Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 497 of 770
Found at i:153700484 original size:40 final size:39
Alignment explanation
Indices: 153700338--153700453 Score: 205
Period size: 39 Copynumber: 2.9 Consensus size: 39
153700328 AATGTGCAAA
153700338 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
153700377 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
* *
153700416 TTGTGATATCCGGGTTAAGCCCCGAAGGCATTTGTGCG
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
153700454 GGTTACCATA
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 57 0.77
40 17 0.23
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.25
Consensus pattern (39 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG
Found at i:153700511 original size:79 final size:79
Alignment explanation
Indices: 153700340--153700522 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 79
153700330 TGTGCAAATT
* *** *
153700340 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGG
1 GTGATATCCGGGTTAAGCCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
** *
153700404 CAATTGTGCGAGTT
66 CAATTGAACGAGTA
* * *
153700418 GTGATATCCGGGTTAAGCCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAGCCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
**
153700483 GCGTTTGAACGAGTA
65 GCAATTGAACGAGTA
* *
153700498 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGCCCCGAAGG
153700523 TATGTGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 16 0.18
79 46 0.53
80 24 0.28
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (79 bp):
GTGATATCCGGGTTAAGCCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
CAATTGAACGAGTA
Found at i:153706083 original size:44 final size:44
Alignment explanation
Indices: 153706020--153706105 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
153706010 CCGTTTTAGG
* *
153706020 GTTAAATCAAAACAGTGGTTTTGGGGCCACAAATTTGAAGTAGA
1 GTTAAATCAAAACAGTGGTTTCGGGGCCAAAAATTTGAAGTAGA
*
153706064 GTTAAATCAAAATAGTGGTTTCGGGGCCAAAAATTTGAAGTA
1 GTTAAATCAAAACAGTGGTTTCGGGGCCAAAAATTTGAAGTA
153706106 TAAATATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.28
Consensus pattern (44 bp):
GTTAAATCAAAACAGTGGTTTCGGGGCCAAAAATTTGAAGTAGA
Found at i:153714132 original size:160 final size:161
Alignment explanation
Indices: 153713939--153714240 Score: 419
Period size: 160 Copynumber: 1.9 Consensus size: 161
153713929 CAGGTTATAG
* ** * * *
153713939 AATTACCGTTTTACCTTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTAACCTCAATTTACAGAATTACCATTT
* *
153714004 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCC-CAAT
66 TACCCTCGA-TTTACAGAATTACTATTTCACCATCGATTTACAGAATTACCGTTTTACCCTCAAT
*
153714067 TTACATAATTACTGTTTTACCCCGATTTACAT
130 TTACAAAATTACTGTTTTACCCCGATTTACAT
* * * *
153714099 AATTATCGTTTTACCCTCGATTTACAGAATTACCTTTTTAACCTCAATTTATAGAATTACCATTT
1 AATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTAACCTCAATTTACAGAATTACCATTT
* * * * *
153714164 TACCCTCGATTTATAGAATTACTGTTTCACCATTGATTTACAGAATTACTGTTTTACCCTCGATT
66 TACCCTCGATTTACAGAATTACTATTTCACCATCGATTTACAGAATTACCGTTTTACCCTCAATT
153714229 TACAAAATTACT
131 TACAAAATTACT
153714241 AAAATACCCT
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
160 106 0.87
161 16 0.13
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (161 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTAACCTCAATTTACAGAATTACCATTT
TACCCTCGATTTACAGAATTACTATTTCACCATCGATTTACAGAATTACCGTTTTACCCTCAATT
TACAAAATTACTGTTTTACCCCGATTTACAT
Found at i:153714221 original size:187 final size:187
Alignment explanation
Indices: 153713900--153714239 Score: 470
Period size: 187 Copynumber: 1.8 Consensus size: 187
153713890 CCAAAGTACT
* * * * *
153713900 CCCGATTTATAGAATTACCGTTTTACTCTCAGGTTATAGAATTACCGTTTTACCTTCGATTTGTA
1 CCCGATTTACAGAATTACCGTTTTACCCTCAGGTTACAGAATTACCGTTTTACCTTCAATTTATA
* *
153713965 AAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATT
66 AAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAGTTTACAGAATTACTATT
*
153714030 TTACCCTCGATTTACAGAATTACCGTTTTACCCCAATTTACATAATTACTGTTTTAC
131 TTACCCTCGATTTACAAAATTACCGTTTTACCCCAATTTACATAATTACTGTTTTAC
* * * *
153714087 CCCGATTTACATAATTATCGTTTTACCCTC-GATTTACAGAATTACCTTTTTAACC-TCAATTTA
1 CCCGATTTACAGAATTACCGTTTTACCCTCAG-GTTACAGAATTACCGTTTT-ACCTTCAATTTA
* * * * *
153714150 TAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTCACCAT-TGATTTACAGAATTACT
64 TAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAG-TTTACAGAATTACT
*
153714214 GTTTTACCCTCGATTTACAAAATTAC
128 ATTTTACCCTCGATTTACAAAATTAC
153714240 TAAAATACCC
Statistics
Matches: 132, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
186 2 0.02
187 127 0.96
188 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (187 bp):
CCCGATTTACAGAATTACCGTTTTACCCTCAGGTTACAGAATTACCGTTTTACCTTCAATTTATA
AAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAGTTTACAGAATTACTATT
TTACCCTCGATTTACAAAATTACCGTTTTACCCCAATTTACATAATTACTGTTTTAC
Found at i:153714240 original size:27 final size:27
Alignment explanation
Indices: 153713902--153714240 Score: 357
Period size: 27 Copynumber: 12.6 Consensus size: 27
153713892 AAAGTACTCC
* * *
153713902 CGATTTATAGAATTACCGTTTTACTCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * * *
153713929 C-AGGTTATAGAATTACCGTTTTACCTT
1 CGA-TTTACAGAATTACTGTTTTACCCT
** * *
153713956 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153713983 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153714010 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
153714037 CGATTTACAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
* *
153714063 CAATTTACATAATTACTGTTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
*
153714089 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
153714116 CGATTTACAGAATTACCT-TTTTAACCT
1 CGATTTACAGAATTA-CTGTTTTACCCT
* * **
153714143 CAATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
153714170 CGATTTATAGAATTACTGTTTCACCAT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153714197 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153714224 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
153714241 AAAATACCCT
Statistics
Matches: 268, Mismatches: 35, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.00
26 49 0.18
27 215 0.80
28 2 0.01
29 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:153715571 original size:9 final size:9
Alignment explanation
Indices: 153715559--153715615 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
153715549 TTTGATAAAC
153715559 ATGATATGT
1 ATGATATGT
*
153715568 ATGATATGCAC
1 ATGATATG--T
*
153715579 ATGACATGT
1 ATGATATGT
*
153715588 ATGATATGCAC
1 ATGATATG--T
153715599 ATGATATGT
1 ATGATATGT
153715608 ATGATATG
1 ATGATATG
153715616 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:153715582 original size:20 final size:20
Alignment explanation
Indices: 153715557--153715619 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
153715547 ATTTTGATAA
153715557 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
153715577 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
153715597 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
153715617 ACA
1 ACA
153715620 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:153715728 original size:24 final size:24
Alignment explanation
Indices: 153715673--153715838 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
153715663 GAGGAAGTGA
153715673 AAAAGGGCTTATG-CCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
153715695 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
153715719 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
153715743 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
153715767 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
153715791 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
153715815 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
153715839 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
22 12 0.09
23 9 0.07
24 101 0.76
25 11 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:153716064 original size:31 final size:31
Alignment explanation
Indices: 153716029--153716092 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
153716019 CGTTTACCGT
*
153716029 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
153716060 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
153716091 AA
1 AA
153716093 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:153716384 original size:66 final size:68
Alignment explanation
Indices: 153716255--153716384 Score: 221
Period size: 66 Copynumber: 1.9 Consensus size: 68
153716245 TGGGGACTTG
153716255 GGCCGGAGGGGATTCAGAGTGGCCACGGTGATTGTCTTTGGACTTTTAAATAAGCGTAGTTTTCG
1 GGCCGGAGGGGATTCAGAGTGG-CACGGTGATTGTCTTTGGACTTTTAAATAAGCGTAGTTTTCG
153716320 GATT
65 GATT
153716324 GGCCGGAGGGGATTCAGAGTGG-ACGGTGATTGTC-TTGGACTTTTAAATAA-CGTAGGTTTTC
1 GGCCGGAGGGGATTCAGAGTGGCACGGTGATTGTCTTTGGACTTTTAAATAAGCGTA-GTTTTC
153716385 TTTAATTTCC
Statistics
Matches: 60, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
65 4 0.07
66 22 0.37
67 12 0.20
69 22 0.37
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.32
Consensus pattern (68 bp):
GGCCGGAGGGGATTCAGAGTGGCACGGTGATTGTCTTTGGACTTTTAAATAAGCGTAGTTTTCGG
ATT
Found at i:153719120 original size:27 final size:27
Alignment explanation
Indices: 153718984--153719316 Score: 391
Period size: 27 Copynumber: 12.6 Consensus size: 27
153718974 CAAAGTACTC
*
153718984 CGATTTACAGAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153719010 C-AGTTTATAGAATTAC--TTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
** * *
153719035 CGATTTGTAAAATTACCG-TTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
153719061 CGATTTACAGAATTACTG-TTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153719087 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
