Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 494 of 770
Found at i:152897061 original size:138 final size:138
Alignment explanation
Indices: 152896813--152897219 Score: 628
Period size: 138 Copynumber: 3.0 Consensus size: 138
152896803 TAGAAAAATG
* *
152896813 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
*
152896878 TATAA-TTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAACTT-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
152896942 TCATATATT
130 TCATATATT
152896951 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
152897016 TATAACTTTTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTT-TATGAATCAAATT
66 TATAACTTTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
152897079 CATATATT
131 CATATATT
* *
152897087 AATTATATTCTTTTC--AA-AATATTAATTTCTATGTCTTTTATATTTTGAC--------CTTAA
1 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
**
152897141 TATAACTGCTTATATTAATAAATTCGGTAAAATATATACAGA-TAATATTTTGTATGAATCAAAT
66 TATAACTTTTTATATTAATAAATTCGGTAAAATATATACA-ATTAATATTTTGTATGAATCAAAT
152897205 TCATATATT
130 TCATATATT
152897214 AATTAT
1 AATTAT
152897220 GTCTATGTTC
Statistics
Matches: 258, Mismatches: 7, Indels: 19
0.91 0.02 0.07
Matches are distributed among these distances:
125 47 0.18
126 4 0.02
127 27 0.10
133 31 0.12
134 2 0.01
136 36 0.14
137 3 0.01
138 106 0.41
139 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.47
Consensus pattern (138 bp):
AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAA
TATAACTTTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:152900259 original size:29 final size:29
Alignment explanation
Indices: 152900227--152900304 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
152900217 ATACCCTCCG
** * *
152900227 AGCTCGCACACCCAGTGCCGTATTTTTTC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
152900256 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
152900285 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
152900305 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:152908123 original size:28 final size:29
Alignment explanation
Indices: 152908083--152908155 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
152908073 CCTCCGAGCT
** * *
152908083 CGCACACCCAGTGCCGTAT-TTTTCAGCT
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* *
152908111 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
152908140 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
152908156 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:152912579 original size:6 final size:6
Alignment explanation
Indices: 152912564--152912601 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
152912554 CTATTGTGGC
152912564 AAAAAG -AAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
152912602 GTGATGGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:152920121 original size:27 final size:26
Alignment explanation
Indices: 152920073--152920132 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
152920063 GCGAGGCTGC
*
152920073 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
152920100 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
152920126 CAGATAT
1 CAGATAT
152920133 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:152920136 original size:2 final size:2
Alignment explanation
Indices: 152920129--152920164 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
152920119 ACCAGAACAG
152920129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
152920165 GTGTGGCGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:152920247 original size:27 final size:26
Alignment explanation
Indices: 152920199--152920250 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
152920189 GCGAGGCTGC
*
152920199 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
152920225 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
152920251 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:152921966 original size:45 final size:45
Alignment explanation
Indices: 152921900--152922067 Score: 185
Period size: 45 Copynumber: 3.8 Consensus size: 45
152921890 CTATGGTTGT
* *
152921900 ATTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCA
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTTCA
* * * *
152921945 ATTTAGTGTCATAACATCTTTCAACTATGGTCTTATTCA-TTTCA
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTTCA
* * **
152921989 GTTTAATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTGG
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTTCA
* ** * * *
152922034 GTAAAATGCCATGATATCTTTTAATTATGGTCTT
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTT
152922068 TGTCGTTTCT
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 38 0.37
45 64 0.63
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (45 bp):
ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTTCA
Found at i:152922010 original size:44 final size:44
Alignment explanation
Indices: 152921900--152922030 Score: 181
Period size: 44 Copynumber: 3.0 Consensus size: 44
152921890 CTATGGTTGT
* *
152921900 ATTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCA
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCA-TTTCA
* * * *
152921945 ATTTAGTGTCATAACATCTTTCAACTATGGTCTTATTCATTTCA
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTCA
* *
152921989 GTTTAATGCCATAGTATCTTTCAACTATGGTCTTACTCATTT
1 ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTT
152922031 TGGGTAAAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 41 0.55
45 33 0.45
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.44
Consensus pattern (44 bp):
ATTTAATGCCATAATATCTTTCAACTATGGTCTTACTCATTTCA
Found at i:152922053 original size:89 final size:89
Alignment explanation
Indices: 152921901--152922067 Score: 208
Period size: 89 Copynumber: 1.9 Consensus size: 89
152921891 TATGGTTGTA
** * *
152921901 TTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCAATTTAGTGTCATAACATCTTT
1 TTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCAATAAAATGCCATAACATCTTT
152921966 CAACTATGGTCTTATTCATTTCAG
66 CAACTATGGTCTTATTCATTTCAG
* * * *** * *
152921990 TTTAATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTGGGTAAAATGCCATGATATCTTT
1 TTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCAATAAAATGCCATAACATCTTT
* *
152922055 TAATTATGGTCTT
66 CAACTATGGTCTT
152922068 TGTCGTTTCT
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
89 64 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (89 bp):
TTTAATGCAATAATATCTTTCAACTATGGTCTTACACATTTTCAATAAAATGCCATAACATCTTT
CAACTATGGTCTTATTCATTTCAG
Found at i:152927215 original size:40 final size:39
Alignment explanation
Indices: 152927050--152927233 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
152927040 AAATTGAATG
* * *
152927050 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
152927090 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
152927130 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
152927170 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
152927209 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
152927234 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:152927258 original size:80 final size:81
Alignment explanation
Indices: 152927090--152927278 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
152927080 GCTGGAAATT
* * * *
152927090 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
152927155 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
152927171 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
152927234 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
152927250 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
152927279 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:152941712 original size:41 final size:41
Alignment explanation
Indices: 152941667--152941784 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
152941657 TGAAAGATAA
152941667 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
152941708 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152941738 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
152941779 ATGTAG
1 ATGTAG
152941785 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:152941723 original size:71 final size:71
Alignment explanation
Indices: 152941635--152941798 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
152941625 GAGATGTATC
152941635 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152941700 AGGACA
66 AGGACA
152941706 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
152941771 AGGACA
66 AGGACA
152941777 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
152941799 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:152944942 original size:26 final size:26
Alignment explanation
Indices: 152944911--152945018 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
152944901 TGAAATGTCC
*
152944911 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
152944937 ATCATGGAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
152944963 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
152944989 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
152945015 ATCA
1 ATCA
152945019 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:152949965 original size:40 final size:40
Alignment explanation
Indices: 152949906--152950113 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
152949896 CATTGGAATG
* * *
152949906 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
152949946 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
152949986 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
152950026 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
152950066 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
152950106 ATATCCGG
1 ATATCCGG
152950114 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:152951548 original size:40 final size:41
