Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 493 of 770
Found at i:152633491 original size:28 final size:30
Alignment explanation
Indices: 152633451--152633519 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 30
152633441 TGTGCTAATT
*
152633451 TGGTGTGTTTGGGAGGA-CTATG-TGATTC
1 TGGTGTGTTTGGGAGGATATATGATGATTC
*
152633479 TGGTGTGTTTGGGAGGATTATATGATTATTC
1 TGGTGTGTTTGGGAGGA-TATATGATGATTC
152633510 TGGTGTGTTT
1 TGGTGTGTTT
152633520 TGGTTGGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 17 0.47
30 4 0.11
31 15 0.42
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.45
Consensus pattern (30 bp):
TGGTGTGTTTGGGAGGATATATGATGATTC
Found at i:152633786 original size:29 final size:27
Alignment explanation
Indices: 152633744--152633797 Score: 90
Period size: 29 Copynumber: 1.9 Consensus size: 27
152633734 CACTATGTGC
152633744 TATACTGGTTTGTTTTGGATGGATTATAT
1 TATACTGGTTTG-TTTGGA-GGATTATAT
152633773 TATACTGGTTTGTTTGGAGGATTAT
1 TATACTGGTTTGTTTGGAGGATTAT
152633798 CTAATCACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 7 0.28
28 6 0.24
29 12 0.48
ACGTcount: A:0.20, C:0.04, G:0.26, T:0.50
Consensus pattern (27 bp):
TATACTGGTTTGTTTGGAGGATTATAT
Found at i:152633813 original size:27 final size:28
Alignment explanation
Indices: 152633745--152633824 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
152633735 ACTATGTGCT
* *
152633745 ATACTGGTTTGTTTTGGATGGATTATATT
1 ATACTGGTGTGTTTTGGA-GGATTATATA
* *
152633774 ATACTGGTTTG-TTTGGAGGATTATCTA
1 ATACTGGTGTGTTTTGGAGGATTATATA
*
152633801 ATCAC-GGTGTGTTTTAGAGGATTA
1 AT-ACTGGTGTGTTTTGGAGGATTA
152633825 CATGATTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
27 15 0.33
28 19 0.42
29 11 0.24
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (28 bp):
ATACTGGTGTGTTTTGGAGGATTATATA
Found at i:152633858 original size:26 final size:24
Alignment explanation
Indices: 152633831--152633876 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
152633821 ATTACATGAT
152633831 TATT-CCAGTGTGTTTTGGTTGGG
1 TATTACCAGTGTGTTTTGGTTGGG
**
152633854 TATTACTGGTGTGTTTTGGTTGG
1 TATTACCAGTGTGTTTTGGTTGG
152633877 AATTCGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.09, C:0.07, G:0.35, T:0.50
Consensus pattern (24 bp):
TATTACCAGTGTGTTTTGGTTGGG
Found at i:152636010 original size:32 final size:29
Alignment explanation
Indices: 152635953--152636011 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
152635943 AGTAAATCTC
* *
152635953 AAAATTTGAGGATTAAAGTGTAAATATGA
1 AAAATTTGAGGACTAAAGTGCAAATATGA
152635982 AAAAGTTTGAAGGACTAATAGTGCAAATAT
1 AAAA-TTTG-AGGACTAA-AGTGCAAATAT
152636012 TTTAAGAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.16
30 4 0.16
31 7 0.28
32 10 0.40
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (29 bp):
AAAATTTGAGGACTAAAGTGCAAATATGA
Found at i:152639505 original size:28 final size:28
Alignment explanation
Indices: 152639473--152639541 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
152639463 GCGTAGATCA
152639473 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
152639501 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
152639529 CGATA-TACCCCTA
1 CGAAATTACCCCTA
152639542 GGTTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:152645823 original size:20 final size:20
Alignment explanation
Indices: 152645798--152645835 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
152645788 GTTTATTCGC
*
152645798 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
152645818 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
152645836 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:152647496 original size:28 final size:28
Alignment explanation
Indices: 152647464--152647532 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
152647454 GCGTAGATCA
152647464 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
152647492 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
152647520 CGATA-TACCCCTA
1 CGAAATTACCCCTA
152647533 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:152653943 original size:28 final size:28
Alignment explanation
Indices: 152653882--152653979 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
152653872 TCACAAATTG
** * *
152653882 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
152653911 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
152653939 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
152653967 GCACTAAGTGTGC
1 GCACTAAGTGTGC
152653980 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:152656828 original size:15 final size:15
Alignment explanation
Indices: 152656808--152656838 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
152656798 TATAGGGACT
152656808 TAGTTTTATGATATA
1 TAGTTTTATGATATA
152656823 TAGTTTTATGATATA
1 TAGTTTTATGATATA
152656838 T
1 T
152656839 GCTATTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (15 bp):
TAGTTTTATGATATA
Found at i:152658479 original size:14 final size:14
Alignment explanation
Indices: 152658462--152658491 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
152658452 GAATTGAGTT
152658462 ATATGTATATAATG
1 ATATGTATATAATG
*
152658476 ATATGTATATGATG
1 ATATGTATATAATG
152658490 AT
1 AT
152658492 GTAACACCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (14 bp):
ATATGTATATAATG
Found at i:152661393 original size:40 final size:40
Alignment explanation
Indices: 152661266--152661395 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
152661256 TGCTGGAAAT
* *
152661266 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
152661306 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
152661346 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
152661386 TTATATCCGG
1 TTATATCCGG
152661396 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:152677210 original size:40 final size:40
Alignment explanation
Indices: 152677038--152677203 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
152677028 AACCCAAGTA
* *
152677038 CCTTCGGGATTTAG-CCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
*
152677077 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
152677117 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
152677157 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
152677197 CCTTCGG
1 CCTTCGG
152677204 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 13 0.11
40 105 0.89
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:152679355 original size:29 final size:29
Alignment explanation
Indices: 152679323--152679456 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
152679313 ATACCCTTCG
** * *
152679323 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
152679352 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
152679380 AGCAT-GCACACTTAGTGCC-TATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
152679408 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
152679437 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
152679457 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.03
28 42 0.45
29 48 0.52
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:152679387 original size:28 final size:28
Alignment explanation
Indices: 152679347--152679454 Score: 146
Period size: 28 Copynumber: 3.8 Consensus size: 28
152679337 GTGCCGTATT
** *
152679347 TTTCCAGCTTGCACACATAGTGTCATAT-
1 TTTCCAGCACGCACACTTAGTG-CATATA
* *
152679375 TTTCCAGCATGCACACTTAGTGCCTATA
1 TTTCCAGCACGCACACTTAGTGCATATA
152679403 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTG-CATATA
152679432 TTTCCAGCACGCACACTTAGTGC
1 TTTCCAGCACGCACACTTAGTGC
152679455 CAATCTCGTC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
27 4 0.05
28 42 0.58
29 27 0.37
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.31
Consensus pattern (28 bp):
TTTCCAGCACGCACACTTAGTGCATATA
Found at i:152679397 original size:57 final size:57
Alignment explanation
Indices: 152679327--152679455 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 57
152679317 CCTTCGAGCT
** * ** *
152679327 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATAT-TTTCCAGCA
1 CGCACACTTAGTGCC-TATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* *
152679384 TGCACACTTAGTGCCTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
152679441 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
152679456 AATCTCGTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 27 0.44
57 35 0.56
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.29
Consensus pattern (57 bp):
CGCACACTTAGTGCCTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:152686262 original size:16 final size:17
Alignment explanation
Indices: 152686243--152686276 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
152686233 TTCAATTTCA
152686243 TAATT-TACTCACTATT
1 TAATTCTACTCACTATT
*
152686259 TAATTCTACTTACTATT
1 TAATTCTACTCACTATT
152686276 T
1 T
152686277 TTAGTGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATTCTACTCACTATT
Found at i:152689712 original size:24 final size:24
Alignment explanation
Indices: 152689682--152689948 Score: 471
Period size: 24 Copynumber: 11.1 Consensus size: 24
152689672 GAATGTGACT
* *
152689682 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
152689706 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689730 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689754 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
152689778 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
