Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 499 of 770
Found at i:154369241 original size:117 final size:118
Alignment explanation
Indices: 154369031--154369253 Score: 342
Period size: 117 Copynumber: 1.9 Consensus size: 118
154369021 ATGTGCGAAT
*
154369031 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGG
1 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGAGCTAAGCCCGAAGG
*** *
154369096 CAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATGGTGCGAGC
66 CAATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATGGTGCGAGC
*
154369148 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGAGTTAAGTCCCGAAG
1 TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGAGCTAAG-CCCGAAG
* * *
154369213 GCATTTGTGCGGGTTACCATAACC-GGCTATGTCCCGAAGGC
65 GCAATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGC
154369254 GTTTGAACGA
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
117 61 0.64
118 34 0.36
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (118 bp):
TATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGAGCTAAGCCCGAAGG
CAATTGTGCGAGTTACCATAACCGGGCTAAGTCCCGAAGGCAATGGTGCGAGC
Found at i:154376481 original size:39 final size:39
Alignment explanation
Indices: 154376437--154376638 Score: 323
Period size: 39 Copynumber: 5.2 Consensus size: 39
154376427 TGTGTATGAA
* *
154376437 TGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
154376476 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
154376515 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154376554 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154376593 TGTGCGAGTTGTGATATCCGAGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
154376633 TGTGCG
1 TGTGCG
154376639 GGTTACCATA
Statistics
Matches: 151, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 134 0.89
40 17 0.11
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:154384236 original size:48 final size:48
Alignment explanation
Indices: 154384161--154384300 Score: 217
Period size: 48 Copynumber: 2.9 Consensus size: 48
154384151 TAGGGTTATG
*
154384161 TGTGATCCCATATAAGATCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
154384209 TGTGATCCCATGTAAGACCATGCCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
154384257 TGTGATCCCATATAAGACCATATTTGGGATACGGCATTGGCATC
1 TGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
154384301 AAAATGAGAA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:154384325 original size:96 final size:91
Alignment explanation
Indices: 154384161--154384391 Score: 239
Period size: 96 Copynumber: 2.5 Consensus size: 91
154384151 TAGGGTTATG
* * * * * * **
154384161 TGTGATCCCATATAAGATCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGA
1 TGTGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATCAAAATGAGAAACCATGTAAGA
*
154384226 CCAT-GCCTGGGACATGGCATTGGCATCGATA
66 CCATAG-CTGGG-C-T---ATCGGCATCGATA
* * * *
154384257 TGTGATCCCATATAAGACCATATTTGGGATACGGCATTGGCATCAAAATGAGAAATCGTGTAAGA
1 TGTGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATCAAAATGAGAAACCATGTAAGA
* *
154384322 CCATAGCTGGGCTATCGGCTTCGATC
66 CCATAGCTGGGCTATCGGCATCGATA
* * *
154384348 TGTGGTCCCATGTAAGACCATATCAGGGATATGGCATTGGCATC
1 TGTGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATC
154384392 TTAATATGTG
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
91 49 0.43
94 1 0.01
95 1 0.01
96 62 0.54
97 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (91 bp):
TGTGATCCCATATAAGACCATATCTGGGATATGGCATTGGCATCAAAATGAGAAACCATGTAAGA
CCATAGCTGGGCTATCGGCATCGATA
Found at i:154386127 original size:32 final size:32
Alignment explanation
Indices: 154386086--154386150 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
154386076 GATTAAATTG
154386086 TTAAATGTATAAATACATGGGCTTTTGTGAAT
1 TTAAATGTATAAATACATGGGCTTTTGTGAAT
154386118 TTAAATGTATAAATACATGGGCTTTTGTGAAT
1 TTAAATGTATAAATACATGGGCTTTTGTGAAT
154386150 T
1 T
154386151 GTTGGTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (32 bp):
TTAAATGTATAAATACATGGGCTTTTGTGAAT
Found at i:154388333 original size:26 final size:26
Alignment explanation
Indices: 154388274--154388378 Score: 146
Period size: 26 Copynumber: 4.2 Consensus size: 26
154388264 GGCCTATCCT
154388274 CTTTT-AAT-AACTGGGGCA-AAG-C
1 CTTTTCAATAAACTGGGGCATAAGCC
**
154388296 CTTTTCGGTAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
154388322 CTTTTCAATAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
* *
154388348 CTTTTCAGTAAACTGGGGGATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
154388374 CTTTT
1 CTTTT
154388379 TCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
22 5 0.07
23 1 0.01
24 10 0.14
25 3 0.04
26 54 0.74
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTTTCAATAAACTGGGGCATAAGCC
Found at i:154388453 original size:20 final size:21
Alignment explanation
Indices: 154388428--154388484 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
154388418 TTATGATTAC
*
154388428 ATCATGTGCATTTCATA-CAT
1 ATCATGTGCATATCATATCAT
154388448 ATCATGTGCATATCATATCAT
1 ATCATGTGCATATCATATCAT
154388469 -TCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
154388485 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.63
21 3 0.09
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAT
Found at i:154389881 original size:16 final size:16
Alignment explanation
Indices: 154389856--154389887 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
154389846 CGGCACAAGT
*
154389856 GAAAAGAAAAAGAGAA
1 GAAAAAAAAAAGAGAA
154389872 GAAAAAAAAAAGAGAA
1 GAAAAAAAAAAGAGAA
154389888 AAATGCCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
GAAAAAAAAAAGAGAA
Found at i:154398206 original size:40 final size:40
Alignment explanation
Indices: 154398151--154398360 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
154398141 AACATTGGAA
154398151 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154398191 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154398231 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
154398271 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
154398310 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
154398351 CTATATCCGG
1 ATATATCCGG
154398361 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:154406946 original size:32 final size:32
Alignment explanation
Indices: 154406910--154407088 Score: 234
Period size: 32 Copynumber: 5.6 Consensus size: 32
154406900 TAAAAGGGTG
*
154406910 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154406942 ACACTTG-AAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
154406973 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
154407005 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
154407037 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154407069 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
154407089 GCACCTCGGG
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
31 30 0.24
32 81 0.64
33 16 0.13
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.31
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:154415623 original size:32 final size:32
Alignment explanation
Indices: 154415587--154415766 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
154415577 TAAAAGGGTG
*
154415587 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154415619 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
154415651 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
154415683 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
154415715 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154415747 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
154415767 GCACCTCGGG
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 113 0.88
33 16 0.12
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:154424311 original size:32 final size:32
Alignment explanation
Indices: 154424275--154424454 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
154424265 TAAAAGGGTG
*
154424275 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154424307 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
154424339 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
154424371 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
154424403 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154424435 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
154424455 GCACCTCGGG
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 113 0.88
33 16 0.12
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:154425527 original size:97 final size:96
Alignment explanation
Indices: 154425362--154425555 Score: 370
Period size: 97 Copynumber: 2.0 Consensus size: 96
154425352 CCTTGGCCGT
154425362 GTGAGAGACACGGTCTAGGGACATGGCATGTGCCCTGGCCGTGTGAAGTTTGTAGCTACTTTTGA
1 GTGAGAGACACGGTCTAGGGACATGGCATGTGCCCTGGCCGTGTGAAGTTTGTAGCTACTTTTGA
*
154425427 GGAATTAATTTACTACATGGCCTAAGCACAC
66 GGAATTAATTTACTACACGGCCTAAGCACAC
154425458 GTGAGAGACACGGTCTAGGGACATGGGCATGTGCCCTGGCCGTGTGAAGTTTGTAGCTACTTTTG
1 GTGAGAGACACGGTCTAGGGACAT-GGCATGTGCCCTGGCCGTGTGAAGTTTGTAGCTACTTTTG
154425523 AGGAATTAATTTACTACACGGCCTAAGCACAC
65 AGGAATTAATTTACTACACGGCCTAAGCACAC
154425555 G
1 G
154425556 GGTGTGTGCC
Statistics
Matches: 96, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
96 24 0.25
97 72 0.75
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGAGAGACACGGTCTAGGGACATGGCATGTGCCCTGGCCGTGTGAAGTTTGTAGCTACTTTTGA
GGAATTAATTTACTACACGGCCTAAGCACAC
Found at i:154426377 original size:31 final size:31
Alignment explanation
Indices: 154426339--154426398 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
154426329 CCTTTTCATA
154426339 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATAATACTGGGCCGAAGCAT
* *
154426370 TTTCATATTTCATATTTCTGGGCCGAAGC
1 TTTCATATTTCATAATACTGGGCCGAAGC
154426399 CTTTACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCAT
Found at i:154426645 original size:24 final size:24
Alignment explanation
Indices: 154426594--154426760 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
154426584 GCTTTATCAT
* *
154426594 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
154426619 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
154426643 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
154426666 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
154426690 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
154426714 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
154426738 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154426761 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:154426694 original size:71 final size:71
Alignment explanation
Indices: 154426593--154426760 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
154426583 TGCTTTATCA