Alignment explanation
Indices: 152951471--152951550 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
152951461 GGTGTTACAA
*
152951471 ATATAGCCGAAGCTATCTCGATTTCGCACACTAAGTGCCAT
1 ATATAGACGAAGCTATCTCGATTTCGCACACTAAGTGCCAT
*
152951512 ATATAGACGAAGCTATGTCGA-TTCGCACACTAAGTGCCA
1 ATATAGACGAAGCTATCTCGATTTCGCACACTAAGTGCCA
152951551 CAAATAACCG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
40 18 0.49
41 19 0.51
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
ATATAGACGAAGCTATCTCGATTTCGCACACTAAGTGCCAT
Found at i:152953424 original size:22 final size:23
Alignment explanation
Indices: 152953383--152953430 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
152953373 GCAAAGACCG
152953383 AAATAGAAAACTGAAAAAAAACT
1 AAATAGAAAACTGAAAAAAAACT
*
152953406 AAATA-AAAA-TGAAAGAAAAATT
1 AAATAGAAAACTGAAA-AAAAACT
152953428 AAA
1 AAA
152953431 ACTAACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 5 0.22
22 13 0.57
23 5 0.22
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (23 bp):
AAATAGAAAACTGAAAAAAAACT
Found at i:152959377 original size:20 final size:20
Alignment explanation
Indices: 152959352--152959398 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
152959342 GTTTTGATAT
152959352 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
152959372 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
152959392 ACATGAT
1 ACATGAT
152959399 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:152959540 original size:24 final size:24
Alignment explanation
Indices: 152959446--152959553 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 24
152959436 AGGAAGTGCA
*
152959446 AAAAGGG-TTATGCCCCAGTTTACC
1 AAAAGGGCTT-TGCCCCAGTTTATC
*
152959470 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
152959496 AAAAGGGCCTTTGCCCCAGTTTATC
1 AAAAGGG-CTTTGCCCCAGTTTATC
* *
152959521 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
152959544 AAAAGAGGCT
1 AAAAG-GGCT
152959554 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 36 0.49
26 13 0.18
27 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:152959564 original size:49 final size:51
Alignment explanation
Indices: 152959457--152959565 Score: 136
Period size: 49 Copynumber: 2.2 Consensus size: 51
152959447 AAAGGGTTAT
**
152959457 GCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCCTTT
1 GCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCCTAG
* *
152959508 GCCCCAGTTTATC-AAAAGGGC-TTTGCCCTAG-TTATTAAAAGAGG-CTAG
1 GCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATTAAAAG-GGCCTAG
152959556 GCCTCCAGTT
1 GCC-CCAGTT
152959566 ATATGATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
48 15 0.29
49 17 0.33
50 8 0.15
51 12 0.23
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (51 bp):
GCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATTAAAAGGGCCTAG
Found at i:152978111 original size:40 final size:40
Alignment explanation
Indices: 152978003--152978212 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
152977993 CGGGATTTAA
* * * * *
152978003 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
152978043 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
152978083 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
152978123 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
152978163 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
152978203 CCGGATATAT
1 CCGGATATAT
152978213 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:152990581 original size:40 final size:41
Alignment explanation
Indices: 152990536--152990702 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
152990526 CGGAATATAA
*
152990536 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
152990576 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
152990616 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
152990656 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
152990695 CCGGATAT
1 CCGGATAT
152990703 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:152991550 original size:17 final size:19
Alignment explanation
Indices: 152991527--152991572 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
152991517 AAGAAGCATG
152991527 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
152991545 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
152991563 AATCATGCTC
1 AATCATGCTC
152991573 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:152995410 original size:42 final size:42
Alignment explanation
Indices: 152995301--152995440 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 42
152995291 ATATGTGAAA
* * ** *
152995301 TCATGTAAGACCACATCTGGGATGTTGGCATCGACTTATGATT
1 TCATGTAAGACCATATCTAGGACATTGGCATCGAATT-TGATT
*
152995344 TACATGTAAGACCATGTCTAGGACATTGGCATCGAATTTGATT
1 T-CATGTAAGACCATATCTAGGACATTGGCATCGAATTTGATT
* * * * * *
152995387 TCGTGTAAGACCTTATTTGGGACAGTGGCATCAATATTTGATT
1 TCATGTAAGACCATATCTAGGACATTGGCATCGA-ATTTGATT
*
152995430 ACATGTAAGAC
1 TCATGTAAGAC
152995441 TACGAGCTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 26 0.32
43 24 0.30
44 30 0.38
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
TCATGTAAGACCATATCTAGGACATTGGCATCGAATTTGATT
Found at i:153005113 original size:31 final size:31
Alignment explanation
Indices: 153005075--153005138 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
153005065 CCTTTTCATA
153005075 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
153005106 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
153005137 TT
1 TT
153005139 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:153005376 original size:24 final size:24
Alignment explanation
Indices: 153005330--153005448 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
153005320 GCTTTATCAT
*
153005330 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
153005355 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
153005379 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
153005402 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
153005426 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153005449 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:153005409 original size:47 final size:48
Alignment explanation
Indices: 153005330--153005448 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
153005320 GCTTTATCAT
*
153005330 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
153005379 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
153005426 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153005449 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:153005524 original size:20 final size:20
Alignment explanation
Indices: 153005499--153005558 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
153005489 TATGATTACC
153005499 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
153005519 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
153005539 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
153005559 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:153009221 original size:50 final size:50
Alignment explanation
Indices: 153009067--153009334 Score: 288
Period size: 50 Copynumber: 5.4 Consensus size: 50
153009057 CATAGCAGTT
* * *
153009067 TGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACATAGTAGCC
1 TGCACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
* * * * * * * * * *
153009116 TACACTTAGTACTACACACATGA-TTGAAGTTGTCGGGTACGCATAGTAGCT
1 TGCACTTAGTACTACACATACGACCT-AA-CTATCTGGTACACGTAGTAGCC
* *
153009167 TGCACTTAGTACTACACATACGACGTAACTATCTGGTACATGTAGTAGCC
1 TGCACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
*** * * * *
153009217 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTCGTAGCC
1 TGCACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
* *
153009267 TGCACTTACTACTACACATAGGACCTAACTATCTGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
153009317 TGCACTTAGTACTACACA
1 TGCACTTAGTACTACACA
153009335 CGTAACCTAA
Statistics
Matches: 177, Mismatches: 38, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
49 19 0.11
50 119 0.67
51 38 0.21
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TGCACTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCC
Found at i:153009280 original size:100 final size:100
Alignment explanation
Indices: 153009067--153009344 Score: 317
Period size: 100 Copynumber: 2.8 Consensus size: 100
153009057 CATAGCAGTT
* * * * *
153009067 TGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACATAGTAGCCTACACTTAGTACTAC
1 TGCACTTACTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC
* * * *** * * *** * *
153009131 ACACATGA-TTGAAGTTGTCGGGTACGCATAGTAGCT
66 ACACGTAACCT-AA-CCATCTGATACATGTCGTAGCC
* * *
153009167 TGCACTTAGTACTACACATACGACGTAACTATCTGGTACATGTAGTAGCCTGCACTTAGTACTAC
1 TGCACTTACTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC
*
153009232 ACACGTGACCTAACCATCTGATACATGTCGTAGCC
66 ACACGTAACCTAACCATCTGATACATGTCGTAGCC
*
153009267 TGCACTTACTACTACACATAGGACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC
1 TGCACTTACTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC
153009332 ACACGTAACCTAA
66 ACACGTAACCTAA
153009345 AACTATCCTG
Statistics
Matches: 153, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
100 108 0.71
101 44 0.29
102 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (100 bp):
TGCACTTACTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTAACCTAACCATCTGATACATGTCGTAGCC
Found at i:153011873 original size:24 final size:24
Alignment explanation
Indices: 153011822--153011963 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
153011812 GCTTTATCAT
*
153011822 ATAACTGGAGGC-TTAGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
153011847 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
153011871 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
153011894 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