152689802 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689826 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
152689850 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
152689874 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689898 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689922 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
152689946 ATA
1 ATA
152689949 TGGTCTTTGC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 237 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:152696652 original size:40 final size:40
Alignment explanation
Indices: 152696607--152696736 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
152696597 CGGAATACAA
152696607 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
152696647 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
152696687 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
152696727 CCGGATATAA
1 CCGGATATAA
152696737 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:152696751 original size:40 final size:40
Alignment explanation
Indices: 152696607--152696770 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
152696597 CGGAATACAA
* **
152696607 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
152696647 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
152696687 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
152696727 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
152696767 CCGG
1 CCGG
152696771 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:152699449 original size:30 final size:30
Alignment explanation
Indices: 152699413--152699472 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
152699403 ATAATGAAAA
152699413 ATGTGGGTTGCCATAAGAGAGAAAAATGTT
1 ATGTGGGTTGCCATAAGAGAGAAAAATGTT
152699443 ATGTGGGTTGCCATAAGAGAGAAAAATGTT
1 ATGTGGGTTGCCATAAGAGAGAAAAATGTT
152699473 CTTTTAGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.30, T:0.27
Consensus pattern (30 bp):
ATGTGGGTTGCCATAAGAGAGAAAAATGTT
Found at i:152710470 original size:25 final size:25
Alignment explanation
Indices: 152710423--152710470 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
152710413 TTATATTTAA
*
152710423 TTTAATTTAATATTAAGATAATAAT
1 TTTAATTTAATATTAAGAAAATAAT
*
152710448 TTTAATATTAA-ATTAATAAAATA
1 TTTAAT-TTAATATTAAGAAAATA
152710471 CTATTAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATAAT
Found at i:152710520 original size:74 final size:74
Alignment explanation
Indices: 152710374--152710521 Score: 199
Period size: 74 Copynumber: 2.0 Consensus size: 74
152710364 ACTTATTCAC
* * * *
152710374 TTTAATATTAAATTAATATAATACTTATCAAGATAAATATTATATTTAATTTAATTTAATATTAA
1 TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATTTAAAACTAA
*
152710439 GATAATAAT
66 GAAAATAAT
* *
152710448 TTTAATATTAAATTAATAAAATAC-TATTAAGATAAGTATTAAATTTAATTTAATATTAAAACTA
1 TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAAT-TTAAAACTA
**
152710512 TTAAAATAAT
65 AGAAAATAAT
152710522 ATTATTTTTG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 27 0.42
74 37 0.58
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (74 bp):
TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATTTAAAACTAA
GAAAATAAT
Found at i:152710523 original size:68 final size:72
Alignment explanation
Indices: 152710376--152710525 Score: 175
Period size: 68 Copynumber: 2.1 Consensus size: 72
152710366 TTATTCACTT
* *
152710376 TAATATTAAATTAATATAATACTTATCAAGATAAATATTATATTTAATTTAATTTAATATTAAGA
1 TAATATTAAATTAATAAAATACTTATCAAGATAAATATTATA--TAATTTAATTTAATATTAAAA
**
152710441 TAATAATTT
64 TAATAATAA
* *
152710450 TAATATTAAATTAATAAAATAC-TATTAAGATAAGTA-T-TA-AATTTAATTTAATATTAAAACT
1 TAATATTAAATTAATAAAATACTTATCAAGATAAATATTATATAATTTAATTTAATATTAAAA-T
*
152710511 ATTAA-AA
65 AATAATAA
152710518 TAATATTA
1 TAATATTA
152710526 TTTTTGGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
68 27 0.40
69 5 0.07
71 2 0.03
72 1 0.01
73 12 0.18
74 21 0.31
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (72 bp):
TAATATTAAATTAATAAAATACTTATCAAGATAAATATTATATAATTTAATTTAATATTAAAATA
ATAATAA
Found at i:152710568 original size:20 final size:20
Alignment explanation
Indices: 152710543--152710581 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
152710533 AATAGTTAAT
*
152710543 CTAAAATTAAATTATCTAGC
1 CTAAAATCAAATTATCTAGC
152710563 CTAAAATCAAATTATCTAG
1 CTAAAATCAAATTATCTAG
152710582 TAGAGTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (20 bp):
CTAAAATCAAATTATCTAGC
Found at i:152710883 original size:13 final size:13
Alignment explanation
Indices: 152710865--152710904 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
152710855 CAATTTTCGA
152710865 TTTCAAGTCCAAT
1 TTTCAAGTCCAAT
152710878 TTTCAAGTCCAAT
1 TTTCAAGTCCAAT
*
152710891 TTTCAAGTTCAAT
1 TTTCAAGTCCAAT
152710904 T
1 T
152710905 ACCCATTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (13 bp):
TTTCAAGTCCAAT
Found at i:152715932 original size:30 final size:27
Alignment explanation
Indices: 152715872--152715932 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 27
152715862 GATTTTTGAC
* *
152715872 GAAAATGTCAAATTAGGATTAAATTGT
1 GAAAATGTAAAATTAGGATTAAAGTGT
*
152715899 GAAAATGTAAAATTATGTGGTTAAAAGTGT
1 GAAAATGTAAAATTA-G-GATT-AAAGTGT
152715929 GAAA
1 GAAA
152715933 TAATGAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 14 0.50
28 1 0.04
29 3 0.11
30 10 0.36
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.31
Consensus pattern (27 bp):
GAAAATGTAAAATTAGGATTAAAGTGT
Found at i:152716533 original size:22 final size:22
Alignment explanation
Indices: 152716491--152716578 Score: 83
Period size: 22 Copynumber: 3.9 Consensus size: 22
152716481 TTTAGCTCAT
152716491 TAGAGCTTACCAT-TTCAGCTCG-
1 TAGAGCTTA-C-TGTTCAGCTCGA
* *
152716513 TATGAGCTTA-TTTATCAGCTCAA
1 TA-GAGCTTACTGT-TCAGCTCGA
152716536 TAGAGCTTACTGTTCAGCTCGA
1 TAGAGCTTACTGTTCAGCTCGA
*
152716558 TAGAGCTTACCGTTTCAGCTC
1 TAGAGCTTACTG-TTCAGCTC
152716579 ATTAGATCAG
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 35 0.62
23 19 0.34
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (22 bp):
TAGAGCTTACTGTTCAGCTCGA
Found at i:152716576 original size:45 final size:44
Alignment explanation
Indices: 152716443--152716584 Score: 137
Period size: 45 Copynumber: 3.0 Consensus size: 44
152716433 CTCATCGTAC
*
152716443 GAGCTTACCGATATATCAGCTCGTAAGAGCTTACTATTTTTAGCTCATTA
1 GAGCTTACC-AT-T-TCAGCTCGT-AGAGCTTAC--TTTTCAGCTCATTA
*
152716493 GAGCTTACCATTTCAGCTCGTATGAGCTTA-TTTATCAGCTCAATA
1 GAGCTTACCATTTCAGCTCGTA-GAGCTTACTTT-TCAGCTCATTA
*
152716538 GAGCTTA-C-TGTTCAGCTCGATAGAGCTTACCGTTTCAGCTCATTA
1 GAGCTTACCAT-TTCAGCTCG-TAGAGCTTA-CTTTTCAGCTCATTA
152716583 GA
1 GA
152716585 TCAGCTCAGG
Statistics
Matches: 82, Mismatches: 4, Indels: 17
0.80 0.04 0.17
Matches are distributed among these distances:
43 1 0.01
44 20 0.24
45 30 0.37
46 3 0.04
47 16 0.20
48 1 0.01
49 2 0.02
50 9 0.11
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (44 bp):
GAGCTTACCATTTCAGCTCGTAGAGCTTACTTTTCAGCTCATTA
Found at i:152719618 original size:93 final size:93
Alignment explanation
Indices: 152719506--152719677 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
152719496 GCCCATAAGT
* *
152719506 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
152719571 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
152719599 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
152719664 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
152719678 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:152719673 original size:46 final size:46
Alignment explanation
Indices: 152719498--152719673 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
152719488 TGTAACCCGC
* * *
152719498 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
152719544 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
152719594 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
152719637 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
152719674 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:152722101 original size:30 final size:30
Alignment explanation
Indices: 152722057--152722145 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
152722047 CAAAGATAAC
152722057 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
152722086 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
152722116 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
152722146 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:152722105 original size:15 final size:15
Alignment explanation
Indices: 152722057--152722136 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
152722047 CAAAGATAAC
*
152722057 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
152722071 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
152722086 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
152722101 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
152722116 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
152722131 AAGAAA
1 AAGAAA
152722137 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:152722145 original size:15 final size:15
Alignment explanation
Indices: 152722068--152722145 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
152722058 AGAAAACCGA
152722068 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
152722083 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
152722097 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
