCCTAGCAGGCTATAATGCCGGTGACATGATATCGAG
Found at i:151765912 original size:2 final size:2
Alignment explanation
Indices: 151765905--151765937 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
151765895 GAGACTAGTC
151765905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
151765938 CATGTCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:151767415 original size:12 final size:12
Alignment explanation
Indices: 151767398--151767431 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
151767388 TTGATGTATT
151767398 ACTTACATATAA
1 ACTTACATATAA
151767410 ACTTACATATAA
1 ACTTACATATAA
151767422 ACTTACATAT
1 ACTTACATAT
151767432 CATTTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (12 bp):
ACTTACATATAA
Found at i:151767966 original size:30 final size:30
Alignment explanation
Indices: 151767932--151767992 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
151767922 TCCTTAACTC
151767932 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
151767962 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
151767992 A
1 A
151767993 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:151775005 original size:40 final size:40
Alignment explanation
Indices: 151774961--151775267 Score: 235
Period size: 40 Copynumber: 7.7 Consensus size: 40
151774951 ATAACCACAA
* * *
151774961 GCACAATTGCCTTCAGGTCTTAACCCGGATTTGGTATCTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTATCTT
* ** * *
151775001 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTATCTT
* *
151775041 GCACGAATGCCTTCGGGTCTTAGCCCGAATTTGGTATCTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTATCTT
* * ** * *
151775081 GCACAAATGCCTTCGGGTCTTAG-CCAGATATGACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTATCTT
* * ** *
151775120 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCA-CTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGT-ATCTT
* * * ** *
151775160 GCATAAATGCCTTCGGGACTTAGCCCGGATATATTCA-CTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGT-ATCTT
* * * * ** *
151775200 CCATAAATGCCTTCGGGACTTAGCCCGGATATATTCA-CTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGT-ATCTT
* *
151775240 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
151775268 GTATCATTCA
Statistics
Matches: 231, Mismatches: 34, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
39 31 0.13
40 199 0.86
41 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTTGGTATCTT
Found at i:151775143 original size:79 final size:80
Alignment explanation
Indices: 151774968--151775191 Score: 317
Period size: 79 Copynumber: 2.8 Consensus size: 80
151774958 CAAGCACAAT
* * * *
151774968 TGCCTTCAGGTCTTAACCCGGATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGAATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCCCAGATAT
151775033 GACAACTCGCACGAA
66 GACAACTCGCACGAA
151775048 TGCCTTCGGGTCTTAGCCCGAATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAG-CCAGATAT
1 TGCCTTCGGGTCTTAGCCCGAATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCCCAGATAT
151775112 GACAACTCGCACGAA
66 GACAACTCGCACGAA
* * ** * * * *
151775127 TGCCTTCGGGTCTTAGCCCGGATATAATCA-CTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 TGCCTTCGGGTCTTAGCCCGAATTTGGT-ATCTTGCACAAATGCCTTCGGGTCTTAGCCCAGATA
151775191 T
65 T
151775192 ATTCACTACC
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 69 0.53
80 61 0.47
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGAATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAGCCCAGATAT
GACAACTCGCACGAA
Found at i:151775222 original size:119 final size:119
Alignment explanation
Indices: 151775001--151775267 Score: 299
Period size: 119 Copynumber: 2.2 Consensus size: 119
151774991 TTGGTATCTT
* * * *
151775001 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCC
* * ** * *
151775066 CGAATTTGGTATCTTGCACAAATGCCTTCGGGTCTTAG-CCAGATATGA-CAACTC
66 CGAATATAGTATCTACCACAAATGCCTTCGGGACTTAGCCCAGATAT-ATC-ACTA
* *
151775120 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
151775184 CCGGATATATTCA-CTACCATAAATGCCTTCGGGACTTAGCCCGGATATATTCACTA
65 CCGAATATAGT-ATCTACCACAAATGCCTTCGGGACTTAGCCCAGATATA-TCACTA
* *
151775240 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
151775268 GTATCATTCA
Statistics
Matches: 124, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
119 86 0.69
120 37 0.30
121 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCC
CGAATATAGTATCTACCACAAATGCCTTCGGGACTTAGCCCAGATATATCACTA
Found at i:151775225 original size:80 final size:81
Alignment explanation
Indices: 151775125--151775277 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 81
151775115 AACTCGCACG
*
151775125 AATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
151775190 AT-ATTCACTACCATA
66 ATCATTCACTACCATA
* *
151775205 AATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGGT
1 AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
151775270 ATCATTCA
66 ATCATTCA
151775278 AATGCTCATG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
80 64 0.93
81 5 0.07
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
ATCATTCACTACCATA
Found at i:151783972 original size:40 final size:40
Alignment explanation
Indices: 151783923--151784130 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
151783913 TCTTCGGAAT
* *
151783923 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
151783962 TTAACCCGGAT-TTGGTATCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * * *
151784002 TTAGCCCGGATATGACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
151784042 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
** * *
151784082 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
151784122 TTAGCCCGG
1 TTAGCCCGG
151784131 GTATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 5 0.03
40 136 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:151793969 original size:40 final size:39
Alignment explanation
Indices: 151793804--151793987 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
151793794 AAATTGAATG
* * *
151793804 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
151793844 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
151793884 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
151793924 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
151793963 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
151793988 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:151794012 original size:80 final size:81
Alignment explanation
Indices: 151793844--151794032 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
151793834 GCTGGAAATT
* * * *
151793844 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
151793909 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
151793925 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
151793988 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
151794004 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
151794033 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:151799787 original size:16 final size:16
Alignment explanation
Indices: 151799762--151799794 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
151799752 ACGGTATTCT
*
151799762 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
151799778 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
151799794 A
1 A
151799795 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:151800292 original size:15 final size:15
Alignment explanation
Indices: 151800259--151800292 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
151800249 AGTTATGTCT
*
151800259 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
151800274 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
151800289 ATGT
1 ATGT
151800293 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:151801314 original size:19 final size:19
Alignment explanation
Indices: 151801292--151801331 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
151801282 TTAAACTTTT
* *
151801292 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
151801311 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
151801330 AT
1 AT
151801332 AAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:151803037 original size:14 final size:14
Alignment explanation
Indices: 151803018--151803046 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
151803008 CTTTTTACTT
151803018 TGTTATATAGATTA
1 TGTTATATAGATTA
151803032 TGTTATATAGATTA
1 TGTTATATAGATTA
151803046 T
1 T
151803047 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:151803195 original size:21 final size:21
Alignment explanation
Indices: 151803171--151803210 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
151803161 TTTATCAGTA
*
151803171 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
151803192 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
151803211 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:151803810 original size:11 final size:11
Alignment explanation
Indices: 151803794--151803818 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
151803784 CTTTATATTT
151803794 ATATACAATAA
1 ATATACAATAA
151803805 ATATACAATAA
1 ATATACAATAA
151803816 ATA
1 ATA
151803819 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:151804513 original size:14 final size:15
Alignment explanation
Indices: 151804482--151804521 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
151804472 TATCTTTATC
151804482 TTATTTATATTCTATT
1 TTATTTAT-TTCTATT
151804498 TTATTTATTTCT-TT
1 TTATTTATTTCTATT
*
151804512 TTTTTTATTT
1 TTATTTATTT
151804522 ATCCATCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (15 bp):
TTATTTATTTCTATT
Found at i:151809206 original size:23 final size:23
Alignment explanation
Indices: 151809176--151809221 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
151809166 TATATTTTGA
151809176 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
151809199 GTTCGTATATAACTAGTCAATAT
1 GTTCGTATATAACTAGTCAATAT
151809222 CTAATATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTCGTATATAACTAGTCAATAT
Found at i:151809781 original size:14 final size:14
Alignment explanation
Indices: 151809762--151809789 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
151809752 TCAAGATAAA
151809762 GATAATATTGATCG
1 GATAATATTGATCG
151809776 GATAATATTGATCG
1 GATAATATTGATCG
151809790 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:151810990 original size:29 final size:29
Alignment explanation
Indices: 151810948--151811005 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