*
154426593 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
154426657 AGCCCTTT
64 AGCCCTTT
* * **
154426665 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
154426730 CCCTTT
66 CCCTTT
154426736 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
154426761 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:154426836 original size:20 final size:20
Alignment explanation
Indices: 154426811--154426870 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
154426801 TATGATTACC
154426811 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
154426831 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
154426851 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
154426871 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:154426945 original size:25 final size:25
Alignment explanation
Indices: 154426913--154426960 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
154426903 ATACATAAAC
* * *
154426913 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
154426938 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
154426961 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:154428177 original size:27 final size:28
Alignment explanation
Indices: 154428115--154428177 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
154428105 GGGCATATTC
154428115 GTCATTTT-ACCATACAGGGGTATTACG
1 GTCATTTTAACCATACAGGGGTATTACG
*
154428142 GTCACTTTAACC-TACAGGGGCT-TTACG
1 GTCATTTTAACCATACAGGGG-TATTACG
*
154428169 GTCTTTTTA
1 GTCATTTTA
154428178 CCTTTTAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (28 bp):
GTCATTTTAACCATACAGGGGTATTACG
Found at i:154428263 original size:27 final size:27
Alignment explanation
Indices: 154428241--154428434 Score: 131
Period size: 27 Copynumber: 7.1 Consensus size: 27
154428231 ACAAACCAAA
* *
154428241 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
*
154428268 GGTACTTCTA-TAATTTT-TAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGT-AAA-TCAAG
* * *
154428296 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
154428323 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
* *
154428350 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
154428377 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** * * *
154428404 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
154428431 GGTA
1 GGTA
154428435 AAACGGTAAT
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 113 0.84
28 20 0.15
29 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:154428688 original size:27 final size:27
Alignment explanation
Indices: 154428357--154428677 Score: 396
Period size: 27 Copynumber: 11.9 Consensus size: 27
154428347 GAGGGTATTT
* *
154428357 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
154428384 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
154428411 CAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
154428438 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
154428465 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
154428492 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTATAAATCGA-GGGTAAAA
* * * *
154428519 CAGTAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTATAAATCGA-GGGTAAAA
154428546 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
** *
154428573 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTATAAATC-GAGGGTAAAA
154428600 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
154428627 CCGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
154428654 CGATAATTCTATAAATCGAGGGTA
1 CGGTAATTCTATAAATCGAGGGTA
154428678 CTTTGGTAAT
Statistics
Matches: 259, Mismatches: 30, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.01
27 255 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
CGGTAATTCTATAAATCGAGGGTAAAA
Found at i:154428699 original size:27 final size:27
Alignment explanation
Indices: 154428669--154428878 Score: 178
Period size: 27 Copynumber: 7.8 Consensus size: 27
154428659 ATTCTATAAA
*
154428669 TCGAGGGTACTTTGGTAATTTTACAAG
1 TCGAGGGTATTTTGGTAATTTTACAAG
** *
154428696 TCGAGGGTATTTTAATAATTTTACAGG
1 TCGAGGGTATTTTGGTAATTTTACAAG
** * *
154428723 TCGAGGGTATTTCAGTAATTTCACAAA
1 TCGAGGGTATTTTGGTAATTTTACAAG
*
154428750 T-TAGGGGTATTTTGGTAATTTTACAA-
1 TCGA-GGGTATTTTGGTAATTTTACAAG
* * *
154428776 ACTAGGGGTATTTTGATAATTTTACAA-
1 TCGA-GGGTATTTTGGTAATTTTACAAG
* * * *
154428803 ACTAGGGGTATTTTGGTAATTTTATAAA
1 TCGA-GGGTATTTTGGTAATTTTACAAG
* * *
154428831 CCAAGGGTATTTTAGTAATTTTACAAAG
1 TCGAGGGTATTTTGGTAATTTTAC-AAG
154428859 -C-AGGGTATTTTGGTAATTTT
1 TCGAGGGTATTTTGGTAATTTT
154428879 GTAAACCAAA
Statistics
Matches: 156, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
26 19 0.12
27 133 0.85
28 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTTGGTAATTTTACAAG
Found at i:154428714 original size:54 final size:54
Alignment explanation
Indices: 154428629--154428883 Score: 214
Period size: 54 Copynumber: 4.7 Consensus size: 54
154428619 GGGTAAAACC
**** * * *
154428629 GTAATTTTACAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTATTTTGATAATTTTATAAATCGAGGGTATTTTA
* * * ** *
154428683 GTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTTGATAATTTTATAAATCGAGGGTATTTTA
* * * * *
154428737 GTAATTTCACAAAT-TAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTT-
1 GTAATTTTACAAATCGA-GGGTATTTTGATAATTTTATAAATCGA-GGGTATTTTA
* * * *
154428790 GATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTA
1 G-TAATTTTACAAATCGA-GGGTATTTTGATAATTTTATAAATCGAGGGTATTTTA
* * *
154428845 GTAATTTTACAAAGC-AGGGTATTTTGGTAATTTTGTAAA
1 GTAATTTTACAAATCGAGGGTATTTTGATAATTTTATAAA
154428884 CCAAAGTATT
Statistics
Matches: 168, Mismatches: 26, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
53 26 0.15
54 138 0.82
55 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAATCGAGGGTATTTTGATAATTTTATAAATCGAGGGTATTTTA
Found at i:154428742 original size:81 final size:78
Alignment explanation
Indices: 154428657--154428878 Score: 221
Period size: 81 Copynumber: 2.7 Consensus size: 78
154428647 GGTAAAACGA
* * *
154428657 TAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAG
1 TAATT-TATAAATCAAGGGTATTTTGGTAATTTTACAAG-C-AGGGTATTTTGATAATTTTACA-
**
154428722 GTCGA-GGGTATTTCAG
62 AACGAGGGGTATTTCAG
* * * *
154428738 TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAA
1 TAATTT-ATAAATCAAGGGTATTTTGGTAATTTTACAAGC-A-GGGTATTTTGATAATTTTACAA
* **
154428803 ACTAGGGGTATTTTGG
63 ACGAGGGGTATTTCAG
* * *
154428819 TAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGTAATTTT
1 TAA-TTTATAAATCAAGGGTATTTTGGTAATTTTAC-AAGCAGGGTATTTTGATAATTTT
154428879 GTAAACCAAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
80 22 0.19
81 88 0.76
82 6 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (78 bp):
TAATTTATAAATCAAGGGTATTTTGGTAATTTTACAAGCAGGGTATTTTGATAATTTTACAAACG
AGGGGTATTTCAG
Found at i:154428892 original size:26 final size:26
Alignment explanation
Indices: 154428755--154428895 Score: 138
Period size: 27 Copynumber: 5.3 Consensus size: 26
154428745 ACAAATTAGG
* * *
154428755 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * * *
154428782 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
154428809 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
154428835 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
154428862 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
154428888 AGTATTTT
1 GGTATTTT
154428896 AAACATGGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 28 0.29
27 70 0.71
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:154437216 original size:32 final size:32
Alignment explanation
Indices: 154437180--154437359 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
154437170 TAAAAGGGTG
*
154437180 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154437212 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
154437244 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
154437276 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
154437308 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154437340 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
154437360 GCACCTCGGG
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 113 0.88
33 16 0.12
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:154445905 original size:32 final size:32
Alignment explanation
Indices: 154445869--154446048 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
154445859 TAAAAGGGTG
*
154445869 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154445901 ACACTTGAAAAGGAAACGTACACTTTGTATGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
154445933 ACACTTGAAAAGTATTTGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* * * *
154445965 GCACTTGAAAAGAAAATGTACCCTTTGTGTGC
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
154445997 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* *
154446029 ACCATTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
154446049 GCACCTCGGG
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 113 0.88
33 16 0.12
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:154458848 original size:29 final size:29
Alignment explanation
Indices: 154458815--154458888 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
154458805 GTGACGAGAT
154458815 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
154458844 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
154458873 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
154458889 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:154458904 original size:29 final size:29
Alignment explanation
Indices: 154458872--154458947 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
154458862 CTGGAAATAT
* *
154458872 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
154458901 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
154458930 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
154458948 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:154460690 original size:42 final size:43
Alignment explanation
Indices: 154460623--154461328 Score: 752
Period size: 42 Copynumber: 16.9 Consensus size: 43
154460613 CCCAACGTCA
* **
154460623 TAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * * * *
154460666 AAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGG-GCC
* *
154460709 AAGGTGCCGGT-G-GCCCGAGGCTCCCGCACGA-CCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* ** **
154460749 GAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCACC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * *
154460792 -AAGTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAA-GGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* *
154460832 TAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAA-GGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* *