153719114 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACTGTTTTACCCT
* *
153719141 CAATTTACATAATTACTG-TTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
*
153719166 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
153719193 CGATTTACAGAATTACT-TTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* **
153719219 CAATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
153719246 CGATTTATAGAATTACTGTTTCACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153719273 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
153719300 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
153719317 AAAATACCCT
Statistics
Matches: 266, Mismatches: 28, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
24 6 0.02
25 32 0.12
26 97 0.36
27 129 0.48
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:153719208 original size:132 final size:132
Alignment explanation
Indices: 153718984--153719315 Score: 481
Period size: 132 Copynumber: 2.5 Consensus size: 132
153718974 CAAAGTACTC
* * **
153718984 CGATTTACAGAATTACCGTTTTA-CCTCAGTTTATAGAATTACT-TTTACCCTCGATTTGTAAAA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTACCCTCGATTTACAAAA
* *
153719047 TTACCGTTTACCCTCGATTTACAGAATTACTGTTTACCCTCAGTTTACAGAATTACTATTTTACC
66 TTACCGTTTACCCTCGATTTACAGAATTACTGTTTACCCTCAATTTACAGAATTACCATTTTACC
153719112 CT
131 CT
* * *
153719114 CGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTACTGTTTACCC-CGATTTACATAA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTACCCTCGATTTACAAAA
* *
153719178 TTATCGTTTTACCCTCGATTTACAGAATTACTTTTTACCCTCAATTTACAGAATTACCATTTTAC
66 TTACCG-TTTACCCTCGATTTACAGAATTACTGTTTACCCTCAATTTACAGAATTACCATTTTAC
153719243 CCT
130 CCT
* * * **
153719246 CGATTTATAGAATTACTGTTTCACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACTG-TTTACCCTCGATTTACAAA
153719311 ATTAC
65 ATTAC
153719316 TAAAATACCC
Statistics
Matches: 177, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
130 23 0.13
131 30 0.17
132 103 0.58
133 7 0.04
134 14 0.08
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (132 bp):
CGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTTACCCTCGATTTACAAAA
TTACCGTTTACCCTCGATTTACAGAATTACTGTTTACCCTCAATTTACAGAATTACCATTTTACC
CT
Found at i:153719353 original size:81 final size:79
Alignment explanation
Indices: 153719108--153719359 Score: 195
Period size: 81 Copynumber: 3.2 Consensus size: 79
153719098 ATTACTATTT
* * * ****
153719108 TACCCTCGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTA-CTGTTTACCC-CGATT
1 TACCCTCGATTTACAGAATTA-CTTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATT
* * * **
153719171 TACATAATTATCGTTT
65 TATAGAATTACCG-AA
* ***
153719187 TACCCTCGATTTACAGAATTACTTTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTT
1 TACCCTCGATTTACAGAATTACTTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATTT
* **
153719252 ATAGAATTACTGTT
66 ATAGAATTACCGAA
* * * * *
153719266 TCACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGT
1 T-ACCCTCGATTTACAGAATTACT-TTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGAT
*
153719331 TTGT-GAAATTACCGCAA
64 TTATAG-AATTACCG-AA
*
153719348 TACCCTCAATTT
1 TACCCTCGATTT
153719360 GTAAAACTAC
Statistics
Matches: 143, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
78 23 0.16
79 32 0.22
80 36 0.25
81 51 0.36
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (79 bp):
TACCCTCGATTTACAGAATTACTTTTTACCCTCAATTTACAAAATTACCAAAATACCCTCGATTT
ATAGAATTACCGAA
Found at i:153727903 original size:80 final size:80
Alignment explanation
Indices: 153727819--153727967 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
153727809 TATGGTAACC
* * * *
153727819 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
153727883 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
153727899 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
153727964 CCGG
66 CCGG
153727968 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:153727909 original size:40 final size:38
Alignment explanation
Indices: 153727860--153727967 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
153727850 ATCACGATTT
*
153727860 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
153727900 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
153727940 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
153727968 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:153735996 original size:80 final size:80
Alignment explanation
Indices: 153735912--153736060 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
153735902 TATGGTAACC
* * * *
153735912 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
153735976 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
153735992 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
153736057 CCGG
66 CCGG
153736061 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:153736002 original size:40 final size:38
Alignment explanation
Indices: 153735953--153736060 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
153735943 ATCACGATTT
*
153735953 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
153735993 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
153736033 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
153736061 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:153738403 original size:28 final size:28
Alignment explanation
Indices: 153738346--153738405 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
153738336 TGTACTAGAG
*
153738346 TACCCCTATGTATACAAAATTACCATTA
1 TACCCCTATGTATACAAAATGACCATTA
*
153738374 TACCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATACAAAATGACCAT-TA
153738402 TACC
1 TACC
153738406 TCTAGGGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATACAAAATGACCATTA
Found at i:153738573 original size:27 final size:28
Alignment explanation
Indices: 153738527--153738604 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
153738517 GGTGGCTATG
* *
153738527 CCACAAATTATCTGTTCTGGTGGCCCTA
1 CCACAAAATATCTGTTCTGGTGGCACTA
** *
153738555 CCAC-GTATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGGCACTA
153738582 CCACAAAATATCTGTATCTGGTG
1 CCACAAAATATCTGT-TCTGGTG
153738605 ACTCTGTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
27 22 0.54
28 12 0.29
29 7 0.17
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGGCACTA
Found at i:153738615 original size:29 final size:28
Alignment explanation
Indices: 153738525--153738615 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
153738515 CTGGTGGCTA
* * *
153738525 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* ** *
153738553 TACCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
153738580 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
153738609 TGTCACA
1 TGCCACA
153738616 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
27 22 0.44
28 13 0.26
29 15 0.30
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:153738623 original size:55 final size:56
Alignment explanation
Indices: 153738515--153738629 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
153738505 AGGAAGCGTC
* * *
153738515 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTACCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
* ** *
153738570 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTACCACATATATCTGTAT
153738626 CTGG
1 CTGG
153738630 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACATATATCTGTAT
Found at i:153739094 original size:19 final size:19
Alignment explanation
Indices: 153739070--153739109 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
153739060 TTAATTATTT
* *
153739070 TTTTTATGGTTTTGTTTTA
1 TTTTTATGATTTTATTTTA
*
153739089 TTTTTATTATTTTATTTTA
1 TTTTTATGATTTTATTTTA
153739108 TT
1 TT
153739110 ATGATGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (19 bp):
TTTTTATGATTTTATTTTA
Found at i:153745350 original size:56 final size:56
Alignment explanation
Indices: 153745284--153745420 Score: 177
Period size: 56 Copynumber: 2.4 Consensus size: 56
153745274 CATTGCCATC
* * * *
153745284 AATACATTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTT
1 AATACGTTGGCATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCATGTCT
* *
153745340 AATACGTTGGCATCGATATGTGATTCCGTTATATGTGTACGAGTAAGACCCTGTCT
1 AATACGTTGGCATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCATGTCT
***
153745396 GGGACAG-TGGCATCGATATGTGATT
1 AATAC-GTTGGCATCGATATGTGATT
153745421 ACTTGTAAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 70 0.99
57 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (56 bp):
AATACGTTGGCATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCATGTCT
Found at i:153746942 original size:29 final size:30
Alignment explanation
Indices: 153746898--153746956 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
153746888 TTCCCGAGCC
*
153746898 TAGGGACAAAAGTGTAATTATGCAAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
* *
153746928 TAGGGA-AAAAATGTAATTTTGCCAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
153746957 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (30 bp):
TAGGGACAAAAATGTAATTATGCAAAAGTT
Found at i:153747499 original size:46 final size:46
Alignment explanation
Indices: 153747435--153747553 Score: 211
Period size: 46 Copynumber: 2.6 Consensus size: 46
153747425 TCCAAACTCA
*
153747435 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCG
* *
153747481 TTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACGCCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCG
153747527 TTGAGTTGAGTCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
153747554 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCG
Found at i:153749108 original size:18 final size:18
Alignment explanation
Indices: 153749063--153749114 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
153749053 GGCCCATTTT
*
153749063 AGTAATAGTAAATAGTGC