152722112 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
152722128 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
152722143 ATA
1 ATA
152722146 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:152725208 original size:93 final size:93
Alignment explanation
Indices: 152725096--152725267 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
152725086 GCCCATAAGT
* *
152725096 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
152725161 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
152725189 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
152725254 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
152725268 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:152725263 original size:46 final size:46
Alignment explanation
Indices: 152725088--152725263 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
152725078 TGTAACCCGC
* * *
152725088 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
152725134 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
152725184 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
152725227 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
152725264 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:152727025 original size:24 final size:25
Alignment explanation
Indices: 152726997--152727051 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
152726987 CAATTTCCAC
*
152726997 ATCAATCACATATATC-CATAT-AA
1 ATCAATCAAATATATCACATATCAA
*
152727020 ATTCAAT-AAATTTATCACATATCAA
1 A-TCAATCAAATATATCACATATCAA
152727045 ATCAATC
1 ATCAATC
152727052 CATTTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 8 0.31
24 15 0.58
25 3 0.12
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (25 bp):
ATCAATCAAATATATCACATATCAA
Found at i:152728936 original size:40 final size:40
Alignment explanation
Indices: 152728869--152729020 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
152728859 AAATTGAATG
* * * *
152728869 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
152728909 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
152728949 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
152728989 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
152729021 ACATGCTTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:152729034 original size:40 final size:39
Alignment explanation
Indices: 152728907--152729036 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
152728897 ATGCTGGAAA
* * *
152728907 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
152728948 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
152728986 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
152729027 TTATATCCGG
1 TTATATCCGG
152729037 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:152730672 original size:12 final size:11
Alignment explanation
Indices: 152730632--152730672 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
152730622 TTAATATTTA
152730632 AATTTCTTATTC
1 AATTTC-TATTC
152730644 AATTTCTATTC
1 AATTTCTATTC
*
152730655 AATTTCTACTTT
1 AATTTCTA-TTC
152730667 AATTTC
1 AATTTC
152730673 AATTTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:152744124 original size:40 final size:40
Alignment explanation
Indices: 152744079--152744245 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
152744069 CGGAATATAA
152744079 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
152744119 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
152744159 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
152744199 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
152744238 CCGGATAT
1 CCGGATAT
152744246 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:152753338 original size:56 final size:56
Alignment explanation
Indices: 152753271--152753383 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
152753261 AATACCGAGG
152753271 TTATTTTTAAAAAATCTAAAACATTCGTATGTTCAGATTTATCGAGAAAATTGAAA
1 TTATTTTTAAAAAATCTAAAACATTCGTATGTTCAGATTTATCGAGAAAATTGAAA
*
152753327 TTATTTTTAAAAAATCTAAAACATTCTTATGTTCAGATTTATCGAGAAAATTGAAA
1 TTATTTTTAAAAAATCTAAAACATTCGTATGTTCAGATTTATCGAGAAAATTGAAA
152753383 T
1 T
152753384 CTCGTAAGTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (56 bp):
TTATTTTTAAAAAATCTAAAACATTCGTATGTTCAGATTTATCGAGAAAATTGAAA
Found at i:152753671 original size:12 final size:12
Alignment explanation
Indices: 152753647--152753706 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
152753637 TTAAAAAGTT
152753647 TAAACAAATAAA
1 TAAACAAATAAA
152753659 TAAA-AAATGAAA
1 TAAACAAAT-AAA
*
152753671 TAAGCAAATAAA
1 TAAACAAATAAA
**
152753683 TAAGTAAATAAA
1 TAAACAAATAAA
*
152753695 -AAATAAA-AAA
1 TAAACAAATAAA
152753705 TA
1 TA
152753707 TAATAAAATG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
10 3 0.07
11 11 0.26
12 24 0.57
13 4 0.10
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.18
Consensus pattern (12 bp):
TAAACAAATAAA
Found at i:152753700 original size:19 final size:19
Alignment explanation
Indices: 152753656--152753714 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
152753646 TTAAACAAAT
*
152753656 AAATAAAAAATGA-AATAAGC
1 AAATAAAAAAT-ATAATAA-A
*
152753676 AAATAAATAAGTA-AATAAA
1 AAATAAA-AAATATAATAAA
152753695 AAATAAAAAATATAATAAA
1 AAATAAAAAATATAATAAA
152753714 A
1 A
152753715 TGACAATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 4 0.12
19 14 0.41
20 13 0.38
21 3 0.09
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.19
Consensus pattern (19 bp):
AAATAAAAAATATAATAAA
Found at i:152753725 original size:3 final size:3
Alignment explanation
Indices: 152753706--152753977 Score: 286
Period size: 3 Copynumber: 90.3 Consensus size: 3
152753696 AATAAAAAAT
* * *
152753706 ATA ATA A-A ATG ACA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
152753753 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
152753801 A-A ATA ATA GTA ATA ATA ATG ATA ATAA ATA ATA GTA GCA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA --ATA ATA ATA
** * * *
152753847 ATA ATA ATA ATA GGA ATA ATA ATG ATA ATAA ATA ATA GTA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
* * * *
152753893 ATAA ATA AT- ATA ATA ATA ATA GTA ATA ATA ATA GTC ATA ATA GTA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
152753938 ATG ATA ATA A-A TATA AGTA ATA GTA A-A ATA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA A-TA ATA ATA ATA ATA ATA ATA ATA A
152753978 ATAAACTAAT
Statistics
Matches: 222, Mismatches: 34, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
2 10 0.05
3 198 0.89
4 14 0.06
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:152755705 original size:177 final size:176
Alignment explanation
Indices: 152755493--152755948 Score: 528
Period size: 177 Copynumber: 2.6 Consensus size: 176
152755483 GAGATTCGCT
* * * * * *
152755493 ATCTTCAGCCTGCTCCAC-TGCTACCCTAAGGAGATAAAGCTGGTGGTTTAAATCTGCTCCCTTG
1 ATCTTCAGCCTGCTCC-CTTGCTACCCTAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCTTG
*
152755557 CTACCTCAGGAAGATAAGATTCGCCGCTTTCGATCTGCCCCACTGCTAACTCGAGGAGACAAAAT
65 CTACCTCGGGAAGATAAGATTCGCC-CTTTCGATCTGCCCCACTGCTAACTCGAGGAGACAAAAT
*
152755622 CT-AAATCATCAG-TGTGCTCC-CT-TACTACCTCAGGAAGATAAGGCTACA
129 CTGAAATCATCAGCT-TGCTCCACTGT--T-CCTCAGGAAGACAAGGCTACA
*
152755670 ATCTTCAGCCTGCTCCCTTGCTACCCTAGGGAGATAAGGCTAGTGCCTAAAATCTACTCCCTTGC
1 ATCTTCAGCCTGCTCCCTTGCTACCCTAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCTTGC
* * * * ** * ** *
152755735 TACCTCGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCATTGCTACCTCTTGTAGATGAGATC
66 TACCTCGGGAAGATAAGATTCGCCCT-TTCGATCTGCCCCACTGCTAACTCGAGGAGACAAAATC
* * * * *
152755800 TGCAATCTTCAGCTTGCTCCACTGTTGCTCAGGGAGACAAGGCTACT
130 TGAAATCATCAGCTTGCTCCACTGTTCCTCAGGAAGACAAGGCTACA
** *
152755847 GGCTTCAGCCTGCTCCCTTGCTA-CCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTG
1 ATCTTCAGCCTGCTCCCTTGCTACCCT-AGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCTTG
* *
152755911 CTACCTCGGGAAGATAAGATTCACCACTTTCGACCTGC
65 CTACCTCGGGAAGATAAGATTCGCC-CTTTCGATCTGC
152755949 TACACTACTG
Statistics
Matches: 240, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
176 5 0.02
177 215 0.90
178 16 0.07
179 3 0.01
180 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (176 bp):
ATCTTCAGCCTGCTCCCTTGCTACCCTAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCTTGC
TACCTCGGGAAGATAAGATTCGCCCTTTCGATCTGCCCCACTGCTAACTCGAGGAGACAAAATCT
GAAATCATCAGCTTGCTCCACTGTTCCTCAGGAAGACAAGGCTACA
Found at i:152755886 original size:44 final size:44
Alignment explanation
Indices: 152755636--152755888 Score: 147
Period size: 44 Copynumber: 5.7 Consensus size: 44
152755626 ATCATCAGTG
* * *
152755636 TGCTCCCTTACTACCTCAGGAAGATAAGGCTACAATCTTCAGCC
1 TGCTCCCTTGCTACCTCAGGGAGATAAGGCTACTATCTTCAGCC
* ** ** **
152755680 TGCTCCCTTGCTACC-CTAGGGAGATAAGGCTAGTGCCTAAAATC
1 TGCTCCCTTGCTACCTC-AGGGAGATAAGGCTACTATCTTCAGCC
* ** * * *
152755724 TACTCCCTTGCTACCTC-GGGAAGATAAGATTCGCCATCTTC-GATC
1 TGCTCCCTTGCTACCTCAGGG-AGATAAGGCT-ACTATCTTCAG-CC
* ** * * * * * *
152755769 TGCTCCATTGCTACCTCTTGTAGATGAGATCTGCAATCTTCAGCT
1 TGCTCCCTTGCTACCTCAGGGAGATAAG-GCTACTATCTTCAGCC
** * **
152755814 TGCTCCAC-TG-TTGCTCAGGGAGACAAGGCTACTGGCTTCAGCC
1 TGCTCC-CTTGCTACCTCAGGGAGATAAGGCTACTATCTTCAGCC
152755857 TGCTCCCTTGCTACCTCAGGGAGATAAGGCTA
1 TGCTCCCTTGCTACCTCAGGGAGATAAGGCTA
152755889 GTGGCTAAAA
Statistics
Matches: 150, Mismatches: 48, Indels: 22
0.68 0.22 0.10
Matches are distributed among these distances:
42 1 0.01
43 22 0.15