154460874 TAGGTTCCCG--GGTGCCCGAGGCTCCCGCACGA-CCAGGGGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
154460915 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
*
154460958 TAGGTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
154461000 TAGGTGCCGATGGT-CCCGAGGCT--CGCACGA-CCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
154461039 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * *
154461080 TAGGTGCCGATGGTGCTCGAGGCTCTCGCATGA-CC-AGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* *
154461121 TAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGCGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* *
154461164 TAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAGGGGCC
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * *
154461207 TAGGTTCCGATGGTGCCCTAGGCTCTCGCACGA-CCAAGGGCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * * *
154461249 TAGGTTCCGATGGTG-CCGAGGCTCCCGCACGA-CAAACGTCC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
* * * *
154461290 TAGGTTGCCGATGGCGTCCAAGGCTCCTGCACG-TCCAAG
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
154461329 CAGCAATGTG
Statistics
Matches: 581, Mismatches: 59, Indels: 46
0.85 0.09 0.07
Matches are distributed among these distances:
39 30 0.05
40 38 0.07
41 150 0.26
42 226 0.39
43 137 0.24
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (43 bp):
TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAGGGCC
Found at i:154460836 original size:23 final size:23
Alignment explanation
Indices: 154460810--154460880 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
154460800 ATGGTGCCCG
154460810 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
154460833 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
154460852 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
154460875 AGGTTC
1 AGGTTC
154460881 CCGGGTGCCC
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
19 10 0.29
20 3 0.09
21 2 0.06
22 3 0.09
23 16 0.47
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:154461279 original size:83 final size:84
Alignment explanation
Indices: 154460623--154461328 Score: 784
Period size: 83 Copynumber: 8.5 Consensus size: 84
154460613 CCCAACGTCA
* ** * * *
154460623 TAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGA
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC-CGA
*
154460686 GGCTCCCGCAC-ATCCAAGGCACC
63 GGCTCCCGCACGA-CCAAGG-GCC
* * * *
154460709 AAGGTGCCGGT-G-GCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGG
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGG
**
154460772 CTCCCGCAC-ATCCAAGCACC
65 CTCCCGCACGA-CCAAGGGCC
* * * *
154460792 -AAGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGG
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGG
* * *
154460855 TTCTCGCACGATCAA-GGCC
65 CTCCCGCACGACCAAGGGCC
* *
154460874 TAGGTTCCCG--GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAG
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAG
154460937 GCTCCCGCAC-ATCCAAGGGCC
64 GCTCCCGCACGA-CCAAGGGCC
* *
154460958 TAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTCCCGAGGC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
154461022 T--CGCACGACCAAGGGCC
66 TCCCGCACGACCAAGGGCC
154461039 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGG-TGCCGATGGTGCTCGAGG
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC-CGAGG
* *
154461102 CTCTCGCATGACC-AGGGCC
65 CTCCCGCACGACCAAGGGCC
* *
154461121 TAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCGAG
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GCCGAG
*
154461186 GCTCCCGCACGACCAGGGGCC
64 GCTCCCGCACGACCAAGGGCC
* * *
154461207 TAGGTTCCGATGGTGCCCTAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCGAGGC
1 TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
* * *
154461271 TCCCGCACGACAAACGTCC
66 TCCCGCACGACCAAGGGCC
* * * * *
154461290 TAGGTTGCCGATGGCGTCCAAGGCTCCTGCACGTCCAAG
1 TAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
154461329 CAGCAATGTG
Statistics
Matches: 537, Mismatches: 60, Indels: 48
0.83 0.09 0.07
Matches are distributed among these distances:
80 21 0.04
81 55 0.10
82 44 0.08
83 180 0.34
84 119 0.22
85 104 0.19
86 14 0.03
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (84 bp):
TAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
TCCCGCACGACCAAGGGCC
Found at i:154461547 original size:24 final size:24
Alignment explanation
Indices: 154461515--154461568 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
154461505 TTTCGATATT
*
154461515 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154461539 CCGGGATGGATCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154461563 CCGGGA
1 CCGGGA
154461569 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154462055 original size:58 final size:59
Alignment explanation
Indices: 154461964--154462084 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
154461954 GGGAGGGACA
* *
154461964 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * * *
154462022 GGGACGATTCATTCGTTATTGGGTACCGAACATGTAACGGTGTCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
154462081 GGGA
1 GGGA
154462085 TTGGGGAGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 49 0.88
59 7 0.12
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:154462146 original size:24 final size:24
Alignment explanation
Indices: 154462118--154462171 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
154462108 TTTGTGTATC
* * *
154462118 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
154462142 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154462166 CCGGGA
1 CCGGGA
154462172 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154470050 original size:42 final size:42
Alignment explanation
Indices: 154469997--154470715 Score: 852
Period size: 41 Copynumber: 17.5 Consensus size: 42
154469987 CCCTGCTGCT
* * *
154469997 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
** * * *
154470039 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
* *
154470080 TCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 -CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG-C
* *
154470124 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
** *
154470167 CGAGGCTCCCGCAC-ATCCAAGCACC-AAG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-C
154470208 CGAGGCT--CGCACGA-C-A-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
*
154470246 CGAGGCT--CGCACGATCAA-GGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
154470284 CGAGGCTCCCGCACGACC-AGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
154470325 CGAGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
154470365 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
154470406 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
154470448 CGAGGCTCCCGCACGACC-AGGGCCTAGG-TGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
154470488 CGAGGCTCTCGCACGACC-AGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GC
154470530 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GC
*
154470572 CGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
* *
154470613 CTAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
* *
154470654 CGAGGCTCCCGCACGA-CAA-GTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-C
* * *
154470695 CAAGGCTCCTGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
154470716 CAGCAATGTG
Statistics
Matches: 609, Mismatches: 38, Indels: 59
0.86 0.05 0.08
Matches are distributed among these distances:
36 2 0.00
37 3 0.00
38 36 0.06
39 26 0.04
40 115 0.19
41 186 0.31
42 141 0.23
43 98 0.16
44 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
Found at i:154470933 original size:24 final size:24
Alignment explanation
Indices: 154470901--154470954 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
154470891 TTTCGATATT
*
154470901 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154470925 CCGGGATGGATCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154470949 CCGGGA
1 CCGGGA
154470955 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154471441 original size:58 final size:59
Alignment explanation
Indices: 154471350--154471470 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
154471340 GGGAGGGACA
* *
154471350 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
154471408 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
154471467 GGGA
1 GGGA
154471471 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:154471532 original size:24 final size:24
Alignment explanation
Indices: 154471504--154471557 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
154471494 TTTGTGTATC
* * *
154471504 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
154471528 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154471552 CCGGGA
1 CCGGGA
154471558 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154479869 original size:82 final size:84
Alignment explanation
Indices: 154479381--154480098 Score: 850
Period size: 82 Copynumber: 8.8 Consensus size: 84
154479371 CCCTGCTGCT
* * *
154479381 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAA
** * * * *
154479444 GCACCAAGGTGCCAATGCTGCT
63 GGGCCTAGGTGCCGATGGTGCC
* *
154479466 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAA
* **
154479529 GGGCCGAGGTTGCCGATGGTGTT
63 GGGCCTAGG-TGCCGATGGTGCC
** *
154479552 CGAGGCTCCCGCAC-ATCCAAGCACC-AAG-TGCCGATGGTGCCCGAGGCT--CGCACGACC-A-
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
154479610 GGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGG-TGCCGATGGTGCC
*
154479632 CGAGGCT--CGCACGATCAA-GGCCTAGGTT-CCGATGGTGCCGAGGCTCCCGCACGACC-AGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
154479692 CCTAGGTGCCGATGGTGCC
66 CCTAGGTGCCGATGGTGCC
154479711 CGAGGCT-CCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
154479773 CCTAGGTGCCGATGGT-CC
66 CCTAGGTGCCGATGGTGCC
154479791 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGG
154479854 GCCTAGGTGCCGATGGTG-C
65 GCCTAGGTGCCGATGGTGCC
*
154479873 CGAGGCTCTCGCACGACC-AGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAA-G
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGG
*
154479936 GCCTAGGTTGCCGATGGTGGC
65 GCCTAGG-TGCCGATGGTGCC
*
154479957 CGAGGCTCCCGCACGACC-AGGGCCTAGGTT-CCGATGGTGCC-AGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
154480019 CCTAGGTTCCGATGGTG-C
66 CCTAGGTGCCGATGGTGCC
* * * * *
154480037 CGAGGCTCCCGCACGA-CAA-GTCCTAGGTTGCCGATGGCGTCCAAGGCTCCTGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
154480099 CAGCAATGTG
Statistics
Matches: 576, Mismatches: 30, Indels: 57
0.87 0.05 0.09
Matches are distributed among these distances:
77 10 0.02