1 AGTAATAGTAAACAGTGC
* *
153749081 AGCAACAGTAAACAGTGC
1 AGTAATAGTAAACAGTGC
*
153749099 AGTATTAGTAAACAGT
1 AGTAATAGTAAACAGT
153749115 ATGCAAGTCC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (18 bp):
AGTAATAGTAAACAGTGC
Found at i:153749457 original size:27 final size:27
Alignment explanation
Indices: 153749392--153749577 Score: 178
Period size: 27 Copynumber: 6.9 Consensus size: 27
153749382 AAACAAATAT
* * *
153749392 CACATAGGGGCAAAATAGCCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* ** **
153749419 CA-GTTGGAGGCAAAATAGTCATTTCCC
1 CACATAAG-GGCAAAATAGTCATTTTAC
* *
153749446 CTCATAAGGGCAAAACT-GTCATTTTAT
1 CACATAAGGGCAAAA-TAGTCATTTTAC
*
153749473 CACATAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
153749500 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * * *
153749527 CATATAAGGACAAAACAATCATTTTTC
1 CACATAAGGGCAAAATAGTCATTTTAC
153749554 CACATAAGGGCAAAATAGTCATTT
1 CACATAAGGGCAAAATAGTCATTT
153749578 CATCAAATTA
Statistics
Matches: 129, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.03
27 122 0.95
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:153754749 original size:27 final size:27
Alignment explanation
Indices: 153754717--153754771 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
153754707 AGAAATGGAT
153754717 ATGAAATGGGAAATGAA-ATATGAAATG
1 ATGAAATGGGAAATGAATAT-TGAAATG
*
153754744 ATGAAATGGGATATGAATATTGAAATG
1 ATGAAATGGGAAATGAATATTGAAATG
153754771 A
1 A
153754772 ATTCATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.25, T:0.25
Consensus pattern (27 bp):
ATGAAATGGGAAATGAATATTGAAATG
Found at i:153757287 original size:27 final size:28
Alignment explanation
Indices: 153757230--153757299 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
153757220 AAATTTGTAC
**
153757230 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
153757258 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
153757285 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
153757300 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:153757308 original size:27 final size:27
Alignment explanation
Indices: 153757230--153757311 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
153757220 AAATTTGTAC
* *
153757230 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
153757258 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
153757285 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
153757312 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:153765209 original size:27 final size:28
Alignment explanation
Indices: 153765152--153765221 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
153765142 AAATTTGTAC
**
153765152 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
153765180 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
153765207 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
153765222 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:153765230 original size:27 final size:27
Alignment explanation
Indices: 153765152--153765233 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
153765142 AAATTTGTAC
* *
153765152 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
153765180 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
153765207 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
153765234 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:153771437 original size:40 final size:39
Alignment explanation
Indices: 153771382--153771588 Score: 238
Period size: 40 Copynumber: 5.2 Consensus size: 39
153771372 GAATGATACA
* * *
153771382 CGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATATC
*
153771422 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
*
153771462 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
* * *
153771502 CGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATATC
* * **
153771542 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATATC
153771582 C-GGCTAA
1 CGGGCTAA
153771589 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 137 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATATC
Found at i:153773821 original size:39 final size:40
Alignment explanation
Indices: 153773767--153773871 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
153773757 TGCTGGAAAT
* * * **
153773767 TATAACCGGGTTAAGACCCGAAGGCAAT-GTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
153773806 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
*
153773846 TCTATCCGGGCTAAGACCCGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
153773872 TTTGTGCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 25 0.44
40 32 0.56
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.20
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
Found at i:153773862 original size:40 final size:39
Alignment explanation
Indices: 153773767--153773972 Score: 139
Period size: 39 Copynumber: 5.2 Consensus size: 39
153773757 TGCTGGAAAT
* * * * **
153773767 TATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
*
153773806 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
153773846 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTCAC
* * * * * *
153773884 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * * * * **
153773925 CATAACCGGGCTATGTCCCGAAGGCGTTGAACGAGT-AGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCA-C
153773964 TATATCCGG
1 TATATCCGG
153773973 TTAAACTCCG
Statistics
Matches: 130, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
38 4 0.03
39 65 0.50
40 59 0.45
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:153773934 original size:79 final size:80
Alignment explanation
Indices: 153773768--153773949 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 80
153773758 GCTGGAAATT
* * *
153773768 ATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCAT
1 ATAACCGGGCTAAGACCCGAAGGCAATGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCAT
*
153773833 TCGTGCGAGTCATTC
66 TCGTGCGAGTCATCC
* * * * *
153773848 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCA-ATGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
153773910 CTTGGTGCGGGTTA-CC
64 ATTCGTGCGAGTCATCC
* *
153773926 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
153773950 GTTGAACGAG
Statistics
Matches: 83, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 76 0.92
80 5 0.06
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCATCC
Found at i:153781961 original size:40 final size:39
Alignment explanation
Indices: 153781866--153782048 Score: 145
Period size: 40 Copynumber: 4.6 Consensus size: 39
153781856 TGCTGGAAAT
* * * * **
153781866 TATAACCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
*
153781905 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
153781945 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTCAC
* * * * * *
153781983 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
* * *
153782024 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
153782049 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 23, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
38 3 0.03
39 52 0.45
40 58 0.50
41 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:153781989 original size:79 final size:80
Alignment explanation
Indices: 153781871--153782053 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 80
153781861 GAAATTATAA
* * * *
153781871 CCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
153781935 TGCGAGTCATTC-TAT
66 TGCGAGTCA-CCATAT
* * * * *
153781950 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGCATTC
* *
153782013 GTGCGGGTTACCATAT
65 GTGCGAGTCACCATAT
* * *
153782029 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGACCCGAAGGCATTTG
153782054 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
78 2 0.02
79 79 0.92
80 5 0.06
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCACCATAT
Found at i:153788702 original size:40 final size:40
Alignment explanation
Indices: 153788657--153788823 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
153788647 CGGAATATAA
*
153788657 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
153788697 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
153788737 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
153788777 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
153788816 CCGGATAT
1 CCGGATAT
153788824 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:153788807 original size:80 final size:79
Alignment explanation
Indices: 153788673--153788823 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
153788663 ATAACCATGT
*
153788673 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
153788738 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
153788753 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
153788816 CCGGATAT
64 CCGGATAT
153788824 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:153792299 original size:46 final size:46
Alignment explanation
Indices: 153792232--153792447 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
153792222 GGCAACCTGA
153792232 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
153792278 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
153792324 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
153792370 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
153792416 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
153792448 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:153792427 original size:138 final size:130
Alignment explanation
Indices: 153792182--153792447 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
153792172 AGTGTGCTCT
*
153792182 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
153792247 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
153792312 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
153792377 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
