Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 492 of 770
Found at i:152287598 original size:13 final size:13
Alignment explanation
Indices: 152287580--152287606 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
152287570 GTTATTCATA
152287580 ATTAATATGAATT
1 ATTAATATGAATT
152287593 ATTAATATGAATT
1 ATTAATATGAATT
152287606 A
1 A
152287607 GAGACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:152287795 original size:19 final size:21
Alignment explanation
Indices: 152287767--152287816 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
152287757 AAATTAAAAT
152287767 TTTATATATATA-TTTAT-TA
1 TTTATATATATATTTTATATA
*
152287786 TTTATCTATATATTTTATATA
1 TTTATATATATATTTTATATA
152287807 TTTA-ATATAT
1 TTTATATATAT
152287817 TTAATATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 11 0.41
20 10 0.37
21 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATATATATATTTTATATA
Found at i:152287915 original size:17 final size:17
Alignment explanation
Indices: 152287893--152287931 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
152287883 CTGACTCCAT
*
152287893 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
152287910 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
152287927 TTTTA
1 TTTTA
152287932 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:152288097 original size:15 final size:17
Alignment explanation
Indices: 152288067--152288098 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
152288057 GTCAAAATCT
152288067 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
152288084 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
152288099 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:152288748 original size:18 final size:18
Alignment explanation
Indices: 152288721--152288763 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
152288711 CGCATAAAAA
* *
152288721 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
152288739 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
152288757 GAAAGAA
1 GAAAGAA
152288764 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:152294072 original size:41 final size:41
Alignment explanation
Indices: 152294027--152294144 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
152294017 TGAAAGATAA
152294027 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
152294068 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152294098 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152294139 ATGTAG
1 ATGTAG
152294145 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:152294083 original size:71 final size:71
Alignment explanation
Indices: 152293995--152294158 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
152293985 GAGATGTATC
152293995 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152294060 AGGACA
66 AGGACA
152294066 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152294131 AGGACA
66 AGGACA
152294137 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
152294159 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:152301623 original size:41 final size:41
Alignment explanation
Indices: 152301578--152301695 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
152301568 TGAAAGATAA
152301578 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
152301619 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152301649 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152301690 ATGTAG
1 ATGTAG
152301696 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:152301634 original size:71 final size:71
Alignment explanation
Indices: 152301546--152301709 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
152301536 GAGATGTATC
152301546 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152301611 AGGACA
66 AGGACA
152301617 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152301682 AGGACA
66 AGGACA
152301688 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
152301710 AGATAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:152311235 original size:27 final size:26
Alignment explanation
Indices: 152311191--152311242 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
152311181 CTCGCTTCAA
*
152311191 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
152311218 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
152311243 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:152311284 original size:2 final size:2
Alignment explanation
Indices: 152311279--152311304 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
152311269 CGCCACACAC
152311279 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
152311305 CTGTTCTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:152311353 original size:27 final size:26
Alignment explanation
Indices: 152311301--152311360 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
152311291 ATATATATAT
*
152311301 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
152311327 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
152311354 ATATCTG
1 ATATCTG
152311361 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:152314489 original size:94 final size:94
Alignment explanation
Indices: 152314328--152314797 Score: 859
Period size: 94 Copynumber: 5.0 Consensus size: 94
152314318 AATGTGACCG
* * * *
152314328 TATATGCTATTTGAATTAAGTAAGTTTCCATATTATAATGAGTTAACATTGGTACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
152314393 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
152314422 TATATGCTATTTGAATTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
152314487 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
152314516 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTACG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
152314581 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
152314610 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
152314675 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
152314704 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
152314769 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
152314798 GAATGTCGAT
Statistics
Matches: 366, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 366 1.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:152322508 original size:94 final size:94
Alignment explanation
Indices: 152322347--152322814 Score: 837
Period size: 94 Copynumber: 5.0 Consensus size: 94
152322337 TGTGACTGTG
* * * *
152322347 TATGCTATATGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGTACTATGTGTGCGGA
1 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
152322412 ATTAAATGTCACTTTGTGTGCAGATTTTA
66 ATTAAATGTCACTTTGTGTGCAGATTTTA
*
152322441 TATGCTATTTGAATTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
1 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
*
152322506 ATTAAATGTCACTTTGTGTGTAGATTTTA
66 ATTAAATGTCACTTTGTGTGCAGATTTTA
* *
152322535 TATGCTATTTGAATTAAGTAAATTGACTTATTATAATGAGTTAACATTGGCACTATGTGTACGGA
1 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
*
152322600 ATTAAATGTCACTTTGTGTGTAGATTTTA
66 ATTAAATGTCACTTTGTGTGCAGATTTTA
152322629 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
1 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
152322694 ATTAAATGTCACTTTGTGTGCAGATTTTA
66 ATTAAATGTCACTTTGTGTGCAGATTTTA
152322723 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
1 TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
* *
152322788 ATTAAATGGCACTATGTGTGCAGATTT
66 ATTAAATGTCACTTTGTGTGCAGATTT
152322815 GAATGTCGAT
Statistics
Matches: 360, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 360 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (94 bp):
TATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGA
ATTAAATGTCACTTTGTGTGCAGATTTTA
Found at i:152327080 original size:43 final size:42
Alignment explanation
Indices: 152327033--152327183 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
152327023 CCAGACCTGT
* *
152327033 TCTTACATGTAATCAAATATCGATGCCATTGTCCCAGACAGGG
1 TCTTACACGAAATCAAATATCGATGCCA-TGTCCCAGACAGGG
* *
152327076 TCTTACACGAAATCAAATA-CGATGCCGATGTCCTAGACATGG
1 TCTTACACGAAATCAAATATCGATGCC-ATGTCCCAGACAGGG
* * * *
152327118 TCTTACATGTAAATCTCAA-ATCGATGCCAACGTCCCAAAC-GTGG
1 TCTTACACG-AAATC-AAATATCGATGCC-ATGTCCCAGACAG-GG
*
152327162 TCTTACACGAAATCACATATCG
1 TCTTACACGAAATCAAATATCG
152327184 GAATCCTATG
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.32
43 33 0.38
44 27 0.31
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
TCTTACACGAAATCAAATATCGATGCCATGTCCCAGACAGGG
Found at i:152327114 original size:42 final size:41
Alignment explanation
Indices: 152327033--152327176 Score: 139
Period size: 42 Copynumber: 3.4 Consensus size: 41
152327023 CCAGACCTGT
* *
152327033 TCTTACATGTAATCAAATATCGATGCCATTGTCCCAGACAGGG
1 TCTTACACGAAATCAAATA-CGATGCCA-TGTCCCAGACAGGG
* *
152327076 TCTTACACGAAATCAAATACGATGCCGATGTCCTAGACATGG
1 TCTTACACGAAATCAAATACGATGCC-ATGTCCCAGACAGGG
* * *
152327118 TCTTACATGTAAATCTCAAAT-CGATGCCAACGTCCCAAAC-GTGG
1 TCTTACACG-AAA--TCAAATACGATGCC-ATGTCCCAGACAG-GG
152327162 TCTTACACGAAATCA
1 TCTTACACGAAATCA
152327177 CATATCGGAA
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.04
42 27 0.32
43 24 0.28
44 25 0.29
45 6 0.07
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
TCTTACACGAAATCAAATACGATGCCATGTCCCAGACAGGG
Found at i:152328616 original size:9 final size:9
Alignment explanation
Indices: 152328602--152328626 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
152328592 TCAAAGCATC
152328602 AATACATGA
1 AATACATGA
152328611 AATACATGA
1 AATACATGA
152328620 AATACAT
1 AATACAT
152328627 TACTTAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (9 bp):
AATACATGA
Found at i:152334840 original size:29 final size:29
Alignment explanation
Indices: 152334806--152334966 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
152334796 TACTCGATTT
** * *
152334806 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
152334835 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
152334864 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
152334893 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
152334922 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
152334951 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
152334967 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:152355394 original size:24 final size:24
Alignment explanation
Indices: 152355355--152355406 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
152355345 CCAGTTAGGT
* *
152355355 TCCCAGCGGTGCTCCGACGATCCA
1 TCCCAGCGATGATCCGACGATCCA
*
152355379 TCCCAGCGATGATCCGGCGATCCA
1 TCCCAGCGATGATCCGACGATCCA
152355403 TCCC
1 TCCC
152355407 GGGATATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.42, G:0.23, T:0.17
Consensus pattern (24 bp):
TCCCAGCGATGATCCGACGATCCA
Found at i:152355534 original size:58 final size:59
Alignment explanation
Indices: 152355442--152355556 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 59
152355432 TCCCTCCCCA
* *
152355442 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACC
1 ATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACC
*
152355501 ATCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAA
1 ATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAA
152355557 TCGTCCCTGT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 48 0.91
59 5 0.09