153011918 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
153011941 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153011964 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 45 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:153011897 original size:23 final size:23
Alignment explanation
Indices: 153011843--153011962 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
153011833 CTTAGCCTCT
*
153011843 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
153011866 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
153011890 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
153011913 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
153011937 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
153011960 TTT
1 TTT
153011963 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:153011964 original size:47 final size:47
Alignment explanation
Indices: 153011843--153011964 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
153011833 CTTAGCCTCT
* *
153011843 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
153011890 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
153011937 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
153011965 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:153012035 original size:9 final size:9
Alignment explanation
Indices: 153012021--153012077 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
153012011 ATCTCATGTG
153012021 CATATCATA
1 CATATCATA
*
153012030 CATATCATGTG
1 CATATCA--TA
153012041 CATATCATA
1 CATATCATA
* *
153012050 CATGTCATGTG
1 CATATCA--TA
153012061 CATATCATA
1 CATATCATA
153012070 CATATCAT
1 CATATCAT
153012078 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:153012037 original size:20 final size:20
Alignment explanation
Indices: 153012009--153012079 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
153011999 GCATTTATGA
*
153012009 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
153012029 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
153012049 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
153012069 ACATATCATGT
1 ACATATCATGT
153012080 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:153012044 original size:11 final size:11
Alignment explanation
Indices: 153012014--153012068 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
153012004 TATGAACATC
153012014 TCATGTGCATA
1 TCATGTGCATA
*
153012025 TCA--TACATA
1 TCATGTGCATA
153012034 TCATGTGCATA
1 TCATGTGCATA
* *
153012045 TCA--TACATG
1 TCATGTGCATA
153012054 TCATGTGCATA
1 TCATGTGCATA
153012065 TCAT
1 TCAT
153012069 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:153019974 original size:24 final size:24
Alignment explanation
Indices: 153019923--153020111 Score: 287
Period size: 24 Copynumber: 8.0 Consensus size: 24
153019913 GCTTTATCAT
*
153019923 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
153019948 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
153019972 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
153019995 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
153020019 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
153020042 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
153020066 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
153020089 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153020112 GCACTTCCTC
Statistics
Matches: 151, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
23 66 0.44
24 73 0.48
25 12 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:153019998 original size:23 final size:23
Alignment explanation
Indices: 153019944--153020110 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
153019934 CCTAGCCTCT
*
153019944 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
153019967 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
153019991 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
153020014 TTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
153020038 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
153020061 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
153020085 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
153020108 TTT
1 TTT
153020111 TGCACTTCCT
Statistics
Matches: 134, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 69 0.51
24 65 0.49
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:153019998 original size:47 final size:47
Alignment explanation
Indices: 153019944--153020112 Score: 311
Period size: 47 Copynumber: 3.6 Consensus size: 47
153019934 CCTAGCCTCT
* *
153019944 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
153019991 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
153020038 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
153020085 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
153020113 CACTTCCTCC
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:153020183 original size:9 final size:9
Alignment explanation
Indices: 153020169--153020225 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
153020159 ATCTCATGTG
153020169 CATATCATA
1 CATATCATA
*
153020178 CATATCATGTG
1 CATATCA--TA
153020189 CATATCATA
1 CATATCATA
* *
153020198 CATGTCATGTG
1 CATATCA--TA
153020209 CATATCATA
1 CATATCATA
153020218 CATATCAT
1 CATATCAT
153020226 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:153020185 original size:20 final size:20
Alignment explanation
Indices: 153020157--153020227 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
153020147 GCATTTATGA
*
153020157 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
153020177 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
153020197 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
153020217 ACATATCATGT
1 ACATATCATGT
153020228 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:153020192 original size:11 final size:11
Alignment explanation
Indices: 153020162--153020216 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
153020152 TATGAACATC
153020162 TCATGTGCATA
1 TCATGTGCATA
*
153020173 TCA--TACATA
1 TCATGTGCATA
153020182 TCATGTGCATA
1 TCATGTGCATA
* *
153020193 TCA--TACATG
1 TCATGTGCATA
153020202 TCATGTGCATA
1 TCATGTGCATA
153020213 TCAT
1 TCAT
153020217 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:153020292 original size:25 final size:25
Alignment explanation
Indices: 153020264--153020311 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
153020254 ATATATAAAC
* * *
153020264 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
153020289 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
153020312 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:153024486 original size:124 final size:122
Alignment explanation
Indices: 153024266--153024487 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
153024256 GAATTATGTG
* * * *
153024266 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
153024331 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
153024388 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
153024452 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
153024488 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:153024531 original size:40 final size:40
Alignment explanation
Indices: 153024446--153024596 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
153024436 AATTGAATGA
* * * *
153024446 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
153024486 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
153024527 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
153024566 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
153024597 ACATGCTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:153024580 original size:80 final size:80
Alignment explanation
Indices: 153024447--153024596 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
153024437 ATTGAATGAT
* *
153024447 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
153024512 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
153024527 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
153024590 TTTGTGC
64 ATTGTGC
153024597 ACATGCTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:153033001 original size:131 final size:121
Alignment explanation
Indices: 153032797--153033066 Score: 342
Period size: 131 Copynumber: 2.1 Consensus size: 121
153032787 TCTCTGCAAT
* *
153032797 ACAGAGATACCAAATCTGCTATCTTCAATTGTTCCCTATAAACAGGGATGCCATGCTGAAATCCT
1 ACAGGGATGCCAAATCTGCTATCTTCAATTGTTCCCTATAAACAGGGATGCCATGCTGAAATCCT
* * * * *
153032862 TGATCTGCTTTGTTGTAAGCACAAGAGTGTCAGATCTGTTATCTTCGATCCGTTCCCTATAAAC
66 TGACCTGCTTCGCTGTAAGCAC---AG-G--A-ATCTGCTATCTTCGATCCGCT-CCTATAAAC
*
153032926 ACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAACACAGGGCTGCCATGCTGAAATC
1 ACAGGGATGCCAAATCTGCTATCTTCAA-TTGTTCCCTATAA-ACAGGGATGCCATGCTGAAATC
* * *
153032991 TTTGACCTGCTTCGCTGTAAGCACAGGAATCTGCTATCTTCGATCTGCTCCTCTAAAC
64 CTTGACCTGCTTCGCTGTAAGCACAGGAATCTGCTATCTTCGATCCGCTCCTATAAAC
*
153033049 ACAAGGATGCCAAATCTG
1 ACAGGGATGCCAAATCTG
153033067 ATTTTGGAAA
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
123 25 0.20
124 18 0.14
125 1 0.01
127 1 0.01
128 2 0.02
129 26 0.20
130 13 0.10
131 41 0.32
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (121 bp):
ACAGGGATGCCAAATCTGCTATCTTCAATTGTTCCCTATAAACAGGGATGCCATGCTGAAATCCT
TGACCTGCTTCGCTGTAAGCACAGGAATCTGCTATCTTCGATCCGCTCCTATAAAC
Found at i:153037318 original size:87 final size:87
Alignment explanation
Indices: 153037172--153037992 Score: 1179
Period size: 87 Copynumber: 9.4 Consensus size: 87
153037162 AATTCACAAT
* *
153037172 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTATAGATCTTACCACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCAGTAGG
153037237 GAAACAGATCGAAGGCGATGGG
66 GAAACAGATCGAAGGCGATGGG
* *