153792442 ATGGCA
123 ATGGCA
153792448 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:153797593 original size:46 final size:46
Alignment explanation
Indices: 153797526--153797741 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
153797516 GGCAACCTGA
153797526 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
153797572 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
153797618 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
153797664 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
153797710 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
153797742 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:153797721 original size:138 final size:130
Alignment explanation
Indices: 153797476--153797741 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
153797466 AGTGTGCTCT
*
153797476 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
153797541 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
153797606 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
153797671 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
153797736 ATGGCA
123 ATGGCA
153797742 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:153811997 original size:40 final size:40
Alignment explanation
Indices: 153811938--153812122 Score: 146
Period size: 40 Copynumber: 4.7 Consensus size: 40
153811928 TCGAATGATG
* *
153811938 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTGACTAAA
* * * *
153811978 TCCGGACTAAGATCTGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
* * *
153812018 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAG
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
** * * * *
153812058 TCCGGGTTAAG-TCCGAAGGCATCTATGCGAGTTACTATAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTA-AA
* *
153812098 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
153812123 AACAGTAGCT
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.27
40 83 0.67
41 7 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:153812087 original size:39 final size:40
Alignment explanation
Indices: 153811972--153812119 Score: 151
Period size: 40 Copynumber: 3.7 Consensus size: 40
153811962 GTGCTAAGTG
* * *
153811972 ACTATATCCGGACTAAGATCTGAAGGCAT-TCGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATCT-ATGCGAGTT
* *
153812012 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATCTATGCGAGTT
* **
153812052 ACTAAGTCCGGGTTAAG-TCCGAAGGCATCTATGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATCTATGCGAGTT
* *
153812091 ACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCAT
153812120 TTGAACAGTA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.35
40 61 0.64
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATCTATGCGAGTT
Found at i:153812114 original size:79 final size:81
Alignment explanation
Indices: 153811938--153812122 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
153811928 TCGAATGATG
*
153811938 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
*
153812002 CGTGCGAGTTACTAAA
66 CATGCGAGTTACTAAA
* * * **
153812018 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTA-AGTCCGGGTTAAG-TCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACTATA-TCCGGACTAAGATCCGAAGGCA
153812079 -TCTATGCGAGTTACTATAA
64 TTC-ATGCGAGTTACTA-AA
*
153812098 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
153812123 AACAGTAGCT
Statistics
Matches: 90, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 43 0.48
80 36 0.40
81 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CATGCGAGTTACTAAA
Found at i:153821876 original size:43 final size:45
Alignment explanation
Indices: 153821807--153821895 Score: 155
Period size: 43 Copynumber: 2.0 Consensus size: 45
153821797 AAAATACAAG
153821807 GGCTAAAATGTAAACTGTCCTAAATATGTGTATATGGATTAAATT
1 GGCTAAAATGTAAACTGTCCTAAATATGTGTATATGGATTAAATT
*
153821852 GGCT-AAATGTAAAGTG-CCTAAATATGTGTATATGGATTAAATT
1 GGCTAAAATGTAAACTGTCCTAAATATGTGTATATGGATTAAATT
153821895 G
1 G
153821896 AATGAAATGA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
43 28 0.65
44 11 0.26
45 4 0.09
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (45 bp):
GGCTAAAATGTAAACTGTCCTAAATATGTGTATATGGATTAAATT
Found at i:153823732 original size:39 final size:39
Alignment explanation
Indices: 153823659--153823840 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
153823649 AATGTTCGAG
153823659 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
153823697 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
153823736 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
153823775 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
153823815 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
153823841 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 16 0.13
39 71 0.57
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:153831123 original size:39 final size:39
Alignment explanation
Indices: 153831076--153831258 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
153831066 AATGTTCGAG
153831076 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
153831115 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
153831154 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
153831193 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
153831233 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
153831259 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:153832918 original size:43 final size:43
Alignment explanation
Indices: 153832834--153832973 Score: 133
Period size: 43 Copynumber: 3.3 Consensus size: 43
153832824 TCTGAGACAT
* * * * *
153832834 CGTGTAAGACCGTGTTTGGGACACAGGCCTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* * **
153832877 CGTATAAGACCATGTTTGGGACATTGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTA
* *
153832919 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
*
153832962 CATGTAAGACCA
1 CGTGTAAGACCA
153832974 CATCCGGGAC
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 33 0.42
43 46 0.58
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTA
Found at i:153832983 original size:85 final size:85
Alignment explanation
Indices: 153832833--153832991 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 85
153832823 GTCTGAGACA
* * * * ** **
153832833 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCCGGGA
153832898 CATTGGCATCGTATCTGATT
66 CATTGGCATCGTATCTGATT
* *
153832918 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACATCCGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACATCCGG
*
153832981 GACGTTGGCAT
64 GACATTGGCAT
153832992 TGTACTTGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCCGGGA
CATTGGCATCGTATCTGATT
Found at i:153836334 original size:14 final size:14
Alignment explanation
Indices: 153836315--153836520 Score: 88
Period size: 14 Copynumber: 14.7 Consensus size: 14
153836305 CTTCATAGCT
* *
153836315 TATATATATGTTTA
1 TATATATATATGTA
153836329 TATATATATATGTA
1 TATATATATATGTA
* *
153836343 TATATATGTATATA
1 TATATATATATGTA
* **
153836357 CATATATATACATA
1 TATATATATATGTA
* **
153836371 TATATACATACATA
1 TATATATATATGTA
* * *
153836385 TACATACATATATA
1 TATATATATATGTA
* * **
153836399 TACATACATATACA
1 TATATATATATGTA
* **
153836413 TACATATATATACA
1 TATATATATATGTA
* * **
153836427 TACATATACATACA
1 TATATATATATGTA
* *
153836441 TATATATACATATA
1 TATATATATATGTA
* * *
153836455 TATACATACATATA
1 TATATATATATGTA
**
153836469 TATATATATACATA
1 TATATATATATGTA
* **
153836483 TATATATACATACA
1 TATATATATATGTA
* *
153836497 TATATATACATATA
1 TATATATATATGTA
153836511 TATATATATA
1 TATATATATA
153836521 CTTTATACTT
Statistics
Matches: 167, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 167 1.00
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.40
Consensus pattern (14 bp):
TATATATATATGTA
Found at i:153836336 original size:16 final size:16
Alignment explanation
Indices: 153836315--153836520 Score: 106
Period size: 16 Copynumber: 12.9 Consensus size: 16
153836305 CTTCATAGCT
*
153836315 TATATATATGTTTATA
1 TATATATATGTATATA
153836331 TATATATATGTATATA
1 TATATATATGTATATA
* **
153836347 TATGTATATACATATA
1 TATATATATGTATATA
* * *
153836363 TATACATATATATACA
1 TATATATATGTATATA
* ** *
153836379 TACATATACATACATA
1 TATATATATGTATATA
* **
153836395 TATATACATACATATA
1 TATATATATGTATATA
* * * *
153836411 CATACATATATATACA
1 TATATATATGTATATA
* ** *
153836427 TACATATACATACATA
1 TATATATATGTATATA
* *
153836443 TATATACATATATATA
1 TATATATATGTATATA
* * *
153836459 CATACATATATATATA
1 TATATATATGTATATA
* *
153836475 TATACATATATATATA
1 TATATATATGTATATA
* * * *
153836491 CATACATATATATACA
1 TATATATATGTATATA
*
153836507 TATATATATATATA
1 TATATATATGTATA
153836521 CTTTATACTT
Statistics
Matches: 149, Mismatches: 41, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 149 1.00
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.40
Consensus pattern (16 bp):
TATATATATGTATATA
Found at i:153836344 original size:10 final size:10
Alignment explanation
Indices: 153836315--153836376 Score: 60
Period size: 10 Copynumber: 6.6 Consensus size: 10
153836305 CTTCATAGCT
153836315 TATATATATG
1 TATATATATG
153836325 T-T-TATA--
1 TATATATATG
153836331 TATATATATG
1 TATATATATG
153836341 TATATATATG
1 TATATATATG
* *
153836351 TATATACATA
1 TATATATATG
* *
153836361 TATATACATA
1 TATATATATG
153836371 TATATA
1 TATATA
153836377 CATACATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
6 1 0.02
7 1 0.02
8 8 0.17
9 1 0.02
10 35 0.76
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (10 bp):
TATATATATG
Found at i:153836354 original size:24 final size:24
Alignment explanation
Indices: 153836344--153836514 Score: 255
Period size: 24 Copynumber: 7.4 Consensus size: 24
153836334 ATATATGTAT
* * *
153836344 ATATATGTATATACATATATATAC
1 ATATATATACATACATATACATAC
153836368 ATATATATACATACATATACATAC