151810938 TATTAACCGA
151810948 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
151810977 TTCCATAGATCTATGTAGTTCCAAAAAAG
1 TTCCATAGATCTATGTAGTTCCAAAAAAG
151811006 AATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (29 bp):
TTCCATAGATCTATGTAGTTCCAAAAAAG
Found at i:151827077 original size:15 final size:15
Alignment explanation
Indices: 151827057--151827099 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
151827047 TATTAGAAAT
151827057 AAATAGATATTATAA
1 AAATAGATATTATAA
151827072 AAATAGA-A--AT--
1 AAATAGATATTATAA
151827082 AAATAGATATTATAA
1 AAATAGATATTATAA
151827097 AAA
1 AAA
151827100 GAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 7 0.30
11 1 0.04
12 2 0.09
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGATATTATAA
Found at i:151827078 original size:25 final size:25
Alignment explanation
Indices: 151827050--151827099 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
151827040 AAATATTTAT
151827050 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
151827075 TAGAAATAAATAGATATTATAAAAA
1 TAGAAATAAATAGATATTATAAAAA
151827100 GAAACTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (25 bp):
TAGAAATAAATAGATATTATAAAAA
Found at i:151832791 original size:31 final size:33
Alignment explanation
Indices: 151832728--151832801 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
151832718 AAAATGAAAA
* *
151832728 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
*
151832761 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
1 TAAATTATTAATTTATTCTAATTATACTTAAAT
151832792 TAAA-TATTAA
1 TAAATTATTAA
151832802 ATAATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 12 0.32
32 7 0.18
33 13 0.34
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (33 bp):
TAAATTATTAATTTATTCTAATTATACTTAAAT
Found at i:151832807 original size:10 final size:10
Alignment explanation
Indices: 151832794--151833013 Score: 97
Period size: 11 Copynumber: 21.4 Consensus size: 10
151832784 ACTTAAATTA
*
151832794 AATATTAAAT
1 AATAATAAAT
151832804 AATAATAAAT
1 AATAATAAAT
** *
151832814 TCTAAATATACT
1 AAT-AATA-AAT
151832826 AA-ATATAAAT
1 AATA-ATAAAT
151832836 AATAACTAAAT
1 AATAA-TAAAT
151832847 AATAACTAAAT
1 AATAA-TAAAT
151832858 AGA-AAT--A-
1 A-ATAATAAAT
151832865 AA-AATAAAT
1 AATAATAAAT
151832874 AATAACTAAAT
1 AATAA-TAAAT
151832885 AGA-AATAAAAT
1 A-ATAAT-AAAT
151832896 AATAACTAAAT
1 AATAA-TAAAT
151832907 AGA-AATAAA-
1 A-ATAATAAAT
*
151832916 AAT-ATATAT
1 AATAATAAAT
* *
151832925 AAAAATATAT
1 AATAATAAAT
151832935 -ATAAT-AAT
1 AATAATAAAT
151832943 AATATATAAA-
1 AATA-ATAAAT
*
151832953 AATAATATAT
1 AATAATAAAT
*
151832963 AAATTATAAAT
1 -AATAATAAAT
151832974 AGATAATATAAT
1 A-ATAATA-AAT
151832986 AATAGATAGAAT
1 AATA-ATA-AAT
151832998 AATAAAATAAAT
1 AAT--AATAAAT
151833010 AATA
1 AATA
151833014 TAGAAATATA
Statistics
Matches: 165, Mismatches: 16, Indels: 58
0.69 0.07 0.24
Matches are distributed among these distances:
6 4 0.02
7 1 0.01
8 9 0.05
9 16 0.10
10 39 0.24
11 67 0.41
12 25 0.15
13 3 0.02
14 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (10 bp):
AATAATAAAT
Found at i:151832927 original size:22 final size:24
Alignment explanation
Indices: 151832843--151832923 Score: 114
Period size: 22 Copynumber: 3.4 Consensus size: 24
151832833 AATAATAACT
151832843 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
151832866 AAATAAATAATAACTAAATAGAAAT-A
1 AAAT--AT-ATAACTAAATAGAAATAA
151832892 AAATA-ATAACTAAATAGAAATAA
1 AAATATATAACTAAATAGAAATAA
151832915 AAATATATA
1 AAATATATA
151832924 TAAAAATATA
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
22 16 0.31
23 10 0.19
24 4 0.08
25 1 0.02
26 5 0.10
27 16 0.31
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (24 bp):
AAATATATAACTAAATAGAAATAA
Found at i:151832932 original size:12 final size:13
Alignment explanation
Indices: 151832911--151832965 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
151832901 CTAAATAGAA
151832911 ATAAAAAT-ATAT
1 ATAAAAATAATAT
151832923 ATAAAAAT-ATAT
1 ATAAAAATAATAT
*
151832935 ATAATAATAATAT
1 ATAAAAATAATAT
151832948 ATAAAAATAATAT
1 ATAAAAATAATAT
151832961 ATAAA
1 ATAAA
151832966 TTATAAATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
12 19 0.47
13 21 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAAAAATAATAT
Found at i:151832946 original size:15 final size:15
Alignment explanation
Indices: 151832917--151833013 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
151832907 AGAAATAAAA
*
151832917 ATATAT-ATAAAAAT
1 ATATATAATAATAAT
151832931 ATATATAATAATAAT
1 ATATATAATAATAAT
151832946 ATATA-AA-AATAAT
1 ATATATAATAATAAT
*
151832959 ATATA-AATTATAA-
1 ATATATAATAATAAT
*
151832972 ATAGATAATATAATAAT
1 ATATAT-A-ATAATAAT
* * *
151832989 AGATAGAATAATAAA
1 ATATATAATAATAAT
*
151833004 ATAAATAATA
1 ATATATAATA
151833014 TAGAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
13 17 0.26
14 12 0.18
15 27 0.41
16 7 0.11
17 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAATAATAAT
Found at i:151832956 original size:43 final size:42
Alignment explanation
Indices: 151832860--151833023 Score: 118
Period size: 43 Copynumber: 3.7 Consensus size: 42
151832850 AACTAAATAG
* * * * *
151832860 AAATAAAAATAAATAATAA-CTAAATAGAAATAAAATAATAACT
1 AAATAAAAATAAA-AATAATATAAAAATATATATAATAATAA-T
*
151832903 AAATAGAAATAAAAATATATATAAAAATATATATAATAATAAT
1 AAATAAAAATAAAAATA-ATATAAAAATATATATAATAATAAT
* *
151832946 ATATAAAAATAATATATAAATTATAAATAGATA-ATATAATAATAGAT
1 AAATAAAAATAA-AAAT-AA-TATAAA-A-ATATATATAATAATA-AT
* *
151832993 AGAATAATAAA-ATAAATAATATAGAAATATA
1 A-AATAA-AAATAAAAATAATATAAAAATATA
151833024 GATTTATAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
42 4 0.04
43 27 0.28
44 23 0.24
45 12 0.12
46 14 0.14
47 9 0.09
48 5 0.05
49 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (42 bp):
AAATAAAAATAAAAATAATATAAAAATATATATAATAATAAT
Found at i:151832956 original size:49 final size:50
Alignment explanation
Indices: 151832819--151833015 Score: 139
Period size: 49 Copynumber: 4.0 Consensus size: 50
151832809 TAAATTCTAA
* *
151832819 ATATACTAAATATAAATAATAACTAA-ATAATAACTAAATAGAAATAAAAATA-
1 ATATAATAAATATATATAATAA-TAATAT-ATAAC-AAATA-AAATAAAAATAT
* * *
151832871 A-ATAATAACTAAATAGAAATAA-AATA-ATAACTAAATAGAAATAAAAATAT
1 ATATAATAAATATATA-TAATAATAATATATAAC-AAATA-AAATAAAAATAT
* *
151832921 ATATAA-AAATATATATAATAATAATATATAA-AAATAATATATAAAT-T
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
* * * *
151832968 ATA-AATAGATA-ATATAATAAT-AGATAGAA-TAATAAAATAAATAATAT
1 ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAA-AATAT
151833015 A
1 A
151833016 GAAATATAGA
Statistics
Matches: 120, Mismatches: 16, Indels: 23
0.75 0.10 0.14
Matches are distributed among these distances:
45 15 0.12
46 15 0.12
47 10 0.08
48 8 0.07
49 33 0.28
50 14 0.12
51 19 0.16
52 6 0.05
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (50 bp):
ATATAATAAATATATATAATAATAATATATAACAAATAAAATAAAAATAT
Found at i:151832984 original size:20 final size:20
Alignment explanation
Indices: 151832959--151833062 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
151832949 TAAAAATAAT
151832959 ATATAAATTATAAATAGATA
1 ATATAAATTATAAATAGATA
* *
151832979 ATAT-AATAATAGATAGAATA
1 ATATAAATTATAAATAG-ATA
*
151832999 ATA-AAATAAATAATATAGA-A
1 ATATAAAT-TATAA-ATAGATA
* *
151833019 ATATAGATTTATAAATCGA-A
1 ATATA-AATTATAAATAGATA
*
151833039 ATAT--ATTA-ATATA-ATA
1 ATATAAATTATAAATAGATA
151833055 ATATAAAT
1 ATATAAAT
151833063 ATTATTAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 20
0.69 0.09 0.21
Matches are distributed among these distances:
15 1 0.02
16 8 0.12
17 3 0.05
18 2 0.03
19 10 0.15
20 26 0.39
21 10 0.15
22 6 0.09
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (20 bp):
ATATAAATTATAAATAGATA
Found at i:151833020 original size:15 final size:14
Alignment explanation
Indices: 151832861--151833021 Score: 55
Period size: 13 Copynumber: 11.8 Consensus size: 14
151832851 ACTAAATAGA
151832861 AATA-AAAATAAAT
1 AATATAAAATAAAT
*
151832874 AATAACTAAATAGAAAT
1 AAT-A-TAAA-ATAAAT
* *
151832891 AA-A-ATAATAACT
1 AATATAAAATAAAT
151832903 AA-ATAGAAATAAA-
1 AATATA-AAATAAAT
151832916 AATATATATAA-AAAT
1 AATATA-A-AATAAAT
*
151832931 -ATATATAAT-AAT
1 AATATAAAATAAAT
*
151832943 AATATATAA-AAAT
1 AATATAAAATAAAT
151832956 AATAT---ATAAAT
1 AATATAAAATAAAT
*
151832967 --TAT-AAATAGAT
1 AATATAAAATAAAT
*
151832978 AATATAATAATAGATAG
1 AATATAA-AATA-A-AT
151832995 AATAATAAAATAAAT
1 AAT-ATAAAATAAAT
151833010 AATATAGAAATA
1 AATATA-AAATA
151833022 TAGATTTATA
Statistics
Matches: 113, Mismatches: 12, Indels: 44
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.03
10 1 0.01
11 9 0.08
12 12 0.11
13 27 0.24
14 22 0.19
15 16 0.14
16 4 0.04
17 15 0.13
18 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (14 bp):
AATATAAAATAAAT
Found at i:151833068 original size:23 final size:23
Alignment explanation
Indices: 151833037--151833120 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
151833027 TTATAAATCG
151833037 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
151833059 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
151833085 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
151833107 AAATTAATATTAAT
1 AAA-TATTATTAAT
151833121 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:151833128 original size:26 final size:26
Alignment explanation
Indices: 151833041--151833129 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
151833031 AAATCGAAAT
151833041 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
151833064 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
151833087 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
151833113 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
151833130 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:151838787 original size:15 final size:15
Alignment explanation
Indices: 151838769--151838799 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
151838759 ATCTCTCATC
151838769 TATCTATCTATTTTT
1 TATCTATCTATTTTT
151838784 TATCTATCTATTTTT
1 TATCTATCTATTTTT
151838799 T
1 T
151838800 CTTTAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TATCTATCTATTTTT
Found at i:151839501 original size:16 final size:17
Alignment explanation
Indices: 151839474--151839507 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
151839464 AAATGGATTT
151839474 AATAGAAATTAAATAGA
1 AATAGAAATTAAATAGA
151839491 AATAG-AATTAAATAGA
1 AATAGAAATTAAATAGA
151839507 A
1 A
151839508 TTCTCTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AATAGAAATTAAATAGA