44 82 0.55
45 42 0.28
46 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
TGCTCCCTTGCTACCTCAGGGAGATAAGGCTACTATCTTCAGCC
Found at i:152756010 original size:44 final size:45
Alignment explanation
Indices: 152755646--152756195 Score: 143
Period size: 44 Copynumber: 12.4 Consensus size: 45
152755636 TGCTCCCTTA
* * * *
152755646 CTACCTCAGGAAGATAAG-GCTACAATCTTCAGCCTGCTCC-CTTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCAC-TG
* ** * ** * *
152755690 CTACC-CTAGGGAGATAAG-GCTAGTGCCTAAAATCTACTCC-CTTG
1 CTACCTC-AGGGAGATAAGATCTACAGTCTTCAACCTGCTCCAC-TG
** * * *
152755734 CTACCTC-GGGAAGATAAGATTCGCCA-TCTTCGATCTGCTCCATTG
1 CTACCTCAGGG-AGATAAGA-TCTACAGTCTTCAACCTGCTCCACTG
** * * * * * *
152755779 CTACCTCTTGTAGATGAGATCTGCAATCTTCAGCTTGCTCCACTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
** * * * * *
152755824 -TTGCTCAGGGAGACAAG-GCTACTGGCTTCAGCCTGCTCC-CTTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCAC-TG
* ** * ** * * *
152755867 CTACCTCAGGGAGATAAG-GCTAGTGGCTAAAATCTACTCCCCTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
* * * *
152755911 CTACCTC-GGGAAGATAAGAT-TCACCACT-TTCGACCTGCTACACTA
1 CTACCTCAGGG-AGATAAGATCT-A-CAGTCTTCAACCTGCTCCACTG
* *
152755956 CT-GCTTAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
* ** * * * * *
152756000 CTA-CTCAGGGAG-TCAAG-GCTAGTGGCTTAAATCTACTCCATTG
1 CTACCTCAGGGAGAT-AAGATCTACAGTCTTCAACCTGCTCCACTG
* * * * ** * * * *
152756043 CTACCTCAGGCAGATAAGATTTGCCGTCTTTGATCTACTCTAGTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
* * * * *
152756088 CTACCTCATGGATATAAGATCTGCAATCTTCAACCTGCTCCACTA
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
* * * * ** * * *
152756133 CT-GCTCAAGGAGACAAG-GCTAGTGGCTTAAATCTGCTCC-CTTG
1 CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCAC-TG
152756176 CTACCTCAGGGAGATAAGAT
1 CTACCTCAGGGAGATAAGAT
152756196 TCGCCATTTT
Statistics
Matches: 358, Mismatches: 122, Indels: 51
0.67 0.23 0.10
Matches are distributed among these distances:
42 2 0.01
43 67 0.19
44 178 0.50
45 109 0.30
46 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (45 bp):
CTACCTCAGGGAGATAAGATCTACAGTCTTCAACCTGCTCCACTG
Found at i:152756223 original size:133 final size:129
Alignment explanation
Indices: 152755849--152756224 Score: 416
Period size: 133 Copynumber: 2.8 Consensus size: 129
152755839 AGGCTACTGG
* * * * *
152755849 CTTCAGCCTGCTCC-CTTGCTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCT
1 CTTCAACCTGCTCCAC-TACTA-CTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCT
* *
152755913 ACCTC-GGGAAGATAAGATTCACCACTTTCGACCTGCTACACTACTGCT-TAGGGAGATAAGATC
64 ACCTCAGGG-AGATAAGATTCGCCA-TTTTGA--T-CTACACTACTGCTATAGGGAGATAAGATC
*
152755976 TACAGT
124 TACAAT
* * *
152755982 CTTCAACCTGCTCCACTGCTACTCAGGGAGTCAAGGCTAGTGGCTTAAATCTACTCCATTGCTAC
1 CTTCAACCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTAC
* * * * * * * *
152756047 CTCAGGCAGATAAGATTTGCCGTCTTTGATCTACTCTAGTGCTACCTCATGGATATAAGATCTGC
66 CTCAGGGAGATAAGATTCGCCAT-TTTGATCTACACTACTGCTA--T-AGGGAGATAAGATCTAC
152756112 AAT
127 AAT
* * *
152756115 CTTCAACCTGCTCCACTACTGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTAC
1 CTTCAACCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTAC
*
152756180 CTCAGGGAGATAAGATTCGCCATTTTAGATCTACCCTACTGCTAT
66 CTCAGGGAGATAAGATTCGCCATTTT-GATCTACACTACTGCTAT
152756225 CTCGAGGTGA
Statistics
Matches: 207, Mismatches: 28, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
129 11 0.05
130 1 0.00
131 2 0.01
132 62 0.30
133 130 0.63
134 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (129 bp):
CTTCAACCTGCTCCACTACTACTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTAC
CTCAGGGAGATAAGATTCGCCATTTTGATCTACACTACTGCTATAGGGAGATAAGATCTACAAT
Found at i:152756471 original size:42 final size:44
Alignment explanation
Indices: 152756424--152756511 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 44
152756414 AGATTGCAAT
*
152756424 CTTCAGCCTACTCTCC-TACTGT-TCA-GGAGACAAGGCTAGTGG
1 CTTCAGCCTACTC-CCTTACTATCTCAGGGAGACAAGGCTAGTGG
* * *
152756466 CTTCAGCCTGCTCCCTTACTATCTCAGGGAGATATGGCTAGTGG
1 CTTCAGCCTACTCCCTTACTATCTCAGGGAGACAAGGCTAGTGG
152756510 CT
1 CT
152756512 AAAATCTGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
41 2 0.05
42 17 0.44
43 3 0.08
44 17 0.44
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTCAGCCTACTCCCTTACTATCTCAGGGAGACAAGGCTAGTGG
Found at i:152756516 original size:175 final size:176
Alignment explanation
Indices: 152756316--152756677 Score: 426
Period size: 175 Copynumber: 2.1 Consensus size: 176
152756306 TTGCAACCCT
* * * *
152756316 AGGGAGATAAGGCTAGTGGCTAAAATCTACTTCCTTGCTACCTCAGGAAGATAAGATTTGCCGTT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCAGGAAGATAAGATTCGCCGCT
* * * * * *
152756381 TTTGATCTGCTCCATTGCTACCTTATGGAGATAAGAT-TGCAATCTTCAGCCTA-CTCTC-CTAC
66 TTCGATCTACTCCACTACT-CCTTAGGGAGATAAGATCTACAATCTTCAGCC-AGCTC-CACTAC
* *
152756443 TGTTCA-GGAGACAAGGCTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
128 TGCTCAGGGAGACAAGACTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
* * * * *
152756491 AGGGAGATATGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAGGATAATATTCGCCGCT
1 AGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCAGGAAGATAAGATTCGCCGCT
* * *
152756556 TTCGATCTACTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTGCTGC
66 TTCGATCTACTCCACTACTCCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTACTGC
* ** * * *
152756621 TCAGGGAGACAAGACTAGTGGCTTAAATCTTCTCCCTTGCTACCTC
131 TCAGGGAGACAAGACTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
*
152756667 AGGAAGATAAG
1 AGGGAGATAAG
152756678 ATTCGCCATC
Statistics
Matches: 155, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
174 17 0.11
175 94 0.61
176 44 0.28
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (176 bp):
AGGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCAGGAAGATAAGATTCGCCGCT
TTCGATCTACTCCACTACTCCTTAGGGAGATAAGATCTACAATCTTCAGCCAGCTCCACTACTGC
TCAGGGAGACAAGACTAGTGGCTTCAGCCTGCTCCCTTACTATCTC
Found at i:152763364 original size:21 final size:21
Alignment explanation
Indices: 152763308--152763393 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
152763298 TTAAAAAGTT
*
152763308 TAAACAAATAAAAA-AATGAAA
1 TAAATAAATAAAAATAAT-AAA
**
152763329 TAAGCAAAT--AAATAAGTAAA
1 TAAATAAATAAAAATAA-TAAA
152763349 TAAA-AAATAAAAATAA-AAA
1 TAAATAAATAAAAATAATAAA
*
152763368 TATAATAAATAATAATAATAATA
1 TA-AATAAATAAAAATAATAA-A
152763391 TAA
1 TAA
152763394 TAGGAAACAA
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
19 12 0.22
20 10 0.19
21 26 0.48
22 3 0.06
23 3 0.06
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.22
Consensus pattern (21 bp):
TAAATAAATAAAAATAATAAA
Found at i:152763381 original size:3 final size:3
Alignment explanation
Indices: 152763354--152763550 Score: 126
Period size: 3 Copynumber: 66.7 Consensus size: 3
152763344 GTAAATAAAA
* * **
152763354 AAT AAA AAT AAA AAT -AT AAT AAAT AAT AAT AAT AAT -AT AAT AGG
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
** * * *
152763398 AA- ACA- AAT AAT TGT AAT AAT AAT GAT AAT AAAT AAT AGT AGT AAAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT
*
152763444 AAT AAT AAT AAT AAT AGA- AAT AAT AAT GAT AA- AA- AAT AA- AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
152763486 AAT AAT AAT AGT AAT AAT AAT AGT AAT GAT AAT AA- ATAT AAGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT
**
152763532 GGT AA- AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
152763551 CTAAACTAAT
Statistics
Matches: 152, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
2 16 0.11
3 123 0.81
4 13 0.09
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:152768133 original size:19 final size:19
Alignment explanation
Indices: 152768109--152768199 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
152768099 ATAATCTTCA
*
152768109 ATGATATGCAATTTTAGAT
1 ATGATATGCAATCTTAGAT
* *
152768128 ATGATATGAAATATTAGAT
1 ATGATATGCAATCTTAGAT
152768147 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
152768164 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
152768182 ATGATATGCAAGCTTAGA
1 ATGATATGCAATCTTAGA
152768200 AGATATGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 14 0.22
18 16 0.25
19 34 0.53
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:152768163 original size:36 final size:35
Alignment explanation
Indices: 152768117--152768187 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
152768107 CAATGATATG
*
152768117 CAATTTTAGATATGATATGAAATATTAGATATGATA
1 CAATCTTAGATATGAT-TGAAATATTAGATATGATA
* *
152768153 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGAAATATTAGATATGATA
152768188 TGCAAGCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 17 0.53
36 15 0.47
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (35 bp):
CAATCTTAGATATGATTGAAATATTAGATATGATA
Found at i:152769327 original size:27 final size:27
Alignment explanation
Indices: 152769251--152769339 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
152769241 TTTAGTTTAC
* *
152769251 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
152769278 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
152769305 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
152769332 TAAAATTA
1 TAAAATTA
152769340 ACAAAGTACC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:152769365 original size:27 final size:27
Alignment explanation