153037259 CCTTAAACCCCTAAGCAATAGGGTAACAGGCTGAATTTACAGATCTCACCACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCAGTAGG
*
153037324 GAAACAGATCAAAGGCGATGGG
66 GAAACAGATCGAAGGCGATGGG
153037346 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACC-CCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC-TAACCACCCTAAGCAGTAG
* *
153037410 GGAAATAGATCGAAGGTGATGGG
65 GGAAACAGATCGAAGGCGATGGG
* * *
153037433 -CTTCAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAAATTTTAACC-CTCTAAGCAGTA
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA-TCTAACCACCCTAAGCAGTA
*
153037496 GGGAAACAGATCGAAGGTGATGGG
64 GGGAAACAGATCGAAGGCGATGGG
* * *
153037520 -CTTCAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATTTTAACC-CCCTAACCAATC
1 CCTT-AAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA-TCTAACCACCCTAAGCAGT-
153037583 A-GGAAACAGATCGAAGGCGATGGG
63 AGGGAAACAGATCGAAGGCGATGGG
* * * *
153037607 CCTTGAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCAGTAGG
*
153037672 GAAACAGATCGAAGGCGATGGA
66 GAAACAGATCGAAGGCGATGGG
* *
153037694 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCAGTAGG
*
153037759 GAAACAGATCGAAGGTGATGGG
66 GAAACAGATCGAAGGCGATGGG
* * *
153037781 CCTTAAACCCGTACGCAGTAGGGTAATAGGCTGAATTTACAGATCTTAACC-CCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC-TAACCACCCTAAGCAGTAG
*
153037845 GGAAACAGATCGAAGGCGATGGA
65 GGAAACAGATCGAAGGCGATGGG
* * * *
153037868 CCTTAAACCCCTAGAGGATGGTGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGTA
1 CCTTAAACCCCTA-AGCA----GTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCA
* * *
153037933 GTAGGGAAACATATCGAAGGTGGTGGG
61 GTAGGGAAACAGATCGAAGGCGATGGG
*
153037960 CCTTAAACCCCTAAGCAGTAGGGTAATAGGCTG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG
153037993 GAAATTCACA
Statistics
Matches: 670, Mismatches: 50, Indels: 28
0.90 0.07 0.04
Matches are distributed among these distances:
86 8 0.01
87 571 0.85
88 14 0.02
91 6 0.01
92 71 0.11
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (87 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTAACCACCCTAAGCAGTAGG
GAAACAGATCGAAGGCGATGGG
Found at i:153038223 original size:45 final size:45
Alignment explanation
Indices: 153038045--153038251 Score: 164
Period size: 45 Copynumber: 4.5 Consensus size: 45
153038035 CTGGAAATTA
* * * *
153038045 CAAGTCTTATCTCCCTGAAGATGCAGTGGAGCAGATTAAAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACT-GAAGATAG
* * * * * * * *
153038091 CAAATCTTATTTCCCTGAAGTTGCAGTAGAACAAATTGAAGATATAAAT
1 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAG--AT--AG
* * * *
153038140 CATAGATCTCATATCTCTGAAGTTACAGTGGAGCAGACTGAAGATTG
1 CA-AG-TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAG
* * * *
153038187 CAAGTCTTATCTCCCTGAAGTTGCGGTGGGGTAGACTGAAGATAG
1 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAG
153038232 CAAGTCTTATCTCCCT-AAGT
1 CAAGTCTTATCTCCCTGAAGT
153038252 AGAGCAGAGC
Statistics
Matches: 128, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
44 4 0.03
45 52 0.41
46 33 0.26
47 4 0.03
49 5 0.04
50 1 0.01
51 29 0.23
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAG
Found at i:153038403 original size:88 final size:88
Alignment explanation
Indices: 153038265--153038622 Score: 509
Period size: 88 Copynumber: 4.1 Consensus size: 88
153038255 GCAGAGCAAT
* * *
153038265 AAATCTCTTCTCCCTGAAAATGGCACTGGAGAGGCTCGAAGCCACTATTCGTATCTCCTTGAAGT
1 AAATCTCTTCCCCCTG-AAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGT
* * *
153038330 TCCAACGGAGTAGATCGAAGCTAC
65 TCCAGCCGAGTAGATCAAAGCTAC
* *
153038354 AAATCTCTTCTCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCACCTTGAAGTT
1 AAATCTCTTCCCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGTT
** *
153038419 CCAGTAGATTAGATCAAAGCTAC
66 CCAGCCGAGTAGATCAAAGCTAC
* *
153038442 AAATATCTTCCCCCTGAAATGGGACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGTT
1 AAATCTCTTCCCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGTT
* **
153038507 TCAGCCGAGTAGATTGAAGCTAC
66 CCAGCCGAGTAGATCAAAGCTAC
* * *
153038530 AAATCTTTTCCCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTTGTATCTTCTTGAAGTT
1 AAATCTCTTCCCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGTT
* * *
153038595 CCATCCGATTAGATCAAAGCTAT
66 CCAGCCGAGTAGATCAAAGCTAC
153038618 AAATC
1 AAATC
153038623 ACAAACCTTA
Statistics
Matches: 240, Mismatches: 29, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
88 224 0.93
89 16 0.07
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (88 bp):
AAATCTCTTCCCCCTGAAATGGCACTGGAGAGGCTCAAAGCCACCATTCGTATCTCCTTGAAGTT
CCAGCCGAGTAGATCAAAGCTAC
Found at i:153040018 original size:3 final size:3
Alignment explanation
Indices: 153040010--153040487 Score: 180
Period size: 3 Copynumber: 159.3 Consensus size: 3
153040000 TAACTTGATG
*
153040010 TAT TAT TAT TAT TAT TATT TAT TAT AGAT ATAT TAT TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT -TAT -TAT TAT TAT TAT TA-T TAT
* * * * * * *
153040059 AGAT ATAT TAT TAT TAT TAC TAT TGT T-G TGT TAT TAT TAG TAT TAG
1 -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
153040105 TAT TAT TAT TGT TAC TAC TAG TAT TAT TTT TAT AAT TAT TGT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
153040152 TAC TAT TAC TA- CAT TAT TAT TAC TAT TAT TAT TAT TAT TAC TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
153040199 TAT TAT TAT TAC CAC TAC TAT TAT T-T TAT TAA CA- TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * **
153040245 T-T TTT TAC CA- TAT TAT TAT T-T CCTAT CTTT TAT ATAT TAT TAT TGC
1 TAT TAT TAT TAT TAT TAT TAT TAT --TAT -TAT TAT -TAT TAT TAT TAT
* * *
153040291 TAT TAA CAT ATAT TAT TAT TAT TATT TAC TAT TAT T-T TCACT T-T TAT
1 TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT T-A-T TAT TAT
* * * *
153040338 TAT TAT TAC TA- TAT TAT TAT TGT TAT TAT CAT T-T TCT ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
153040382 TAT TAA TAC TAA TAT TAAT T-T TCT TAT TAT TAC TAT TAT TAG TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
153040427 CA- TAGA TAT TAT T-T TTT TAT TAT T-T T-T TAT CAC TAT TCT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
153040469 TAT CAA TAT TTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
153040488 TCATTATCAT
Statistics
Matches: 356, Mismatches: 89, Indels: 60
0.70 0.18 0.12
Matches are distributed among these distances:
2 28 0.08
3 290 0.81
4 35 0.10
5 3 0.01
ACGTcount: A:0.31, C:0.07, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:153040246 original size:22 final size:22
Alignment explanation
Indices: 153040219--153040261 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
153040209 ACCACTACTA
153040219 TTATTTTATTAACATATTATTG
1 TTATTTTATTAACATATTATTG
* *
153040241 TTATTTTTTTACCATATTATT
1 TTATTTTATTAACATATTATT
153040262 ATTTCCTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATTTTATTAACATATTATTG
Found at i:153042552 original size:84 final size:87
Alignment explanation
Indices: 153042448--153042619 Score: 287
Period size: 84 Copynumber: 2.0 Consensus size: 87
153042438 CCATGCTTGC
*
153042448 TTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTGCTTGATT-C-AAAAG-TGCT
1 TTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTACTTGATTCCAAAAAGATGCT
153042510 TTGAAGGTGACCCAATTCCTGT
66 TTGAAGGTGACCCAATTCCTGT
153042532 TTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTACTTGATTCCAAAAAGCAAAT
1 TTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTACTTGATTCCAAAAAG---AT
153042597 GCTTTGAAGGTGACCCAATTCCT
63 GCTTTGAAGGTGACCCAATTCCT
153042620 TTGGATTTGA
Statistics
Matches: 81, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
84 51 0.63
85 1 0.01
86 5 0.06
90 24 0.30
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (87 bp):
TTTTGTCAATCTCAATGGAGTTTTGTTTAAGGATCAAATTTGTTACTTGATTCCAAAAAGATGCT
TTGAAGGTGACCCAATTCCTGT
Found at i:153046387 original size:210 final size:210
Alignment explanation
Indices: 153046020--153046425 Score: 562
Period size: 210 Copynumber: 1.9 Consensus size: 210
153046010 AAGACTGCTC
* * * * *** **
153046020 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGTCCCATCTAAATAAAGCTCTTGCAGGCA
1 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCACGTCCCATCAAAACAAACCTCCAACAAACA
* * * *
153046085 TTCCATTTTGCTATCAATCTCTGGAAACCTTTTAAGATTGGAACAACCTGAAAGAATTAACTTTT
66 TTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAACAACCTGAAAGAATTAACCTTT
* * **
153046150 CAAGAGATTCCATTCCAATTTTGGTTGGAAAACTCCTCAGACTTTTACAGTCTTTTAAATTCAAA
131 CAAGAGATTCCATTCCAATTCTGGTTGGAAAACTCCTCAGACTTTTACAGCCTCCTAAATTCAAA
153046215 ACTTCAAGTCTTCTG
196 ACTTCAAGTCTTCTG
* *
153046230 AGATTTCCAATTGAAGA-AGGTAGCTCTTTAATGTATGTCCCATCAAAACAAACCTCCAACAAAC
1 AGATTTCCAATTGAA-ATAGGTAGCTCTTTAATGCACGTCCCATCAAAACAAACCTCCAACAAAC
* * * * *
153046294 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGTTTTGAGCAACCTGAAAGAGTTAACCTT
65 ATTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAACAACCTGAAAGAATTAACCTT
* *
153046359 TCAAGGGATTCCATTCCAATTCTGGTTGGAAAACTCCTCAGACTTTTGCAGCCTCCTAAATTCAA
130 TCAAGAGATTCCATTCCAATTCTGGTTGGAAAACTCCTCAGACTTTTACAGCCTCCTAAATTCAA
153046424 AA
195 AA
153046426 GCTTAAGCCT
Statistics
Matches: 169, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
210 168 0.99
211 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (210 bp):
AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCACGTCCCATCAAAACAAACCTCCAACAAACA
TTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAACAACCTGAAAGAATTAACCTTT
CAAGAGATTCCATTCCAATTCTGGTTGGAAAACTCCTCAGACTTTTACAGCCTCCTAAATTCAAA
ACTTCAAGTCTTCTG
Found at i:153050332 original size:15 final size:16
Alignment explanation
Indices: 153050314--153050346 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
153050304 AATATATTTT
153050314 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
153050329 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
153050346 T
1 T