Found at i:151840436 original size:15 final size:15
Alignment explanation
Indices: 151840407--151840468 Score: 54
Period size: 16 Copynumber: 4.0 Consensus size: 15
151840397 GTAGAAAGCC
* *
151840407 TATTTTTTTTTCTAG
1 TATTTTATTTACTAG
151840422 TATTTTATTTACTAG
1 TATTTTATTTACTAG
**
151840437 CGTGTTTATTTACTAGCG
1 TAT-TTTATTTACTA--G
151840455 TA-TTTATTTACTAG
1 TATTTTATTTACTAG
151840469 CGTATTTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
14 1 0.03
15 14 0.37
16 22 0.58
18 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.58
Consensus pattern (15 bp):
TATTTTATTTACTAG
Found at i:151840446 original size:16 final size:16
Alignment explanation
Indices: 151840425--151840475 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
151840415 TTTCTAGTAT
*
151840425 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
151840441 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
151840457 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
151840473 TTT
1 TTT
151840476 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:151841824 original size:13 final size:14
Alignment explanation
Indices: 151841791--151841824 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
151841781 GCCCGGAGGC
*
151841791 TAAAGAAAAAGTGA
1 TAAAAAAAAAGTGA
151841805 TAAAAAAAAAGTGA
1 TAAAAAAAAAGTGA
151841819 TGAAAA
1 T-AAAA
151841825 GTTTTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TAAAAAAAAAGTGA
Found at i:151843109 original size:9 final size:9
Alignment explanation
Indices: 151843095--151843183 Score: 57
Period size: 9 Copynumber: 10.3 Consensus size: 9
151843085 AGAAATAAAT
151843095 ATATATATA
1 ATATATATA
151843104 ATATATA-A
1 ATATATATA
*
151843112 AAATAATATTA
1 ATAT-ATA-TA
151843123 ATATATA-A
1 ATATATATA
151843131 ATATA-A-A
1 ATATATATA
151843138 A-ATATATA
1 ATATATATA
* *
151843146 AAATATTTA
1 ATATATATA
151843155 GATATA-A-A
1 -ATATATATA
* *
151843163 ATATTTAGA
1 ATATATATA
151843172 ATATATATA
1 ATATATATA
151843181 ATA
1 ATA
151843184 AAATAGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
6 3 0.05
7 8 0.13
8 14 0.22
9 27 0.43
10 7 0.11
11 4 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
ATATATATA
Found at i:151843124 original size:19 final size:19
Alignment explanation
Indices: 151843091--151843148 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
151843081 AAATAGAAAT
151843091 AAATATATATATAATATATAA
1 AAATA-ATAT-TAATATATAA
151843112 AAATAATATTAATATATAA
1 AAATAATATTAATATATAA
*
151843131 ATATAA-A--AATATATAA
1 AAATAATATTAATATATAA
151843147 AA
1 AA
151843149 TATTTAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 10 0.29
18 1 0.03
19 15 0.43
20 4 0.11
21 5 0.14
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAATATTAATATATAA
Found at i:151843135 original size:34 final size:35
Alignment explanation
Indices: 151843064--151843205 Score: 109
Period size: 34 Copynumber: 4.1 Consensus size: 35
151843054 TTTTGTATTG
* * * *
151843064 TATATAATGTATACAAAA-A-ATAGAAATAAATATA
1 TATATAATATATA-AAAATAGATATAAATATATAAA
*
151843098 TATATAATATATAAAAATA-ATATTAATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
* *
151843132 TATAAAAATATATAAAATATTTAGATATAAAATATTTAGAA
1 TAT-ATAATATATAAAA-A--TAGATAT-AAATATATA-AA
151843173 TATAT-ATA-AT-AAAATAGATAT-AATATATAAA
1 TATATAATATATAAAAATAGATATAAATATATAAA
151843204 TA
1 TA
151843206 AATTGAATAT
Statistics
Matches: 90, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
31 4 0.04
32 7 0.08
33 4 0.04
34 34 0.38
35 12 0.13
36 2 0.02
37 3 0.03
38 4 0.04
39 7 0.08
40 8 0.09
41 5 0.06
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.35
Consensus pattern (35 bp):
TATATAATATATAAAAATAGATATAAATATATAAA
Found at i:151843150 original size:25 final size:24
Alignment explanation
Indices: 151843087--151843205 Score: 109
Period size: 24 Copynumber: 4.9 Consensus size: 24
151843077 CAAAAAATAG
*
151843087 AAATAAATAT-ATATATAATATATA
1 AAATATATATAATATATAA-ATATA
151843111 AAA-ATAATATTAATATATAAATATAA
1 AAATAT-ATA-TAATATATAAATAT-A
* * *
151843137 AAATATATAAAATATTTAGATATA
1 AAATATATATAATATATAAATATA
* * *
151843161 AAATATTTAGAATATATATA-ATA
1 AAATATATATAATATATAAATATA
*
151843184 AAATAGATATAATATATAAATA
1 AAATATATATAATATATAAATA
151843206 AATTGAATAT
Statistics
Matches: 77, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
23 20 0.26
24 24 0.31
25 16 0.21
26 15 0.19
27 2 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
AAATATATATAATATATAAATATA
Found at i:151843161 original size:15 final size:16
Alignment explanation
Indices: 151843141--151843176 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
151843131 ATATAAAAAT
151843141 ATATAAAATATTTAG-
1 ATATAAAATATTTAGA
151843156 ATATAAAATATTTAGA
1 ATATAAAATATTTAGA
151843172 ATATA
1 ATATA
151843177 TATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATAAAATATTTAGA
Found at i:151843215 original size:22 final size:22
Alignment explanation
Indices: 151843087--151843226 Score: 85
Period size: 23 Copynumber: 6.2 Consensus size: 22
151843077 CAAAAAATAG
*
151843087 AAATAAATATATATATAATATAT
1 AAATAAA-ATAGATATAATATAT
151843110 --A-AAAATA-ATATTAATATAT
1 AAATAAAATAGATA-TAATATAT
* * *
151843129 AAATATAAAAATATATAAAATATTT
1 -AA-AT-AAAATAGATATAATATAT
** *
151843154 AGATATAAAATATTTAGAATATAT
1 A-A-ATAAAATAGATATAATATAT
151843178 ATAATAAAATAGATATAATATAT
1 A-AATAAAATAGATATAATATAT
*
151843201 AAAT-AAATTGAATATAATAT-T
1 AAATAAAATAG-ATATAATATAT
151843222 AAATA
1 AAATA
151843227 GATAAATAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
18 3 0.03
19 11 0.11
20 3 0.03
21 11 0.11
22 12 0.12
23 19 0.20
24 18 0.19
25 16 0.17
26 3 0.03
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
AAATAAAATAGATATAATATAT
Found at i:151843632 original size:13 final size:13
Alignment explanation
Indices: 151843614--151843640 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
151843604 GTTATTCATA
151843614 ATTAATATGAATT
1 ATTAATATGAATT
151843627 ATTAATATGAATT
1 ATTAATATGAATT
151843640 A
1 A
151843641 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:151843837 original size:8 final size:8
Alignment explanation
Indices: 151843805--151843853 Score: 55
Period size: 8 Copynumber: 5.9 Consensus size: 8
151843795 TAAAATTTTA
151843805 TATATATT
1 TATATATT
*
151843813 TATTATTTATC
1 TA-TA--TATT
151843824 TATATATT
1 TATATATT
151843832 TATATATT
1 TATATATT
151843840 TATATATT
1 TATATATT
151843848 TA-ATAT
1 TATATAT
151843854 CTTTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
7 4 0.11
8 23 0.64
9 2 0.06
10 2 0.06
11 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATATT
Found at i:151843944 original size:17 final size:17
Alignment explanation
Indices: 151843922--151843960 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
151843912 CTGACTCCAT
*
151843922 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
151843939 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
151843956 TTTTA
1 TTTTA
151843961 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:151844126 original size:15 final size:17
Alignment explanation
Indices: 151844096--151844127 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
151844086 GTCAAAATCT
151844096 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
151844113 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
151844128 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:151844773 original size:18 final size:18
Alignment explanation
Indices: 151844746--151844788 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
151844736 CGCATAAAAA
* *
151844746 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
151844764 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
151844782 GAAAGAA
1 GAAAGAA
151844789 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:151853575 original size:29 final size:29
Alignment explanation
Indices: 151853541--151853615 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
151853531 TACTCGATTT
*
151853541 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
151853570 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
151853599 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
151853616 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:151853632 original size:29 final size:29
Alignment explanation
Indices: 151853599--151853672 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
151853589 CCTTCGAGCT
151853599 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
151853628 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
151853657 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
151853673 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:151858532 original size:13 final size:13
Alignment explanation
Indices: 151858514--151858538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
151858504 AAGAAATCGA
151858514 ACACGGGCGTGTC
1 ACACGGGCGTGTC
151858527 ACACGGGCGTGT
1 ACACGGGCGTGT
151858539 TCCTGTCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:151860648 original size:130 final size:130
Alignment explanation
Indices: 151860277--151860648 Score: 353
Period size: 131 Copynumber: 2.8 Consensus size: 130
151860267 GTGAAGTCCC
* * * * *
151860277 AAAGAGATATTCGATTATTTTGAACAAACGAGAGATTGCAACCCAGTACGATAGGGCACT-ATTC
1 AAAGAAATATTCGATTGTTTTGAACAAA-GGGAAATCGCAACCCAGTACGATAGGGCA-TGATT-
* * * *
151860341 CCCGAATTGCCAAACATCGAACATTTCCTTTGTTTTAAA-GAGTTTTTAGAAAACGTGAGTAAAA
63 CCCGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGGA-TTTTTAGAAAACATGAATAAAA
151860405 TTCCG
127 -TCCG
* ** * * * * *
151860410 -AAGGAACCTTCGATTGTTTTGAACAAACGAAAATGCGCAACCCAGCACGATAGGGCACGATTCT
1 AAAGAAATATTCGATTGTTTTGAACAAAGGGAAAT-CGCAACCCAGTACGATAGGGCATGATTCC
* * * * * * *
151860474 CAAATCGCCAGACATCGAAGATCGCTTTCGTTTTGAGAGG-TTTTTA-ATAAACATGAATGAAAA
65 CGAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAAGGATTTTTAGA-AAACATGAAT-AAAA
151860537 -CCG
127 TCCG
* *
151860540 AAAGAAATATTTGATTGTTTTGAACAAATGGGAAATCACAA-CCAGTACGATAGGGCATGATTCC
1 AAAGAAATATTCGATTGTTTTGAACAAA-GGGAAATCGCAACCCAGTACGATAGGGCATGATTCC
* *
151860604 CGAATTGTCAAACATCGAACATTGCCTTCATTTTAAAGGATTTTT
65 CGAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGGATTTTT
151860649 TTTGAATACA
Statistics
Matches: 187, Mismatches: 43, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
129 4 0.02
130 55 0.29
131 71 0.38
132 56 0.30
133 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
AAAGAAATATTCGATTGTTTTGAACAAAGGGAAATCGCAACCCAGTACGATAGGGCATGATTCCC
GAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAGGATTTTTAGAAAACATGAATAAAATCCG
Found at i:151860783 original size:263 final size:263
Alignment explanation
Indices: 151860277--151860783 Score: 560
Period size: 263 Copynumber: 1.9 Consensus size: 263
151860267 GTGAAGTCCC
* * **
151860277 AAAGAGATATTCGATTATTTTGAACAAACGAGAGATTGCAACCCAGTACGATAGGGCACTATTCC
1 AAAGAAATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGTACGATAGGGCACTATTCC
* ** *
151860342 CCGAATTGCCAAACATCGAACATTTCCTTTGTTTTAAAGAGTTTTTAGAAAACGTGAGTAAAATT
66 CCGAATTGCCAAACATCGAACATTGCCTTCATTTTAAAGAGTTTTTAGAAAACATGAGTAAAATT
* * * *
151860407 CCGAAGGAACCTTCGATTGTTTTGAACAAACGAAAATGCGCAACCCAGCACGATAGGGCACGATT
131 CCGAAGGAACATTCGATTGATTTGAACAAACGAAAATGCGCAACCCAACACGATAGGACACGATT
* * * *
151860472 CTCAAATCGCCAGACATCGAAGATCGCTTTCGTTTTGAGAGGTTTTTAATAAACATGAATGAAAA
196 CTCAAATCGCCAAACATCGAACATCGCCTTCGTTTTAAGAGGTTTTTAATAAACATGAATGAAAA
151860537 CCG
261 CCG
* * * *
151860540 AAAGAAATATTTGATTGTTTTGAACAAATGGGAAATCACAA-CCAGTACGATAGGGCA-TGATT-
1 AAAGAAATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGTACGATAGGGCACT-ATTC
* * * * *
151860602 CCCGAATTGTCAAACATCGAACATTGCCTTCATTTTAAAGGATTTTTTTTGAATACATGAGTGAA
65 CCCGAATTGCCAAACATCGAACATTGCCTTCATTTTAAA-GA-GTTTTTAGAAAACATGAGTAAA
** * * * * * * *
151860667 ATTTTGGAGGGATATTTGATT-ATTTGAAGCAATCGAGAAAT-TGCAACCCAACACGTTAGGACA
128 ATTCCGAAGGAACATTCGATTGATTTGAA-CAAACGA-AAATGCGCAACCCAACACGATAGGACA
* * * *
151860730 CGATTCTACGAATTGCCAAATATCGCACATCGCCTTCG-TTTAAG-GGATTTTTAA
191 CGATTCT-CAAATCGCCAAACATCGAACATCGCCTTCGTTTTAAGAGG-TTTTTAA
151860784 AAGAATAGAA
Statistics
Matches: 199, Mismatches: 38, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
261 36 0.18
262 29 0.15
263 107 0.54
264 27 0.14
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (263 bp):
AAAGAAATATTCGATTATTTTGAACAAACGAGAAATCACAACCCAGTACGATAGGGCACTATTCC
CCGAATTGCCAAACATCGAACATTGCCTTCATTTTAAAGAGTTTTTAGAAAACATGAGTAAAATT
CCGAAGGAACATTCGATTGATTTGAACAAACGAAAATGCGCAACCCAACACGATAGGACACGATT
CTCAAATCGCCAAACATCGAACATCGCCTTCGTTTTAAGAGGTTTTTAATAAACATGAATGAAAA
CCG
Found at i:151863714 original size:44 final size:44
Alignment explanation
Indices: 151863661--151864140 Score: 582
Period size: 44 Copynumber: 10.9 Consensus size: 44
151863651 ATCTCTTATT
* *
151863661 TTCGATCTGCTCTCTACCAATATAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* ** *
151863705 TTTGATCTGCTCTCCACTAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* *
151863749 TTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* * *
151863793 TTCGATCTGCTCTCCGCCAATATAGAGATGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* * * * *
151863837 TTTGATCTTCCCTCTGTCAACACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
** * * * *
151863881 TTTTATCTGCCCTTTGACAATACAGACATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* * * * *
151863925 TTCGATCTACTCCCTGCCAATATAGAGACGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* *
151863969 TCCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* * * * * * **
151864013 CTCTATTTGTTCTCTGCCAATATAGAGACGCCAAATCTATTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* *
151864057 TTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
* * *
151864101 TTCAATCTGCTCTCTGTCAACACAGAGATGCCAAATCTGC
1 TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGC
151864141 AAGATTCGCC
Statistics
Matches: 370, Mismatches: 66, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 370 1.00
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATC
Found at i:151877299 original size:24 final size:24
Alignment explanation
Indices: 151877267--151877401 Score: 225
Period size: 24 Copynumber: 5.6 Consensus size: 24
151877257 TATCTCAAAT
151877267 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
151877291 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
151877315 CCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
151877339 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
151877363 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
151877387 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
151877402 ACATAATAAG
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 106 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:151877414 original size:48 final size:47
Alignment explanation
Indices: 151877267--151877419 Score: 216
Period size: 48 Copynumber: 3.2 Consensus size: 47
151877257 TATCTCAAAT
*
151877267 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTAT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTAA
151877314 GCCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 G-CACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA-A
* * * ** *
151877363 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTAA
151877411 GCACTATGT
1 GCACTATGT
151877420 CTGCCACATT
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 1 0.01
48 89 0.93
49 6 0.06
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (47 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTAA
Found at i:151877415 original size:72 final size:72
Alignment explanation
Indices: 151877267--151877419 Score: 211
Period size: 72 Copynumber: 2.1 Consensus size: 72
151877257 TATCTCAAAT
* **
151877267 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGCCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATGCCACTATGTGTGCGACA
* *
151877332 TACTATG
66 TAATATA
* *
151877339 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATAG-CTCTATGTGTGCGAA
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTAT-GCCACTATGTGTGCG-A
151877403 CATAATA-A
64 CATAATATA
151877411 GCACTATGT
1 GCACTATGT
151877420 CTGCCACATT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 66 0.92
73 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATGCCACTATGTGTGCGACA
TAATATA
Found at i:151879107 original size:131 final size:131
Alignment explanation
Indices: 151878773--151879107 Score: 315
Period size: 131 Copynumber: 2.5 Consensus size: 131
151878763 GGTGTTACAG
* * *
151878773 CAACCCAGTATGATAGGGCACT-ATTCCCCAAATTGCCAAACATCGAACATTTCCTTTGTTTTAA
1 CAACCCAGTACGATAGGGCA-TGATT-CCCAAATTGCCAAACATCGAACATTGCCTTCGTTTTAA
* * * * * *
151878837 A-GAGTTTTTAGAAAACGTGAGTGAAATTCCGAGGGAACCTTCGATTGTTTTAAGCAAACGAAAA
64 AGGA-TTTTTAGAAAACATGAATGAAATACCGAAGAAACATTCGATTGTTTTAAGCAAACGAAAA
*
151878901 TGCG
128 TGCA
* * * * * * * * * *
151878905 CAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAGACATCGAAGATCGCTTTCATTTTGAGA
1 CAACCCAGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACATTGCCTTCGTTTT-AAA
* * *
151878970 GG-TTTTTA-ATAAACATGAATGAAA-ACCGAAAGAAATATTCGATTGTTTTGAA-CAAATGGGA
65 GGATTTTTAGA-AAACATGAATGAAATACCG-AAGAAACATTCGATTGTTTT-AAGCAAA-CGAA
151879031 AAT-CA
126 AATGCA
* * *
151879036 CAACCCAGTACGATAGGGCATGATTCCCGAATTGTCAAACATCGAATATTGCCTTCGTTTTAAAG
1 CAACCCAGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAG
151879101 GATTTTT
66 GATTTTT
151879108 TTTGAATACA
Statistics
Matches: 160, Mismatches: 35, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
130 8 0.05
131 121 0.76
132 30 0.19
133 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
CAACCCAGTACGATAGGGCATGATTCCCAAATTGCCAAACATCGAACATTGCCTTCGTTTTAAAG
GATTTTTAGAAAACATGAATGAAATACCGAAGAAACATTCGATTGTTTTAAGCAAACGAAAATGC
A
Found at i:151881894 original size:22 final size:23
Alignment explanation
Indices: 151881864--151881910 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
151881854 TTATAATTTA
151881864 TTGGTTTTATGTTTATT-GTTTGT
1 TTGGTTTTAT-TTTATTGGTTTGT
*
151881887 TTGG-TTTATTTTTTTGGTTTGT
1 TTGGTTTTATTTTATTGGTTTGT
151881909 TT
1 TT
151881911 TGTGTTTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.06, C:0.00, G:0.21, T:0.72
Consensus pattern (23 bp):
TTGGTTTTATTTTATTGGTTTGT
Found at i:151889346 original size:2 final size:2
Alignment explanation
Indices: 151889339--151889379 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
151889329 TCGATCGGAG
*
151889339 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
151889380 GAGTACGCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:151889505 original size:29 final size:29
Alignment explanation
Indices: 151889473--151889544 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
151889463 TTCGAGCTCT
*
151889473 CACACCCAGTGCCGTATATTTCCAGCATG
1 CACACCCAGTGCCATATATTTCCAGCATG
**
151889502 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACCCAGTGCCATATATTTCCAGCATG
**
151889531 CACACTTAGTGCCA
1 CACACCCAGTGCCA
151889545 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CACACCCAGTGCCATATATTTCCAGCATG
Found at i:151891116 original size:14 final size:14
Alignment explanation
Indices: 151891099--151891128 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
151891089 AGGAGCATTC
151891099 GGCTAGGGTATAAA
1 GGCTAGGGTATAAA
151891113 GGCTAGGGTATAAA
1 GGCTAGGGTATAAA
151891127 GG
1 GG
151891129 GAGGGATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.40, T:0.20
Consensus pattern (14 bp):
GGCTAGGGTATAAA
Found at i:151891896 original size:29 final size:29
Alignment explanation
Indices: 151891864--151891945 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
151891854 TGACGAGATA
*
151891864 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
151891893 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
151891922 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
151891946 AAAAAAATAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:151897154 original size:46 final size:46
Alignment explanation
Indices: 151896990--151897163 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
151896980 ATTTGGGCAT
*
151896990 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
151897035 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
151897080 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
151897128 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
151897164 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 35 0.32
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:151902978 original size:48 final size:48
Alignment explanation
Indices: 151902920--151903093 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 48
151902910 GGGTTATGTA
* *
151902920 AGCTAATGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAG
1 AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAG
* * * * ** **
151902968 AGCTAGTGTAAGACCATATTTGGGACATGGTATCGACCTCGATATTTG
1 AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAG
* * *