78 19 0.03
79 47 0.08
80 116 0.20
81 64 0.11
82 123 0.21
83 49 0.09
84 52 0.09
85 59 0.10
86 37 0.06
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (84 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCC
Found at i:154479994 original size:287 final size:282
Alignment explanation
Indices: 154479404--154480098 Score: 940
Period size: 287 Copynumber: 2.4 Consensus size: 282
154479394 CATCCAACGT
** * * *
154479404 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTT-CCGATGGTG-CCGAGGCT-CCGCACA-CCAAGGGCCTAGGTGCCGATGGTGC-CGA
*
154479469 GGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
61 GGCTCCCGCACGA-CCAAGG-ACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
**
154479533 CGAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGTGCCGATGGTGCCCGAGG
124 CGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTGCCGATGGTGCCCGAGG
*
154479598 CTCGCACGACCAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCGCACGATCAAGGCCTAGGTTCCG
189 CTCGCACGACCAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCGCACGACCAAGGCCTAGGTTCCG
154479663 ATGGTGCCGAGGCTCCCGCACGACCAGGG
254 ATGGTGCCGAGGCTCCCGCACGACCAGGG
*
154479692 CCTAGGTGCCGATGGTGCCCGAGGCTCCGCACACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCT
1 CCTAGGTTCCGATGGTG-CCGAGGCTCCGCACACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCT
* *
154479757 CCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCT-CCGCACGACCAAGGGCCTAGGT
65 CCCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGT
* * *
154479820 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGC-CTAGGTGCCGATGGTG-CCGAGGCTCT
130 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCA-AGCACCAAGTGCCGATGGTGCCCGAGG--CT
*
154479882 CGCACGACCAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGC
191 CGCACGACCA-GGCCTAGGTTGCCGATGGTGCCCGAGGCT--CGCACGACCAAGGCCTAGGTT-C
154479947 CGATGGTGGCCGAGGCTCCCGCACGACCAGGG
252 CGATGGT-GCCGAGGCTCCCGCACGACCAGGG
*
154479979 CCTAGGTTCCGATGGTGCC-AGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCGAGGC
1 CCTAGGTTCCGATGGTGCCGAGGCTC-CGCAC-ACCAAGGGCCTAGGTGCCGATGGTGCCGAGGC
* * * * * *
154480043 TCCCGCACGA-CAA-GTCCTAGGTTGCCGATGGCGTCCAAGGCTCCTGCACGTCCAAG
64 TCCCGCACGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
154480099 CAGCAATGTG
Statistics
Matches: 367, Mismatches: 25, Indels: 30
0.87 0.06 0.07
Matches are distributed among these distances:
280 6 0.02
281 63 0.17
282 24 0.07
283 43 0.12
284 20 0.05
285 54 0.15
286 34 0.09
287 105 0.29
288 18 0.05
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (282 bp):
CCTAGGTTCCGATGGTGCCGAGGCTCCGCACACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCTC
CCGCACGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTT
GCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTGCCGATGGTGCCCGAGGCTCGCAC
GACCAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCGCACGACCAAGGCCTAGGTTCCGATGGTGC
CGAGGCTCCCGCACGACCAGGG
Found at i:154480084 original size:41 final size:41
Alignment explanation
Indices: 154479381--154480098 Score: 820
Period size: 40 Copynumber: 17.5 Consensus size: 41
154479371 CCCTGCTGCT
* *
154479381 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTG-C
* * * *
154479424 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGC
*
154479465 TCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 -CGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTGCCGATGGTG-C
* *
154479509 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTG-C
* *
154479552 CGAGGCTCCCGCAC-ATCCAA-GCACCAAG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGC-CTAGGTTGCCGATGGTG-C
154479593 CGAGGCT--CGCACGACC-AGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTG-C
*
154479632 CGAGGCT--CGCACGATCAAGGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGC
*
154479670 CGAGGCTCCCGCACGACCAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTG-C
154479711 CGAGGCT-CCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
*
154479750 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
154479791 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTG-C
*
154479833 CGAGGCTCCCGCACGACCAGGGCCTAGG-TGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGC
* *
154479873 CGAGGCTCTCGCACGACCAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGT-GC
154479915 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGT-GC
*
154479957 CGAGGCTCCCGCACGACCAGGGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGC
*
154479997 C-AGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
* *
154480037 CGAGGCTCCCGCACGA-CAAGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTG-C
* * *
154480078 CAAGGCTCCTGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
154480099 CAGCAATGTG
Statistics
Matches: 608, Mismatches: 36, Indels: 63
0.86 0.05 0.09
Matches are distributed among these distances:
38 12 0.02
39 84 0.14
40 153 0.25
41 127 0.21
42 131 0.22
43 97 0.16
44 4 0.01
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (41 bp):
CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGC
Found at i:154480315 original size:24 final size:24
Alignment explanation
Indices: 154480283--154480336 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
154480273 TTTCGATATT
*
154480283 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154480307 CCGGGATGGATCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154480331 CCGGGA
1 CCGGGA
154480337 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154480821 original size:58 final size:59
Alignment explanation
Indices: 154480730--154480850 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
154480720 GGGAGGGACA
* *
154480730 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
154480788 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
154480847 GGGA
1 GGGA
154480851 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:154480912 original size:24 final size:24
Alignment explanation
Indices: 154480884--154480937 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
154480874 TTTGTGTATC
* * *
154480884 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
154480908 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154480932 CCGGGA
1 CCGGGA
154480938 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154488972 original size:41 final size:40
Alignment explanation
Indices: 154488757--154489473 Score: 601
Period size: 41 Copynumber: 17.6 Consensus size: 40
154488747 CCCTGCTGCT
* * *
154488757 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAA-G-CCCAGG-TGCCGATGGTGCC
* * *
154488799 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGC-CC-AGGTGCCGATGGTGCC
154488841 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAA-GC-CC-AGGTGCCGATGGTGCC
* **
154488884 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAA--GCCCAGG-TGCCGATGGTGCC
*
154488927 CGAGGCTCCCGCAC-ATCCAAGCACCAAGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGC-CCAGGTGCCGATGGTGCC
* *
154488968 CGAGGCT--CGCACGA-CAGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGCCCAGG-TGCCGATGGTGCC
* * * *
154489006 CGAGGCT--CGCACGATCAAGGCCTAGGTTCCGGTGGTG-C
1 CGAGGCTCCCGCACGACCAA-GCCCAGGTGCCGATGGTGCC
* *
154489044 CGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCA-AGCCCAGGTGCCGATGGTGCC
*
154489085 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAA--GCCCAGGTGCCGATGGTGCC
*
154489125 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAA--GCCCAGGTGCCGATGGTGCC
*
154489166 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA--GCCCAGG-TGCCGATGGTGCC
* *
154489208 CGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCA-AGCCCAGGTGCCGATGGTGCC
* * * *
154489248 CGAGGCTCTCGCACGACCAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCA-AGCCCAGG-TGCCGATGGTGCC
* *
154489290 CGAGGCT-CC-CACGACCAAGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAA-GCCCAGG-TGCCGATGGTGCC
* * *
154489330 CGAGGCTCCCGCACGACCAGGGCCTAGGTTCCGATGGTG-C
1 CGAGGCTCCCGCACGACCA-AGCCCAGGTGCCGATGGTGCC
* * * *
154489370 CTAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAA--GCCCAGGTGCCGATGGTGCC
* * *
154489411 CGAGGCTCCCGCACGA-CAAGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAG-CCCAGG-TGCCGATGGTGCC
* * *
154489452 CAAGGCTCCTGCACGTCCAAGC
1 CGAGGCTCCCGCACGACCAAGC
154489474 AGCAATGTGC
Statistics
Matches: 595, Mismatches: 43, Indels: 75
0.83 0.06 0.11
Matches are distributed among these distances:
37 3 0.01
38 40 0.07
39 22 0.04
40 167 0.28
41 179 0.30
42 95 0.16
43 85 0.14
44 4 0.01
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (40 bp):
CGAGGCTCCCGCACGACCAAGCCCAGGTGCCGATGGTGCC
Found at i:154489057 original size:40 final size:40
Alignment explanation
Indices: 154488757--154489472 Score: 744
Period size: 40 Copynumber: 17.5 Consensus size: 40
154488747 CCCTGCTGCT
* *
154488757 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTT-CCGATGGTG-C
* * * * *
154488799 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGC
1 CGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTCCGATGGTGC
* *
154488840 TCGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 -CGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTCCGATGGTG-C
* *
154488884 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTT-CCGATGGTG-C
* * *
154488927 CGAGGCTCCCGCAC-ATCCAA-GCACCAAGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGC-CTAGGTTCCGATGGTG-C
154488968 CGAGGCT--CGCACGA-C-AGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTT-CCGATGGTG-C
* *
154489006 CGAGGCT--CGCACGATCAAGGCCTAGGTTCCGGTGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTCCGATGGTGC
* *
154489044 CGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTCCGATGGTG-C
*
154489085 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTCCGATGGTGC
* *
154489125 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTCCGATGGTGC
154489166 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTT-CCGATGGTG-C
* *
154489208 CGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTCCGATGGTGC
* *
154489248 CGAGGCTCTCGCACGACCAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTT-CCGATGGT-GC
154489290 CGAGGCT-CC-CACGACCAAGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTT-CCGATGGT-GC
*
154489330 CGAGGCTCCCGCACGACCAGGGCCTAGGTTCCGATGGTGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTCCGATGGTGC
* *
154489370 CTAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGC
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTCCGATGGTGC
* *
154489411 CGAGGCTCCCGCACGA-CAAGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTT-CCGATGGTG-C
* * *
154489452 CAAGGCTCCTGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
154489473 CAGCAATGTG
Statistics
Matches: 595, Mismatches: 47, Indels: 64