Indices: 152769335--152769393 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
152769325 CGACTTGTAA
152769335 AATTAACAAAGTACCCCCGATTTACAG
1 AATTAACAAAGTACCCCCGATTTACAG
* **** *
152769362 AATTATCGTTTTACCCCCGATTTACAT
1 AATTAACAAAGTACCCCCGATTTACAG
152769389 AATTA
1 AATTA
152769394 CCGTTTTACC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTAACAAAGTACCCCCGATTTACAG
Found at i:152769398 original size:27 final size:27
Alignment explanation
Indices: 152769346--152769556 Score: 262
Period size: 27 Copynumber: 7.8 Consensus size: 27
152769336 ATTAACAAAG
* *
152769346 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
152769373 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
152769400 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
152769427 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
152769454 TAACCTCAATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
152769481 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
152769508 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
152769535 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
152769557 TAAAATACCC
Statistics
Matches: 162, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 160 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:152769582 original size:81 final size:81
Alignment explanation
Indices: 152769424--152769583 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
152769414 ATAATTATCG
* *** *
152769424 TTTTACCCTCGACTTACAGAATTACCGTTTTAACCTCAATTTACAGAATTACAGTTTTACCCTCG
1 TTTTACCCTCGACTTACAGAATTACCGTTTTAACCTCAATTTACAAAATTACAGAAATACCCTAG
*
152769489 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * * * *
152769505 TTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA-AAATACCCTT
1 TTTTACCCTCGACTTACAGAATTACCGTTTTAACCTCAATTTACAAAATTAC-AGAAATACCC-T
*
152769569 AG-TTTGTAAAATTAC
64 AGATTTATAAAATTAC
152769584 CAAAATACCC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 62 0.95
82 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACCGTTTTAACCTCAATTTACAAAATTACAGAAATACCCTAG
ATTTATAAAATTACTA
Found at i:152769593 original size:54 final size:54
Alignment explanation
Indices: 152769535--152769674 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 54
152769525 ATTACTGTTT
* **
152769535 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * *
152769589 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAG
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
152769643 TACCCTCAATTTGTAAAATTACCT-AAATACCC
1 TACCCTCAATTTGTAAAATTA-CTAAAATACCC
152769675 CTGATTTACA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
53 2 0.03
54 68 0.94
55 1 0.01
56 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:152769761 original size:27 final size:27
Alignment explanation
Indices: 152769508--152769764 Score: 133
Period size: 27 Copynumber: 9.4 Consensus size: 27
152769498 ATTACTATTT
* * * ***
152769508 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGGTTTATAAAATTACTGAAA
* * * *
152769535 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACTGAAA
* * **
152769562 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACTGAAA
* * * *
152769589 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTATAAAATTACT-GAAA
* * * *
152769616 TACCCTTGGTTTGTGAAATTACCGAAG
1 TACCCTTGGTTTATAAAATTACTGAAA
*** *
152769643 TACCCTCAATTTGTAAAATTACCT-AAA
1 TACCCTTGGTTTATAAAATTA-CTGAAA
* * * * *
152769670 TACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTTGGTTTATAAAATTACTGAAA
* *
152769697 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACT-GAAA
* *
152769726 TACCATTGGTTTAAAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACTGAAA
152769753 TACCCTTGGTTT
1 TACCCTTGGTTT
152769765 GTAGATTTAC
Statistics
Matches: 178, Mismatches: 44, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
26 1 0.01
27 152 0.85
28 8 0.04
29 17 0.10
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACTGAAA
Found at i:152769882 original size:27 final size:27
Alignment explanation
Indices: 152769805--152769882 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
152769795 AAATGACTAA
* *
152769805 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
152769832 -ATAGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
152769859 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
152769883 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 36 0.86
28 3 0.07
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:152771073 original size:25 final size:25
Alignment explanation
Indices: 152771044--152771091 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
152771034 TTATAATATG
* * *
152771044 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
152771069 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
152771092 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:152771153 original size:20 final size:20
Alignment explanation
Indices: 152771128--152771218 Score: 155
Period size: 20 Copynumber: 4.5 Consensus size: 20
152771118 ATTTTGATAA
152771128 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
152771148 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
152771168 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
152771188 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
*
152771208 ACATGAGATGT
1 ACATGACATGT
152771219 TCATAAATGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 67 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:152771155 original size:11 final size:11
Alignment explanation
Indices: 152771139--152771213 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
152771129 CATGACATGT
152771139 ATGATATGCAC
1 ATGATATGCAC
*
152771150 ATGATATG--T
1 ATGATATGCAC
152771159 ATGATATGCAC
1 ATGATATGCAC
* *
152771170 ATGACATG--T
1 ATGATATGCAC
152771179 ATGATATGCAC
1 ATGATATGCAC
*
152771190 ATGATATG--T
1 ATGATATGCAC
152771199 ATGATATGCAC
1 ATGATATGCAC
152771210 ATGA
1 ATGA
152771214 GATGTTCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:152771164 original size:9 final size:9
Alignment explanation
Indices: 152771130--152771206 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
152771120 TTTGATAAAC
*
152771130 ATGACATGT
1 ATGATATGT
*
152771139 ATGATATGCAC
1 ATGATATG--T
152771150 ATGATATGT
1 ATGATATGT
*
152771159 ATGATATGCAC
1 ATGATATG--T
*
152771170 ATGACATGT
1 ATGATATGT
*
152771179 ATGATATGCAC
1 ATGATATG--T
152771190 ATGATATGT
1 ATGATATGT
152771199 ATGATATG
1 ATGATATG
152771207 CACATGAGAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
9 30 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (9 bp):
ATGATATGT
Found at i:152771176 original size:40 final size:40
Alignment explanation
Indices: 152771128--152771218 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
152771118 ATTTTGATAA
152771128 ACATGACATGTATGATATGCACATGATATGTATGATATGC
1 ACATGACATGTATGATATGCACATGATATGTATGATATGC
152771168 ACATGACATGTATGATATGCACATGATATGTATGATATGC
1 ACATGACATGTATGATATGCACATGATATGTATGATATGC
*
152771208 ACATGAGATGT
1 ACATGACATGT
152771219 TCATAAATGC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (40 bp):
ACATGACATGTATGATATGCACATGATATGTATGATATGC
Found at i:152771321 original size:25 final size:25
Alignment explanation
Indices: 152771265--152771431 Score: 270
Period size: 25 Copynumber: 6.8 Consensus size: 25
152771255 AGGAAGTGCA
152771265 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
152771288 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
152771313 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
152771338 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
152771363 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
152771388 AAAGGGCTTATGCCCTAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
*
152771412 AAAGGG-TTTTGCCCCAGTTA
1 AAAGGGCTTATGCCCCAGTTA
152771432 CTAAAAGAGG
Statistics
Matches: 136, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
23 34 0.25
24 7 0.05
25 95 0.70
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:152771466 original size:75 final size:73
Alignment explanation
Indices: 152771264--152771457 Score: 268
Period size: 73 Copynumber: 2.6 Consensus size: 73
152771254 GAGGAAGTGC
*
152771264 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCC
152771329 AGTTATGA
66 AGTTATGA
* *
152771337 TAAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCC
1 AAAAGGGCTTATGCCCCAGTTAT-A-AAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCC
*
152771402 CTAGTTAT-A
64 CCAGTTATGA
* *
152771411 AAAAGGG-TTTTGCCCCAGTTACTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
152771458 ATGGTAAAGC
Statistics
Matches: 108, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
72 8 0.07
73 47 0.44
74 8 0.07
75 45 0.42
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (73 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCC
AGTTATGA
Found at i:152771706 original size:31 final size:31
Alignment explanation
Indices: 152771652--152771715 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
152771642 CGTTTACAGT
* *
152771652 AAAGGCTTCAGCCCAGTAATATGATATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
152771683 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
152771714 AA
1 AA
152771716 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:152772530 original size:17 final size:17
Alignment explanation
Indices: 152772508--152772542 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
152772498 TGTTTCCCTG