1 ATATATATACATACATATACATAC
153836392 ATATATATACATACATATACATAC
1 ATATATATACATACATATACATAC
153836416 ATATATATACATACATATACATAC
1 ATATATATACATACATATACATAC
*
153836440 ATATATATACATATATATACATAC
1 ATATATATACATACATATACATAC
153836464 ATATATAT--AT--ATATACAT--
1 ATATATATACATACATATACATAC
*
153836482 ATATATATACATACATATATATAC
1 ATATATATACATACATATACATAC
153836506 ATATATATA
1 ATATATATA
153836515 TATATACTTT
Statistics
Matches: 136, Mismatches: 5, Indels: 12
0.89 0.03 0.08
Matches are distributed among these distances:
18 8 0.06
20 10 0.07
22 9 0.07
24 109 0.80
ACGTcount: A:0.50, C:0.12, G:0.01, T:0.37
Consensus pattern (24 bp):
ATATATATACATACATATACATAC
Found at i:153836377 original size:10 final size:10
Alignment explanation
Indices: 153836328--153836520 Score: 200
Period size: 10 Copynumber: 19.5 Consensus size: 10
153836318 ATATATGTTT
*
153836328 ATATATATAT
1 ATATATATAC
* *
153836338 ATGTATATAT
1 ATATATATAC
*
153836348 ATGTATATAC
1 ATATATATAC
153836358 ATATATATAC
1 ATATATATAC
153836368 ATATATATAC
1 ATATATATAC
153836378 ATACATATACATAC
1 AT--ATAT--ATAC
153836392 ATATATATAC
1 ATATATATAC
*
153836402 ATACATATAC
1 ATATATATAC
*
153836412 ATACATAT--
1 ATATATATAC
*
153836420 ATATACATAC
1 ATATATATAC
*
153836430 ATATACATAC
1 ATATATATAC
153836440 ATATATATAC
1 ATATATATAC
153836450 ATATATATAC
1 ATATATATAC
* *
153836460 ATACATATAT
1 ATATATATAC
153836470 ATATATATAC
1 ATATATATAC
153836480 --ATATAT--
1 ATATATATAC
*
153836486 ATATACATAC
1 ATATATATAC
153836496 ATATATATAC
1 ATATATATAC
*
153836506 ATATATATAT
1 ATATATATAC
153836516 ATATA
1 ATATA
153836521 CTTTATACTT
Statistics
Matches: 159, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
8 17 0.11
10 128 0.81
12 8 0.05
14 6 0.04
ACGTcount: A:0.49, C:0.11, G:0.01, T:0.39
Consensus pattern (10 bp):
ATATATATAC
Found at i:153839502 original size:12 final size:11
Alignment explanation
Indices: 153839470--153839499 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
153839460 ATAGGTTCGT
153839470 GAAAAAAATTC
1 GAAAAAAATTC
*
153839481 GAAAAAAATTT
1 GAAAAAAATTC
153839492 GAAAAAAA
1 GAAAAAAA
153839500 ATTATTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.70, C:0.03, G:0.10, T:0.17
Consensus pattern (11 bp):
GAAAAAAATTC
Found at i:153845473 original size:23 final size:25
Alignment explanation
Indices: 153845446--153845500 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
153845436 ATTTTAATCC
153845446 TTTTAAATATTTT-TATATAATTTA
1 TTTTAAATATTTTATATATAATTTA
*
153845470 TTTATTAAATATTTTATATATTATTTA
1 -TT-TTAAATATTTTATATATAATTTA
153845497 TTTT
1 TTTT
153845501 TTACTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 4 0.15
26 13 0.48
27 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTAAATATTTTATATATAATTTA
Found at i:153845491 original size:16 final size:16
Alignment explanation
Indices: 153845466--153845559 Score: 57
Period size: 16 Copynumber: 5.6 Consensus size: 16
153845456 TTTTATATAA
*
153845466 TTTATTTATTAAATAT
1 TTTATATATTAAATAT
**
153845482 TTTATATATTATTTAT
1 TTTATATATTAAATAT
* *
153845498 TTTTTACTA-TAAACATT
1 TTTATA-TATTAAATA-T
*
153845515 ATTTATATATGTAAAGAT
1 -TTTATATAT-TAAATAT
*
153845533 TATTATATATTATATCAT
1 T-TTATATATTAAAT-AT
153845551 TTTAT-TATT
1 TTTATATATT
153845560 TATTATTCAT
Statistics
Matches: 60, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
16 25 0.42
17 13 0.22
18 17 0.28
19 5 0.08
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTATATATTAAATAT
Found at i:153845497 original size:27 final size:26
Alignment explanation
Indices: 153845448--153845499 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
153845438 TTTAATCCTT
153845448 TTAAATATTTTTATATAATTTATTTA
1 TTAAATATTTTTATATAATTTATTTA
*
153845474 TTAAATATTTTATATATTATTTATTT
1 TTAAATATTTT-TATATAATTTATTT
153845500 TTTACTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
TTAAATATTTTTATATAATTTATTTA
Found at i:153845540 original size:18 final size:19
Alignment explanation
Indices: 153845507--153845542 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
153845497 TTTTTTACTA
153845507 TAAACATTATTTATATATG
1 TAAACATTATTTATATATG
*
153845526 TAAAGATTA-TTATATAT
1 TAAACATTATTTATATAT
153845543 TATATCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (19 bp):
TAAACATTATTTATATATG
Found at i:153845555 original size:20 final size:19
Alignment explanation
Indices: 153845532--153845570 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
153845522 TATGTAAAGA
153845532 TTATTATATATTATATCATT
1 TTATTATATATTAT-TCATT
*
153845552 TTATTATTTATTATTCATT
1 TTATTATATATTATTCATT
153845571 AATTATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTATATATTATTCATT
Found at i:153852447 original size:40 final size:40
Alignment explanation
Indices: 153852390--153852639 Score: 321
Period size: 40 Copynumber: 6.3 Consensus size: 40
153852380 CTAACGGGGT
* * *
153852390 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
153852430 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
153852470 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
153852510 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
153852550 TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
153852590 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
153852628 TAAATCCCGAAG
1 TAAGTCCCGAAG
153852640 ATACTTGGGT
Statistics
Matches: 194, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 164 0.85
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:153852523 original size:80 final size:80
Alignment explanation
Indices: 153852390--153852639 Score: 355
Period size: 80 Copynumber: 3.1 Consensus size: 80
153852380 CTAACGGGGT
* *
153852390 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
153852455 TTACTA-ATTCCGGGC
66 TTACTATA-TCCGGGC
* *
153852470 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
153852535 TTACTATATCCGGGC
66 TTACTATATCCGGGC
* * *
153852550 TAAGTCCCGAAGGCATTTGTGCTAGTGACT-ATATCCGGGCTAAGACCCGACGGC-CTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
***
153852613 GTGGTTATATCC-GGC
65 GTTACTATATCCGGGC
*
153852628 TAAATCCCGAAG
1 TAAGTCCCGAAG
153852640 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
78 14 0.09
79 19 0.12
80 121 0.78
81 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATATCCGGGC
Found at i:153864587 original size:40 final size:40
Alignment explanation
Indices: 153864530--153864812 Score: 395
Period size: 40 Copynumber: 7.2 Consensus size: 40
153864520 CTAACGGGGT
* * * *
153864530 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
153864570 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
153864610 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
153864650 TAAGTCCCGAAGGCATTTGTGC--G-----AATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
153864683 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
153864723 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
153864763 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
*
153864803 TAAGACCCGA
1 TAAGTCCCGA
153864813 CGTCCTTGTG
Statistics
Matches: 223, Mismatches: 11, Indels: 18
0.88 0.04 0.07
Matches are distributed among these distances:
33 31 0.14
35 1 0.00
38 1 0.00
39 2 0.01
40 188 0.84
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:153864735 original size:113 final size:113
Alignment explanation
Indices: 153864560--153864784 Score: 434
Period size: 113 Copynumber: 2.0 Consensus size: 113
153864550 GCTAGTGATT
153864560 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
153864625 TTTGTGCGAGTTACTA-ATTCTGGGCTAAGTCCCGAAGGCATTTGTGCG
66 TTTGTGCGAGTTACTATA-TCTGGGCTAAGTCCCGAAGGCATTTGTGCG
153864673 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
1 AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
153864738 TTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGC
66 TTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGC
153864785 TAGTGACCAT
Statistics
Matches: 111, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
113 110 0.99
114 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (113 bp):
AATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCG
Found at i:153864812 original size:153 final size:153
Alignment explanation
Indices: 153864530--153864812 Score: 444
Period size: 153 Copynumber: 1.8 Consensus size: 153
153864520 CTAACGGGGT
* *
153864530 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* * * *
153864595 TTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGTCCCGA
66 TTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATTCCGGGCTAAGACCCGA
153864660 AGGCATTTGTGCGAATTCCGGGC
131 AGGCATTTGTGCGAATTCCGGGC
* *
153864683 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
* *
153864748 TTACT-ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC-ATATCCGGGCTAAGACCC
66 TTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAT-TCCGGGCTAAGACCC
153864811 GA
129 GA
153864813 CGTCCTTGTG
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
152 4 0.03
153 114 0.97
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (153 bp):
TAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATTCCGGGCTAAGACCCGA
AGGCATTTGTGCGAATTCCGGGC
Found at i:153866681 original size:39 final size:40
Alignment explanation
Indices: 153866638--153866746 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
153866628 TTCACAATTT
*
153866638 GCACAAATG-CTTCGGGTCTTAGCCCGGATGTAGTCACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
153866677 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
153866717 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
153866747 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 8 0.13
40 52 0.87
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:153873458 original size:40 final size:40
Alignment explanation
Indices: 153873392--153873558 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