0.84 0.07 0.09
Matches are distributed among these distances:
37 5 0.01
38 36 0.06
39 23 0.04
40 175 0.29
41 169 0.28
42 102 0.17
43 81 0.14
44 4 0.01
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (40 bp):
CGAGGCTCCCGCACGACCAAGGCCTAGGTTCCGATGGTGC
Found at i:154489358 original size:122 final size:123
Alignment explanation
Indices: 154488757--154489466 Score: 850
Period size: 122 Copynumber: 5.8 Consensus size: 123
154488747 CCCTGCTGCT
* * * *
154488757 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAG
* * * * * * *
154488820 CACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
64 -GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGG-GCCTAGGTGCCGATGGTG-C
* * *
154488884 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAA-
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAG
* *
154488947 GCACCAAGTGCCGATGGTGCCCGAGGCT--CGCACGA-CA-GGCCTAGGTTGCCGATGGTGCC
64 GC-CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGG-TGCCGATGGTG-C
* * *
154489006 CGAGG--CTCGCACGATCAA-GGCCTAGGTT-CCGGTGGTGCCGAGGCTCCCGCACGACCAGGGC
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGC
154489067 CTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCTAGGTGCCGATGGTGC
66 CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCCTAGGTGCCGATGGTGC
* *
154489125 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTCCCGAGGCT-CCGCACGACCAAGGG
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAA-GG
154489188 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGC
65 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGC
154489248 CGAGGCTCTCGCACGACC-AGGGCCTAGGTTGCCGATGGTGGCCGAGGCT-CC-CACGACCAAGG
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGG
* *
154489310 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGCCTAGGTTCCGATGGTGC
65 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGC
* *
154489370 CTAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCGAGGCTCCCGCACGA-CAAGTC
1 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGC
* * * *
154489433 CTAGGTTGCCGATGGCGTCCAAGGCTCCTGCACG
66 CTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACG
154489467 TCCAAGCAGC
Statistics
Matches: 524, Mismatches: 36, Indels: 51
0.86 0.06 0.08
Matches are distributed among these distances:
117 40 0.08
118 12 0.02
119 21 0.04
120 23 0.04
121 45 0.09
122 182 0.35
123 103 0.20
124 14 0.03
125 5 0.01
126 2 0.00
127 33 0.06
128 44 0.08
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.15
Consensus pattern (123 bp):
CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGC
CTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGCCTAGGTGCCGATGGTGC
Found at i:154489488 original size:82 final size:82
Alignment explanation
Indices: 154488757--154489472 Score: 816
Period size: 82 Copynumber: 8.8 Consensus size: 82
154488747 CCCTGCTGCT
* *
154488757 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAG
** * * *
154488820 CACCAAGGTGCCAATGCTGC
63 GGCCTAGGTGCCGATGGTGC
*
154488840 TCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
1 -CGAGGCTCCCGCACGA-CCAAGG--CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA
* *
154488903 AGGGCCGAGGTTGCCGATGGTGTT
61 AGGGCCTAGG-TGCCGATGGTG-C
* *
154488927 CGAGGCTCCCGCAC-ATCCAA-GCACCAAG-TGCCGATGGTGCCCGAGGCT--CGCACGA-C-A-
1 CGAGGCTCCCGCACGA-CCAAGGC-CTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
154488984 GGCCTAGGTTGCCGATGGTGCC
63 GGCCTAGG-TGCCGATGGTG-C
* *
154489006 CGAGGCT--CGCACGATCAAGGCCTAGGTT-CCGGTGGTGCCGAGGCTCCCGCACGACC-AGGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGC
154489067 CTAGGTGCCGATGGTGCC
66 CTAGGTGCCGATGGTG-C
154489085 CGAGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
154489148 CCTAGGTGCCGATGGTCC
65 CCTAGGTGCCGATGGTGC
154489166 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGG
1 CGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGG
154489229 GCCTAGGTGCCGATGGTGC
64 GCCTAGGTGCCGATGGTGC
* *
154489248 CGAGGCTCTCGCACGACCAGGGCCTAGGTTGCCGATGGTGGCCGAGGCT-CC-CACGACCAA-GG
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGG
154489310 CCTAGGTTGCCGATGGTGGC
65 CCTAGG-TGCCGATGGT-GC
* * *
154489330 CGAGGCTCCCGCACGACCAGGGCCTAGGTT-CCGATGGTGCCTAGGCTCTCGCACGACCAAGGGC
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGC
*
154489394 CTAGGTTCCGATGGTGC
66 CTAGGTGCCGATGGTGC
* * * * *
154489411 CGAGGCTCCCGCACGA-CAAGTCCTAGGTTGCCGATGGCGTCCAAGGCTCCTGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
154489473 CAGCAATGTG
Statistics
Matches: 564, Mismatches: 36, Indels: 66
0.85 0.05 0.10
Matches are distributed among these distances:
76 8 0.01
77 19 0.03
78 11 0.02
79 48 0.09
80 54 0.10
81 111 0.20
82 160 0.28
83 39 0.07
84 38 0.07
85 41 0.07
86 35 0.06
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (82 bp):
CGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGC
CTAGGTGCCGATGGTGC
Found at i:154489689 original size:24 final size:24
Alignment explanation
Indices: 154489657--154489710 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
154489647 TTTCGATATT
*
154489657 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154489681 CCGGGATGGATCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154489705 CCGGGA
1 CCGGGA
154489711 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154490197 original size:58 final size:59
Alignment explanation
Indices: 154490106--154490226 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
154490096 GGGAGGGACA
* *
154490106 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
154490164 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
154490223 GGGA
1 GGGA
154490227 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:154490288 original size:24 final size:24
Alignment explanation
Indices: 154490260--154490313 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
154490250 TTTGTGTATC
* * *
154490260 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
154490284 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154490308 CCGGGA
1 CCGGGA
154490314 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154490998 original size:170 final size:171
Alignment explanation
Indices: 154490672--154491011 Score: 496
Period size: 170 Copynumber: 2.0 Consensus size: 171
154490662 TTTTAATTGA
* * *
154490672 AAATTTTTTCTGTTGGCCCAAAATACAAGAAGCCGAATGAAATATGGCATGATGGCACGGTAGAT
1 AAATTTTTTCTGTTGGCCCAAAATACAAGAA-CCGAATGAAATATGGCATGACGGCACGGCAGAA
* *
154490737 AATTGAACAAGTGCCGGGCCGCCAACAGTTGGGGCTCGCACTCGCACCACCACGGCCCCCGTGTG
65 AATTGAACAAGTGCCGGGCCGCCAACACTTGGGGCTCGCACCCGCACCACCACGGCCCCCGTGTG
*
154490802 CGATGTTTCCCGAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
130 CCATGTTTCCC-AGGGGGCGGCACGGCCAAGTGTTTAACTTAG
*
154490845 AAATTTTTTCTGTTGGCCC-AAA-ACAA-ATA-C-AA-GAAGTATGGCATGGCACGGCACGGCAG
1 AAATTTTTTCTGTTGGCCCAAAATACAAGA-ACCGAATGAAATATGGCAT-G-ACGGCACGGCAG
154490904 AAAATTGAACAAGTGCCCGGGCCGCCAACACTTGGGAGCTCGCACCCGCACCACCACGGCCCCCG
63 AAAATTGAACAAGTG-CCGGGCCGCCAACACTTGGG-GCTCGCACCCGCACCACCACGGCCCCCG
154490969 TTGTGCCATGTTTCCC-GGGGGCGGCACGGCCAAGTGTTTAACT
126 -TGTGCCATGTTTCCCAGGGGGCGGCACGGCCAAGTGTTTAACT
154491012 AACTCCTTAC
Statistics
Matches: 154, Mismatches: 7, Indels: 15
0.88 0.04 0.09
Matches are distributed among these distances:
167 11 0.07
168 3 0.02
169 25 0.16
170 47 0.31
171 32 0.21
172 17 0.11
173 19 0.12
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (171 bp):
AAATTTTTTCTGTTGGCCCAAAATACAAGAACCGAATGAAATATGGCATGACGGCACGGCAGAAA
ATTGAACAAGTGCCGGGCCGCCAACACTTGGGGCTCGCACCCGCACCACCACGGCCCCCGTGTGC
CATGTTTCCCAGGGGGCGGCACGGCCAAGTGTTTAACTTAG
Found at i:154498190 original size:42 final size:43
Alignment explanation
Indices: 154498137--154498856 Score: 891
Period size: 41 Copynumber: 17.5 Consensus size: 43
154498127 CCCTGCTGCT
* * * *
154498137 CGAGGCACCCGCAC-ACCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
154498179 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
154498221 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* **
154498264 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** *
154498307 CGAGGCTCCCGCAC-ATCCAAGCACC-AAG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
*
154498348 CGAGGCT--CGCACGATC-A-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
154498387 CGAGGCT--CGCACGATCAA-GGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498426 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498468 CGAGGCTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498508 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498550 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498592 CGAGGCTCCCGCACGACC-AGGGCCTAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
154498632 CGAGGCTCTCGCACGACC-AGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
154498674 CGAGGCT-CCGCACGACCAA-GGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
154498715 CGAGGCTCCCGCACGACCAGGGGCCTAGGTT-CCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
154498756 CGAGGCT-CCGCACGACC-AGGGCCTAGGTT-CCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
154498795 CGAGGCTCCCGCACGA-CAAGGGCCTAGGTT-CCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
154498836 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
154498857 CAGCAATGTG
Statistics
Matches: 617, Mismatches: 35, Indels: 52
0.88 0.05 0.07
Matches are distributed among these distances:
37 2 0.00
38 3 0.00
39 84 0.14
40 91 0.15
41 181 0.29
42 157 0.25
43 98 0.16
44 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.14
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:154499073 original size:24 final size:24
Alignment explanation
Indices: 154499041--154499094 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
154499031 TTTCGATATT
*
154499041 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154499065 CCGGGATGGATCGCCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154499089 CCGGGA
1 CCGGGA
154499095 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.35, G:0.43, T:0.07
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154499578 original size:58 final size:59
Alignment explanation
Indices: 154499487--154499607 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
154499477 GGGAGGGACA
* *
154499487 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
154499545 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
154499604 GGGA
1 GGGA
154499608 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:154499669 original size:24 final size:24
Alignment explanation
Indices: 154499641--154499694 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
154499631 TTTGTGTATC
* * *
154499641 CCGGGATGGCTCGCCGGATCATCG
1 CCGGGATGGATCGCCGGAGCACCG
*
154499665 CCGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCGCCGGAGCACCG
154499689 CCGGGA
1 CCGGGA
154499695 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGATGGATCGCCGGAGCACCG
Found at i:154504795 original size:38 final size:38
Alignment explanation
Indices: 154504733--154504895 Score: 224
Period size: 38 Copynumber: 4.3 Consensus size: 38
154504723 GGGTCTTTAA
** *
154504733 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATA-TTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
154504772 CCAGATAATTTCTAGCATATAGCCTGCTGACCT-ATGT
1 CCGGATATTTTCCAGCATATAGCCTGCGGACCTCATGT
154504809 -CGGATATTTTCCAGCATATAGCCT-CGGACCTCATGT
1 CCGGATATTTTCCAGCATATAGCCTGCGGACCTCATGT
154504845 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATA-TTTTCCAGCATATAGCCTGCGGACCTCATGT
154504884 CCGGATATTTTC
1 CCGGATATTTTC
154504896 AATCTCATAC
Statistics
Matches: 109, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
35 6 0.06
36 25 0.23
37 9 0.08
38 44 0.40
39 25 0.23
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (38 bp):
CCGGATATTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:154504831 original size:74 final size:76
Alignment explanation
Indices: 154504733--154504895 Score: 224
Period size: 74 Copynumber: 2.2 Consensus size: 76
154504723 GGGTCTTTAA
* *
154504733 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATA-ATTTCTAGCATATAGCCT
1 CCGGATA-TTTTCCAGCACATAGCCT-CGGACCTCAAGTCCAGATATATTTCCAGCATATAGCCT
*
154504797 GCTGACCT-ATGT
64 GCGGACCTCATGT
* * * *
154504809 -CGGATATTTTCCAGCATATAGCCTCGGACCTCATGTCCGGATATTTTTCCAGCATATAGCCTGC
1 CCGGATATTTTCCAGCACATAGCCTCGGACCTCAAGTCCAGATATATTTCCAGCATATAGCCTGC
154504873 GGACCTCATGT
66 GGACCTCATGT
154504884 CCGGATATTTTC
1 CCGGATATTTTC
154504896 AATCTCATAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
73 17 0.22
74 39 0.51
75 10 0.13
76 11 0.14
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (76 bp):
CCGGATATTTTCCAGCACATAGCCTCGGACCTCAAGTCCAGATATATTTCCAGCATATAGCCTGC
GGACCTCATGT
Found at i:154509939 original size:39 final size:39
Alignment explanation
Indices: 154509885--154510047 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
154509875 TGTGAATGAA
154509885 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
154509924 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
154509963 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154510002 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
154510042 TGTGCG
1 TGTGCG
154510048 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:154510063 original size:40 final size:39
Alignment explanation
Indices: 154509885--154510077 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
154509875 TGTGAATGAA
* *
154509885 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
154509924 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
154509963 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154510002 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
154510042 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
154510078 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:154517038 original size:93 final size:93
Alignment explanation
Indices: 154516926--154517190 Score: 503
Period size: 93 Copynumber: 2.8 Consensus size: 93
154516916 CGCCCATAAG
* * *
154516926 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
154516991 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
154517019 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
154517084 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
154517112 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
154517177 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
154517191 TCAACCATCC
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 169 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:154517187 original size:46 final size:46
Alignment explanation
Indices: 154516919--154517187 Score: 302
Period size: 46 Copynumber: 5.8 Consensus size: 46
154516909 TGTAACCCGC
* * *
154516919 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
154516965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
154517015 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
154517058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
154517108 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
154517151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
154517188 TGCTCAACCA
Statistics
Matches: 189, Mismatches: 16, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 4 0.02
46 92 0.49
47 58 0.31
48 4 0.02
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:154520687 original size:39 final size:39
Alignment explanation
Indices: 154520633--154520795 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
154520623 TGTGAATGAA
* *
154520633 TGTGCGAATTGTGATATTCGGGCTAAGCCTGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
154520672 TGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
154520711 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154520750 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
154520790 TGTGCG
1 TGTGCG
154520796 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:154520811 original size:40 final size:39
Alignment explanation
Indices: 154520633--154520825 Score: 224
Period size: 39 Copynumber: 4.9 Consensus size: 39
154520623 TGTGAATGAA
* * * *
154520633 TGTGCGAATTGTGATATTCGGGCTAAGCCTGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154520672 TGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
154520711 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
154520750 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
154520790 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
154520826 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:154527571 original size:43 final size:43
Alignment explanation
Indices: 154527524--154527644 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
154527514 CCTCAATTGA
* * *
154527524 GATTTACATATAAGACCATGTCTTGGACATCGGCATC-TTATAT
1 GATTTACATGTAAGACCATGTCTAGGACATCGGCATCGATAT-T
* **
154527567 GATTT-CATGTAAGACCCTGTCTAGGACAAAGGCATCGATATT
1 GATTTACATGTAAGACCATGTCTAGGACATCGGCATCGATATT
* * * *
154527609 GAATTACATGTAAGACCACGTCTGGGACGTCGGCAT
1 GATTTACATGTAAGACCATGTCTAGGACATCGGCAT
154527645 TGTACTTGTT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 31 0.49
43 32 0.51
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTAGGACATCGGCATCGATATT
Found at i:154527642 original size:85 final size:85
Alignment explanation
Indices: 154527486--154527644 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
154527476 GTCTGAGACA
* * * * * * *
154527486 TCATGTAAGACCGTGTTTGGGACACAGGCCTCAATTGAGATTTACATATAAGACCATGTCTTGGA
1 TCATGTAAGACCCTGTCTAGGACAAAGGCATCAATTGAGATTTACATATAAGACCACGTCTGGGA
154527551 CATCGGCATCTTATATGATT
66 CATCGGCATCTTATATGATT
*
154527571 TCATGTAAGACCCTGTCTAGGACAAAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCATGTAAGACCCTGTCTAGGACAAAGGCATC-A-ATTGAGATTTACATATAAGACCACGTCTGG
*
154527634 GACGTCGGCAT
64 GACATCGGCAT
154527645 TGTACTTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 56 0.89
86 2 0.03
87 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (85 bp):
TCATGTAAGACCCTGTCTAGGACAAAGGCATCAATTGAGATTTACATATAAGACCACGTCTGGGA
CATCGGCATCTTATATGATT
Found at i:154532873 original size:55 final size:55
Alignment explanation
Indices: 154532789--154532919 Score: 176
Period size: 55 Copynumber: 2.4 Consensus size: 55
154532779 GCACTTATAA
* * *
154532789 TTTT-AAGTCAGT-TTAGTACACAGGTAGGCCACACGAGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTGTT-GTACACAGGCAGGCCACACGAGCATGTGTCATGGACGTG
* *
154532843 TTTTAAAGTCAGTGTTGTACACTGGCAGGCCACACGGGCATGTGTCATGGACGTG
1 TTTTAAAGTCAGTGTTGTACACAGGCAGGCCACACGAGCATGTGTCATGGACGTG
* *
154532898 TTTTAAAGTTAGTGTTGCACAC
1 TTTTAAAGTCAGTGTTGTACAC
154532920 GGTCTAAGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
54 4 0.06
55 62 0.91
56 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (55 bp):
TTTTAAAGTCAGTGTTGTACACAGGCAGGCCACACGAGCATGTGTCATGGACGTG
Found at i:154535512 original size:69 final size:68
Alignment explanation
Indices: 154535387--154535520 Score: 196
Period size: 69 Copynumber: 2.0 Consensus size: 68
154535377 ACTAAAACAA
*
154535387 AATCCATTAATTATCACTTTTTACTCTAGATAACAATGTATCAGCTCTTCTAGATCCTTGTACCA
1 AATCCATTAATTATCACTTTTTACTCTAGATAACAATGTATCAACTCTTCTAGATCCTTGTACCA
154535452 CAT
66 CAT
* * * * * *
154535455 AATCCATTAATTATCACTTTGTTTCTTTGGATAATAATGTATCAACTCTTTTGGATCCTTGTACC
1 AATCCATTAATTATCACTTT-TTACTCTAGATAACAATGTATCAACTCTTCTAGATCCTTGTACC
154535520 A
65 A
154535521 TGAAAGATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
68 20 0.34
69 38 0.66
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (68 bp):
AATCCATTAATTATCACTTTTTACTCTAGATAACAATGTATCAACTCTTCTAGATCCTTGTACCA
CAT
Found at i:154541827 original size:29 final size:29
Alignment explanation
Indices: 154541787--154541889 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
154541777 GTTGAGAGAT
*
154541787 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
154541816 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
154541845 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
154541874 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
154541890 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:154545603 original size:40 final size:40
Alignment explanation
Indices: 154545537--154545702 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
154545527 AAATTGAATA
* * *
154545537 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
154545576 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
154545616 A-ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
154545655 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
154545695 ATATCCGG
1 ATATCCGG
154545703 TTATATTCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 41 0.40
40 57 0.55
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:154545621 original size:39 final size:40
Alignment explanation
Indices: 154545577--154545686 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
154545567 CTGGAAATTA
* *
154545577 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
154545615 TAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 T-ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
154545656 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
154545687 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 4 0.06
39 27 0.44
40 27 0.44
41 4 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:154553633 original size:135 final size:136
Alignment explanation
Indices: 154553381--154553664 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
154553371 CATTGGGCCT