152772508 ATTTTTTTA-TATATTTT
1 ATTTTTTTAGTA-ATTTT
152772525 ATTTTTTTAGTAATTTT
1 ATTTTTTTAGTAATTTT
152772542 A
1 A
152772543 GTATCATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTTTTAGTAATTTT
Found at i:152776630 original size:46 final size:46
Alignment explanation
Indices: 152776578--152776891 Score: 439
Period size: 46 Copynumber: 6.8 Consensus size: 46
152776568 AGTGTGCTCT
* * *
152776578 CTGATATGGAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
152776624 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
152776670 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
152776716 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
152776762 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
152776808 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * *
152776855 ATGACAAAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATAC
152776892 TATGACATCA
Statistics
Matches: 248, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 206 0.83
47 42 0.17
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:152779002 original size:4 final size:4
Alignment explanation
Indices: 152778989--152779028 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
152778979 TATTTGGTAG
152778989 TAAA TAAAA TAAA T-AA -AAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
152779029 TTTGAATCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.76
5 4 0.12
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:152780564 original size:46 final size:46
Alignment explanation
Indices: 152780512--152780640 Score: 240
Period size: 46 Copynumber: 2.8 Consensus size: 46
152780502 AGTGTGCTTT
*
152780512 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
152780558 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
152780604 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
152780641 TGTAACACCC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:152782035 original size:40 final size:40
Alignment explanation
Indices: 152781990--152782154 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
152781980 CGGAATATAA
152781990 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
152782030 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
152782070 CCGG--ATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
152782108 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
152782147 CCGGATAT
1 CCGGATAT
152782155 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:152782111 original size:38 final size:37
Alignment explanation
Indices: 152782006--152782114 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
152781996 ATAATCACGT
* *
152782006 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT--AACAACTA
* *
152782046 GCACGAATGCCTTCGGGCCTTAGCCCGGATAACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAACAACTA
*
152782084 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
152782115 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.51
40 28 0.46
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAACAACTA
Found at i:152782138 original size:78 final size:77
Alignment explanation
Indices: 152782006--152782153 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
152781996 ATAATCACGT
*
152782006 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
152782071 CGGATAACCACTA
65 CGGATAACCACTA
* * ** * *
152782084 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
152782147 CCGGATA
64 CCGGATA
152782154 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAACCACTA
Found at i:152783001 original size:17 final size:19
Alignment explanation
Indices: 152782978--152783023 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
152782968 AAGAAGCATG
152782978 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
152782996 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
152783014 AATCATGCTC
1 AATCATGCTC
152783024 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:152790769 original size:27 final size:29
Alignment explanation
Indices: 152790739--152790853 Score: 92
Period size: 29 Copynumber: 4.0 Consensus size: 29
152790729 ACGCAAGAGC
*
152790739 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
152790766 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
**
152790795 ATATAACT-TTCAGCTCGCACACTTAGTGCT
1 ATAT-A-TGTGAAGCTCGCACACTTAGTGCT
* * ** *
152790825 ATATGTTTTTAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
152790854 GTACAATTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
27 5 0.07
28 4 0.05
29 39 0.51
30 27 0.36
31 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:152790808 original size:30 final size:29
Alignment explanation
Indices: 152790751--152790853 Score: 161
Period size: 29 Copynumber: 3.5 Consensus size: 29
152790741 ATAGTGAATC
152790751 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
152790780 CGCACACTTAGTGCTATATAACTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* * *
152790810 CGCACACTTAGTGCTATATGTTTTTAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
152790839 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
152790854 GTACAATTTT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
29 40 0.59
30 28 0.41
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:152790863 original size:29 final size:29
Alignment explanation
Indices: 152790751--152790883 Score: 151
Period size: 29 Copynumber: 4.5 Consensus size: 29
152790741 ATAGTGAATC
152790751 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTT-AGCT
*
152790780 CGCACACTTAGTGCTATATAACTTTCAGCT
1 CGCACACTTAGTGCTATATAA-TTTTAGCT
** *
152790810 CGCACACTTAGTGCTATATGTTTTTAGTT
1 CGCACACTTAGTGCTATATAATTTTAGCT
* * * *
152790839 CGCACACTTAGTGCTGTACAATTTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTTT-AGCT
152790870 CGCACACTTAGTGC
1 CGCACACTTAGTGC
152790884 CAATCTTGTC
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
29 42 0.48
30 28 0.32
31 18 0.20
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTTTAGCT
Found at i:152794869 original size:21 final size:21
Alignment explanation
Indices: 152794851--152794940 Score: 162
Period size: 21 Copynumber: 4.3 Consensus size: 21
152794841 AGCACGGGCA
152794851 TGTCCCAGGGTCACACGGGTG
1 TGTCCCAGGGTCACACGGGTG
*
152794872 TGTCCCAAGGTCACACGGGTG
1 TGTCCCAGGGTCACACGGGTG
152794893 TGTCCCAGGGTCACACGGGTG
1 TGTCCCAGGGTCACACGGGTG
*
152794914 TGTCCCAGGGTCACACGGGCG
1 TGTCCCAGGGTCACACGGGTG
152794935 TGTCCC
1 TGTCCC
152794941 TTGAACCACA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.19
Consensus pattern (21 bp):
TGTCCCAGGGTCACACGGGTG
Found at i:152796729 original size:37 final size:37
Alignment explanation
Indices: 152796667--152796766 Score: 103
Period size: 37 Copynumber: 2.7 Consensus size: 37
152796657 ACTCCCTGTT
* * * * *
152796667 TTGGCGTGTTTTCGATTAGACTAGCTATTT-GGAGCAA
1 TTGGCGTGTTATCGAGTGGATTAGCT-TTTCAGAGCAA
* * *
152796704 TTGGTGTGTTATCGGGTGGATTAGCTTTTCAGAGTAA
1 TTGGCGTGTTATCGAGTGGATTAGCTTTTCAGAGCAA
*
152796741 TTGGCGTGTTATCGAGTGGATGAGCT
1 TTGGCGTGTTATCGAGTGGATTAGCT
152796767 CTTATGAGCA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
36 3 0.06
37 48 0.94
ACGTcount: A:0.19, C:0.11, G:0.32, T:0.38
Consensus pattern (37 bp):
TTGGCGTGTTATCGAGTGGATTAGCTTTTCAGAGCAA
Found at i:152801385 original size:24 final size:24
Alignment explanation
Indices: 152801358--152801403 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
152801348 TATGTAGTGT
*
152801358 ATCATGGAGAGATATTA-GGAGAAA
1 ATCAAGGAGAGAT-TTATGGAGAAA
*
152801382 ATCAAGGAGTGATTTATGGAGA
1 ATCAAGGAGAGATTTATGGAGA
152801404 GATTTAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.41, C:0.04, G:0.30, T:0.24
Consensus pattern (24 bp):
ATCAAGGAGAGATTTATGGAGAAA
Found at i:152806120 original size:47 final size:48
Alignment explanation
Indices: 152806056--152806146 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 48
152806046 TGCAAACCAA
152806056 TGGTGGCTTGCCCACAAAGTGTT-TCAGTGGCAGTATATCTGCATATG
1 TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCATATG
** * *
152806103 TGGTGGCTTTTCCACAAAGTGTTATCAGTGGCAGTTTATTTGCA
1 TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCA
152806147 AATCAATGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 21 0.54
48 18 0.46
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (48 bp):
TGGTGGCTTGCCCACAAAGTGTTATCAGTGGCAGTATATCTGCATATG
Found at i:152806266 original size:17 final size:18
Alignment explanation
Indices: 152806236--152806270 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
152806226 GGGTAGGAAA
*
152806236 ATTTATAAAGTATGCATC
1 ATTTATAAAATATGCATC
152806254 ATTT-TAAAATATGCATC
1 ATTTATAAAATATGCATC
152806271 GACATGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (18 bp):
ATTTATAAAATATGCATC
Found at i:152810604 original size:26 final size:26
Alignment explanation
Indices: 152810569--152810649 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
152810559 TTTGCCACAT
* * * *
152810569 ATACTGTTACTCGCAGCTTTGCTGAG
1 ATACTATTACTAGTAGCTTTGCTGCG
*
152810595 ATACTATTACTGGTAGCTTTGCTGCG
1 ATACTATTACTAGTAGCTTTGCTGCG
* *
152810621 AAACTATTACTAGTAGCCTTGCTGCG
1 ATACTATTACTAGTAGCTTTGCTGCG
152810647 ATA
1 ATA
152810650 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (26 bp):
ATACTATTACTAGTAGCTTTGCTGCG
Found at i:152812171 original size:13 final size:13
Alignment explanation
Indices: 152812153--152812179 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
152812143 TTTGGATATA