153050347 ATAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:153050419 original size:21 final size:22
Alignment explanation
Indices: 153050393--153050451 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
153050383 ATTTTAAGAA
*
153050393 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
153050414 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
153050436 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
153050452 AATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:153052260 original size:10 final size:10
Alignment explanation
Indices: 153052245--153052281 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
153052235 TTTTAGCATA
153052245 TATCTTTATT
1 TATCTTTATT
153052255 TATCTTTATT
1 TATCTTTATT
153052265 TAT-TTGTATT
1 TATCTT-TATT
153052275 TATCTTT
1 TATCTTT
153052282 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.70
Consensus pattern (10 bp):
TATCTTTATT
Found at i:153052822 original size:12 final size:12
Alignment explanation
Indices: 153052805--153052830 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
153052795 AAAATAGGGC
153052805 TTTAGCGGCGTT
1 TTTAGCGGCGTT
153052817 TTTAGCGGCGTT
1 TTTAGCGGCGTT
153052829 TT
1 TT
153052831 ACAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:153052956 original size:41 final size:41
Alignment explanation
Indices: 153052836--153053051 Score: 296
Period size: 41 Copynumber: 5.4 Consensus size: 41
153052826 GTTTTACAAA
* ** *
153052836 AAAACGCCGCTAAAAA-CAGAGCAACAGCGGCG-TTTT-TT
1 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
* * *
153052874 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTAGGT
1 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
*
153052914 AAAACGCCGCTAAAAACCAGGGCAGCAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
153052955 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
* * * *
153052996 AAAATGCCGCTAAAAACTAGGGCATTAGCGGCGCTTTTAGT
1 AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
153053037 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
153053052 GTCATATAAT
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 30 0.19
39 3 0.02
40 17 0.11
41 111 0.69
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGGGCAGTAGCGGCGCTTTTGGT
Found at i:153053231 original size:14 final size:14
Alignment explanation
Indices: 153053209--153053253 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
153053199 TTAATTATCA
*
153053209 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
153053223 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
153053237 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
153053251 TTA
1 TTA
153053254 AGCAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:153053282 original size:49 final size:46
Alignment explanation
Indices: 153053224--153053320 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
153053214 GTTTAAGGTT
* * *
153053224 TATGGTTTAAGATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATACGATTTAGGGTTT-A--AGGTTTAGGAGTTAAC
153053273 TATGGTTTAAGATATACGATTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATACGATTTAGGGTTTAAGGTTTAGGAGTTAAC
153053319 TA
1 TA
153053321 GTATTTGAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 17 0.38
48 1 0.02
49 27 0.60
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (46 bp):
TATGGTTTAAGATATACGATTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:153053878 original size:41 final size:40
Alignment explanation
Indices: 153053803--153053979 Score: 178
Period size: 41 Copynumber: 4.3 Consensus size: 40
153053793 GCAAAAATTG
* ** *
153053803 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTT-GGAAAAACGCCGC
* *
153053844 TAAAAACAGAGGAATAGCGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTT-G-GAAAAACGCCGC
* * * * *
153053885 GAAAAATAGAACATTAGCGGCGCTTTTGGAAAAGCGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
*
153053925 TAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
153053966 TAAAAACTAGAGCA
1 TAAAAAC-AGAGCA
153053980 TAAAAGTCAT
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
40 36 0.31
41 76 0.66
42 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGAAAAACGCCGC
Found at i:153053980 original size:41 final size:41
Alignment explanation
Indices: 153053833--153053980 Score: 185
Period size: 41 Copynumber: 3.6 Consensus size: 41
153053823 GCGTTTTACC
* * * *
153053833 AAAAACGCCACTAAAAAC-AGAGGAATAGCGGCG-TTTTAGTA
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTT-G-G
* *
153053874 AAAAACGCCGCGAAAAA-TAGAACATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGG
* *
153053914 AAAAGCGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGG
153053955 AAAAACGCCGCTAAAAACTAGAGCAT
1 AAAAACGCCGCTAAAAACTAGAGCAT
153053981 AAAAGTCATA
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 15 0.16
41 73 0.79
42 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGG
Found at i:153054151 original size:7 final size:7
Alignment explanation
Indices: 153054141--153054238 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
153054131 TTAATTATTA
*
153054141 TTATAGT
1 TTATGGT
153054148 TTATGGT
1 TTATGGT
153054155 TTATGGT
1 TTATGGT
* *
153054162 TTAAGAT
1 TTATGGT
*
153054169 ATATGGT
1 TTATGGT
*
153054176 TTAGGGT
1 TTATGGT
*
153054183 TTAAGGT
1 TTATGGT
*
153054190 TCATGAGT
1 TTATG-GT
153054198 TAACTATGGT
1 T---TATGGT
* *
153054208 TTAAGAT
1 TTATGGT
*
153054215 ATATGGT
1 TTATGGT
*
153054222 TTAGGGT
1 TTATGGT
*
153054229 TTAAGGT
1 TTATGGT
153054236 TTA
1 TTA
153054239 GGAGTTAACT
Statistics
Matches: 67, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
7 58 0.87
8 3 0.04
10 3 0.04
11 3 0.04
ACGTcount: A:0.27, C:0.02, G:0.26, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:153054173 original size:21 final size:21
Alignment explanation
Indices: 153054149--153054233 Score: 91
Period size: 21 Copynumber: 3.9 Consensus size: 21
153054139 TATTATAGTT
*
153054149 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
*
153054170 TATGGTTTAGGGTTTAAGGT-
1 TATGGTTTAGGGTTTAAGATA
*
153054190 TCATGAGTTAACTATGGTTTAAGATA
1 T-ATG-GTT---TAGGGTTTAAGATA
153054216 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
153054234 GTTTAGGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
20 1 0.02
21 31 0.58
22 3 0.06
24 3 0.06
25 14 0.26
26 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:153054223 original size:46 final size:46
Alignment explanation
Indices: 153054156--153054249 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
153054146 GTTTATGGTT
*
153054156 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTCATGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTCAGGAGTTAAC
*
153054202 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTCAGGAGTTAAC
153054248 TA
1 TA
153054250 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.03, G:0.27, T:0.41
Consensus pattern (46 bp):
TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTCAGGAGTTAAC
Found at i:153054359 original size:36 final size:37
Alignment explanation
Indices: 153054299--153054396 Score: 96
Period size: 36 Copynumber: 2.7 Consensus size: 37
153054289 ATGATTTAGT
*
153054299 GTTTAGGGGTT-AGGG-TTGGAGTTTAAG-GTGTAAGG
1 GTTT-GGGGTTAAGGGTTTAGAGTTTAAGTGTGTAAGG
* *
153054334 GTTTGGGGTTAAGGGTTTAGAGTTT-AGTGTTTATGG
1 GTTTGGGGTTAAGGGTTTAGAGTTTAAGTGTGTAAGG
* * *
153054370 GATAGGGGTTAAGAGGTTTAGGGTTTA
1 GTTTGGGGTTAAG-GGTTTAGAGTTTA
153054397 GATTAATTAG
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
34 6 0.12
35 10 0.19
36 25 0.48
37 11 0.21
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (37 bp):
GTTTGGGGTTAAGGGTTTAGAGTTTAAGTGTGTAAGG
Found at i:153054396 original size:7 final size:7
Alignment explanation
Indices: 153054276--153054397 Score: 61
Period size: 7 Copynumber: 17.1 Consensus size: 7
153054266 GATGAATTAT
153054276 GGGTTTA
1 GGGTTTA
*
153054283 GGGATTA
1 GGGTTTA
* *
153054290 TGATTTA
1 GGGTTTA
*
153054297 GTGTTTA
1 GGGTTTA
*
153054304 GGGGTTA
1 GGGTTTA
153054311 GGG-TT-
1 GGGTTTA
153054316 GGAGTTTA
1 GG-GTTTA
* *
153054324 AGGTGTAA
1 GGGT-TTA
*
153054332 GGGTTTG
1 GGGTTTA
*
153054339 GGGTTAA
1 GGGTTTA
153054346 GGGTTTA
1 GGGTTTA
*
153054353 GAGTTTA
1 GGGTTTA
*
153054360 GTGTTTA
1 GGGTTTA
*
153054367 TGGG-ATA
1 -GGGTTTA
*
153054374 GGGGTTAA
1 -GGGTTTA
153054382 GAGGTTTA
1 G-GGTTTA
153054390 GGGTTTA
1 GGGTTTA
153054397 G
1 G
153054398 ATTAATTAGT
Statistics
Matches: 83, Mismatches: 25, Indels: 14
0.68 0.20 0.11
Matches are distributed among these distances:
5 2 0.02
6 3 0.04
7 63 0.76
8 15 0.18
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:153055673 original size:25 final size:25
Alignment explanation
Indices: 153055612--153055675 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
153055602 ATTCAAAACT
*
153055612 CACCGTTTCAACTGTTCCCACCACG
1 CACCGTTTCAATTGTTCCCACCACG
* *
153055637 CACCGTTTCAATTGTTTCCACCATG
1 CACCGTTTCAATTGTTCCCACCACG
153055662 CACCGTTTCAATTG
1 CACCGTTTCAATTG
153055676 ATTTTACAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.31
Consensus pattern (25 bp):
CACCGTTTCAATTGTTCCCACCACG
Found at i:153058858 original size:43 final size:43
Alignment explanation
Indices: 153058797--153058920 Score: 203
Period size: 43 Copynumber: 2.9 Consensus size: 43
153058787 TTAATTTTTA
* *
153058797 TGACCTTTAGTGGCGTTTGTGGGAAAAGCGCCATTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCC
* *
153058840 TGACCTTTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCC
*
153058883 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAA
153058921 AGCCTAAAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCC
Found at i:153063524 original size:30 final size:30
Alignment explanation
Indices: 153063439--153063535 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
153063429 TAAACTAAAA
* * *
153063439 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