** *
154553381 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
154553446 AGCCCCTTATTCAGATAACAGTATGGCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AAC
66 AGCCCCTTATTCAGATAACAGTATGGCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
154553510 ATATGC
131 ATATGC
154553516 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154553580 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGG-CCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154553645 CATATGC
130 CATATGC
154553652 AAGCCCATTTGGG
1 AAGCCCATTTGGG
154553665 GAGACTACTC
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
134 58 0.41
135 63 0.44
136 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCATAGGCCCATTTCAAAATACATGCAACATCAATAAAC
ATATGC
Found at i:154556014 original size:40 final size:40
Alignment explanation
Indices: 154555969--154556086 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
154555959 CGGAATATAA
154555969 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154556009 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154556049 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTA
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTA
154556087 ACTTTCCAGC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154557965 original size:93 final size:93
Alignment explanation
Indices: 154557851--154558021 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
154557841 GCCCATAAGT
* * *
154557851 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154557916 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
154557944 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154558009 CGAGTTCGGATGC
66 CGAGTTCGGATGC
154558022 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:154558037 original size:46 final size:46
Alignment explanation
Indices: 154557843--154558023 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
154557833 TGTAACCCGC
* * *
154557843 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
154557889 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
154557939 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
154557982 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
154558024 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:154561011 original size:26 final size:26
Alignment explanation
Indices: 154560975--154561114 Score: 192
Period size: 26 Copynumber: 5.2 Consensus size: 26
154560965 CATGATATTC
154560975 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
154561001 TTATCATGAAAC-TTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
154561026 TTATCATGGAACATTTACCTAACCTAACCTA
1 TTATCATGAAACATTTACCTAA-C---CC-A
154561057 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
154561083 TTATCATGGAACATTTGCCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
154561109 TTATCA
1 TTATCA
154561115 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
25 24 0.23
26 51 0.50
27 3 0.03
30 3 0.03
31 22 0.21
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:154561054 original size:31 final size:30
Alignment explanation
Indices: 154560991--154561108 Score: 128
Period size: 31 Copynumber: 4.2 Consensus size: 30
154560981 TGAAACATTT
*
154560991 ACCTAACCCATTATCAT-GAA-ACTT--T-
1 ACCTAACCCATTATCATGGAACATTTCCTA
154561016 ACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTAACCCATTATCATGGAACATTT-CCTA
* *
154561047 ACCTAACCTATTATCATGAAACA-TT--T-
1 ACCTAACCCATTATCATGGAACATTTCCTA
154561073 ACCTAACCCATTATCATGGAACATTTGCCTA
1 ACCTAACCCATTATCATGGAACATTT-CCTA
154561104 ACCTA
1 ACCTA
154561109 TTATCAATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 16
0.79 0.05 0.16
Matches are distributed among these distances:
25 17 0.22
26 24 0.31
27 6 0.08
30 4 0.05
31 26 0.34
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.31
Consensus pattern (30 bp):
ACCTAACCCATTATCATGGAACATTTCCTA
Found at i:154561090 original size:57 final size:56
Alignment explanation
Indices: 154560991--154561108 Score: 209
Period size: 57 Copynumber: 2.1 Consensus size: 56
154560981 TGAAACATTT
154560991 ACCTAACCCATTATCATGAAACTTTACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTAACCCATTATCATGAAACTTTACCTAACCCATTATCATGGAACATTTACCTA
* *
154561047 ACCTAACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTGCCTA
1 ACCTAACCCATTATCATGAAAC-TTTACCTAACCCATTATCATGGAACATTTACCTA
154561104 ACCTA
1 ACCTA
154561109 TTATCAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 21 0.36
57 38 0.64
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.31
Consensus pattern (56 bp):
ACCTAACCCATTATCATGAAACTTTACCTAACCCATTATCATGGAACATTTACCTA
Found at i:154565062 original size:136 final size:137
Alignment explanation
Indices: 154564818--154565103 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
154564808 CATTGGGCCT
** * *
154564818 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154564883 AGCCCCTTATTCAGATAACAGTATGGTCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154564947 CATATGC
131 CATATGC
*
154564954 AAGCCCATTTGGGTAACAGTGATACTGGGCTAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154565019 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154565084 CATATGC
131 CATATGC
154565091 AAGCCCATTTGGG
1 AAGCCCATTTGGG
154565104 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 120 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:154567454 original size:40 final size:40
Alignment explanation
Indices: 154567409--154567526 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
154567399 CGGAATATAA
154567409 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154567449 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154567489 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTA
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTA
154567527 ACTTTCCAGC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154569407 original size:93 final size:93
Alignment explanation
Indices: 154569293--154569463 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
154569283 GCCCATAAGT
* * *
154569293 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154569358 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
154569386 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154569451 CGAGTTCGGATGC
66 CGAGTTCGGATGC
154569464 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:154569479 original size:46 final size:46
Alignment explanation
Indices: 154569285--154569465 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
154569275 TGTAACCCGC
* * *
154569285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
154569331 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
154569381 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
154569424 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
154569466 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:154572454 original size:26 final size:26
Alignment explanation
Indices: 154572418--154572558 Score: 192
Period size: 26 Copynumber: 5.2 Consensus size: 26
154572408 CATGATATTC
154572418 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
154572444 TTATCATGAAACCTTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
154572470 TTATCATGGAACATTTACCTAACCTAACCTA
1 TTATCATGAAACATTTACCTAA-C---CC-A
154572501 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
154572527 TTATCATGGAACATTTGCCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
154572553 TTATCA
1 TTATCA
154572559 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
26 75 0.73
27 3 0.03
30 3 0.03
31 22 0.21
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:154572518 original size:57 final size:57
Alignment explanation
Indices: 154572434--154572552 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 57
154572424 TGAAACATTT
*
154572434 ACCTAACCCATTATCATGAAACCTTTACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
* *
154572491 ACCTAACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTGCCTA
1 ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
154572548 ACCTA
1 ACCTA
154572553 TTATCAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.30
Consensus pattern (57 bp):
ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
Found at i:154576508 original size:136 final size:137
Alignment explanation
Indices: 154576264--154576549 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
154576254 CATTGGGCCT
** * *
154576264 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154576329 AGCCCCTTATTCAGATAACAGTATGGTCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154576393 CATATGC
131 CATATGC
*
154576400 AAGCCCATTTGGGTAACAGTGATACTGGGCTAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154576465 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154576530 CATATGC
131 CATATGC
154576537 AAGCCCATTTGGG
1 AAGCCCATTTGGG
154576550 GAGACTACTC
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 120 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:154578900 original size:40 final size:40
Alignment explanation
Indices: 154578855--154578972 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
154578845 CGGAATATAA
154578855 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154578895 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154578935 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTA
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTA
154578973 ACTTTCCAGC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154580853 original size:93 final size:93
Alignment explanation
Indices: 154580739--154580909 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
154580729 GCCCATAAGT
* * *
154580739 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154580804 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
154580832 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
154580897 CGAGTTCGGATGC
66 CGAGTTCGGATGC
154580910 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:154580925 original size:46 final size:46
Alignment explanation
Indices: 154580731--154580911 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
154580721 TGTAACCCGC
* * *
154580731 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
154580777 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
154580827 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
154580870 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
154580912 AACCATCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:154589219 original size:40 final size:40
Alignment explanation
Indices: 154589174--154589341 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
154589164 CGGAATATAA
154589174 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154589214 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