151903016 AGCTAGTGTGAGACAATGTTTGGAACATGGCATCGATACCACTT-TATGAG
1 AGCTAGTGTAAGACCATGTTTGGAACATGGCATCG--A-CATTTATATGAG
* *
151903066 AGCTAGTGTAAGACCATGTCTGGGACAT
1 AGCTAGTGTAAGACCATGTTTGGAACAT
151903094 AACATCGATA
Statistics
Matches: 98, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
48 68 0.69
50 29 0.30
51 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
AGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAG
Found at i:151903101 original size:98 final size:96
Alignment explanation
Indices: 151902920--151903101 Score: 240
Period size: 98 Copynumber: 1.9 Consensus size: 96
151902910 GGGTTATGTA
* * *
151902920 AGCTAATGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCAT
1 AGCTAATGTAAGACAATGTTTGGAACATGGCATCGCCACTTATATGAGAGCTAGTGTAAGACCAT
* ***
151902985 ATTTGGGACATGGTATCGACCTCGATATTTG
66 ATCTGGGACATAACATCGACCTCGATATTTG
* *
151903016 AGCTAGTGTGAGACAATGTTTGGAACATGGCATCGATACCACTT-TATGAGAGCTAGTGTAAGAC
1 AGCTAATGTAAGACAATGTTTGGAACATGGCATCG---CCACTTATATGAGAGCTAGTGTAAGAC
*
151903080 CATGTCTGGGACATAACATCGA
63 CATATCTGGGACATAACATCGA
151903102 TAGCTTACCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
96 32 0.44
98 37 0.51
99 4 0.05
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (96 bp):
AGCTAATGTAAGACAATGTTTGGAACATGGCATCGCCACTTATATGAGAGCTAGTGTAAGACCAT
ATCTGGGACATAACATCGACCTCGATATTTG
Found at i:151904363 original size:21 final size:20
Alignment explanation
Indices: 151904334--151904372 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
151904324 GTTAAAAGGA
151904334 CACACGGGCGTGTCGCCCTCC
1 CACACGGGCGTGT-GCCCTCC
*
151904355 CACATGGGCGTGTGCCCT
1 CACACGGGCGTGTGCCCT
151904373 TGTTTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.41, G:0.31, T:0.18
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTCC
Found at i:151907623 original size:28 final size:27
Alignment explanation
Indices: 151907560--151907629 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
151907550 ATAGTGAGTC
151907560 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
151907587 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
151907615 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
151907630 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:151915395 original size:28 final size:27
Alignment explanation
Indices: 151915332--151915401 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
151915322 ATAGTGAGTC
151915332 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
151915359 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
151915387 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
151915402 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:151919225 original size:40 final size:40
Alignment explanation
Indices: 151918987--151919211 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
151918977 TCGAATGATG
* * *
151918987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
151919027 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151919067 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
151919106 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
151919146 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
151919187 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
151919212 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:151925193 original size:40 final size:40
Alignment explanation
Indices: 151925138--151925218 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
151925128 AGAGAACCAT
151925138 AGTAATTCCTTTCAAAAGAAGAAAGAATAATAATTGGATC
1 AGTAATTCCTTTCAAAAGAAGAAAGAATAATAATTGGATC
151925178 AGTAATTCCTTTCAAAAGAAGAAAGAATAATAATTGGATC
1 AGTAATTCCTTTCAAAAGAAGAAAGAATAATAATTGGATC
151925218 A
1 A
151925219 ATATACGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (40 bp):
AGTAATTCCTTTCAAAAGAAGAAAGAATAATAATTGGATC
Found at i:151926119 original size:26 final size:26
Alignment explanation
Indices: 151926079--151926188 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
151926069 TGATACAAAT
* *
151926079 TGATAATAGGCTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
151926105 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
151926131 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
151926157 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
151926183 TGATAA
1 TGATAA
151926189 GAATATCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:151928258 original size:137 final size:137
Alignment explanation
Indices: 151927972--151928246 Score: 532
Period size: 137 Copynumber: 2.0 Consensus size: 137
151927962 GAGTAGTCTC
151927972 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
151928037 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGTCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
151928102 ACTGTTA
131 ACTGTTA
151928109 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
151928174 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
151928239 ACTGTTA
131 ACTGTTA
151928246 C
1 C
151928247 TTGAATGGGC
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 136 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
ACTGTTA
Found at i:151938298 original size:23 final size:23
Alignment explanation
Indices: 151938271--151938345 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
151938261 CGAATGGCCA
151938271 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
151938294 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
151938318 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
151938341 ATGTG
1 ATGTG
151938346 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:151938304 original size:47 final size:47
Alignment explanation
Indices: 151938193--151938508 Score: 452
Period size: 47 Copynumber: 6.6 Consensus size: 47
151938183 CCCGTATATA
***
151938193 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C-----ATGCG
*
151938246 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
151938293 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
*
151938340 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* *
151938387 TATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACATGCA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * **
151938434 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAT
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
151938481 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
151938509 CGAAACGTGT
Statistics
Matches: 246, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
47 205 0.83
52 1 0.00
53 40 0.16
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:151938541 original size:46 final size:46
Alignment explanation
Indices: 151938482--151938618 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
151938472 GAACATGATT
151938482 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
151938528 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
151938574 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATG
151938619 TGTATATATA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:151938911 original size:37 final size:37
Alignment explanation
Indices: 151938766--151938910 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
151938756 GGAAATATAT
151938766 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
151938803 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
151938840 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
151938877 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
151938911 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:151941419 original size:27 final size:28
Alignment explanation
Indices: 151941362--151941431 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
151941352 AAATTTGTAC
**
151941362 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
151941390 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
151941417 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
151941432 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:151941440 original size:27 final size:27
Alignment explanation
Indices: 151941362--151941443 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
151941352 AAATTTGTAC
* *
151941362 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
151941390 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
151941417 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
151941444 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:151947772 original size:12 final size:12
Alignment explanation
Indices: 151947755--151947783 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
151947745 ATTAAACTAC
151947755 ATCGCCCGATTT
1 ATCGCCCGATTT
151947767 ATCGCCCGATTT
1 ATCGCCCGATTT
151947779 ATCGC
1 ATCGC
151947784 TCAACTTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (12 bp):
ATCGCCCGATTT
Found at i:151951173 original size:68 final size:70
Alignment explanation
Indices: 151951000--151951173 Score: 235
Period size: 71 Copynumber: 2.5 Consensus size: 70
151950990 TTTTCAAGGG
* * * *
151951000 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151951065 TTTTCA
66 TTTT-A
* ** * *
151951071 AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151951136 -TTT-
66 TTTTA
*
151951139 AAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
151951174 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
68 33 0.36
70 3 0.03
71 56 0.61
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (70 bp):
AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:151951298 original size:72 final size:70
Alignment explanation
Indices: 151951173--151951337 Score: 224
Period size: 72 Copynumber: 2.3 Consensus size: 70
151951163 GAGTTAAGCC
** * *
151951173 TTTT-AATTTTTGTTTTTCAAAATCAACTCATTTGCTAGAGGTGAGTTGAGCCTCGGGGCACACT
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACACT
151951237 GAGGTA
65 GAGGTA
* *
151951243 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCAT-TTGCGAGAGGTGAGTTGAGCCTCAGGGCACAC
151951308 TGAGGTA
64 TGAGGTA
* *
151951315 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
151951338 ACGTTGTTCA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
70 4 0.05
71 28 0.33
72 52 0.62
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (70 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTG
AGGTA
Found at i:151951440 original size:140 final size:140
Alignment explanation
Indices: 151951270--151952036 Score: 1419
Period size: 140 Copynumber: 5.5 Consensus size: 140
151951260 TTAATTTCAA