152812153 GAAATTGTATGCG
1 GAAATTGTATGCG
152812166 GAAATTGTATGCG
1 GAAATTGTATGCG
152812179 G
1 G
152812180 GTGATATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (13 bp):
GAAATTGTATGCG
Found at i:152813137 original size:24 final size:23
Alignment explanation
Indices: 152813093--152813139 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
152813083 ATTACGTGAT
*
152813093 TATTCTGGTGTGTTTTAGTTGGA
1 TATTCTGGTGTGTTTGAGTTGGA
*
152813116 TATTACTGGTGTGTTTGGGTTGGA
1 TATT-CTGGTGTGTTTGAGTTGGA
152813140 ATCCGTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.13, C:0.04, G:0.34, T:0.49
Consensus pattern (23 bp):
TATTCTGGTGTGTTTGAGTTGGA
Found at i:152813467 original size:26 final size:25
Alignment explanation
Indices: 152813410--152813468 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
152813400 AAGTCTGAAA
**
152813410 AAGTGAAATTATGAATTGAAATGTG
1 AAGTGAAATTATGAATTGAAATAAG
*
152813435 AATTGAAATTGA-GATATTGAAATAAG
1 AAGTGAAATT-ATGA-ATTGAAATAAG
152813461 AAGTGAAA
1 AAGTGAAA
152813469 ATAGAATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (25 bp):
AAGTGAAATTATGAATTGAAATAAG
Found at i:152815561 original size:40 final size:40
Alignment explanation
Indices: 152815484--152815707 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
152815474 GCTACTCGTT
* * *
152815484 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
152815524 CAAATGCCTTCGGGACTTAACCCAGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
152815564 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
152815603 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
152815643 CAAATGCCTTC-AGATCTTAGTCCGGATATAGTCACTTAG-A
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
152815683 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
152815708 CATCATTCGA
Statistics
Matches: 157, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 52 0.33
40 101 0.64
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:152815701 original size:119 final size:119
Alignment explanation
Indices: 152815484--152815707 Score: 276
Period size: 119 Copynumber: 1.9 Consensus size: 119
152815474 GCTACTCGTT
* *
152815484 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCAGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCAG
* * * *
152815549 ATTTAGTGACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTCACTAGCACCAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * **
152815603 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTACAAATGCCTTC-AGATCTTAGTCC
1 CAAATGCCTTCAGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
*
152815666 GGATATAGTCACTTAG-A-CAAAGCCTTCGGGACTTAGCCCGGA
64 AGATATAGTCAC-TAGCACCAAAGCCTTCGGG-CTTAGCCCGGA
152815708 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
118 14 0.16
119 71 0.80
120 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCAGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCAG
ATATAGTCACTAGCACCAAAGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:152815706 original size:79 final size:79
Alignment explanation
Indices: 152815451--152815707 Score: 290
Period size: 79 Copynumber: 3.3 Consensus size: 79
152815441 GAATCACGTA
* * * * * *
152815451 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACAAATGCCTTCA-GACTTAGCCCGGATATA
152815514 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * * * * *
152815530 CCTTCGGGACTTAACCCAGATTTAGTGACTCGCACCAATGCCTTCGGGCTTAGCCCGGA-ATTAG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCAGACTTAGCCCGGATA-TAG
152815594 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
152815609 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCAGATCTTAGTCCGGATATAG
1 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCAGA-CTTAGCCCGGATATAG
* *
152815674 TCACTTAG-ACAAA-G
65 TAAC-TCGCACAAATG
*
152815688 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
152815708 CATCATTCGA
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 103 0.68
80 44 0.29
81 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCAGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:152818338 original size:14 final size:14
Alignment explanation
Indices: 152818319--152818347 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
152818309 GAAGTTCATG
152818319 ATCAAAAGAAAACA
1 ATCAAAAGAAAACA
152818333 ATCAAAAGAAAACA
1 ATCAAAAGAAAACA
152818347 A
1 A
152818348 GGAAATTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.14, G:0.07, T:0.07
Consensus pattern (14 bp):
ATCAAAAGAAAACA
Found at i:152818887 original size:29 final size:31
Alignment explanation
Indices: 152818839--152818902 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
152818829 TTTATAATTA
*
152818839 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
152818870 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
152818899 TTTA
1 TTTA
152818903 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:152818891 original size:8 final size:8
Alignment explanation
Indices: 152818880--152818904 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
152818870 TTTAATAAGA
152818880 TATTTTAT
1 TATTTTAT
152818888 TATTTTAT
1 TATTTTAT
152818896 TATTTTAT
1 TATTTTAT
152818904 T
1 T
152818905 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:152822446 original size:26 final size:26
Alignment explanation
Indices: 152822417--152822497 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
152822407 TTCGCCACAT
152822417 ATACTGTTACTGGCGGATTTGCTGAG
1 ATACTGTTACTGGCGGATTTGCTGAG
* *
152822443 ATACTGTTATTGGCGGATTTACTGAG
1 ATACTGTTACTGGCGGATTTGCTGAG
* * *
152822469 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCGGATTTGCTGAG
152822495 ATA
1 ATA
152822498 TTGGTGTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (26 bp):
ATACTGTTACTGGCGGATTTGCTGAG
Found at i:152823764 original size:26 final size:26
Alignment explanation
Indices: 152823735--152823788 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
152823725 AAACCGAGGC
152823735 ATAAAAATAATTTAAAATTTATTTTG
1 ATAAAAATAATTTAAAATTTATTTTG
152823761 ATAAAAATAATTTAAAATTTATTTTG
1 ATAAAAATAATTTAAAATTTATTTTG
152823787 AT
1 AT
152823789 GCCTATGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
ATAAAAATAATTTAAAATTTATTTTG
Found at i:152825458 original size:40 final size:40
Alignment explanation
Indices: 152825373--152825523 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
152825363 AATTGAATGA
* * * *
152825373 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
152825413 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
152825454 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
152825493 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
152825524 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:152825537 original size:40 final size:40
Alignment explanation
Indices: 152825410--152825539 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
152825400 ATGCTGGAAA
* * *
152825410 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
152825450 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
152825490 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
152825530 TTATATCCGG
1 TTATATCCGG
152825540 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:152825538 original size:80 final size:80
Alignment explanation
Indices: 152825372--152825539 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
152825362 AAATTGAATG
* *
152825372 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
152825437 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
152825452 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
152825515 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
152825532 ATATCCGG
1 ATATCCGG
152825540 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:152833436 original size:40 final size:40
Alignment explanation
Indices: 152833370--152833520 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
152833360 AAATTGAATG
* *
152833370 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
152833409 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
152833449 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
152833489 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
152833521 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:152833534 original size:40 final size:40
Alignment explanation
Indices: 152833407--152833536 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
152833397 ATGCTGGAAA
* * *
152833407 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
152833447 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
152833487 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
152833527 TTATATCCGG
1 TTATATCCGG
152833537 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:152833535 original size:80 final size:79
Alignment explanation
Indices: 152833370--152833536 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
152833360 AAATTGAATG
*
152833370 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
152833435 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
152833449 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
152833512 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
152833529 ATATCCGG
1 ATATCCGG
152833537 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:152843953 original size:46 final size:46
Alignment explanation
Indices: 152843886--152844060 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
152843876 TGTAACCCGC
* * *