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (59 bp):
ATCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACC
Found at i:152357842 original size:128 final size:128
Alignment explanation
Indices: 152357664--152358289 Score: 730
Period size: 128 Copynumber: 4.9 Consensus size: 128
152357654 TGGATATGCA
* *
152357664 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-AGGAGCCTCGGCCACCATCGGC
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGA-GAGCCTCGGGCACCATCGGC
* * *
152357728 AACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
64 AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
152357793 GGAGCCTCGGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
* ***
152357858 CCTAGGCCCCTGGTCGTGCGGGATCCTCAAACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
152357920 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
* * * * **
152357984 ACCTAGGCCCCTAGTCGTGTGGGAGCCTCGGGCACCATCGGCACCCTTGGCCTTTGGTCGTGCG
65 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * ** * * *
152358048 AGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGC
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC
* * * *
152358111 AACCTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
64 AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* ** * * * *
152358176 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGAGAGCCTCGGGCACCATCGG
* ** * * * *
152358239 C-ACCTTGGTGCTTGGAT-GTGCGGAAGCCTCGGACACCATAGGCAACCTAGG
63 CAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
152358290 ACGTTGGATG
Statistics
Matches: 440, Mismatches: 49, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
126 5 0.01
127 113 0.26
128 268 0.61
129 52 0.12
130 2 0.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (128 bp):
GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:152357851 original size:85 final size:86
Alignment explanation
Indices: 152357664--152358289 Score: 775
Period size: 85 Copynumber: 7.3 Consensus size: 86
152357654 TGGATATGCA
* * *
152357664 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
152357729 ACCTAGGCCCTTGGTCGTGCA
66 ACCTAGGCCCCTGGTCGTGCG
* *
152357750 GGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACTATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
152357814 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * ***
152357835 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGATCCTCAAACACCATCGG-A
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
152357899 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
152357920 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
152357984 ACCTAGGCCCCTAGTCGTGTG
66 ACCTAGGCCCCTGGTCGTGCG
* * * ** *
152358005 GGAGCCTCGGGCACCATCGGCACCCTTGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* ** *
152358069 ACCTTGGTGCTTGGAT-GTGCG
66 ACCTAGGCCCCTGG-TCGTGCG
* * *
152358090 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
152358155 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * ** * * *
152358176 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGG
* ** *
152358239 C-ACCTTGGTGCTTGGAT-GTGCG
64 CAACCTAGGCCCCTGG-TCGTGCG
* *
152358261 GAAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
152358290 ACGTTGGATG
Statistics
Matches: 470, Mismatches: 60, Indels: 20
0.85 0.11 0.04
Matches are distributed among these distances:
84 53 0.11
85 240 0.51
86 176 0.37
87 1 0.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (86 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCCTGGTCGTGCG
Found at i:152358198 original size:171 final size:171
Alignment explanation
Indices: 152357664--152358289 Score: 809
Period size: 171 Copynumber: 3.7 Consensus size: 171
152357654 TGGATATGCA
*
152357664 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-AGGAGCCTCG-GCCACCATCGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGAG-CACCATCGG
* *
152357727 CAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTGC
64 C-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGC
*
152357792 GGGAGCCTC-GGCACTATCGGCAACCTAGGCCCCTGGTCGTGCG
128 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * * *
152357835 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGATCCTCAAACACCATCGGAA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCA
*
152357900 CCTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
66 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
* *
152357964 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTGTG
131 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * *
152358005 GGAGCCTCGGGCACCATCGGCACCCTTGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCA
* ** * *
152358070 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCTG
66 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* *
152358134 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
130 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * * * *
152358176 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGAGCACCATCGG
* ** * *
152358239 CACCTTGGTGCTTGGAT-GTGCGGAAGCCTCGGACACCATAGGCAACCTAGG
64 CACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
152358290 ACGTTGGATG
Statistics
Matches: 403, Mismatches: 45, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
169 45 0.11
170 132 0.33
171 225 0.56
172 1 0.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (171 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCA
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:152358218 original size:43 final size:43
Alignment explanation
Indices: 152357616--152358312 Score: 779
Period size: 43 Copynumber: 16.3 Consensus size: 43
152357606 GACGTCAGTG
* * * * *
152357616 GTGCGAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * *
152357659 ATGCAGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152357702 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
152357745 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152357788 GTGCGGGAGCCTC-GGCACTATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152357830 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *** *
152357873 GTGCGGGATCCTCAAACACCATCGG-AACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152357915 GTGCGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152357957 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
152358000 GTGTGGGAGCCTCGGGCACCATCGGCACCCTTGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
152358043 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
152358085 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
152358128 GTGCTGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
152358171 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TC
* * * * **
152358214 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * *
152358256 GTGCGGAAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
152358299 GTGCGGGTGCCTCG
1 GTGCGGGAGCCTCG
152358313 AGCAGCAGGG
Statistics
Matches: 575, Mismatches: 68, Indels: 22
0.86 0.10 0.03
Matches are distributed among these distances:
41 13 0.02
42 159 0.28
43 396 0.69
44 7 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:152358342 original size:43 final size:43
Alignment explanation
Indices: 152358004--152358348 Score: 208
Period size: 43 Copynumber: 8.1 Consensus size: 43
152357994 CTAGTCGTGT
* * * *
152358004 GGGAGCCTCGGGCACCATCGGCACCCTTG-GCCTTTGG-TCGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCTGGTGCC-TCGGAT-GTGC
* * * * *
152358047 GAGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGATGTGC
* * * *
152358089 GGGAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG-TCGTGC
1 GGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGAT-GTGC
* * * * * * *
152358132 TGGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGG-TCGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCT-GGTGCCTCGGAT-GTGC
* * *
152358175 GGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGATGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGATGTGC
* * * *
152358218 GGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGATGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGATGTGC
* * * * *
152358260 GGAAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGATGTGC
1 GGGAGCCTCGAG-CACCATAGGCACCCT-GGTGCCTCGGATGTGC
* * **
152358303 GGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGC
1 GGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGATGTGC
152358346 GGG
1 GGG
152358349 CTAAAGGAAA
Statistics
Matches: 253, Mismatches: 35, Indels: 28
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.01
42 65 0.26
43 182 0.72
44 4 0.02
ACGTcount: A:0.14, C:0.30, G:0.36, T:0.19
Consensus pattern (43 bp):
GGGAGCCTCGAGCACCATAGGCACCCTGGTGCCTCGGATGTGC
Found at i:152361689 original size:58 final size:59
Alignment explanation
Indices: 152361598--152361718 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
152361588 CCCTCCTCAA
* *
152361598 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
152361657 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
152361715 TCCC
1 TCCC
152361719 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:152362635 original size:85 final size:85
Alignment explanation
Indices: 152362449--152363196 Score: 896
Period size: 85 Copynumber: 8.8 Consensus size: 85
152362439 TGGATATGCA
* * * *
152362449 GGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCA
* *
152362514 ACCTAGGCCCTTGGTCGTGCA
65 ACCTAGGCCCCTGGTCGTGCG
* * *
152362535 GGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTACGGGAGCCTCGGCACCATCGGCAA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
152362600 CCTAGGCCCCTGGTCGTGCG
66 CCTAGGCCCCTGGTCGTGCG
* * **
152362620 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGG-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
152362684 ACCTAGG-CCCTGGTCGTGCG
65 ACCTAGGCCCCTGGTCGTGCG
* *
152362704 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
*
152362768 ACCTAGGCCCCTAGTCGTGCG
65 ACCTAGGCCCCTGGTCGTGCG
* * * * *
152362789 GGAGCCTCGGGCACCATC-GCACCCTTGGCCC-TGGTCGTGCGAGAGCCTCGGGACCATCAGC-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
*
152362851 CCTAGGCCCTTGGTCGTGCG
66 CCTAGGCCCCTGGTCGTGCG
* ** * *
152362871 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTGGGACACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGC
152362934 AACCTAGGCCCCTGGTCGTGC-
64 AACCTAGGCCCCTGGTCGTGCG
* **
152362955 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGC
* *
152363018 AACCTAGGCCCTTGGTCGTGCC
64 AACCTAGGCCCCTGGTCGTGCG
*
152363040 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCA
* **
152363104 ACCTTGGTGCCTCGGAT-GTGCG
65 ACCTAGGCCCCT-GG-TCGTGCG
* * * * ** *
152363126 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGC
152363189 AACCTAGG
64 AACCTAGG
152363197 ACGTTGGATG
Statistics
Matches: 587, Mismatches: 57, Indels: 36
0.86 0.08 0.05
Matches are distributed among these distances:
82 44 0.07
83 82 0.14
84 132 0.22
85 193 0.33
86 133 0.23
87 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (85 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
CCTAGGCCCCTGGTCGTGCG
Found at i:152362752 original size:126 final size:126
Alignment explanation
Indices: 152362449--152363196 Score: 904
Period size: 126 Copynumber: 5.9 Consensus size: 126
152362439 TGGATATGCA
* * * *
152362449 GGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGTA
1 GGAGCCTCGG-CACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
152362514 ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTACG
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTGGTCGTGCG
*
152362578 GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
1 GGAGCCTCGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* **
152362643 CCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGG-AACCTAGGCCCTGGTCGTGCG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCG
152362704 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGG-CACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
152362768 ACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGCACCATC-GCACCCTTGGCCCTGGTCGTGCG
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCG
* * * *
152362830 AGAGCCTCGGGACCATCAGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AC
1 GGAGCCTCGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * *
152362894 CTTGGTGCTTGGAT-GTGCGGGAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGC-
66 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTGGTCGTGCG
* ** * *
152362955 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
1 GGAGCCTC-GGCACCATCGGCACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA
* * *
152363019 ACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCC-TGGTCGTGCG
* ** * * *
152363083 GGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC
1 GGAGCCTC-GGCACCATCGGCACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* ** *
152363147 -ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
63 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
152363197 ACGTTGGATG
Statistics
Matches: 547, Mismatches: 58, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
124 30 0.05
125 62 0.11
126 196 0.36
127 65 0.12
128 157 0.29
129 37 0.07
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (126 bp):
GGAGCCTCGGCACCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCG
Found at i:152363125 original size:43 final size:42
Alignment explanation
Indices: 152362401--152363219 Score: 865
Period size: 43 Copynumber: 19.3 Consensus size: 42
152362391 GACGTCAGTG
* * * * *
152362401 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* * *
152362444 ATGCAGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
152362487 GTGCAGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * *
152362530 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
152362573 GTACGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
152362615 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
*** *
152362658 GTGCGGGAGCCTCAAACACCATCGGAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
152362699 GTGCGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
152362741 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
*
152362784 GTGCGGGAGCCTCGGGCACCATC-GCACCCTTGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTC
* *
152362825 GTGCGAGAGCCTCGGG-ACCATCAGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* **
152362866 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
152362908 GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGG-CACCATCGG-CACCTAGGCCCTTGGTC
* **
152362951 GTGC-GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
*
152362992 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
152363035 GTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * *
152363078 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* * * * **
152363121 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * *
152363163 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TC
*
152363206 GTGCGGGTGCCTCG
1 GTGCGGGAGCCTCG
152363220 AGCAGCAGGG
Statistics
Matches: 677, Mismatches: 74, Indels: 50
0.85 0.09 0.06
Matches are distributed among these distances:
40 27 0.04
41 84 0.12
42 187 0.28
43 372 0.55
44 7 0.01
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
Found at i:152375244 original size:24 final size:24
Alignment explanation
Indices: 152375217--152375270 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
152375207 CCGATTAGGT
* *
152375217 TCCCGGCGGTGCTCCGACAATCCA
1 TCCCGGCGATGATCCGACAATCCA
* * *
152375241 TCCCAGCGATGATCCGGCGATCCA
1 TCCCGGCGATGATCCGACAATCCA
152375265 TCCCGG
1 TCCCGG
152375271 GATATACAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.41, G:0.26, T:0.17
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACAATCCA
Found at i:152375396 original size:58 final size:59
Alignment explanation
Indices: 152375305--152375425 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
152375295 CCCTCCCCAA
* *
152375305 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGATACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
* * *
152375364 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
152375422 TCCC
1 TCCC
152375426 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGATACCCAACAATGAATGAACCG
Found at i:152375710 original size:13 final size:13
Alignment explanation
Indices: 152375692--152375717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
152375682 ACACATGAAT
152375692 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
152375705 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
152375718 AGCAAGCAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (13 bp):
GTCGCCTGGTAGC
Found at i:152380942 original size:24 final size:24
Alignment explanation
Indices: 152380867--152380943 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
152380857 CCGGTTAGGT
* *
152380867 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * **
152380891 TTCCGGCGGTGGTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
152380915 TCCCGGCAGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
152380939 TCCCG
1 TCCCG
152380944 AAATATAGAA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.09, C:0.38, G:0.34, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:152381237 original size:43 final size:42
Alignment explanation
Indices: 152381171--152381971 Score: 769
Period size: 43 Copynumber: 18.8 Consensus size: 42
152381161 GACGTCAGTG
* * * *
152381171 GTGCGAGAGCCTC-GAGCAGCATCGGCACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGA-CACCATCGGCACCTAGG-CCCTTGG-TC
* * *
152381214 ATGCAGGAGCCTCGGACACCATCGGTGACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGG-CACCTAGGCCCTTGGTC
* *
152381257 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* * *
152381300 GTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* *
152381343 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* * *
152381386 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
** * *
152381429 GTGCGGGAGCCTCAAACACCATCGGAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTC
* * *
152381471 GTGCGGGAG-CTCGAACACCATCGGCAACCTAAGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* *
152381513 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* * *
152381556 GTGCGGGAGCCTCGGGCACCATCGGTACCCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCA-CCTAGGCCCTTGGTC
* * * * * *
152381599 GTACGAGAGCCTTGG-GACCATCAGCACCTAGGCCCTCGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTC
* * * * **
152381640 GTGCAGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TC
* * *
152381682 GTGCGGGAGCCTGGGACACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGACACCATCGG-CACCTAGGCCCTTGGTC
* *
152381725 GTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTG--CTTGGAT-
1 GTGCGGGAGCCTCGGACACCATCGGCACC-TAG-GCCCTTGG-TC
152381767 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTC
* * *
152381810 GTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGG-CACCTAGGCCCTTGGTC
* * * *
152381853 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-
1 GTGCGGGAGCCTCGGACACCATCGGCACCTAGG-CCCTTGG-TC
* * * * **
152381896 GTGCGAGAGCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-TC
* *
152381938 GTGCGGGAGCCTCAGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGACACCATCGGC-ACCTAGG
152381972 ACGTTGAATG
Statistics
Matches: 652, Mismatches: 82, Indels: 48
0.83 0.10 0.06
Matches are distributed among these distances:
41 39 0.06
42 167 0.26
43 436 0.67
44 10 0.02
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.17
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTC
Found at i:152381547 original size:85 final size:86
Alignment explanation
Indices: 152381219--152381971 Score: 872
Period size: 86 Copynumber: 8.8 Consensus size: 86
152381209 TGGATATGCA
* ** * *
152381219 GGAGCCTCGGACACCATCGGTGACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
152381284 ACCTAGGCCCTTGGTCGTGCA
66 ACCTAGGCCCCTGGTCGTGCG
* *
152381305 GGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
152381370 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * ***
152381391 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGG-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
152381455 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
** * *
152381476 GGAG-CTCGAACACCATCGGCAACCTAAGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
152381540 ACCTAGGCCCCTGGTCGTGCG
66 ACCTAGGCCCCTGGTCGTGCG
* * * * * * *
152381561 GGAGCCTCGGGCACCATCGGTACCCTTGGCCCTTGGTCGTACGAGAGCCTTGGG-ACCATCAGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
152381624 ACCTAGG-CCCTCGGTCGTGCA
66 ACCTAGGCCCCT-GGTCGTGCG
* * **
152381645 GGAGCCTCGGGCACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGG
*
152381707 TAACCTAGGCCCCTGGTCGTGCG
64 CAACCTAGGCCCCTGGTCGTGCG
* *
152381730 AGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GTGCGGGAGCCTCGGACACCATCG
1 GGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCG
* *
152381791 GCAACCTAGGCCCTTGGTCGTGCC
63 GCAACCTAGGCCCCTGGTCGTGCG
*
152381815 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* **
152381879 ACCTTGGTGCCTCGGAT-GTGCG
66 ACCTAGGCCCCT-GG-TCGTGCG
* * * * * ** * * *
152381901 AGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATAGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
152381964 AACCTAGG
65 AACCTAGG
152381972 ACGTTGAATG
Statistics
Matches: 579, Mismatches: 69, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
82 3 0.01
83 24 0.04
84 96 0.17
85 209 0.36
86 245 0.42
87 2 0.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (86 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCCTGGTCGTGCG
Found at i:152381935 original size:128 final size:129
Alignment explanation
Indices: 152381219--152381971 Score: 849
Period size: 128 Copynumber: 5.9 Consensus size: 129
152381209 TGGATATGCA
* * * *
152381219 GGAGCCTCGGACACCATCGGTGACCTAGG-CCCTTGGTCGTGC-AGGAGCCTCGGCCACCATCGG
1 GGAGCCTCGGGCACCATCGG-CACCTAGGTCCCTCGGTCGTGCGA-GAGCCTCGGGCACCATCGG
* * *
152381282 CAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCCTGGTCGTGC
64 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGC
152381347 G
129 G
*
152381348 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GGTCGTGCGAGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGTCCCTCGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* ***
152381412 AACCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
** * * *
152381476 GGAG-CTCGAACACCATCGGCAACCTAAGCCCCT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGTCCCTCGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * *
152381539 AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCCTTGGCCCTTGGTCGTACG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
* * *
152381604 AGAGCCTTGGG-ACCATCAGCACCTAGG-CCCTCGGTCGTGC-AGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGCACCTAGGTCCCTCGGTCGTGCGA-GAGCCTCGGGCACCATCGGC
* * **
152381666 -ACTTTGGTGCTTGGAT-GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTG
65 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG-CACCATCGGTAACCTAGGCCCCTGGTCGTG
152381728 CG
128 CG
* * * * *
152381730 AGAGCCTCGGGCACCATCGGCACCTTA-GT-GCTTGGAT-GTGCGGGAGCCTCGGACACCATCGG
1 GGAGCCTCGGGCACCATCGGCACC-TAGGTCCCTCGG-TCGTGCGAGAGCCTCGGGCACCATCGG
* *
152381792 CAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC
64 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGC
152381857 G
129 G
* * * * *
152381858 GGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-GTGCGAGAGCCTCGAGCAGCATTGGC
1 GGAGCCTCGGGCACCATCGGCACCTAGGTCCCTCGG-TCGTGCGAGAGCCTCGGGCACCATCGGC
* ** * * * *
152381922 -ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCAGACACCATAGGCAACCTAGG
65 AACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
152381972 ACGTTGAATG
Statistics
Matches: 540, Mismatches: 64, Indels: 41
0.84 0.10 0.06
Matches are distributed among these distances:
125 3 0.01
126 63 0.12
127 170 0.31
128 175 0.32
129 124 0.23
130 5 0.01
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (129 bp):
GGAGCCTCGGGCACCATCGGCACCTAGGTCCCTCGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
Found at i:152382026 original size:43 final size:43
Alignment explanation
Indices: 152381632--152382030 Score: 187
Period size: 43 Copynumber: 9.3 Consensus size: 43
152381622 GCACCTAGGC
* * * **
152381632 CCTCGG-TCGTGCAGGAGCCTCGGGCACCATCGGCACTTTGGTG
1 CCTCGGAT-GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
* * * * * *
152381675 -CTTGGATGTGCGGGAGCCT-GGGACACCATCGGTAACCTAG-G
1 CCTCGGATGTGCGGGAGCCTCGAG-CACCATAGGCACCCTGGTG
* * * * * *
152381716 CCCCTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTAGTG
1 CCTC-GGAT-GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
* * * *
152381760 -CTTGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTAGG-C
1 CCTCGGATGTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTG
* * * * * * *
152381802 CCTTGG-TCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CCTCGGAT-GTGCGGGAGCCTCGAGCACCATAGGCACCCT-GGTG
* * * *
152381845 CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CCTCGGAT-GTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
* * * *
152381888 CCTCGGATGTGCGAGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CCTCGGATGTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
* * *
152381931 -CTTGGATGTGCGGGAGCCTC-AGACACCATAGGCAACCTAGG-A
1 CCTCGGATGTGCGGGAGCCTCGAG-CACCATAGGCACCCT-GGTG
* * * * * **
152381973 CGTTGAATGTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTG
1 CCTCGGATGTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
152382016 CCTCGGATGTGCGGG
1 CCTCGGATGTGCGGG
152382031 CTAAAGGAAA
Statistics
Matches: 286, Mismatches: 50, Indels: 40
0.76 0.13 0.11
Matches are distributed among these distances:
41 7 0.02
42 91 0.32
43 180 0.63
44 8 0.03
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (43 bp):
CCTCGGATGTGCGGGAGCCTCGAGCACCATAGGCACCCTGGTG
Found at i:152390481 original size:25 final size:25
Alignment explanation
Indices: 152390447--152390494 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
152390437 CTACAAGTCG
*
152390447 TCCCGGTCCCTCCCTTTTCGAACCA
1 TCCCGGTCCCTCCCCTTTCGAACCA
152390472 TCCCGGTCCCTCCCCTTTCGAAC
1 TCCCGGTCCCTCCCCTTTCGAAC
152390495 AAGATCCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.10, C:0.50, G:0.12, T:0.27
Consensus pattern (25 bp):
TCCCGGTCCCTCCCCTTTCGAACCA
Found at i:152396899 original size:39 final size:39
Alignment explanation
Indices: 152396845--152397024 Score: 281
Period size: 39 Copynumber: 4.6 Consensus size: 39
152396835 AATGTTCGAG
*
152396845 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
* *
152396884 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTAT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
* *
152396923 GATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTAT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
*
152396961 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
*
152397000 GATATCCGGGTTAAGTCCCGAAGGC
1 GATATCCGGGCTAAG-CCCGAAGGC
152397025 CTTTGTGCGG
Statistics
Matches: 132, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
38 38 0.29
39 85 0.64
40 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
Found at i:152396980 original size:116 final size:118
Alignment explanation
Indices: 152396845--152397064 Score: 354
Period size: 116 Copynumber: 1.9 Consensus size: 118
152396835 AATGTTCGAG
152396845 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
** *
152396909 ATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAATTGGCGAGTTAT
66 ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGGCGAGTTAT
* *
152396961 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCC
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
* * *
152397026 TTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
66 ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGC
152397065 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 53 0.56
117 32 0.34
118 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (118 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGGCGAGTTAT
Found at i:152396988 original size:77 final size:78
Alignment explanation
Indices: 152396845--152397024 Score: 281
Period size: 77 Copynumber: 2.3 Consensus size: 78
152396835 AATGTTCGAG
*
152396845 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCAA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGCAA
* *
152396910 TTGTGCGAGTTAT
66 TTGTGCAAATTAT
* *
152396923 GATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGCAA
*
152396987 TTGTGCAAATTGT
66 TTGTGCAAATTAT
*
152397000 GATATCCGGGTTAAGTCCCGAAGGC
1 GATATCCGGGCTAAG-CCCGAAGGC
152397025 CTTTGTGCGG
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 56 0.60
78 38 0.40
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (78 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCGGGCTAAGCCCGAAGGCAA
TTGTGCAAATTAT
Found at i:152404991 original size:39 final size:39
Alignment explanation
Indices: 152404937--152405117 Score: 290
Period size: 39 Copynumber: 4.6 Consensus size: 39
152404927 AATGTTCGAG
*
152404937 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
* *
152404976 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTAT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
* *
152405015 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTAT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
*
152405054 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGT
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
*
152405093 GATATCCGGGTTAAGTCCCGAAGGC
1 GATATCCGGGCTAAG-CCCGAAGGC
152405118 CTTTGTGCGG
Statistics
Matches: 134, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 125 0.93
40 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTAT
Found at i:152405080 original size:117 final size:119
Alignment explanation
Indices: 152404937--152405157 Score: 356
Period size: 117 Copynumber: 1.9 Consensus size: 119
152404927 AATGTTCGAG
152404937 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
** *
152405001 ATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTAT
66 ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTAT
* *
152405054 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCC
1 GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
* * *
152405119 TTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
66 ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGC
152405158 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
117 53 0.56
118 32 0.34
119 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (119 bp):
GATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTAT
Found at i:152408757 original size:54 final size:54
Alignment explanation
Indices: 152408678--152408784 Score: 178
Period size: 54 Copynumber: 2.0 Consensus size: 54
152408668 ATTATCGTTG
* *
152408678 CAGGGGATTTAGCCTGGACTGGTAATCCCGACATTGCTCTATGAGTTTATACTA
1 CAGGGGATTTAGCCTAGACTAGTAATCCCGACATTGCTCTATGAGTTTATACTA
* *
152408732 CAGGGGATTTAGCCTAGACTAGTAATCCTGACATTGTTCTATGAGTTTATACT
1 CAGGGGATTTAGCCTAGACTAGTAATCCCGACATTGCTCTATGAGTTTATACT
152408785 GGTAATCCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (54 bp):
CAGGGGATTTAGCCTAGACTAGTAATCCCGACATTGCTCTATGAGTTTATACTA
Found at i:152411067 original size:22 final size:22
Alignment explanation
Indices: 152411042--152411094 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
152411032 TTGTATGCTA
152411042 ATAAATG-TACTTAAATTGTGTT
1 ATAAATGCT-CTTAAATTGTGTT
*
152411064 ATAAATGCTTTTAAATTGTGTT
1 ATAAATGCTCTTAAATTGTGTT
152411086 ATAAATGCT
1 ATAAATGCT
152411095 TATTTATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (22 bp):
ATAAATGCTCTTAAATTGTGTT
Found at i:152411095 original size:22 final size:22
Alignment explanation
Indices: 152411052--152411095 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
152411042 ATAAATGTAC
152411052 TTAAATTGTGTTATAAATGCTT
1 TTAAATTGTGTTATAAATGCTT
152411074 TTAAATTGTGTTATAAATGCTT
1 TTAAATTGTGTTATAAATGCTT
152411096 ATTTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.50
Consensus pattern (22 bp):
TTAAATTGTGTTATAAATGCTT
Found at i:152411331 original size:42 final size:44
Alignment explanation
Indices: 152411280--152411389 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 44
152411270 TCAGTATGAT
*
152411280 ATTATATGTAAGACCATGTCTGGGAC-A-TGGCATCGATACAAA
1 ATTACATGTAAGACCATGTCTGGGACTATTGGCATCGATACAAA
* * ** *
152411322 ATTTCATGTAAAACCATAG-CTGGG-CTATTGGCATCGATATGAG
1 ATTACATGTAAGACCAT-GTCTGGGACTATTGGCATCGATACAAA
*
152411365 ATTACATGTAAGACCATATCTGGGA
1 ATTACATGTAAGACCATGTCTGGGA
152411390 AGGACTTATG
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.02
42 20 0.37
43 33 0.61
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (44 bp):
ATTACATGTAAGACCATGTCTGGGACTATTGGCATCGATACAAA
Found at i:152411373 original size:43 final size:42
Alignment explanation
Indices: 152411233--152411388 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 42
152411223 GGTTATTGAG
* * * * *
152411233 ATGAGAATACATGTAAGACCTTATCTGGGATATGGTATC-AGT
1 ATGAGATTACATGTAAGACCATAGCTGGGCTATGGCATCGA-T
* *
152411275 ATGATATTATATGTAAGACCAT-GTCTGGGAC-ATGGCATCGAT
1 ATGAGATTACATGTAAGACCATAG-CTGGG-CTATGGCATCGAT
** * * *
152411317 ACAAAATTTCATGTAAAACCATAGCTGGGCTATTGGCATCGAT
1 ATGAGATTACATGTAAGACCATAGCTGGGCTA-TGGCATCGAT
*
152411360 ATGAGATTACATGTAAGACCATATCTGGG
1 ATGAGATTACATGTAAGACCATAGCTGGG
152411389 AAGGACTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 53 0.60
43 35 0.39
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACCATAGCTGGGCTATGGCATCGAT
Found at i:152412355 original size:24 final size:24
Alignment explanation
Indices: 152412328--152412373 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
152412318 ATGGTATAAG
152412328 GATGATGAATTGGTACATTTTGAT
1 GATGATGAATTGGTACATTTTGAT
*
152412352 GATGATGAATTGGTATATTTTG
1 GATGATGAATTGGTACATTTTG
152412374 TGGCATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.43