153873382 AAATTGAATG
* * *
153873392 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
153873431 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
153873471 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
153873511 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
153873551 ATATCCGG
1 ATATCCGG
153873559 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:153876766 original size:40 final size:40
Alignment explanation
Indices: 153876669--153876924 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
153876659 AAGCCAAGTA
* * *
153876669 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
153876707 CCTT-GGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
153876746 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
153876786 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
153876826 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
153876866 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
153876906 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
153876925 TTATCATCCG
Statistics
Matches: 198, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
37 7 0.04
38 21 0.11
39 8 0.04
40 162 0.82
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:153891717 original size:21 final size:22
Alignment explanation
Indices: 153891691--153891732 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
153891681 CTCTTGAAAT
153891691 AGGGGTG-CACGCAT-GTGTGGA
1 AGGGGTGACACGC-TCGTGTGGA
153891712 AGGGGTGACACGCTCGTGTGG
1 AGGGGTGACACGCTCGTGTGG
153891733 CCTTCTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.17, C:0.17, G:0.48, T:0.19
Consensus pattern (22 bp):
AGGGGTGACACGCTCGTGTGGA
Found at i:153893170 original size:49 final size:47
Alignment explanation
Indices: 153893112--153893436 Score: 238
Period size: 49 Copynumber: 6.8 Consensus size: 47
153893102 CATGCATCGA
*
153893112 GGCCAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCACTTATCT
* *
153893160 GTGTCGATGCCATGTCCCAGACAGGTCTTACACT-GACTTC-CATATATCAA
1 G-GCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTTCAC-T-TATC-T
* ** * * *
153893210 GGCCAATGCCACATCCTAGACAGATCTTACACTGGCTCTCACTTATCT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCACTTATCT
** * * * *
153893258 GTGTTGATGCCATGTCCTAGACAGGTCTTACACATA-C-ACAC--CTCA
1 G-GCCGATGCCATGTCCCAGACAGGTCTTACAC-TAGCTTCACTTATCT
*
153893303 AGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCA--TATCTT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-CACTTATC-T
* * * *
153893350 GAGGCCGATTCCGTGTCCCAAACAGGTCTTACACTGGCTCTCA-TCTAT-T
1 --GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCACT-TATCT
*
153893399 GGCACAGAAGCCATGTCCCAGACAGGTCTTACACTAGC
1 GGC-C-GATGCCATGTCCCAGACAGGTCTTACACTAGC
153893437 AAACACATCA
Statistics
Matches: 218, Mismatches: 37, Indels: 43
0.73 0.12 0.14
Matches are distributed among these distances:
43 2 0.01
44 29 0.13
45 2 0.01
46 4 0.02
47 7 0.03
48 7 0.03
49 156 0.72
50 7 0.03
51 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCACTTATCT
Found at i:153893238 original size:98 final size:98
Alignment explanation
Indices: 153893068--153893339 Score: 311
Period size: 98 Copynumber: 2.8 Consensus size: 98
153893058 ATCTAATTCA
* * * * * * * **
153893068 ATGCCATGTCCCAAACAGGTATGAAATTGACTTCCATGCATCGAGGCCAATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCACATCCCAGAC
*
153893133 AGGTCTTACACTAGCTCTCACTTATCTGTGTCG
66 AGATCTTACACTAGCTCTCACTTATCTGTGTCG
* *
153893166 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACATCCTAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCACATCCCAGAC
* *
153893231 AGATCTTACACTGGCTCTCACTTATCTGTGTTG
66 AGATCTTACACTAGCTCTCACTTATCTGTGTCG
* * * * * **
153893264 ATGCCATGTCCTAGACAGGTCTTACAC--A--TACACACCTCAA-GCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCACATCCCAGAC
*
153893324 AGGTCTTACACTAGCT
66 AGATCTTACACTAGCT
153893340 TGCATATCTT
Statistics
Matches: 149, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
93 30 0.20
94 8 0.05
96 1 0.01
98 110 0.74
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (98 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCACATCCCAGAC
AGATCTTACACTAGCTCTCACTTATCTGTGTCG
Found at i:153893412 original size:142 final size:142
Alignment explanation
Indices: 153893164--153893432 Score: 330
Period size: 142 Copynumber: 1.9 Consensus size: 142
153893154 TTATCTGTGT
* *
153893164 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACATCCTAG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACATCCCAA
** * *
153893229 ACAGATCTTACACTGGCTCTCACTTATCTGTGTTGATGCCATGTCCTAGACAGGTCTTACACATA
66 ACAGATCTTACACTGGCTCTCACTTATCTGTGCAGAAGCCATGTCCCAGACAGGTCTTACACATA
153893294 CACACCTCAAGC
131 CACACCTCAAGC
* * ** * * ***
153893306 CGATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTTGAGGCCGATTCCGTGTCCCA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATATATCAAGGCCAATGCCACATCCCA
*
153893370 AACAGGTCTTACACTGGCTCTCA-TCTAT-TG-GCACAGAAGCCATGTCCCAGACAGGTCTTACA
65 AACAGATCTTACACTGGCTCTCACT-TATCTGTG--CAGAAGCCATGTCCCAGACAGGTCTTACA
153893432 C
127 C
153893433 TAGCAAACAC
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
140 1 0.01
141 4 0.04
142 102 0.95
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (142 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACATCCCAA
ACAGATCTTACACTGGCTCTCACTTATCTGTGCAGAAGCCATGTCCCAGACAGGTCTTACACATA
CACACCTCAAGC
Found at i:153894949 original size:13 final size:13
Alignment explanation
Indices: 153894931--153894960 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
153894921 TTATAACATC
153894931 TCCAAAATAAATG
1 TCCAAAATAAATG
153894944 TCC-AAATAAATG
1 TCCAAAATAAATG
153894956 TCCAA
1 TCCAA
153894961 TGTCCATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (13 bp):
TCCAAAATAAATG
Found at i:153895907 original size:5 final size:5
Alignment explanation
Indices: 153895897--153895929 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
153895887 AATGCTATTG
153895897 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAA
153895930 GATGTGATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:153900262 original size:40 final size:40
Alignment explanation
Indices: 153900217--153900346 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
153900207 CGGAATACAA
153900217 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
153900257 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
153900297 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
153900337 CCGGATATAA
1 CCGGATATAA
153900347 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:153902383 original size:19 final size:19
Alignment explanation
Indices: 153902359--153902398 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
153902349 TCAAGAGTAT
153902359 TTACAAGTGTATAATTGTG
1 TTACAAGTGTATAATTGTG
153902378 TTACAAGTGTATAATTGTG
1 TTACAAGTGTATAATTGTG
153902397 TT
1 TT
153902399 TTACTTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (19 bp):
TTACAAGTGTATAATTGTG
Found at i:153914342 original size:30 final size:30
Alignment explanation
Indices: 153914308--153914365 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
153914298 CACGGTCATG
*
153914308 ACACACGGGCATGTGG-TCTACCCGTGTGTC
1 ACACACAGGCATGTGGATC-ACCCGTGTGTC
*
153914338 ACACACAGGCGTGTGGATCACCCGTGTG
1 ACACACAGGCATGTGGATCACCCGTGTG
153914366 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (30 bp):
ACACACAGGCATGTGGATCACCCGTGTGTC
Found at i:153918767 original size:27 final size:27
Alignment explanation
Indices: 153918712--153918821 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
153918702 AGCACGGCTG
* **
153918712 CCAGAACAGATAA-TGTGACAGAGTTA
1 CCAGAACAGATAATTGTGGCAGAGCCA
153918738 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
153918765 CCAGAACAGAT-ATATGTAGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
153918792 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
153918819 CCA
1 CCA
153918822 TGACGCTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.77
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:153918803 original size:54 final size:53
Alignment explanation
Indices: 153918712--153918821 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
153918702 AGCACGGCTG
**
153918712 CCAGAACAGATAATGTGACAGAGTTACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * * *
153918765 CCAGAACAGATATATGT-AGTAGAGCCACCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGA-CAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
153918819 CCA
1 CCA
153918822 TGACGCTTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
53 13 0.27
54 36 0.73
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:153923868 original size:34 final size:34
Alignment explanation
Indices: 153923817--153923900 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
153923807 GCAGTGTAAA
* * *
153923817 CAGTCTGGGCCTAAGCCC-TTATCAGTAGCAATAT
1 CAGTATGGGCCTTAGCCCATTA-CAGTAACAATAT
*
153923851 CAGTATGGGCCTTAGCCCATTACAGTAACAGTAT
1 CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
* * *
153923885 CAATGTGGACCTTAGC
1 CAGTATGGGCCTTAGC
153923901 GTAATTCAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 39 0.93
35 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
Found at i:153927949 original size:27 final size:27
Alignment explanation
Indices: 153927919--153927972 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
153927909 TCATACAACC
* *
153927919 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
153927946 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
153927973 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:153930851 original size:93 final size:93
Alignment explanation
Indices: 153930739--153930909 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
153930729 GCCCATAAGT
* *
153930739 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