153063469 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
153063499 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
153063528 ATGAGCTA
1 -TGAGCTA
153063536 GGAATGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:153064916 original size:30 final size:30
Alignment explanation
Indices: 153064831--153064927 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
153064821 TAAACTAAAA
* *
153064831 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
153064861 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
153064891 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
153064920 ATGAGCTA
1 -TGAGCTA
153064928 GGAATGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:153065984 original size:30 final size:30
Alignment explanation
Indices: 153065903--153065986 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 30
153065893 CTAAAATGAG
* * * *
153065903 CTAAGCTTTAGCTTGTGAGCTAAAGTTGAG
1 CTAAGGTTTAGCTCGTGAGCTGAAGTTGAA
* * * * * *
153065933 CTGAGGCTAAACTCCTAAGCTGAAGTTGAA
1 CTAAGGTTTAGCTCGTGAGCTGAAGTTGAA
153065963 CTAAGGTTTAGCTCGTGAGCTGAA
1 CTAAGGTTTAGCTCGTGAGCTGAA
153065987 TATGAGCTAG
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (30 bp):
CTAAGGTTTAGCTCGTGAGCTGAAGTTGAA
Found at i:153066917 original size:19 final size:19
Alignment explanation
Indices: 153066866--153066949 Score: 64
Period size: 19 Copynumber: 4.1 Consensus size: 19
153066856 ACTTGCTGTA
*
153066866 TTTTATTTATATCTTTATAT
1 TTTTATTTTTAT-TTTATAT
153066886 TTAATCTAATTTTTATTATT-TA-
1 TT--T-T-ATTTTTATT-TTATAT
*
153066908 TTTTAGTTTTGATTTTATAT
1 TTTTA-TTTTTATTTTATAT
153066928 TTTTATTTTTATTTTAATAT
1 TTTTATTTTTATTTT-ATAT
153066948 TT
1 TT
153066950 AATAACTTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
18 3 0.06
19 19 0.37
20 14 0.27
22 3 0.06
23 4 0.08
24 9 0.17
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTATTTTTATTTTATAT
Found at i:153066923 original size:6 final size:6
Alignment explanation
Indices: 153066866--153066942 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
153066856 ACTTGCTGTA
* * * * * *
153066866 TTTTAT TTATAT CTTTAT ATTTAA TCTAAT TTTTAT TATTTA- TTTTAGT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT TTTTA-T
*
153066915 TTTGAT TTTATAT TTTTAT TTTTAT TTT
1 TTTTAT TTT-TAT TTTTAT TTTTAT TTT
153066943 AATATTTAAT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
5 4 0.07
6 37 0.69
7 13 0.24
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:153066937 original size:20 final size:20
Alignment explanation
Indices: 153066908--153066949 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
153066898 TTATTATTTA
153066908 TTTTAGTTTTGATTTT-ATAT
1 TTTTAGTTTT-ATTTTAATAT
*
153066928 TTTTATTTTTATTTTAATAT
1 TTTTAGTTTTATTTTAATAT
153066948 TT
1 TT
153066950 AATAACTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTAGTTTTATTTTAATAT
Found at i:153066949 original size:14 final size:13
Alignment explanation
Indices: 153066894--153066942 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
153066884 ATTTAATCTA
153066894 ATTTT-TATTATTT
1 ATTTTATATT-TTT
* *
153066907 ATTTTA-GTTTTG
1 ATTTTATATTTTT
153066919 ATTTTATATTTTT
1 ATTTTATATTTTT
153066932 ATTTT-TATTTT
1 ATTTTATATTTT
153066943 AATATTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
12 14 0.47
13 16 0.53
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (13 bp):
ATTTTATATTTTT
Found at i:153067259 original size:43 final size:43
Alignment explanation
Indices: 153067198--153067382 Score: 244
Period size: 43 Copynumber: 4.3 Consensus size: 43
153067188 TTTCATGACC
* *
153067198 TTTAGCGGCGATTGTGGGAAAAGCGCCGCTAAAGGTCACGGCT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGACT
* * *
153067241 TTTAGCGGAGTTTGTGGGAAAAGCGCCGCTAAAGGTCGCAACT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGACT
* * * * *
153067284 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTGAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGACT
* * * *
153067327 TTTACCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGACT
153067370 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
153067383 TTTTAAAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 125 1.00
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCACGACT
Found at i:153071677 original size:2 final size:2
Alignment explanation
Indices: 153071670--153071703 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
153071660 TCAAGGTGAA
153071670 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
153071704 TTATCTGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:153073735 original size:35 final size:35
Alignment explanation
Indices: 153073693--153073761 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
153073683 TGAAAAAAAT
153073693 TATTGTAAATAC-AAAAAATAACTTTTAAAACATTA
1 TATTGTAAATACAAAAAAATAA-TTTTAAAACATTA
*
153073728 TATTGTAAATACAAAAAAATAATTTTACAACATT
1 TATTGTAAATACAAAAAAATAATTTTAAAACATT
153073762 TTTTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 23 0.72
36 9 0.28
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.35
Consensus pattern (35 bp):
TATTGTAAATACAAAAAAATAATTTTAAAACATTA
Found at i:153075842 original size:14 final size:13
Alignment explanation
Indices: 153075823--153075860 Score: 67
Period size: 13 Copynumber: 2.8 Consensus size: 13
153075813 AACCCAACCT
153075823 AAAAAAAAAAATC
1 AAAAAAAAAAATC
153075836 AAAAAAAAAAATC
1 AAAAAAAAAAATC
153075849 AAAAAAAGAAAA
1 AAAAAAA-AAAA
153075861 AACTTAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.87, C:0.05, G:0.03, T:0.05
Consensus pattern (13 bp):
AAAAAAAAAAATC
Found at i:153076100 original size:26 final size:24
Alignment explanation
Indices: 153076061--153076118 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 24
153076051 AGAGAAGAAA
*
153076061 TTTTTTTGAGATTCAAGAAGAGATTT
1 TTTTTTTGAAATTCAAG-AG-GATTT
*
153076087 TTTTTTTGAAATTCAAGAGGGTTT
1 TTTTTTTGAAATTCAAGAGGATTT
153076111 TTTTTTTG
1 TTTTTTTG
153076119 GGAACAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 12 0.40
25 2 0.07
26 16 0.53
ACGTcount: A:0.24, C:0.03, G:0.19, T:0.53
Consensus pattern (24 bp):
TTTTTTTGAAATTCAAGAGGATTT
Found at i:153076835 original size:3 final size:3
Alignment explanation
Indices: 153076615--153076820 Score: 109
Period size: 3 Copynumber: 67.7 Consensus size: 3
153076605 TTTTCTTGCA
* *
153076615 TAT TAGT TAC TAT TAT TAT TAT TAT TACCT TCAT T-T CAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TA--T T-AT TAT TAT TAT TAT TAT
* ** * * * * *
153076663 TAC TAT TGC TAT TTT TTT TGT TGT T-T ATAT TTT TAT T-T ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT
*
153076708 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CTCCGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT
* * * * * *
153076756 GAC TAT TAT TAT TAT T-T TGT TA- TAT TAT TGT TA- TAT TAT CAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
153076801 TTT TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
153076821 CTACAACTAT
Statistics
Matches: 156, Mismatches: 32, Indels: 30
0.72 0.15 0.14
Matches are distributed among these distances:
2 9 0.06
3 135 0.87
4 8 0.05
5 2 0.01
6 2 0.01
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:153077005 original size:21 final size:21
Alignment explanation
Indices: 153076960--153077039 Score: 69
Period size: 21 Copynumber: 4.0 Consensus size: 21
153076950 TTTCTCTGTT
** *
153076960 TTATTACTATTATTAATATCA
1 TTATTACTATTATTTTTATTA
153076981 TTATTACTATTATTTTTA-T-
1 TTATTACTATTATTTTTATTA
*
153077000 TT-TTA-TTTTATTTTTATTA
1 TTATTACTATTATTTTTATTA
* * *
153077019 CTACTACTGTTATTTTTATTA
1 TTATTACTATTATTTTTATTA
153077040 ACATATTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 10 0.21
18 4 0.08
19 3 0.06
20 2 0.04
21 29 0.60
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATTACTATTATTTTTATTA
Found at i:153077150 original size:15 final size:15
Alignment explanation
Indices: 153077130--153077160 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
153077120 TATTATTTTC
153077130 TATTTATTACTATTA
1 TATTTATTACTATTA
153077145 TATTTATTACTATTA
1 TATTTATTACTATTA
153077160 T
1 T
153077161 TATATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:153077177 original size:18 final size:18
Alignment explanation
Indices: 153077140--153077177 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
153077130 TATTTATTAC
*
153077140 TATTATATTTATTACTAT
1 TATTATATTTATTACCAT
153077158 TATTATATTT-TTACCCAT
1 TATTATATTTATTA-CCAT
153077176 TA
1 TA
153077178 CTCTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTTATTACCAT
Found at i:153083737 original size:40 final size:40
Alignment explanation
Indices: 153083692--153083858 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
153083682 CGGAATATAA
153083692 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
153083732 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
153083772 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
153083812 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
153083851 CCGGATAT
1 CCGGATAT
153083859 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:153083842 original size:80 final size:79
Alignment explanation
Indices: 153083692--153083858 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
153083682 CGGAATATAA
* *
153083692 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
153083757 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
153083772 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
153083834 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
153083851 CCGGATAT
1 CCGGATAT
153083859 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:153084706 original size:17 final size:19
Alignment explanation
Indices: 153084683--153084728 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
153084673 AAGAAGCATG