152843886 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
152843932 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTACTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--GGC-A-TTCGCAT
* *
152843982 -C-TCA-CGAACTCGGACTCAACTCAACGAG-TCCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCT-CGGGCATTCGCAT
* *
152844025 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
152844061 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 59 0.56
47 26 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:152844022 original size:93 final size:93
Alignment explanation
Indices: 152843893--152844064 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
152843883 CGCCCATAAG
* * *
152843893 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
152843958 ACGAGCTCAGATGCCTACTTACATCTCA
66 ACGAGCTCAGATGCCTACTTACATCTCA
*
152843986 CGAACTCGGACTCAACTCAACGAG-TCCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCT-CGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
152844050 AACGAGTTCGGATGC
65 AACGAGCTCAGATGC
152844065 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTACTTACATCTCA
Found at i:152844080 original size:46 final size:44
Alignment explanation
Indices: 152843937--152844080 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 44
152843927 CGCATCCATA
* * *
152843937 AGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTACTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAAC---CATCT
* * * * *
152843984 CA-CGAACTCGGACTCAACTCAACGAGTCCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
152844030 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
152844076 AGTGA
1 AGTGA
152844081 CATGTCACTT
Statistics
Matches: 76, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 28 0.37
48 1 0.01
49 3 0.04
50 2 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:152845924 original size:40 final size:40
Alignment explanation
Indices: 152845799--152845950 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
152845789 TCGAATGATG
* *
152845799 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * * *
152845839 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
152845879 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * * *
152845920 -CCGGGCTATGTCTCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
152845951 TTGCTATATC
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
39 1 0.01
40 78 0.87
41 11 0.12
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:152853563 original size:16 final size:16
Alignment explanation
Indices: 152853544--152853574 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
152853534 CTTCTTCACT
152853544 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
152853560 TACTTACTTACTTAA
1 TACTCACTTACTTAA
152853575 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:152853580 original size:20 final size:20
Alignment explanation
Indices: 152853541--152853580 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
152853531 AAACTTCTTC
* *
152853541 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
152853561 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
152853581 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:152853895 original size:53 final size:54
Alignment explanation
Indices: 152853766--152854020 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
152853756 ACACGGGTAT
* * * * *
152853766 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
152853815 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
152853868 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
152853923 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
152853976 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
152854021 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:152853966 original size:108 final size:110
Alignment explanation
Indices: 152853813--152854010 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
152853803 ATCCTTTTGA
* *
152853813 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
152853876 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
* ** *
152853921 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
152853986 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
152854011 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGT
Found at i:152857649 original size:40 final size:40
Alignment explanation
Indices: 152857594--152857824 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
152857584 CGGATGATAA
* * * * **
152857594 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
152857634 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
152857674 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
152857714 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * *
152857754 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
152857794 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
152857825 AGCTATATCC
Statistics
Matches: 176, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 8 0.05
40 168 0.95
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:152865754 original size:40 final size:40
Alignment explanation
Indices: 152865699--152865929 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
152865689 CGGATGATAA
* * * * * **
152865699 CCGGGCTATGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
152865739 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
152865779 CCGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
152865819 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * * *
152865859 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
152865899 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
152865930 AGCTATATCC
Statistics
Matches: 174, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 8 0.05
40 166 0.95
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:152870216 original size:30 final size:30
Alignment explanation
Indices: 152870182--152870239 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
152870172 CCGAGCCTAG
152870182 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * *
152870212 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
152870240 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:152881546 original size:40 final size:40
Alignment explanation
Indices: 152881487--152881628 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
152881477 AAATTGAATG
* * *
152881487 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
152881527 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
152881567 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
152881607 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
152881629 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:152881629 original size:40 final size:39
Alignment explanation
Indices: 152881526--152881654 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
152881516 TGCTGGAAAT
* * *
152881526 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
152881566 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
152881606 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
152881646 TATATCCGG
1 TATATCCGG
152881655 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:152892842 original size:40 final size:40
Alignment explanation
Indices: 152892763--152892920 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
152892753 TTCGAATGAT
* * * *
152892763 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
152892803 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
152892843 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
152892883 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
152892921 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:152892941 original size:80 final size:80
Alignment explanation
Indices: 152892763--152892950 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
152892753 TTCGAATGAT
* *
152892763 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
152892828 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
152892843 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
152892904 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
152892924 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
152892951 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:152897019 original size:71 final size:69
Alignment explanation
Indices: 152896813--152897020 Score: 162
Period size: 71 Copynumber: 3.0 Consensus size: 69
152896803 TAGAAAAATG
* *
152896813 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTA-
1 AATTATATTCTTTTCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACTGAAATTAATTAT
152896877 ATAT
66 ATAT
* * * * * ** * * * * *
152896881 AATTGT-TTATATT-AATA-AATTTGGTAAAATATAT-ACAATTAATATTTTGTA-TG-AATCAA
1 AATTATATTCTTTTCAAAAGAATAT--TAATTTACATGTC-TTTTATATTTTG-ACTGAAAT-TA
152896940 ATTCATATATT
61 ATT-ATATA-T
*
152896951 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA-
1 AATTATATTCTTTTCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACTGAAATTAATTAT
152897015 ATAT
66 ATAT
152897019 AA
1 AA
152897021 CTTTTTATAT
Statistics
Matches: 99, Mismatches: 27, Indels: 28
0.64 0.18 0.18
Matches are distributed among these distances:
65 4 0.04
66 7 0.07
67 26 0.26
68 10 0.10
69 6 0.06
70 8 0.08
71 27 0.27
72 7 0.07
73 4 0.04
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.47
Consensus pattern (69 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACTGAAATTAATTAT
ATAT
Done.