153930804 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
153930832 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
153930897 CGAGTTCGGATGC
66 CGAGTTCGGATGC
153930910 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:153930925 original size:46 final size:46
Alignment explanation
Indices: 153930731--153930911 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
153930721 TGTAACCCGC
* * *
153930731 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
153930777 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
153930827 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
153930870 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
153930912 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:153931110 original size:29 final size:31
Alignment explanation
Indices: 153931045--153931111 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
153931035 TCAAGTATTC
*
153931045 ACATAATTTACATATTATAAATTAACCACAA
1 ACATAATTTACATAATATAAATTAACCACAA
* * *
153931076 AGCATAATTT-CATAATA-AAATTCAGCATAA
1 A-CATAATTTACATAATATAAATTAACCACAA
153931106 ACATAA
1 ACATAA
153931112 AATCAATAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 5 0.16
30 11 0.35
31 7 0.23
32 8 0.26
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30
Consensus pattern (31 bp):
ACATAATTTACATAATATAAATTAACCACAA
Found at i:153933310 original size:29 final size:29
Alignment explanation
Indices: 153933271--153933358 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
153933261 CAAAGATAAC
*
153933271 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
153933300 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
153933329 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
153933359 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:153933329 original size:15 final size:15
Alignment explanation
Indices: 153933271--153933349 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
153933261 CAAAGATAAC
*
153933271 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
153933285 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
153933300 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
153933314 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
153933329 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
153933344 AAGAAA
1 AAGAAA
153933350 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:153933358 original size:15 final size:15
Alignment explanation
Indices: 153933282--153933358 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
153933272 AGAAAACCGA
153933282 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
153933297 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
153933311 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
153933325 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
153933341 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
153933356 ATA
1 ATA
153933359 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:153936368 original size:93 final size:93
Alignment explanation
Indices: 153936256--153936426 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
153936246 GCCCATAAGT
* *
153936256 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
153936321 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
153936349 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
153936414 CGAGTTCGGATGC
66 CGAGTTCGGATGC
153936427 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:153936442 original size:46 final size:46
Alignment explanation
Indices: 153936248--153936428 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
153936238 TGTAACCCGC
* * *
153936248 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
153936294 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
153936344 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
153936387 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
153936429 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:153938316 original size:27 final size:27
Alignment explanation
Indices: 153938286--153938399 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
153938276 TCGATTTGTG
153938286 AAATGACCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCTGTAGGGTA
* * *
153938313 AAATGACCGTAATACCCCAGTATGGTA
1 AAATGACCGAAATACCCCTGTAGGGTA
* * * *
153938340 AAATGACTGTAATGCCCCTGTAGGGAA
1 AAATGACCGAAATACCCCTGTAGGGTA
*
153938367 AAATGACCGTAAA-ACCCCTGTATGGTA
1 AAATGACCG-AAATACCCCTGTAGGGTA
*
153938394 GAATGA
1 AAATGA
153938400 TGATTATGCC
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 70 0.97
28 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTGTAGGGTA
Found at i:153938410 original size:54 final size:54
Alignment explanation
Indices: 153938286--153938399 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
153938276 TCGATTTGTG
* * * * *
153938286 AAATGACCGAAATACCCCTGTAGGGTAAAATGACCGTAATACCCCAGTATGGTA
1 AAATGACTGTAATGCCCCTGTAGGGAAAAATGACCGTAAAACCCCAGTATGGTA
*
153938340 AAATGACTGTAATGCCCCTGTAGGGAAAAATGACCGTAAAACCCCTGTATGGTA
1 AAATGACTGTAATGCCCCTGTAGGGAAAAATGACCGTAAAACCCCAGTATGGTA
*
153938394 GAATGA
1 AAATGA
153938400 TGATTATGCC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (54 bp):
AAATGACTGTAATGCCCCTGTAGGGAAAAATGACCGTAAAACCCCAGTATGGTA
Found at i:153938572 original size:27 final size:27
Alignment explanation
Indices: 153938541--153938620 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
153938531 GGAAGTTCTG
*
153938541 TACTGGTGACTATGTCAC-ATTCACT-A
1 TACTGGTGACTATGCCACAATT-ACTGA
*
153938567 TTACTGGTGGCTATGCCACAATTACTGA
1 -TACTGGTGACTATGCCACAATTACTGA
* * *
153938595 TACTGGTGTCTTTGCCACACTTACTG
1 TACTGGTGACTATGCCACAATTACTG
153938621 TTCTGGCAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 42 0.91
28 4 0.09
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTGGTGACTATGCCACAATTACTGA
Found at i:153940629 original size:27 final size:27
Alignment explanation
Indices: 153940599--153940710 Score: 88
Period size: 27 Copynumber: 4.2 Consensus size: 27
153940589 CATTTCAGTC
*
153940599 ATTTTACCCTACAGGGGTATTTTGGTA
1 ATTTTACACTACAGGGGTATTTTGGTA
* *
153940626 ATTTCACA-AATC-GAGGGTATTTTGGTA
1 ATTTTACACTA-CAG-GGGTATTTTGGTA
* *
153940653 ATTTTACACTACAAGGGCT-TTCT-GTA
1 ATTTTACACTAC-AGGGGTATTTTGGTA
* * * *
153940679 ATTTTGCACTATAGGGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTTGGTA
153940706 ATTTT
1 ATTTT
153940711 TTACTTCAAG
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
25 5 0.08
26 17 0.26
27 38 0.58
28 4 0.06
29 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTTGGTA
Found at i:153940697 original size:53 final size:53
Alignment explanation
Indices: 153940640--153940750 Score: 136
Period size: 53 Copynumber: 2.1 Consensus size: 53
153940630 CACAAATCGA
* *
153940640 GGGTATTTTGGTAATTTTACACTACAAGGGCT-TTCTG-TAATTTTGCACTATAG
1 GGGTATTTCGATAATTTTACACTACAAGGG-TATTC-GATAATTTTGCACTATAG
** *
153940693 GGGTATTTCGATAATTTTTTACTTCAAGGGTAGTTCGATAATTTTGCACTATAG
1 GGGTATTTCGATAATTTTACACTACAAGGGTA-TTCGATAATTTTGCACTATAG
153940747 GGGT
1 GGGT
153940751 CCTAACGACC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
52 1 0.02
53 26 0.52
54 23 0.46
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (53 bp):
GGGTATTTCGATAATTTTACACTACAAGGGTATTCGATAATTTTGCACTATAG
Found at i:153940750 original size:27 final size:27
Alignment explanation
Indices: 153940677--153940750 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
153940667 GGGCTTTCTG
*
153940677 TAATTTTGCACTATAGGGGTATTTCGA
1 TAATTTTGCACTATAGGGGTAGTTCGA
** *
153940704 TAATTTTTTACT-TCAAGGGTAGTTCGA
1 TAATTTTGCACTAT-AGGGGTAGTTCGA
153940731 TAATTTTGCACTATAGGGGT
1 TAATTTTGCACTATAGGGGT
153940751 CCTAACGACC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.42
Consensus pattern (27 bp):
TAATTTTGCACTATAGGGGTAGTTCGA
Found at i:153943565 original size:46 final size:44
Alignment explanation
Indices: 153943473--153943585 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 44
153943463 GCCAATGCCG
*
153943473 TGTCCTAGACATGGTCTTACATTGACACATCTCGTAGCCGATGCA
1 TGTCCTAGACAT-GTCTTACACTGACACATCTCGTAGCCGATGCA
* * *
153943518 TGTCCTAGACATGTCCTACACTGACTTACGTCTCG-AGGCTGATGCA
1 TGTCCTAGACATGTCTTACACTGAC--ACATCTCGTA-GCCGATGCA
*
153943564 TGTCCGAGACATGTCTTACACT
1 TGTCCTAGACATGTCTTACACT
153943586 ATCCCAATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 11 0.19
45 13 0.22
46 35 0.59
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (44 bp):
TGTCCTAGACATGTCTTACACTGACACATCTCGTAGCCGATGCA
Found at i:153947774 original size:40 final size:39
Alignment explanation
Indices: 153947700--153947924 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 39
153947690 AACCCAAGTA
* *
153947700 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
* *
153947739 CCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * *
153947779 CCTTCAGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
*
153947822 CCTTCGGGACTTTGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * * *
153947862 CCTTCGGGACTTAGCCCAGATATAGGAACTCGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
153947902 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
153947925 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 13 0.08
40 109 0.69
41 2 0.01
43 34 0.21
44 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:153947820 original size:83 final size:80
Alignment explanation
Indices: 153947700--153947924 Score: 299
Period size: 83 Copynumber: 2.8 Consensus size: 80
153947690 AACCCAAGTA
* * * * * * *
153947700 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAG
1 CCTTCAGGACTTAGCCCAGATATAGAAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAG
153947764 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * * *
153947779 CCTTCAGGACTTAGCCCGGGTATAGCAACTACTCGTACAAATGCCTTCGGGACTTTGCCCGGATA
1 CCTTCAGGACTTAGCCCAGATATAG-AA--ACTCGAACAAATGCCTTCGGGACTTAGCCCGGATA