Consensus pattern (24 bp):
GATGATGAATTGGTACATTTTGAT
Found at i:152416914 original size:43 final size:42
Alignment explanation
Indices: 152416853--152416985 Score: 149
Period size: 51 Copynumber: 2.9 Consensus size: 42
152416843 GGACATGTGG
*
152416853 CATCCGAGCTCGCTGAGAGGTCTGAGTTCATTATGGATGTAA
1 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTAA
* *
152416895 CCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGGTGGATGCAATTCATGTAA
1 -CATCCGAGCTCGTTGAGAGGTCTGAGTTCAT--T--ATG-----GATGTAA
152416947 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
1 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
152416986 AGTTACATGT
Statistics
Matches: 76, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
42 3 0.04
43 29 0.38
45 1 0.01
47 6 0.08
49 1 0.01
51 30 0.39
52 6 0.08
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (42 bp):
CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTAA
Found at i:152424724 original size:27 final size:27
Alignment explanation
Indices: 152424686--152425024 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
152424676 AAAGTACTCC
152424686 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
152424713 C-AGGTTATAGAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
152424740 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
152424767 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
152424794 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
152424821 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
152424848 CAATTTACATAATTATTGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
152424874 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
152424901 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
152424928 CGATTTACAGAATTGCCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
152424955 CGATTTATAGAATTACTGTTTCACTCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
152424982 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
152425009 CGATTTATAAAATTAC
1 CGATTTACAGAATTAC
152425025 TGAAATACCC
Statistics
Matches: 271, Mismatches: 36, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
26 26 0.10
27 243 0.90
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:152425159 original size:27 final size:27
Alignment explanation
Indices: 152425082--152425159 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
152425072 AAATGACTAA
* *
152425082 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
152425109 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
152425136 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
152425160 GAATATGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:152426410 original size:9 final size:9
Alignment explanation
Indices: 152426398--152426454 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
152426388 TTTGATAAAC
152426398 ATGATATGT
1 ATGATATGT
*
152426407 ATGATATGCAC
1 ATGATATG--T
*
152426418 ATGACATGT
1 ATGATATGT
*
152426427 ATGATATGCAC
1 ATGATATG--T
152426438 ATGATATGT
1 ATGATATGT
152426447 ATGATATG
1 ATGATATG
152426455 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:152426421 original size:20 final size:20
Alignment explanation
Indices: 152426396--152426458 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
152426386 ATTTTGATAA
152426396 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
152426416 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
152426436 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
152426456 ACA
1 ACA
152426459 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:152426569 original size:24 final size:23
Alignment explanation
Indices: 152426513--152426678 Score: 208
Period size: 23 Copynumber: 7.0 Consensus size: 23
152426503 GAGGAAGTGA
152426513 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
152426536 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
152426559 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
**
152426583 CAAAAGGGCTTGCGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
152426607 TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
152426630 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
152426654 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
152426678 A
1 A
152426679 TGATAAAGCA
Statistics
Matches: 124, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 59 0.48
24 55 0.44
25 10 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:152426629 original size:71 final size:69
Alignment explanation
Indices: 152426513--152426677 Score: 231
Period size: 71 Copynumber: 2.3 Consensus size: 69
152426503 GAGGAAGTGA
*
152426513 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTT-GGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCA
152426578 GTTATC
64 GTTATC
* * *
152426584 AAAAGGGCTTGCGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATAAAAGGGCTTTTTCCCCAG
1 AAAAGGGCTTG-GCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAG
*
152426649 TTATT
65 TTATC
*
152426654 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTGGCC-CCAGTTAT
152426678 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
70 29 0.34
71 56 0.66
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (69 bp):
AAAAGGGCTTGGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGT
TATC
Found at i:152430254 original size:40 final size:40
Alignment explanation
Indices: 152430209--152430338 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
152430199 CGGAATATAA
152430209 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
152430249 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
152430289 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
152430329 CCGGATATAA
1 CCGGATATAA
152430339 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:152430353 original size:40 final size:39
Alignment explanation
Indices: 152430225--152430375 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
152430215 ATAACCATGT
* * *
152430225 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
152430265 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
152430305 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
152430344 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
152430376 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:152430359 original size:80 final size:79
Alignment explanation
Indices: 152430209--152430375 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
152430199 CGGAATATAA
*
152430209 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
152430274 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
152430289 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
152430351 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
152430368 CCGGATAT
1 CCGGATAT
152430376 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:152438268 original size:40 final size:40
Alignment explanation
Indices: 152438223--152438389 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
152438213 CGGAATATAA
*
152438223 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
152438263 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
152438303 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
152438343 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
152438382 CCGGATAT
1 CCGGATAT
152438390 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:152438373 original size:80 final size:79
Alignment explanation
Indices: 152438239--152438389 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
152438229 ATAACCATGT
*
152438239 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
152438304 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
152438319 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
152438382 CCGGATAT
64 CCGGATAT
152438390 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:152442939 original size:40 final size:40
Alignment explanation
Indices: 152442893--152443236 Score: 308
Period size: 40 Copynumber: 8.6 Consensus size: 40
152442883 TGAATGATAC
** *
152442893 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATGTAT
* * * * *
152442933 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* * * * *
152442973 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
*
152443013 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
152443052 CCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAG-TCC----CGAAGAGCATTCGTGCTAGTGATGTAT
* * * *
152443097 TCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
152443137 CCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
152443176 -CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
152443215 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
152443237 ATCATGCTGG
Statistics
Matches: 261, Mismatches: 28, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
38 10 0.04
39 76 0.29
40 130 0.50
41 8 0.03
44 2 0.01
45 35 0.13
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:152443053 original size:39 final size:40
Alignment explanation
Indices: 152443010--152443236 Score: 334
Period size: 40 Copynumber: 5.6 Consensus size: 40
152443000 CTTGTGGTTA
152443010 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152443049 TATCCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCC-----GAAGAGCATTCGTGCTAGTGATG
* *
152443094 TATTCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152443134 TATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152443173 TAT-CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
152443212 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
152443237 ATCATGCTGG
Statistics
Matches: 172, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
38 11 0.06
39 59 0.34
40 63 0.37
45 39 0.23
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:152443090 original size:45 final size:42
Alignment explanation
Indices: 152443010--152443218 Score: 296
Period size: 39 Copynumber: 5.2 Consensus size: 42
152443000 CTTGTGGTTA
152443010 TATCCGG-CTAAGTTCC--GAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAAGAGCATTCGTGCTAGTGATG
152443049 TATCCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCC---GAGAAGAGCATTCGTGCTAGTGATG
*
152443094 TATTCGGACTAAGTTCCGAG--GAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAAGAGCATTCGTGCTAGTGATG
152443134 TATCCGGACTAAGTT-C--GAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAAGAGCATTCGTGCTAGTGATG
152443173 TAT-CGGACTAAGTTCC--GAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAGAAGAGCATTCGTGCTAGTGATG
*
152443212 CATCCGG
1 TATCCGG
152443219 GCTAGGTCCC
Statistics
Matches: 157, Mismatches: 3, Indels: 19
0.88 0.02 0.11
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 57 0.36
40 46 0.29
42 3 0.02
45 39 0.25
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (42 bp):
TATCCGGACTAAGTTCCGAGAAGAGCATTCGTGCTAGTGATG
Found at i:152443458 original size:24 final size:25
Alignment explanation
Indices: 152443413--152443462 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
152443403 GTGTAATAAC
152443413 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
152443438 GAATGATTAAG-GCACTGTGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
152443462 G
1 G
152443463 TAAATCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:152445395 original size:13 final size:13
Alignment explanation
Indices: 152445377--152445401 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