153084683 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
153084701 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
153084719 AATCATGCTC
1 AATCATGCTC
153084729 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:153091733 original size:40 final size:40
Alignment explanation
Indices: 153091688--153091854 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
153091678 CGGAATATAA
153091688 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
153091728 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
153091768 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
153091808 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
153091847 CCGGATAT
1 CCGGATAT
153091855 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:153091838 original size:80 final size:79
Alignment explanation
Indices: 153091688--153091854 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
153091678 CGGAATATAA
* *
153091688 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
153091753 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
153091768 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
153091830 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
153091847 CCGGATAT
1 CCGGATAT
153091855 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:153092702 original size:17 final size:19
Alignment explanation
Indices: 153092679--153092724 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
153092669 AAGAAGCATG
153092679 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
153092697 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
153092715 AATCATGCTC
1 AATCATGCTC
153092725 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:153103887 original size:13 final size:13
Alignment explanation
Indices: 153103869--153103895 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
153103859 GAATGTATTC
153103869 ATTCGTCGTTCTA
1 ATTCGTCGTTCTA
153103882 ATTCGTCGTTCTA
1 ATTCGTCGTTCTA
153103895 A
1 A
153103896 CACGAGGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (13 bp):
ATTCGTCGTTCTA
Found at i:153110910 original size:25 final size:25
Alignment explanation
Indices: 153110860--153110910 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
153110850 CCCTTATAAT
* * *
153110860 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCATAG
153110885 GTGAAAATGACCATTATACCCATAG
1 GTGAAAATGACCATTATACCCATAG
153110910 G
1 G
153110911 GATATATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCATAG
Found at i:153110965 original size:10 final size:10
Alignment explanation
Indices: 153110950--153110989 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
153110940 CTGTATTGTA
153110950 CATGATATGC
1 CATGATATGC
153110960 CATGATATGC
1 CATGATATGC
*
153110970 ACCTGATATGC
1 -CATGATATGC
153110981 CATGATATG
1 CATGATATG
153110990 TTTATATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATGATATGC
Found at i:153111069 original size:25 final size:25
Alignment explanation
Indices: 153111035--153111104 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
153111025 GAGGAAGTGC
* *
153111035 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTCACCA
*
153111060 AAAAGGGCTTTGCCCCAGTTCATCA
1 AAAAGGGCTTTGCCCCAGTTCACCA
*
153111085 AAAAGGGCTTTGCCCGAGTT
1 AAAAGGGCTTTGCCCCAGTT
153111105 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTCACCA
Found at i:153111361 original size:31 final size:31
Alignment explanation
Indices: 153111325--153111408 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
153111315 CATTTATAGT
* *
153111325 AAAGGCTTCGACCTAGTGATATGAATAATGA
1 AAAGGCTTCGACCCAGTGATATGAATAACGA
* *
153111356 AAAGGCTTCGGCCCAGTGATATGATTAACGA
1 AAAGGCTTCGACCCAGTGATATGAATAACGA
153111387 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGACCCAGTGATATG
153111409 TTGAGACTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGAATAACGA
Found at i:153113658 original size:27 final size:26
Alignment explanation
Indices: 153113598--153113750 Score: 132
Period size: 27 Copynumber: 5.7 Consensus size: 26
153113588 TTAGTTTACC
* *
153113598 AAATTACTAAAATACCCCCAG-TTGTA
1 AAATTAC-CAAATACCCTCAGTTTGTA
*
153113624 AAATTACCAAAGTACCCTCAGTTTATA
1 AAATTACCAAA-TACCCTCAGTTTGTA
*
153113651 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTA-CCAAATACCCTCAG-TTTGTA
*
153113678 AAATTATCCAAATACCCTCAGTTTGCA
1 AAATTA-CCAAATACCCTCAGTTTGTA
* **
153113705 AAATTACTGAAATACCCTC-GACATGTA
1 AAATTAC-CAAATACCCTCAG-TTTGTA
*
153113732 AAATTATCAAAGTACCCTC
1 AAATTACCAAA-TACCCTC
153113751 GAATTACAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 15
0.78 0.10 0.11
Matches are distributed among these distances:
25 3 0.03
26 21 0.20
27 75 0.71
28 6 0.06
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCTCAGTTTGTA
Found at i:153113761 original size:27 final size:27
Alignment explanation
Indices: 153113590--153113793 Score: 86
Period size: 27 Copynumber: 7.6 Consensus size: 27
153113580 AGAATACTTT
* * *
153113590 AGTTTACCAAATTACTAAAATACCC-CC
1 AGTTTACAAAATTA-TCAAATACCCTCG
*
153113617 AGTTGT--AAAATTACCAAAGTACCCTC-
1 AGTT-TACAAAATTATCAAA-TACCCTCG
* * *
153113643 AGTTTATAAAATTACCCAAATATCCTCG
1 AGTTTACAAAATTA-TCAAATACCCTCG
**
153113671 A-TTTGTAAAATTATCCAAATACCCTC-
1 AGTTTACAAAATTAT-CAAATACCCTCG
* *
153113697 AGTTTGCAAAATTACTGAAATACCCTCG
1 AGTTTACAAAATTA-TCAAATACCCTCG
* *
153113725 ACATGT--AAAATTATCAAAGTACCCTCG
1 A-GTTTACAAAATTATCAAA-TACCCTCG
* ****
153113752 A-ATTACAAAAATTACTGTTTTACCCTCG
1 AGTTTAC-AAAATTA-TCAAATACCCTCG
153113780 A-TTTACAAAATTAT
1 AGTTTACAAAATTAT
153113794 TATTTTACCC
Statistics
Matches: 141, Mismatches: 19, Indels: 35
0.72 0.10 0.18
Matches are distributed among these distances:
25 5 0.04
26 21 0.15
27 83 0.59
28 29 0.21
29 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AGTTTACAAAATTATCAAATACCCTCG
Found at i:153113761 original size:54 final size:54
Alignment explanation
Indices: 153113590--153113768 Score: 193
Period size: 54 Copynumber: 3.3 Consensus size: 54
153113580 AGAATACTTT
* * * * *
153113590 AGTTTACCAAATTACTAAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
* ** * *
153113643 AGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCCAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTAT-CAAAGTACCCTC
* *
153113697 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
*
153113751 -GAATTACAAAAATTACTG
1 AG-TTTAC-AAAATTACTG
153113769 TTTTACCCTC
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 25 0.24
54 65 0.62
55 14 0.13
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:153113799 original size:27 final size:27
Alignment explanation
Indices: 153113744--153113912 Score: 221
Period size: 27 Copynumber: 6.2 Consensus size: 27
153113734 ATTATCAAAG
* *
153113744 TACCCTCGAATTACAAAAATTACTGTTT
1 TACCCTCGATTTAC-AAAATTACTATTT
*
153113772 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
153113799 TACCCTCGATTGACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
153113826 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
153113853 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
153113880 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
153113907 TACCCT
1 TACCCT
153113913 TAGGGTGTTA
Statistics
Matches: 123, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
27 110 0.89
28 13 0.11
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:153113835 original size:54 final size:53
Alignment explanation
Indices: 153113744--153113912 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 53
153113734 ATTATCAAAG
* *
153113744 TACCCTCGAATTACAAAAATTACTGTTTTACCCTCGATTTACAAAATTATTATTT
1 TACCCTCG-ATTAC-AGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
153113799 TACCCTCGATTGACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATT-ACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
153113853 TACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGA-TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
153113907 TACCCT
1 TACCCT
153113913 TAGGGTGTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
54 94 0.89
55 12 0.11
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
Found at i:153113934 original size:54 final size:53
Alignment explanation
Indices: 153113767--153113939 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 53
153113757 CAAAAATTAC
* * ** * *
153113767 TGTTTTACCCTCGATTTACAAAATTATTATTTTACCC-TCGATTGACAGAATTAC
1 TGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTAGA-TGTTA-AATGAT
* *
153113821 TGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCA-AT-TTACA-GAAT
1 TGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTAGATGTTAAATG-AT
* * *
153113872 TACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTAGGGTGTTAAATGAT
1 T---GTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTA-GATGTTAAATGAT
*
153113929 TGTTTTGCCCT
1 TGTTTTACCCT
153113940 TGTGGGCAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
51 3 0.03
52 1 0.01
53 1 0.01
54 82 0.85
56 1 0.01
57 7 0.07
58 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (53 bp):
TGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTAGATGTTAAATGAT
Found at i:153114192 original size:27 final size:26
Alignment explanation
Indices: 153114148--153114199 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
153114138 CTCGCTACAA
*
153114148 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
153114175 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
153114200 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:153114435 original size:6 final size:6
Alignment explanation
Indices: 153114416--153114484 Score: 63
Period size: 6 Copynumber: 11.3 Consensus size: 6
153114406 TTGCATTCAC
* *
153114416 ATTCTG ATAT-TG ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
153114465 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
153114485 AATGTTTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