153947844 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* *
153947862 CCTTCGGGACTTAGCCCAGATATAGGAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCAGGACTTAGCCCAGATATAGAAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATAT
153947925 CATCCGAATA
Statistics
Matches: 128, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 12 0.09
80 43 0.34
81 1 0.01
82 1 0.01
83 71 0.55
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCAGGACTTAGCCCAGATATAGAAACTCGAACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:153959793 original size:40 final size:40
Alignment explanation
Indices: 153959738--153959947 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
153959728 GAACATTGAA
153959738 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
153959778 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
153959818 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
153959858 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
153959897 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
153959938 CTATATCCGG
1 ATATATCCGG
153959948 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:153967987 original size:31 final size:31
Alignment explanation
Indices: 153967949--153968012 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
153967939 CCTTTTCATA
153967949 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
153967980 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
153968011 TT
1 TT
153968013 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:153968250 original size:24 final size:24
Alignment explanation
Indices: 153968204--153968322 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
153968194 GCTTTATCAT
*
153968204 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
153968229 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
153968253 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
153968276 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
153968300 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153968323 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:153968283 original size:47 final size:48
Alignment explanation
Indices: 153968204--153968322 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
153968194 GCTTTATCAT
*
153968204 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
153968253 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
153968300 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153968323 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 2 0.03
47 43 0.65
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:153968398 original size:20 final size:20
Alignment explanation
Indices: 153968373--153968432 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
153968363 TATGATTACC
153968373 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
153968393 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
153968413 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
153968433 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:153968507 original size:25 final size:25
Alignment explanation
Indices: 153968475--153968522 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
153968465 ATACATAAAC
* * *
153968475 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
153968500 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
153968523 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:153976276 original size:31 final size:31
Alignment explanation
Indices: 153976238--153976301 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
153976228 CCTTTTCATA
153976238 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
153976269 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
153976300 TT
1 TT
153976302 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:153976539 original size:24 final size:24
Alignment explanation
Indices: 153976493--153976610 Score: 145
Period size: 23 Copynumber: 5.0 Consensus size: 24
153976483 GCTTTATCAT
*
153976493 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
153976518 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
153976542 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
153976565 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
153976589 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153976611 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
23 39 0.46
24 32 0.38
25 13 0.15
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:153976572 original size:47 final size:48
Alignment explanation
Indices: 153976493--153976610 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
153976483 GCTTTATCAT
*
153976493 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
153976542 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
153976589 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
153976611 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
46 18 0.28
47 26 0.40
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:153976693 original size:20 final size:20
Alignment explanation
Indices: 153976661--153976726 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
153976651 TATGATTACC
*
153976661 TCATGTGCATATCATACATA
1 TCATATGCATATCATACATA
* *
153976681 TCATATGCGTATCATACATT
1 TCATATGCATATCATACATA
* *
153976701 TCATGTGCATATCATGCATA
1 TCATATGCATATCATACATA
*
153976721 CCATAT
1 TCATAT
153976727 TTATCAAAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
TCATATGCATATCATACATA
Found at i:153976795 original size:25 final size:25
Alignment explanation
Indices: 153976763--153976810 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
153976753 ATACATAAAC
* * *
153976763 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
153976788 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
153976811 CATATTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:153981460 original size:25 final size:25
Alignment explanation
Indices: 153981431--153981478 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
153981421 TTATAATATG
* * *
153981431 AAAATAACCGTTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
*
153981456 AAAATGACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
153981479 GTTTATACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:153981549 original size:9 final size:9
Alignment explanation
Indices: 153981517--153981593 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
153981507 TTTGATAAAC
153981517 ATGATATGT
1 ATGATATGT
* *
153981526 ATGGTATGCAC
1 ATGATATG--T
153981537 ATGATATGT
1 ATGATATGT
*
153981546 ATGATATGCAC
1 ATGATATG--T
*
153981557 ATGACATGT
1 ATGATATGT
*
153981566 ATGATATGCAC
1 ATGATATG--T
153981577 ATGATATGT
1 ATGATATGT
153981586 ATGATATG
1 ATGATATG
153981594 CACACGAGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:153981605 original size:20 final size:20
Alignment explanation
Indices: 153981515--153981597 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
153981505 ATTTTGATAA
*
153981515 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
153981535 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
153981555 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
153981575 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
153981595 ACA
1 ACA
153981598 CGAGATGTTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:153981772 original size:23 final size:24
Alignment explanation
Indices: 153981651--153981792 Score: 202
Period size: 23 Copynumber: 6.0 Consensus size: 24
153981641 GAGGAAGTGC
153981651 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
153981675 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
153981698 -AAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
153981721 ATAAAGGGCTTATGCCCCAGTTGTT
1 A-AAAGGGCTTATGCCCCAGTTATT
153981746 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
153981769 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
153981793 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 63 0.58
24 15 0.14
25 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:153981789 original size:48 final size:48
Alignment explanation
Indices: 153981651--153981792 Score: 202
Period size: 48 Copynumber: 3.0 Consensus size: 48
153981641 GAGGAAGTGC
153981651 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
153981698 -AAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATTA-AAAGGGCTTATGCCCCAGTTATT
*
153981746 AAAAGGGCTT-TGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
153981793 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
46 22 0.26
47 9 0.11
48 45 0.53
49 9 0.11
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:153982022 original size:31 final size:31
Alignment explanation
Indices: 153981987--153982051 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
153981977 CGTTTACAGT
153981987 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
**
153982018 AAAGGCTTCGGCCCAATGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
153982049 AAA
1 AAA
153982052 AGGGCTATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:153983018 original size:48 final size:48
Alignment explanation
Indices: 153982945--153983103 Score: 174
Period size: 48 Copynumber: 3.3 Consensus size: 48
153982935 CTAAGTGCTC
** * ** * * *
153982945 ATATCATGATCCGAAGCCAACTTAATGTATCTCGCACCCGAAGTACTA
1 ATATCATGGCCCGAAGCCAAATTAATAAAGCTCGCACCCAAAGTACTG
* *
153982993 ATATCATGGCCCGAAGCCAAATTAATAAAGCTTGCACCCAAAGTGCTG
1 ATATCATGGCCCGAAGCCAAATTAATAAAGCTCGCACCCAAAGTACTG
* * * *
153983041 ATATCATGGTCCGAAGACAAATCAATAAAGCTCGCACCTAAAGTACTG
1 ATATCATGGCCCGAAGCCAAATTAATAAAGCTCGCACCCAAAGTACTG
**
153983089 ATATTGTGGCCCGAA
1 ATATCATGGCCCGAA
153983104 TCCATCAAAG
Statistics
Matches: 92, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (48 bp):
ATATCATGGCCCGAAGCCAAATTAATAAAGCTCGCACCCAAAGTACTG
Done.