152445367 TAATGGTATA
152445377 TTGAATCCATGAT
1 TTGAATCCATGAT
152445390 TTGAATCCATGA
1 TTGAATCCATGA
152445402 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:152446966 original size:48 final size:48
Alignment explanation
Indices: 152446907--152447368 Score: 870
Period size: 48 Copynumber: 9.6 Consensus size: 48
152446897 AAAGTGTAAT
152446907 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
152446955 TATGTGGTAAAGCCGAATGGCTAATATGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447003 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447051 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447099 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447147 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
152447195 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447243 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
152447291 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152447339 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
152447369 TGTTGTAACA
Statistics
Matches: 404, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 404 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:152447463 original size:37 final size:37
Alignment explanation
Indices: 152447413--152447535 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
152447403 GGAAATATAT
152447413 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
152447450 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
152447487 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
152447524 TCCGGGTAAGAC
1 TCCGGGTAAGAC
152447536 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:152449495 original size:40 final size:40
Alignment explanation
Indices: 152449449--152449792 Score: 317
Period size: 40 Copynumber: 8.6 Consensus size: 40
152449439 TGAATGATAC
** *
152449449 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATGTAT
* * * * *
152449489 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* * * * *
152449529 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
*
152449569 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
152449608 CCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAG-TCC----CGAAGAGCATTCGTGCTAGTGATGTAT
* * *
152449653 -CGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
152449692 CCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
152449731 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
152449771 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
152449793 ATCATGCTGG
Statistics
Matches: 263, Mismatches: 26, Indels: 30
0.82 0.08 0.09
Matches are distributed among these distances:
39 86 0.33
40 132 0.50
41 8 0.03
43 2 0.01
44 9 0.03
45 26 0.10
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:152449609 original size:39 final size:40
Alignment explanation
Indices: 152449566--152449792 Score: 343
Period size: 39 Copynumber: 5.6 Consensus size: 40
152449556 CTTGTGGTTA
152449566 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152449605 TATCCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCC-----GAAGAGCATTCGTGCTAGTGATG
*
152449650 TAT-CGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152449689 TATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
152449728 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
152449768 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
152449793 ATCATGCTGG
Statistics
Matches: 174, Mismatches: 6, Indels: 15
0.89 0.03 0.08
Matches are distributed among these distances:
39 70 0.40
40 65 0.37
44 13 0.07
45 26 0.15
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:152449842 original size:123 final size:119
Alignment explanation
Indices: 152449566--152449805 Score: 313
Period size: 123 Copynumber: 2.0 Consensus size: 119
152449556 CTTGTGGTTA
*
152449566 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGAA
1 TATCCGGACTAAGTGCC-AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC----AGAA
* * * * *
152449630 GAGCATTCGTGCTAGTGATGTATCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
61 GAGCATTCGTGCTAGTGATGCATCGGACTAAGTCCCGAAGAGCAATCATGCTAGTGATG
* *
152449689 TATCCGGACTAAGTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC-GAAGAGCA
1 TATCCGGACTAAGTGCCAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCAGAAGAGCA
* * *
152449753 TTCGTGCTAGTGATGCATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
66 TTCGTGCTAGTGATGCAT-CGGACTAAGTCCCGAAGAGCAATCATGCTAGTGA
152449806 CGTGTATTCG
Statistics
Matches: 106, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
118 25 0.24
119 27 0.25
123 46 0.43
124 8 0.08
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (119 bp):
TATCCGGACTAAGTGCCAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCAGAAGAGCA
TTCGTGCTAGTGATGCATCGGACTAAGTCCCGAAGAGCAATCATGCTAGTGATG
Found at i:152450014 original size:24 final size:25
Alignment explanation
Indices: 152449969--152450018 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
152449959 GTGTAATAAC
152449969 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
152449994 GAATGATTAAG-GCACTGTGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
152450018 G
1 G
152450019 TAAATCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:152451952 original size:13 final size:13
Alignment explanation
Indices: 152451934--152451958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
152451924 TAATGGTATA
152451934 TTGAATCCATGAT
1 TTGAATCCATGAT
152451947 TTGAATCCATGA
1 TTGAATCCATGA
152451959 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:152453523 original size:48 final size:48
Alignment explanation
Indices: 152453464--152453925 Score: 879
Period size: 48 Copynumber: 9.6 Consensus size: 48
152453454 AAAGTGTAAT
152453464 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
152453512 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453560 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453608 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453656 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453704 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
152453752 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453800 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
152453848 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
152453896 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
152453926 TGTTGTAACA
Statistics
Matches: 406, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 406 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:152454020 original size:37 final size:37
Alignment explanation
Indices: 152453970--152454092 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
152453960 GGAAATATAT
152453970 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
152454007 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
152454044 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
152454081 TCCGGGTAAGAC
1 TCCGGGTAAGAC
152454093 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:152457464 original size:25 final size:25
Alignment explanation
Indices: 152457435--152457482 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
152457425 TTATAATATG
* * *
152457435 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
152457460 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
152457483 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:152457533 original size:9 final size:9
Alignment explanation
Indices: 152457521--152457577 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
152457511 TTTGATAAAC
152457521 ATGATATGT
1 ATGATATGT
*
152457530 ATGATATGCAC
1 ATGATATG--T
*
152457541 ATGACATGT
1 ATGATATGT
*
152457550 ATGATATGCAC
1 ATGATATG--T
152457561 ATGATATGT
1 ATGATATGT
152457570 ATGATATG
1 ATGATATG
152457578 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:152457544 original size:20 final size:20
Alignment explanation
Indices: 152457519--152457581 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
152457509 ATTTTGATAA
152457519 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
152457539 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
152457559 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
152457579 ACA
1 ACA
152457582 CGAGATATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:152457705 original size:47 final size:47
Alignment explanation
Indices: 152457636--152457733 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
152457626 AGGAAGTGCA
152457636 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
*
152457683 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCTCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
152457731 AAA
1 AAA
152457734 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 23 0.48
48 15 0.31
49 10 0.21
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:152457751 original size:25 final size:24
Alignment explanation
Indices: 152457635--152457754 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
152457625 GAGGAAGTGC
152457635 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
152457659 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
152457683 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
152457706 AAAAAAGGGCTT-TGCCTCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
152457731 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
152457755 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 19 0.22
26 9 0.10
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:152457982 original size:31 final size:31
Alignment explanation
Indices: 152457947--152458010 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
152457937 CGTTTACAGT
152457947 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
152457978 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
152458009 AA
1 AA
152458011 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:152477174 original size:28 final size:28
Alignment explanation
Indices: 152477142--152477198 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
152477132 ATAAGCAAAG
152477142 TAAGCTTCGCAGCCTTTTCTCAAATATT
1 TAAGCTTCGCAGCCTTTTCTCAAATATT
152477170 TAAGCTTCGCAGCCTTTTCTCAAATATT
1 TAAGCTTCGCAGCCTTTTCTCAAATATT
152477198 T
1 T
152477199 CTAAGCTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.40
Consensus pattern (28 bp):
TAAGCTTCGCAGCCTTTTCTCAAATATT
Found at i:152494741 original size:80 final size:80
Alignment explanation
Indices: 152494657--152494805 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
152494647 TATGGTAACC
* * * *
152494657 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
152494721 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
152494737 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
152494802 CCGG
66 CCGG
152494806 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:152494747 original size:40 final size:38
Alignment explanation
Indices: 152494698--152494805 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
152494688 ATCACGATTT
*
152494698 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
152494738 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
152494778 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
152494806 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:152494826 original size:40 final size:40