5 3 0.06
6 43 0.83
7 5 0.10
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:153118230 original size:46 final size:50
Alignment explanation
Indices: 153118163--153118285 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 50
153118153 GGACAGGACA
* *
153118163 AGACA-GAAGTGAGCCATGTAAGTCCATA-T-CA-GT-TATATGGCTTTGG
1 AGACAGGAA-TGAGCCATGTAAGTCCATATTACATATATATATGGCATTGG
* *
153118209 AGACAGGAATGAGCCATGTAAGCCCATATTATATATATATATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATTACATATATATATGGCATTGG
* **
153118259 AGACAGGAATAATTCATGTAAGTCCAT
1 AGACAGGAATGAGCCATGTAAGTCCAT
153118286 GTCGAAGACA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 23 0.36
47 4 0.06
48 1 0.02
49 1 0.02
50 35 0.55
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AGACAGGAATGAGCCATGTAAGTCCATATTACATATATATATGGCATTGG
Found at i:153119635 original size:12 final size:12
Alignment explanation
Indices: 153119604--153119638 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
153119594 AAGAAACATT
*
153119604 ATCAGAACTAGA
1 ATCAGAATTAGA
153119616 ATCAGAATTAGA
1 ATCAGAATTAGA
153119628 ATCAGAATTAG
1 ATCAGAATTAG
153119639 GTGACAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:153119656 original size:25 final size:26
Alignment explanation
Indices: 153119632--153119686 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 26
153119622 ATTAGAATCA
* *
153119632 GAATTAGGTGACAAAATC-AGAATCA
1 GAATCAGGTAACAAAATCAAGAATCA
* * *
153119657 GTATCAGGTAACAGAATCAAAAATCA
1 GAATCAGGTAACAAAATCAAGAATCA
153119683 GAAT
1 GAAT
153119687 GTGAATGCCA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (26 bp):
GAATCAGGTAACAAAATCAAGAATCA
Found at i:153120080 original size:22 final size:22
Alignment explanation
Indices: 153120052--153120116 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
153120042 GCAAATACGT
*
153120052 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
153120074 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
153120096 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
153120117 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:153120601 original size:27 final size:27
Alignment explanation
Indices: 153120570--153120869 Score: 414
Period size: 27 Copynumber: 11.3 Consensus size: 27
153120560 AAGGTATCTC
*
153120570 GGTAATTCTACCCTGCAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
*
153120597 AGTAATTCTACCCTACA-GGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
153120623 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
153120650 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTT
*
153120677 GGTAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
153120703 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
153120730 GGTAATTCTACCCTA-A-GGGTA-TTT
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
153120754 CGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* *
153120781 GATAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * *
153120807 GATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
* * * *
153120834 GATAAATCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTT
153120861 GGTAATTCT
1 GGTAATTCT
153120870 GTAAATCGAG
Statistics
Matches: 252, Mismatches: 15, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
24 16 0.06
25 6 0.02
26 82 0.33
27 148 0.59
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTT
Found at i:153120619 original size:53 final size:52
Alignment explanation
Indices: 153120562--153120869 Score: 422
Period size: 53 Copynumber: 5.8 Consensus size: 52
153120552 TATCCCATAA
* * *
153120562 GGTATCTCGGTAATTCTACCCTGCAGGGGTATTTTAGTAATTCTACCCTACAG
1 GGTATTTCGGTAATTCTACCCTACA-GGGTATTTTGGTAATTCTACCCTACAG
*
153120615 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACA-GGGTATTTTGGTAATTCTACCCTACA-G
* *
153120669 GGTATTTTGGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTAC-AG
*
153120722 GGTATTTCGGTAATTCTACCCTA-AGGGTA-TTTCGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACA-G
* * *
153120773 GGTATTTCGATAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACAG
* * *
153120825 TGGTATTTCGATAAATCTACCCTACAAGGGTATTTCGGTAATTCT
1 -GGTATTTCGGTAATTCTACCCTAC-AGGGTATTTTGGTAATTCT
153120870 GTAAATCGAG
Statistics
Matches: 234, Mismatches: 14, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
50 1 0.00
51 40 0.17
52 13 0.06
53 135 0.58
54 45 0.19
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (52 bp):
GGTATTTCGGTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACAG
Found at i:153120695 original size:80 final size:79
Alignment explanation
Indices: 153120562--153120869 Score: 451
Period size: 80 Copynumber: 3.9 Consensus size: 79
153120552 TATCCCATAA
* * * *
153120562 GGTATCTCGGTAATTCTACCCTGCAGGGGTATTTTAGTAATTCTACCCTACAGGGTATTTTGGTA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTCGGTA
153120627 ATTCTACCCTACAGG
66 ATTCTACCCTACA-G
*
153120642 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTCGGTA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTCGGTA
153120707 ATTCTACCCTACAAG
66 ATTCTACCCTAC-AG
* *
153120722 GGTATTTCGGTAATTCTACCCTA-A-GGGTA-TTTCGTAATTCTACCCTACAGGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACA-GGGTATTTCGGT
153120784 AATTCTACCCTACAG
65 AATTCTACCCTACAG
* * * * *
153120799 GGTATTTCGATAATTCTACCCTACAGTGGTATTTCGATAAATCTACCCTACAAGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTAC-AGGGTATTTCGGT
153120864 AATTCT
65 AATTCT
153120870 GTAAATCGAG
Statistics
Matches: 207, Mismatches: 15, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
77 43 0.21
78 30 0.14
79 5 0.02
80 127 0.61
81 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (79 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGTATTTCGGTA
ATTCTACCCTACAG
Found at i:153120881 original size:27 final size:27
Alignment explanation
Indices: 153120860--153120989 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
153120850 AAGGGTATTT
*
153120860 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
153120887 TGCTAATTCTATAAATTGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
153120914 CGGTAATTTTGTAAATCGAGGGTGAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
153120941 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
153120968 TGGTAATTCTACAAATTGAGGG
1 CGGTAATTCTATAAATCGAGGG
153120990 CATTTCAGTA
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (27 bp):
CGGTAATTCTATAAATCGAGGGTAAAA
Found at i:153121001 original size:81 final size:81
Alignment explanation
Indices: 153120860--153121009 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 81
153120850 AAGGGTATTT
* * * * *
153120860 CGGTAATTCTGTAAATCGAGGGTAAAATGCTAATTCTATAAATTGAGGGTAAAACGGTAATTTTG
1 CGGTAATTCTATAAATCGAGGGTAAAATGCTAATTCTACAAATTGAGGGCAAAACAGTAATTTGG
153120925 TAAATCGAGGGTGAAA
66 TAAATCGAGGGTGAAA
* ***
153120941 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTGAGGGCATTTCAGTAATTTGG
1 CGGTAATTCTATAAATCGAGGGTAAAATGCTAATTCTACAAATTGAGGGCAAAACAGTAATTTGG
153121006 TAAA
66 TAAA
153121010 CTAAAGTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (81 bp):
CGGTAATTCTATAAATCGAGGGTAAAATGCTAATTCTACAAATTGAGGGCAAAACAGTAATTTGG
TAAATCGAGGGTGAAA
Found at i:153125205 original size:40 final size:40
Alignment explanation
Indices: 153125160--153125324 Score: 167
Period size: 39 Copynumber: 4.2 Consensus size: 40
153125150 CGGAATATAA
153125160 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
153125200 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
153125240 CCGGA-ATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
153125278 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
153125317 CCGGATAT
1 CCGGATAT
153125325 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 13 0.13
39 48 0.47
40 42 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:153133686 original size:27 final size:26
Alignment explanation
Indices: 153133642--153133693 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
153133632 CTCGCTGCAA
*
153133642 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
153133669 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
153133694 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:153133748 original size:13 final size:13
Alignment explanation
Indices: 153133730--153133754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
153133720 ATCTGCTTCG
153133730 ACATATATATATA
1 ACATATATATATA
153133743 ACATATATATAT
1 ACATATATATAT
153133755 CTGTTCTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
ACATATATATATA
Found at i:153133803 original size:27 final size:26
Alignment explanation
Indices: 153133751--153133810 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
153133741 TAACATATAT
*
153133751 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
153133777 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
153133804 ATATCTG
1 ATATCTG
153133811 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:153141120 original size:67 final size:67
Alignment explanation
Indices: 153141012--153141201 Score: 274
Period size: 67 Copynumber: 2.8 Consensus size: 67
153141002 GAGGAAGCGT
* *
153141012 TCTGGCAGCCTCGCTGCAATTTGGTGGCCTCGCCACATATATCTGTTCTGGTAACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTAACTTCGTCACAA
153141077 TA
66 TA
* *
153141079 TCTGGCAGCCTCGCTACAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTAACTTCGTCACAA
153141144 TA
66 TA
* *
153141146 TCTTGTAGCCTCGCTGCAATCTGGTGG-CTTCGCCACTTATATATCTTTGTTCTGGT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTT-GCCAC--ATATATC--TGTTCTGGT
153141202 GGCCTAGCCA
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
66 3 0.03
67 92 0.83
69 7 0.06
71 9 0.08
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.34
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTTGCCACATATATCTGTTCTGGTAACTTCGTCACAA
TA
Done.