151951270 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151951335 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
151951400 TCAAAATTAG
131 TCAAAATCAG
151951410 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151951475 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151951540 TCAAAATCAG
131 TCAAAATCAG
* *
151951550 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACT-AAGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
151951614 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151951679 TCAAAATCAG
131 TCAAAATCAG
*
151951689 CTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
151951754 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151951819 TCAAAATCAG
131 TCAAAATCAG
151951829 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
151951894 TTTATGTTGTTCAAGAATCAACTCATATTGCGATAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151951959 TCAAAATCAG
131 TCAAAATCAG
*
151951969 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAATTTCTGT-TTT
151952034 CAA
63 CAA
151952037 AAAAAAAATT
Statistics
Matches: 611, Mismatches: 12, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 135 0.22
140 447 0.73
142 23 0.04
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:151951626 original size:279 final size:280
Alignment explanation
Indices: 151951270--151952036 Score: 1419
Period size: 279 Copynumber: 2.7 Consensus size: 280
151951260 TTAATTTCAA
151951270 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151951335 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
151951400 TCAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
*
151951465 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
151951530 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
* *
151951550 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACT-AAGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
151951614 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
151951679 TCAAAATCAGCTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
151951744 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
151951809 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
151951829 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
151951894 TTTATGTTGTTCAAGAATCAACTCATATTGCGATAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
151951959 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAAT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAAT
151952024 TTCTGTCTTTCAA
194 TTCTGT-TTTCAA
151952037 AAAAAAAATT
Statistics
Matches: 470, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
279 273 0.58
280 168 0.36
282 23 0.05
283 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (280 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
TTCTACTTTTTCAAAATCAG
Found at i:151951892 original size:13 final size:13
Alignment explanation
Indices: 151951874--151951907 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
151951864 CGCTGAGGTA
*
151951874 TTTTCAATTTCTG
1 TTTTCAATTTATG
151951887 TTTTCAATTTATG
1 TTTTCAATTTATG
151951900 TTGTTCAA
1 TT-TTCAA
151951908 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:151952154 original size:72 final size:72
Alignment explanation
Indices: 151951956--151952181 Score: 285
Period size: 72 Copynumber: 3.0 Consensus size: 72
151951946 AATTTCTACT
* ** * * *
151951956 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
151952019 TCAATTTCTG
63 TCAATTTCTG
*
151952029 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAAACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
151952094 AATTTCAATTTCTG
59 AATTTCAATTTCTG
151952108 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
151952173 ATTTCTG
66 ATTTCTG
151952180 TT
1 TT
151952182 CAAAATGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 23 0.17
80 4 0.03
81 30 0.22
82 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:151952188 original size:49 final size:49
Alignment explanation
Indices: 151952135--151952230 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
151952125 ATATTGCGAG
*
151952135 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
151952184 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
151952231 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:151952277 original size:121 final size:121
Alignment explanation
Indices: 151952063--151952302 Score: 408
Period size: 121 Copynumber: 2.0 Consensus size: 121
151952053 ATATTGCGAG
*
151952063 AAATGAGTTGAGCCTCAAGAAACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGAAACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* *
151952128 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
151952184 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGAAACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
151952249 TTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
151952303 TTTTAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGAAACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:151952435 original size:74 final size:75
Alignment explanation
Indices: 151952184--151952535 Score: 401
Period size: 78 Copynumber: 4.7 Consensus size: 75
151952174 TTTCTGTTCA
* * * *
151952184 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
151952246 ATATTACGAG
66 ATATTGCAAG
* * *
151952256 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTTAAAAAAAAAATCAA
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG-TTTTT--CAAAAAAATCAA
*
151952321 CTCATATTGTAAG
63 CTCATATTGCAAG
*
151952334 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
151952398 ATATTGCAAG
66 ATATTGCAAG
** * * *
151952408 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTTC-AAAAAATCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
**
151952471 ATATTGTGAG
66 ATATTGCAAG
*** * * *
151952481 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATAAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
151952536 TTTCTGCCTT
Statistics
Matches: 244, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
72 52 0.21
73 31 0.13
74 53 0.22
75 35 0.14
76 5 0.02
77 6 0.02
78 62 0.25
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (75 bp):
AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCAAG
Found at i:151952463 original size:152 final size:148
Alignment explanation
Indices: 151952184--151952535 Score: 424
Period size: 152 Copynumber: 2.4 Consensus size: 148
151952174 TTTCTGTTCA
* * * *
151952184 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * * *
151952246 ATATTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTTAAAA
66 ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG--TTTT---C
151952311 AAAAAATCAACTCATATTGTAAG
126 AAAAAATCAACTCATATTGTAAG
*
151952334 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* ** *
151952398 ATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
66 ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
*
151952463 ATCAACTCATATTGTGAG
131 ATCAACTCATATTGTAAG
*** * * *
151952481 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATAAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
151952536 TTTCTGCCTT
Statistics
Matches: 175, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
147 37 0.21
149 31 0.18
150 45 0.26
151 5 0.03
152 48 0.27
153 9 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (148 bp):
AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTACAAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
ATCAACTCATATTGTAAG
Found at i:151952598 original size:94 final size:94
Alignment explanation
Indices: 151952458--151952629 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
151952448 TTCTGTTTTC
* *
151952458 AAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
*
151952523 TTCCGTTTTTCAATTTCTGCCTTTAAAAA
66 TTCCGTCTTTCAATTTCTGCCTTTAAAAA
** * *
151952552 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCAA
*
151952616 TTTCTGTCTTTCAA
65 TTTCCGTCTTTCAA
151952630 AAAAATCAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 2 0.03
94 67 0.97
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (94 bp):
AAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTCCGTCTTTCAATTTCTGCCTTTAAAAA
Found at i:151952724 original size:76 final size:77
Alignment explanation
Indices: 151952551--151952902 Score: 250
Period size: 76 Copynumber: 4.5 Consensus size: 77
151952541 GCCTTTAAAA
* * *
151952551 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
* *
151952616 TTTCTGTCTTTC
66 TTTATATCTTTC
*
151952628 AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGATCACACACTGAGCTA--TTTT
151952691 CAATTTATAT-TTT-
63 CAATTTATATCTTTC
* * * ** * ** *
151952704 TAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTTA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACT-GAGCTA-TTTT-
* * *
151952768 AAATATGTTTTTCAGATTCTGTTT
63 -CA-A----TTT-ATA-TCT-TTC
** * * * * ***
151952792 TCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
* *
151952857 TTT-T-TTTTTT
66 TTTATATCTTTC
151952867 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
151952903 ACTTTTTAAT
Statistics
Matches: 222, Mismatches: 33, Indels: 41
0.75 0.11 0.14
Matches are distributed among these distances:
75 11 0.05
76 80 0.36
77 50 0.23
78 15 0.07
79 1 0.00
80 3 0.01
83 3 0.01
84 3 0.01
85 2 0.01
86 1 0.00
87 6 0.03
88 46 0.21
89 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:151952922 original size:30 final size:30
Alignment explanation
Indices: 151952886--151952946 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
151952876 CAACTCATAT
151952886 TGCGAGAGGTGAGTTGAACT-TTTTAATTTC
1 TGCGAGAGGTGAGTTG-ACTCTTTTAATTTC
* *
151952916 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGACTCTTTTAATTTC
151952946 T
1 T
151952947 ATTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGACTCTTTTAATTTC
Found at i:151953013 original size:248 final size:239
Alignment explanation
Indices: 151952356--151953117 Score: 722
Period size: 248 Copynumber: 3.1 Consensus size: 239
151952346 CCTCAAGACA
* * * *
151952356 TGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-CATATTGCAAGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCT-TTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AA
* * * * * * * * *
151952420 CCTCAG--GACACGCTGAGGTA--ATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGTGAG
64 CTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAG
** * *** ** ** * *
151952481 AGGCAAGTTGAGCCTC-AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCT-GCC
129 AGGTGAGTTGAACCTCGA-GTCACATATCGAGGTATTTTCAAAATATGCTTTTCAA--GCTAG--