Alignment explanation
Indices: 152494698--152494854 Score: 102
Period size: 40 Copynumber: 3.9 Consensus size: 40
152494688 ATCACGATTT
* * * * **
152494698 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGGCTTAACCCGGATATAATTTC-CA
* * * **** *
152494738 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGGCTTAACCCGGATATAATTTCCA
* *
152494778 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGGCTTAACCCGGATATAATTTCCA
* * * *
152494818 GCATAATTGTCTTCGGGGCTTAGCCCGGATATCATTT
1 GCACAATTGCCTTCGGGGCTTAACCCGGATATAATTT
152494855 AATTTCTCAT
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 90 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGGCTTAACCCGGATATAATTTCCA
Found at i:152497133 original size:15 final size:16
Alignment explanation
Indices: 152497109--152497138 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
152497099 TTTTTATTCT
152497109 TTTTACTTTTTTTGAC
1 TTTTACTTTTTTTGAC
152497125 TTTTA-TTTTTTTGA
1 TTTTACTTTTTTTGA
152497139 GAACAATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (16 bp):
TTTTACTTTTTTTGAC
Found at i:152498272 original size:22 final size:22
Alignment explanation
Indices: 152498224--152498283 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
152498214 ATGATAATAG
*
152498224 TAAAAAAATAGGAAAGAAAAAA
1 TAAAAAAATAGAAAAGAAAAAA
* *
152498246 GAAAAAAATAGAAATAG-CAAAA
1 TAAAAAAATAGAAA-AGAAAAAA
*
152498268 TAAAAATAATAAAAAA
1 TAAAAA-AATAGAAAA
152498284 ATAATAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
22 22 0.71
23 9 0.29
ACGTcount: A:0.77, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
TAAAAAAATAGAAAAGAAAAAA
Found at i:152498284 original size:17 final size:17
Alignment explanation
Indices: 152498264--152498328 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 17
152498254 TAGAAATAGC
152498264 AAAATAAAAATAATAAA
1 AAAATAAAAATAATAAA
152498281 AAAATAATAAA-AGTATATAA
1 AAAATAA-AAATA--ATA-AA
*
152498301 AAAATTAAAAT-ATAAA
1 AAAATAAAAATAATAAA
*
152498317 AAATTAAAAATA
1 AAAATAAAAATA
152498329 TAAGTATAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
16 11 0.28
17 11 0.28
18 3 0.08
19 6 0.15
20 8 0.21
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAATAAAAATAATAAA
Found at i:152498289 original size:20 final size:21
Alignment explanation
Indices: 152498266--152498304 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
152498256 GAAATAGCAA
152498266 AATAAAAATA-ATAAAAAAAT
1 AATAAAAATATATAAAAAAAT
*
152498286 AATAAAAGTATATAAAAAA
1 AATAAAAATATATAAAAAA
152498305 TTAAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (21 bp):
AATAAAAATATATAAAAAAAT
Found at i:152498739 original size:199 final size:200
Alignment explanation
Indices: 152498392--152498754 Score: 604
Period size: 199 Copynumber: 1.8 Consensus size: 200
152498382 TAATTAACCC
* *
152498392 AGTTTTCACATGGCCATGGACATGCTCGTGTGTCCAAGTCGTGTGGGTCACATGGCCATGTCGCC
1 AGTTTTCACATGGCCATGGACACGCTCGTGTGTCCAAGCCGTGTGGGTCACATGGCCATGTCGCC
* *
152498457 AGGCTGTGTATGTTTTCCTTCGCTTCTCCCACGCCCATGTGAGATCCCACATGCCCGTGTGGCCA
66 AAGCCGTGTATGTTTTCCTTCGCTTCTCCCACGCCCATGTGAGATCCCACATGCCCGTGTGGCCA
152498522 GGCCGTGTGCTCCACACACCCGTGTGGCCAAGCCGTGTAACTCTCCGACTTTGAAAAAAGAATAG
131 GGCCGTGTGCTCCACACACCCGTGTGGCCAAGCCGTGTAACTCTCCGACTTTGAAAAAAGAATAG
152498587 CTCCA
196 CTCCA
*
152498592 AGTTTT-ACATGGCC-TAGGACACGCTCGTGTGTCCAGGCCGTGTGGGTCACATGGCCATGTCGC
1 AGTTTTCACATGGCCAT-GGACACGCTCGTGTGTCCAAGCCGTGTGGGTCACATGGCCATGTCGC
* * * * *
152498655 CAAGCCGTGTATGTTTTCCTTCGCTTCTCCCACTCTCATGTGGGATTCCACCTGCCCGTGTGGCC
65 CAAGCCGTGTATGTTTTCCTTCGCTTCTCCCACGCCCATGTGAGATCCCACATGCCCGTGTGGCC
*
152498720 AGGCCGTGTGCTCCACACACCCTTGTGGCCAAGCC
130 AGGCCGTGTGCTCCACACACCCGTGTGGCCAAGCC
152498755 ATGTGGGTCA
Statistics
Matches: 151, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
198 1 0.01
199 144 0.95
200 6 0.04
ACGTcount: A:0.17, C:0.32, G:0.26, T:0.26
Consensus pattern (200 bp):
AGTTTTCACATGGCCATGGACACGCTCGTGTGTCCAAGCCGTGTGGGTCACATGGCCATGTCGCC
AAGCCGTGTATGTTTTCCTTCGCTTCTCCCACGCCCATGTGAGATCCCACATGCCCGTGTGGCCA
GGCCGTGTGCTCCACACACCCGTGTGGCCAAGCCGTGTAACTCTCCGACTTTGAAAAAAGAATAG
CTCCA
Found at i:152500157 original size:18 final size:18
Alignment explanation
Indices: 152500130--152500184 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
152500120 TATCTTCTTG
*
152500130 TCTCAGTTTTGGTTCATC
1 TCTCAATTTTGGTTCATC
152500148 TCTCAATTTTGGTTCATC
1 TCTCAATTTTGGTTCATC
152500166 TCTCAATTTTGGTTCATC
1 TCTCAATTTTGGTTCATC
152500184 T
1 T
152500185 TTAACTAACC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.15, C:0.22, G:0.13, T:0.51
Consensus pattern (18 bp):
TCTCAATTTTGGTTCATC
Found at i:152501696 original size:9 final size:9
Alignment explanation
Indices: 152501682--152501723 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
152501672 TTAGTAATTG
152501682 AAAATAAAA
1 AAAATAAAA
152501691 AAAATAAAA
1 AAAATAAAA
* *
152501700 AAAATGCAAT
1 AAAAT-AAAA
152501710 AAAATAAAA
1 AAAATAAAA
152501719 AAAAT
1 AAAAT
152501724 GGCTAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (9 bp):
AAAATAAAA
Found at i:152504726 original size:14 final size:14
Alignment explanation
Indices: 152504709--152504737 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
152504699 AGAAAGATTA
152504709 AAAATAATAATAAT
1 AAAATAATAATAAT
152504723 AAAATAATAATAAT
1 AAAATAATAATAAT
152504737 A
1 A
152504738 TACTCAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:152504939 original size:22 final size:20
Alignment explanation
Indices: 152504895--152504946 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
152504885 AATTAATTAG
**
152504895 TAAAATAAAAATAAATACTA
1 TAAAATAAAAATAAATAAAA
152504915 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAAAA
152504937 TAAAATAAAA
1 TAAAATAAAA
152504947 TTGGGGTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.29
21 4 0.14
22 16 0.57
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAAAA
Found at i:152512412 original size:16 final size:16
Alignment explanation
Indices: 152512391--152512422 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
152512381 TCTGTCCTCG
152512391 GCCCATGCTATTATCA
1 GCCCATGCTATTATCA
*
152512407 GCCCATGCTGTTATCA
1 GCCCATGCTATTATCA
152512423 CCCCTAGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (16 bp):
GCCCATGCTATTATCA
Found at i:152518556 original size:15 final size:15
Alignment explanation
Indices: 152518536--152518565 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
152518526 AAAAAAATAG
*
152518536 GCGTCCCTAACATCT
1 GCGTCCCCAACATCT
152518551 GCGTCCCCAACATCT
1 GCGTCCCCAACATCT
152518566 TTCATCCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.43, G:0.13, T:0.23
Consensus pattern (15 bp):
GCGTCCCCAACATCT
Found at i:152518681 original size:14 final size:16
Alignment explanation
Indices: 152518648--152518684 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
152518638 TGCCATTGAC
152518648 ATATAGAACTAGAAAT
1 ATATAGAACTAGAAAT
152518664 ATATAGAACTAGAAAT
1 ATATAGAACTAGAAAT
152518680 ATATA
1 ATATA
152518685 CTTACTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (16 bp):
ATATAGAACTAGAAAT
Found at i:152529084 original size:40 final size:40
Alignment explanation
Indices: 152529011--152529193 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
152529001 CCGCACCAAG
* * * * *
152529011 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
152529050 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
152529090 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
152529130 GCCTTCGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-T
* *
152529170 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
152529194 CATTCAATTT
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 13 0.11
40 99 0.84
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:152537095 original size:40 final size:40
Alignment explanation
Indices: 152537036--152537166 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
152537026 CGGGACTTTA
* * *
152537036 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
152537076 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
152537116 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
152537156 CCCGGATATAA
1 CCCGGATATAA
152537167 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:152541168 original size:40 final size:40
Alignment explanation
Indices: 152541083--152541233 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
152541073 AATTGAATGA
* * * **
152541083 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
152541123 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
152541164 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
152541203 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
152541234 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:152541247 original size:40 final size:40
Alignment explanation
Indices: 152541120--152541249 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
152541110 ATGCTGGAAA
* * *
152541120 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
152541160 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
152541200 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
152541240 TTATATCCGG
1 TTATATCCGG
152541250 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:152554937 original size:40 final size:40
Alignment explanation
Indices: 152554852--152555002 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
152554842 AATTGAATGA
* * * **
152554852 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
152554892 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
152554933 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
152554972 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
152555003 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:152555016 original size:40 final size:40
Alignment explanation
Indices: 152554889--152555018 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
152554879 ATGCTGGAAA
* * *
152554889 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
152554929 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
152554969 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
152555009 TTATATCCGG
1 TTATATCCGG
152555019 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:152569661 original size:264 final size:263
Alignment explanation
Indices: 152569183--152569739 Score: 656
Period size: 264 Copynumber: 2.1 Consensus size: 263
152569173 TTGCCAACTT
* *
152569183 TTTAACTTCAAAATTTTTTAGAATCTTA-GAGCTAGCAATTTAAGATTGCGACTCCCCTTTAAGG
1 TTTAACTTCAAAA-TTTTTAGAATCTTAGGAGCTAGCAATTTAAAATCGCGACTCCCCTTTAAGG
* * * * * *
152569247 TTCACCAATTTCATATTGCAACATTCAATCTTCAAAGATTTTCATAATCTTAGAGCTAGCGATTT
65 TTCACCAATTTAAGATTGCAACATTCAAACTTCAAAGATTTTAAGAATATTAGAGCTAGCGATTT
152569312 AAGATCATGACTCCCCTTTAAGGTTTTGAGATTTCAAATCACAACCTTCAAACTTCAAAGATTTT
130 AAGATCATGACTCCCCTTTAAGGTTTTGAGATTTCAAATCACAACCTTCAAACTTCAAAGATTTT
* * * * * **
152569377 CAAAATCTTAAAGCTAGCGATTTAAGATCGTGACAT-CCTTTTAAGGTTCGTCGATTTAAGATTG
195 CAAAACCATAAAGCTAGCGATTTAAGATCGCGAC-TCCCCTTTAAGGTTCGCCGATTTAAGATCA
152569441 CAACC
259 CAACC
* ** * *
152569446 TTTAACCTTCAAATATTTTCAGAATCTTAGGA-CTAGTGATTTAAAATCGCGACTGCCTTTTAAG
1 TTTAA-CTTCAAA-ATTTTTAGAATCTTAGGAGCTAGCAATTTAAAATCGCGACTCCCCTTTAAG
* ** * * *
152569510 GTTCGCTTATTTAAGATTGCAACCTTTAAACTTCAAAGATTTTAAGAATATTAGAGCTAGCTATT
64 GTTCACCAATTTAAGATTGCAACATTCAAACTTCAAAGATTTTAAGAATATTAGAGCTAGCGATT