* *
151952544 TTTAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
189 TTT----CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * * *
151952599 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAGC
1 TGCTGAGCTATTTTCAATTTCT-TTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAC
*
151952664 TTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGA
65 TTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGA
* * * * * * *
151952729 TGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAATATGTTTTTCAGATTCT-GTTTT
130 GGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATATGCTTTTCA-A-GCTAG-TTT
* *
151952793 C-AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACG
192 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
151952840 TGCTGAGCTATTTTCAATTT-TTTTTTTAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAA
1 TGCTGAGCTATTTTCAATTTCTTTTTTTAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTT-AA
* * * * * * *
151952904 CTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTTCAAAAATCAACTCA
64 C--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTAAAAAATCAACTCA
* *
151952967 TATTGCGAGAGGTGAGTTGAACCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAA
120 CATTGCGAGAGGTGAGTTGAACC-TCGAGTCACATATCGAGGTATTTTCAAAATATGCTTTTCAA
151953031 GCTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
184 GCT-AGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
151953088 TGCTGAGCTATTTTCAATTTCTATTTTTAA
1 TGCTGAGCTATTTTCAATTTCTTTTTTTAA
151953118 TGTCTGTTTT
Statistics
Matches: 443, Mismatches: 53, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
239 11 0.02
240 27 0.06
241 64 0.14
242 1 0.00
243 48 0.11
244 21 0.05
245 13 0.03
246 7 0.02
247 92 0.21
248 144 0.33
249 15 0.03
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (239 bp):
TGCTGAGCTATTTTCAATTTCTTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAACT
TCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGAG
GTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTCAAAATATGCTTTTCAAGCTAGTTTCAAA
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
Found at i:151955786 original size:31 final size:32
Alignment explanation
Indices: 151955751--151955811 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
151955741 AAAAAAACTT
*
151955751 AATAATCCAATGACTTAAAT-AAAATTTTTTG
1 AATAATCCAATGACTTAAATGAAAAATTTTTG
* *
151955782 AATAATTCAATGATTTAAATGAAAAATTTT
1 AATAATCCAATGACTTAAATGAAAAATTTT
151955812 CAAAAAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (32 bp):
AATAATCCAATGACTTAAATGAAAAATTTTTG
Found at i:151956493 original size:12 final size:12
Alignment explanation
Indices: 151956476--151956508 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
151956466 TGGCCCTCCG
151956476 ATATTAATTTTT
1 ATATTAATTTTT
151956488 ATATT-ATTTTT
1 ATATTAATTTTT
151956499 ATA-TAATTTT
1 ATATTAATTTT
151956509 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:151956544 original size:18 final size:20
Alignment explanation
Indices: 151956509--151956549 Score: 68
Period size: 18 Copynumber: 2.1 Consensus size: 20
151956499 ATATAATTTT
151956509 AAAATATATATAATACATCA
1 AAAATATATATAATACATCA
151956529 AAAATAT-TATAA-ACATCA
1 AAAATATATATAATACATCA
151956547 AAA
1 AAA
151956550 TTGAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.43
19 5 0.24
20 7 0.33
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATATATATAATACATCA
Found at i:151956649 original size:30 final size:30
Alignment explanation
Indices: 151956613--151956677 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
151956603 TAACTTAACA
151956613 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
** *
151956643 AACAAATGTTTTTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
151956673 AACAA
1 AACAA
151956678 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.26
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:151957569 original size:30 final size:31
Alignment explanation
Indices: 151957535--151957602 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
151957525 AAGTTAAGAC
* *
151957535 TAAAATTCA-AAATTTGAAAAAATACAAA-AT
1 TAAAATTCAGAAA-TTCAAAAAATAAAAATAT
* *
151957565 TAAAATTGAGACATTCAAAAAATAAAAATAT
1 TAAAATTCAGAAATTCAAAAAATAAAAATAT
151957596 TAAAATT
1 TAAAATT
151957603 GATCAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 21 0.66
31 11 0.34
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (31 bp):
TAAAATTCAGAAATTCAAAAAATAAAAATAT
Found at i:151959884 original size:36 final size:36
Alignment explanation
Indices: 151959837--151959909 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
151959827 TTTCCATCAG
151959837 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
151959873 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
151959909 T
1 T
151959910 ATTTTTGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (36 bp):
TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
Found at i:151963721 original size:42 final size:42
Alignment explanation
Indices: 151963662--151963750 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
151963652 ATATGATTCC
*
151963662 TTTTTTGTTTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
1 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
*
151963704 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCC
1 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
151963746 TTTTT
1 TTTTT
151963751 GGTTTTTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.49
Consensus pattern (42 bp):
TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
Found at i:151966428 original size:15 final size:16
Alignment explanation
Indices: 151966403--151966436 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
151966393 AATGTGGACT
*
151966403 ATTAGTTTTTCTATTA
1 ATTAGTTTTTCTAATA
151966419 ATTA-TTTTTCTAATA
1 ATTAGTTTTTCTAATA
151966434 ATT
1 ATT
151966437 CTTTAACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTAGTTTTTCTAATA
Found at i:151968191 original size:28 final size:26
Alignment explanation
Indices: 151968127--151968181 Score: 85
Period size: 28 Copynumber: 2.1 Consensus size: 26
151968117 AAGCCCCCCC
151968127 AAAA-AAAACCTAACCCCCAAAAAAA
1 AAAAGAAAACCTAACCCCCAAAAAAA
151968152 AAAAGAAAAACCTAAACCCCCAAAAAAA
1 AAAAG-AAAACCT-AACCCCCAAAAAAA
151968180 AA
1 AA
151968182 CCAAGAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 4 0.15
27 7 0.26
28 16 0.59
ACGTcount: A:0.69, C:0.25, G:0.02, T:0.04
Consensus pattern (26 bp):
AAAAGAAAACCTAACCCCCAAAAAAA
Found at i:151979081 original size:69 final size:71
Alignment explanation
Indices: 151978963--151979100 Score: 190
Period size: 69 Copynumber: 2.0 Consensus size: 71
151978953 TTTTCAAGGG
* * *
151978963 AAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTACGAAAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151979028 TTTTCA
66 TTTTCA
* ** * *
151979034 AAATCAACTCATATTGCGAAAG-T-AGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTACGAAAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151979097 TTTT
66 TTTT
151979101 AAATTGACTC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
69 38 0.64
70 1 0.02
71 20 0.34
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (71 bp):
AAATCAACTCATATTACGAAAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTCA
Found at i:151979135 original size:69 final size:70
Alignment explanation
Indices: 151978963--151979135 Score: 181
Period size: 69 Copynumber: 2.5 Consensus size: 70
151978953 TTTTCAAGGG
* * * * *
151978963 AAATCAACTCATATTACGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151979028 TTTTCA
66 TTTT-A
* * ** * *
151979034 AAATCAACTCATATTGCGA-AAGT-AGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
151979097 TTTT-
66 TTTTA
** * *
151979101 AAATTGACTCACATTGTGAGAGGTGAGTTAAGCCT
1 AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
151979136 TTTAATTTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
67 15 0.18
68 3 0.04
69 47 0.55
70 2 0.02
71 18 0.21
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (70 bp):
AAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:151979256 original size:72 final size:71
Alignment explanation
Indices: 151979135--151979300 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
151979125 GAGTTAAGCC
** * *
151979135 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
151979199 TGAGGTA
65 TGAGGTA
*
151979206 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
151979271 TGAGGTA
65 TGAGGTA
* *
151979278 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
151979301 ACGTTTTCAA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:151979296 original size:13 final size:13
Alignment explanation
Indices: 151979278--151979310 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
151979268 CGCTGAGGTA
151979278 TTTTCAATTT-CTG
1 TTTTCAATTTAC-G
151979291 TTTTCAATTTACG
1 TTTTCAATTTACG
151979304 TTTTCAA
1 TTTTCAA
151979311 GAATCAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 18 0.95
14 1 0.05
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.58
Consensus pattern (13 bp):
TTTTCAATTTACG
Found at i:151979518 original size:140 final size:140
Alignment explanation
Indices: 151979233--151979997 Score: 1421
Period size: 139 Copynumber: 5.5 Consensus size: 140
151979223 TTAATTTCAA
151979233 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151979298 TTTACGTT-TTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151979362 TCAAAATCAG
131 TCAAAATCAG
151979372 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151979437 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151979502 TCAAAATCAG
131 TCAAAATCAG
*
151979512 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
151979577 TTTACGTTGTT-AAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
151979641 TCAAAATCAA
131 TCAAAATCAG
151979651 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
151979715 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151979780 TCAAAATCAG
131 TCAAAATCAG
*
151979790 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
151979855 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
151979920 TCAAAATCAG
131 TCAAAATCAG
151979930 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
151979994 TCAA
62 TCAA
151979998 AAAAAAAATT
Statistics
Matches: 612, Mismatches: 7, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
138 36 0.06
139 276 0.45
140 272 0.44
142 22 0.04
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:151979811 original size:418 final size:420