* * ** * * ***
152569575 TAAGATCGTGGCTCTTCTTTATGGTTTTCTA-ATTT-AAGATTGTAACCTTCAAACTTCAAAGAT
129 TAAGATCATGACTCCCCTTTAAGGTTTT-GAGATTTCAA-ATCACAACCTTCAAACTTCAAAGAT
* * *
152569638 TTTCAAAACCATAGAGTTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTTGCCGATTTAAGAT
192 TTTCAAAACCATAAAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTCGCCGATTTAAGAT
152569703 CACAACC
257 CACAACC
*
152569710 TTCAAACTTCAAAGATTTTTAGAATCTTAG
1 TT-TAACTTCAAA-ATTTTTAGAATCTTAG
152569740 TGTTAGTAAT
Statistics
Matches: 246, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
263 8 0.03
264 232 0.94
265 6 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (263 bp):
TTTAACTTCAAAATTTTTAGAATCTTAGGAGCTAGCAATTTAAAATCGCGACTCCCCTTTAAGGT
TCACCAATTTAAGATTGCAACATTCAAACTTCAAAGATTTTAAGAATATTAGAGCTAGCGATTTA
AGATCATGACTCCCCTTTAAGGTTTTGAGATTTCAAATCACAACCTTCAAACTTCAAAGATTTTC
AAAACCATAAAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTCGCCGATTTAAGATCACA
ACC
Found at i:152569755 original size:88 final size:88
Alignment explanation
Indices: 152569186--152569739 Score: 560
Period size: 88 Copynumber: 6.3 Consensus size: 88
152569176 CCAACTTTTT
* * *
152569186 AACTTCAAA-ATTTTTTAGAATCTTAGAGCTAGCAATTTAAGATTGCGACTCCCCTTTAAGGTTC
1 AACTTCAAAGA-TTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTC
* * * * *
152569250 ACCAATTTCATATTGCAACATTCA
65 GCCGATTTAAGATTGCAACCTTCA
* * ** *
152569274 ATCTTCAAAGATTTTCATAATCTTAGAGCTAGCGATTTAAGATCATGACTCCCCTTTAAGGTTTT
1 AACTTCAAAGATTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGG-TTC
* **
152569339 G-AGATTTCAA-ATCACAACCTTCA
65 GCCGATTT-AAGATTGCAACCTTCA
* * * *
152569362 AACTTCAAAGATTTTCAAAATCTTAAAGCTAGCGATTTAAGATCGTGACAT-CCTTTTAAGGTTC
1 AACTTCAAAGATTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGAC-TCCCCTTTAAGGTTC
* *
152569426 GTCGATTTAAGATTGCAACCTTTA
65 GCCGATTTAAGATTGCAACCTTCA
* * * * * *
152569450 ACCTTCAAATATTTTCAGAATCTTAG-GACTAGTGATTTAAAATCGCGACTGCCTTTTAAGGTTC
1 AACTTCAAAGATTTTCAGAATCTTAGAG-CTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTC
** *
152569514 GCTTATTTAAGATTGCAACCTTTA
65 GCCGATTTAAGATTGCAACCTTCA
* * * * * ** * **
152569538 AACTTCAAAGATTTTAAGAATATTAGAGCTAGCTATTTAAGATCGTGGCTCTTCTTTATGGTTTT
1 AACTTCAAAGATTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTCG
** *
152569603 CTAATTTAAGATTGTAACCTTCA
66 CCGATTTAAGATTGCAACCTTCA
* * * * *
152569626 AACTTCAAAGATTTTCAAAACCATAGAGTTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTTG
1 AACTTCAAAGATTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTCG
**
152569691 CCGATTTAAGATCACAACCTTCA
66 CCGATTTAAGATTGCAACCTTCA
*
152569714 AACTTCAAAGATTTTTAGAATCTTAG
1 AACTTCAAAGATTTTCAGAATCTTAG
152569740 TGTTAGTAAT
Statistics
Matches: 381, Mismatches: 76, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
87 7 0.02
88 368 0.97
89 6 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (88 bp):
AACTTCAAAGATTTTCAGAATCTTAGAGCTAGCGATTTAAGATCGCGACTCCCCTTTAAGGTTCG
CCGATTTAAGATTGCAACCTTCA
Found at i:152579053 original size:42 final size:42
Alignment explanation
Indices: 152578996--152579156 Score: 169
Period size: 42 Copynumber: 3.8 Consensus size: 42
152578986 TAAGGTTATG
* * *
152578996 TGTGATTTCGTGTAAGACCATATTTGGGATATGACATTGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
152579038 TGTGATTTTGTGTAAGACCATGTCTGGGACATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* ** * * *
152579080 TGAGACATCGTGTAAGACTATAGCTGGGCTATCGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATA
** * *
152579123 TGTGATCCCATGTAAGACCATATTTGGGATATGG
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGG
152579157 AATTGGCATC
Statistics
Matches: 94, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 61 0.65
43 33 0.35
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:152581279 original size:46 final size:46
Alignment explanation
Indices: 152581229--152581404 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
152581219 ATGGTTGGCA
152581229 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
152581275 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
152581322 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
152581368 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
152581405 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:152581341 original size:93 final size:93
Alignment explanation
Indices: 152581225--152581396 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
152581215 TAGGATGGTT
* *
152581225 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
152581290 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
152581318 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
152581383 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
152581397 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:152584323 original size:15 final size:15
Alignment explanation
Indices: 152584303--152584371 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
152584293 GTATCTTGGG
152584303 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
152584318 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
152584333 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
152584348 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
152584363 TTTCTTTAT
1 TTTCTTTAT
152584372 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:152584372 original size:30 final size:30
Alignment explanation
Indices: 152584294--152584381 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
152584284 CATAGTATCG
* * * *
152584294 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
152584324 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
152584354 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
152584382 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:152586795 original size:46 final size:46
Alignment explanation
Indices: 152586739--152586919 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
152586729 CTGGATGGTT
152586739 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
152586785 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
152586831 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
152586878 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
152586920 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:152586900 original size:93 final size:93
Alignment explanation
Indices: 152586741--152586911 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
152586731 GGATGGTTGA
* *
152586741 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
152586806 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
152586834 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
152586899 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
152586912 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:152594053 original size:40 final size:40
Alignment explanation
Indices: 152594004--152594155 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
152593994 ACAACCACAA
* * *** *
152594004 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
152594044 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
152594084 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * * * *
152594124 ACATAAATGCCTTTGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
152594156 CATTCAAATG
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 90 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:152601931 original size:40 final size:40
Alignment explanation
Indices: 152601824--152601991 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
152601814 TGGGATTTAA
* * * * * *
152601824 CCGGATACAACCACAAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
152601864 CCGGATTTGGTAACTTGCACCATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
152601904 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
152601944 CCGGACATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
152601984 CCGGATAT
1 CCGGATAT
152601992 CATTCAAATG
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:152609035 original size:25 final size:25
Alignment explanation
Indices: 152609007--152609057 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
152608997 CAAGCCCAAG
152609007 TATCAAATCGAAAAATTAAAAACAT
1 TATCAAATCGAAAAATTAAAAACAT
152609032 TATCAAATCGAAAAATTAAAAACAT
1 TATCAAATCGAAAAATTAAAAACAT
152609057 T
1 T
152609058 CTCGAGAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.59, C:0.12, G:0.04, T:0.25
Consensus pattern (25 bp):
TATCAAATCGAAAAATTAAAAACAT
Found at i:152612022 original size:42 final size:44
Alignment explanation
Indices: 152611964--152612054 Score: 107
Period size: 42 Copynumber: 2.1 Consensus size: 44
152611954 CATCGACTTA
* *
152611964 TGATTTACTTGTAAGACAATGTCTT-GGACATTGGAATC-ATATT
1 TGATTTACGTGTAAGACAATGT-TTGGGACAGTGGAATCAATATT
** *
152612007 TGATTT-CGTGTAAGACCCTGTTTGGGACAGTGGCATCAATATT
1 TGATTTACGTGTAAGACAATGTTTGGGACAGTGGAATCAATATT
152612050 TGATT
1 TGATT
152612055 ACATGTAGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.05
42 23 0.56
43 16 0.39
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.38
Consensus pattern (44 bp):
TGATTTACGTGTAAGACAATGTTTGGGACAGTGGAATCAATATT
Found at i:152612075 original size:42 final size:42
Alignment explanation
Indices: 152611968--152612075 Score: 103
Period size: 42 Copynumber: 2.6 Consensus size: 42
152611958 GACTTATGAT
* ** * *
152611968 TTACTTGTAAGACAATGTCTTGGACATTGGAATCATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGGAATCATATTTGA
* * * *
152612010 TTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCAATATTTGA
1 TTACATGTAAGACCCTGTCTGGGACAGTGGAATC-ATATTTGA
152612053 TTACATGT-AGACCAC-GTCTGGGA
1 TTACATGTAAGACC-CTGTCTGGGA
152612076 TGTCAGCATT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 38 0.72
43 15 0.28
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
TTACATGTAAGACCCTGTCTGGGACAGTGGAATCATATTTGA
Found at i:152630717 original size:28 final size:29
Alignment explanation
Indices: 152630684--152630749 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
152630674 TTTATAATTA
152630684 TTTAATTAGATAATTAT-TTA-TTTAATAT
1 TTTAATTAGAT-ATTATATTATTTTAATAT
* * *
152630712 TTTAATAAGATATTTTATTATTTTATTAT
1 TTTAATTAGATATTATATTATTTTAATAT
*
152630741 TTTATTTAG
1 TTTAATTAG
152630750 TCTATATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 4 0.13
28 13 0.42
29 14 0.45
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (29 bp):
TTTAATTAGATATTATATTATTTTAATAT
Found at i:152630733 original size:8 final size:8
Alignment explanation
Indices: 152630722--152630746 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
152630712 TTTAATAAGA
152630722 TATTTTAT
1 TATTTTAT
152630730 TATTTTAT
1 TATTTTAT
152630738 TATTTTAT
1 TATTTTAT
152630746 T
1 T
152630747 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:152633129 original size:6 final size:6
Alignment explanation
Indices: 152633090--152633155 Score: 59
Period size: 6 Copynumber: 11.3 Consensus size: 6
152633080 TATGTTGTTG
* **
152633090 GAAAGT GAAATTT GAAA-T G-AATT GTTATT G-AATT GAAATT GAAATT
1 GAAATT GAAA-TT GAAATT GAAATT GAAATT GAAATT GAAATT GAAATT
152633136 GAAATT GAAA-T GTAAATT GA
1 GAAATT GAAATT G-AAATT GA
152633156 TTGGAAAAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
4 2 0.04
5 10 0.20
6 32 0.63
7 7 0.14
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (6 bp):
GAAATT
Done.