Alignment explanation
Indices: 151979229--151979997 Score: 1456
Period size: 418 Copynumber: 1.8 Consensus size: 420
151979219 TGTTTTAATT
151979229 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
*
151979294 TCAATTTACGTTTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACT
66 TCAATTTACGTTTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACT
151979359 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAA
131 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAA
*
151979424 TTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTT
196 TTTCTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTT
151979489 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-GCTA
261 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAGCTA
151979552 AGGTATTTTCAATTTCTGT-TTTCAATTTACGTTGTTAAGAATCAACTCATATTGCGAGAAGTGG
325 AGGTATTTTCAATTTCTGTCTTTCAATTTACGTTGTTAAGAATCAACTCATATTGCGAGAAGTGG
151979616 GTTGAACCTTTTAATTTCTACTTTTTCAAAA
390 GTTGAACCTTTTAATTTCTACTTTTTCAAAA
151979647 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT-AGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
151979711 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTAC
66 TCAATTTACGTT-TTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTAC
151979776 TTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCA
130 TTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCA
151979841 ATTTCTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTT
195 ATTTCTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTT
151979906 TAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCT
260 TAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA-GCT
*
151979971 GAGGTATTTTCAATTTCTGTCTTTCAA
324 AAGGTATTTTCAATTTCTGTCTTTCAA
151979998 AAAAAAAATT
Statistics
Matches: 343, Mismatches: 3, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
417 35 0.10
418 280 0.82
420 22 0.06
421 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (420 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
TCAATTTACGTTTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACT
TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAA
TTTCTATTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTT
AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACAGCTAA
GGTATTTTCAATTTCTGTCTTTCAATTTACGTTGTTAAGAATCAACTCATATTGCGAGAAGTGGG
TTGAACCTTTTAATTTCTACTTTTTCAAAA
Found at i:151979851 original size:13 final size:13
Alignment explanation
Indices: 151979833--151979857 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
151979823 CACGCTGAGG
151979833 TATTTTCAATTTC
1 TATTTTCAATTTC
151979846 TATTTTCAATTT
1 TATTTTCAATTT
151979858 ACGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:151980115 original size:72 final size:72
Alignment explanation
Indices: 151979917--151980142 Score: 285
Period size: 72 Copynumber: 3.0 Consensus size: 72
151979907 AATTTCTACT
* ** * * *
151979917 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACAT--TGAGGTAATT
151979980 TCAATTTCTG
63 TCAATTTCTG
151979990 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
151980055 AATTTCAATTTCTG
59 AATTTCAATTTCTG
*
151980069 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
151980134 ATTTCTG
66 ATTTCTG
151980141 TT
1 TT
151980143 CAAAATGAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
78 4 0.03
79 20 0.15
80 4 0.03
81 35 0.26
82 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
ATTTCTG
Found at i:151980238 original size:121 final size:121
Alignment explanation
Indices: 151980024--151980263 Score: 408
Period size: 121 Copynumber: 2.0 Consensus size: 121
151980014 ATATTGCGAG
* *
151980024 AAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
*
151980089 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
151980145 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTATTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
* * *
151980210 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
151980264 TTTCAAAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:151980270 original size:272 final size:274
Alignment explanation
Indices: 151979903--151980417 Score: 777
Period size: 272 Copynumber: 1.9 Consensus size: 274
151979893 GGGTTGAACC
* ** *
151979903 TTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACAT
1 TTTTAATTTCTAC-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG-T-ACAT
*
151979968 GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTT
63 GCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTT
* * *
151980033 GAGCCTCAAGACACATTGAGGTAATTTCAATTTCTG-TTTTC-AAAATTCAACTCATATTGCGAG
128 GAGCCTCAAGACACACTGAGATAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAG
*
151980096 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTC
193 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTC
151980161 AAGACACGCTGAGGTAA
258 AAGACACGCTGAGGTAA
*
151980178 TTTTAATTTCTA-TTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAG-ACATG
1 TTTTAATTTCTACTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGTACATG
* *
151980241 CTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTG
64 CTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTG
** * *
151980306 AGCCTCAAGACATGCTGAGATATTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAG
129 AGCCTCAAGACACACTGAGATAATTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAG
** *
151980371 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
193 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
151980418 GTCAAAAAAA
Statistics
Matches: 216, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
272 96 0.44
273 14 0.06
274 29 0.13
275 77 0.36
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (274 bp):
TTTTAATTTCTACTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGTACATGCT
GAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
CCTCAAGACACACTGAGATAATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAA
TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAG
ACACGCTGAGGTAA
Found at i:151980315 original size:79 final size:75
Alignment explanation
Indices: 151980148--151980499 Score: 410
Period size: 79 Copynumber: 4.7 Consensus size: 75
151980138 CTGTTCAAAA
* *
151980148 TGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTTCT-ATTTTC--AAAATTCAACTCAT
1 TGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCAT
*
151980209 ATTGCGAGAAA
65 ATTGCGAGAAG
* *
151980220 TTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCAACT
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC----AAAAAAATCAACT
* *
151980285 CATATTGTGAGAAA
62 CATATTGCGAGAAG
* * *
151980299 TGAGTTGAGCCTCAAGACATGCTGAGATATTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
*
151980364 TTGCGAGAGG
66 TTGCGAGAAG
* * * *
151980374 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTA
1 TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
* *
151980438 TTGTGAGAGG
66 TTGCGAGAAG
* * *
151980448 CGAGTTGAGCCTCAGGTCACACGAC-GAGGTATTTTCAATTTCCGTTTTTCAA
1 TGAGTTGAGCCTCAAG--ACACG-CTGAGGTATTTTCAATTTCTGTTTTTCAA
151980500 TTTCTGCCTT
Statistics
Matches: 245, Mismatches: 23, Indels: 19
0.85 0.08 0.07
Matches are distributed among these distances:
71 5 0.02
72 33 0.13
73 5 0.02
74 44 0.18
75 61 0.25
76 22 0.09
77 7 0.03
79 68 0.28
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (75 bp):
TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
TTGCGAGAAG
Found at i:151980575 original size:93 final size:94
Alignment explanation
Indices: 151980421--151980592 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 94
151980411 TTCTGTTGTC
* * *
151980421 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGACGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGACGAGCTATTTTCAA
*
151980486 TTTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAAA
* * *
151980515 AAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT-TGGCTCACGCG-CTGAGCTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGAC-GAGCTATTTTC
*
151980577 AATTTCTGTCTTTCAA
64 AATTTCCGTCTTTCAA
151980593 AAAAAAATCA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 3 0.04
93 42 0.62
94 23 0.34
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (94 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGACGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:151980624 original size:79 final size:79
Alignment explanation
Indices: 151980493--151981087 Score: 406
Period size: 88 Copynumber: 7.2 Consensus size: 79
151980483 CAATTTCCGT
**
151980493 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTTGGC
1 TTTTCAATTTCTGTTTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
*
151980557 TCACGCGCTGAGCTA
65 TCACGTGCTGAGCTA
* * *
151980572 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGA
1 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
*** *
151980636 TCACACACTGAGGTA
65 TCACGTGCTGAGCTA
* * * * *
151980651 TTTTTTCAATTTATATTTTTC--AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGG
1 --TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG
* * *
151980714 GTCACATG-TCGAGGTA
64 CTCACGTGCT-GAGCTA
** ** *
151980730 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A--------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
151980795 GCCTTGGCTCACGTGCTGAGCTA
57 GCCTTGGCTCACGTGCTGAGCTA
* *
151980818 TTTTCAATTTCTGTTTTTTTTC-AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTT
1 TTTTCAATTTCTG---TTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC---C
** * * *
151980882 TAATTTCTGCGA-GAGTTGAGTTGA
60 T--TGGCT-C-ACGTGCTGAGCT-A
* * *
151980906 GTCTTTTAATTTCTGTTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCA
1 -T-TTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-G
* * *
151980967 G-TCACAT-ATCGAGGTA
63 GCTCACGTGCT-GAGCTA
** *
151980983 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTTTTTC-A---AA-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
151981048 GCCTTGGCTCACGTGCTGAGCTA
57 GCCTTGGCTCACGTGCTGAGCTA
151981071 TTTTCAATTTCTGTTTT
1 TTTTCAATTTCTGTTTT
151981088 AATGTCTGTT
Statistics
Matches: 405, Mismatches: 62, Indels: 89
0.73 0.11 0.16
Matches are distributed among these distances:
75 14 0.03
76 1 0.00
77 18 0.04
78 36 0.09
79 89 0.22
80 2 0.00
81 50 0.12
84 34 0.08
86 3 0.01
87 15 0.04
88 122 0.30
89 4 0.01
90 11 0.03
91 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (79 bp):
TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
CACGTGCTGAGCTA
Done.