154589254 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
154589294 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
154589334 CCGGATAT
1 CCGGATAT
154589342 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154591912 original size:26 final size:26
Alignment explanation
Indices: 154591876--154592016 Score: 192
Period size: 26 Copynumber: 5.2 Consensus size: 26
154591866 CATGATATTC
154591876 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
154591902 TTATCATGAAACCTTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
154591928 TTATCATGGAACATTTACCTAACCTAACCTA
1 TTATCATGAAACATTTACCTAA-C---CC-A
154591959 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
154591985 TTATCATGGAACATTTGCCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
154592011 TTATCA
1 TTATCA
154592017 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
26 75 0.73
27 3 0.03
30 3 0.03
31 22 0.21
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:154591976 original size:57 final size:57
Alignment explanation
Indices: 154591892--154592010 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 57
154591882 TGAAACATTT
*
154591892 ACCTAACCCATTATCATGAAACCTTTACCTAACCCATTATCATGGAACATTTACCTA
1 ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
* *
154591949 ACCTAACCTATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTGCCTA
1 ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
154592006 ACCTA
1 ACCTA
154592011 TTATCAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.30
Consensus pattern (57 bp):
ACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTA
Found at i:154595961 original size:135 final size:137
Alignment explanation
Indices: 154595718--154596002 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
154595708 CATTGGGCCT
** *
154595718 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
154595783 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154595847 CATATGC
131 CATATGC
154595854 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
154595918 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
154595983 CATATGC
131 CATATGC
154595990 AAGCCCATTTGGG
1 AAGCCCATTTGGG
154596003 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 93 0.65
136 51 0.35
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:154597823 original size:26 final size:26
Alignment explanation
Indices: 154597787--154597922 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
154597777 CATGATATTC
154597787 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
154597813 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
154597839 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
154597865 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
154597891 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
154597917 TTATCA
1 TTATCA
154597923 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:154601869 original size:39 final size:40
Alignment explanation
Indices: 154601761--154601944 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
154601751 TCGAATGATG
* *
154601761 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
154601801 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
154601841 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
154601880 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
154601920 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
154601945 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 8 0.06
39 51 0.40
40 60 0.47
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:154609683 original size:40 final size:40
Alignment explanation
Indices: 154609491--154609676 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
154609481 TCGAATGATG
* * *
154609491 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
154609531 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
154609571 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
154609611 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
154609652 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
154609677 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:154609683 original size:80 final size:80
Alignment explanation
Indices: 154609491--154609709 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 80
154609481 TCGAATGATG
* * **
154609491 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
154609555 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
154609571 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
154609634 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* **
154609652 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
154609710 TACGTGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
79 17 0.14
80 93 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:154612883 original size:40 final size:40
Alignment explanation
Indices: 154612686--154612876 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
154612676 CGAATGATGT
* * ** *
154612686 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTATAA
* * *
154612726 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTATA-A
*
154612766 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAA
* *
154612804 TCCGAGTTAAGTCCCGAAGGCATTT-ATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTATAA
* *
154612845 CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
154612877 AGCTATATCC
Statistics
Matches: 129, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
39 35 0.27
40 83 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAA
Found at i:154612892 original size:79 final size:78
Alignment explanation
Indices: 154612686--154612902 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 78
154612676 CGAATGATGT
* * *
154612686 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAGCTATATCCGG-TTAAG-TCCGAAGGCATTT
* *
154612750 GTGCGAGTTACTAATT
63 ATGCGAGTTACTAATA
*
154612766 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGAGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCCG-GTTAAGT-CCGAAGGCATTT
154612829 ATGCGAGTTACT-ATAA
63 ATGCGAGTTACTAAT-A
* ** *
154612845 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
154612903 TACGTGATTC
Statistics
Matches: 118, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTATG
CGAGTTACTAATA
Found at i:154617663 original size:20 final size:20
Alignment explanation
Indices: 154617638--154617711 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
154617628 TTTAAGAGAC
154617638 ACACACCCGTGTGGCTTGGA
1 ACACACCCGTGTGGCTTGGA
154617658 ACACACCCGTGTGGCTTGGA
1 ACACACCCGTGTGGCTTGGA
154617678 ACACACCCGTGTGGCTTGGA
1 ACACACCCGTGTGGCTTGGA
* *
154617698 ACACGCCCGCGTGG
1 ACACACCCGTGTGG
154617712 GAAGGCCGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTGGA
Found at i:154618997 original size:42 final size:42
Alignment explanation
Indices: 154618926--154619022 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 42
154618916 ATAGCCCAAC
* * * *
154618926 TATGGTCTTATACGAAGTCTCATATTGATGCCATATCCCAGA
1 TATGGTCTTACACGAAATCACATAATGATGCCATATCCCAGA
* *
154618968 TATGGTCTTACATGAAATCACATAATGATGCCATATCCCATA
1 TATGGTCTTACACGAAATCACATAATGATGCCATATCCCAGA
154619010 TATGGTCTTACAC
1 TATGGTCTTACAC
154619023 ATAGTCTCGG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCACATAATGATGCCATATCCCAGA
Found at i:154621522 original size:29 final size:29
Alignment explanation
Indices: 154621488--154621590 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
154621478 TACTCGATTT
* * *
154621488 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
154621517 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
154621546 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
154621575 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
154621591 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:154622794 original size:20 final size:20
Alignment explanation
Indices: 154622753--154622805 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
154622743 AATGAACACT
*
154622753 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
154622771 TTTTTCTTCATATTCTCTTT-
1 TTTTTCTTCAT-TTCTCTTTG
*
154622791 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
154622806 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:154629389 original size:29 final size:29
Alignment explanation
Indices: 154629355--154629457 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
154629345 TACTCGATTT
* * *
154629355 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
154629384 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
154629413 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
154629442 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
154629458 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:154630650 original size:19 final size:17
Alignment explanation
Indices: 154630616--154630670 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 17
154630606 GAATGAACAC
*
154630616 TTTTTTT-TTCTTTTCT
1 TTTTTTTCTTCATTTCT
154630632 TTGTTTTTCTTCATATTCT
1 TT-TTTTTCTTCAT-TTCT
*
154630651 CTTTTTTTTTTCATTTCT
1 -TTTTTTTCTTCATTTCT
154630669 TT
1 TT
154630671 ATTCTTCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 8 0.24
19 14 0.42
20 2 0.06
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTTTCTTCATTTCT
Found at i:154638702 original size:80 final size:80
Alignment explanation
Indices: 154638618--154638766 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
154638608 TATGGTAACC
* * * *
154638618 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
154638682 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
154638698 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
154638763 CCGG
66 CCGG
154638767 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:154638708 original size:40 final size:38
Alignment explanation
Indices: 154638659--154638766 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
154638649 ATCACGATTT
*
154638659 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
154638699 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
154638739 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
154638767 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:154646797 original size:80 final size:80
Alignment explanation
Indices: 154646713--154646861 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
154646703 TATGGTAACC
* * * *
154646713 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
154646777 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
154646793 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
154646858 CCGG
66 CCGG
154646862 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:154646803 original size:40 final size:38
Alignment explanation
Indices: 154646754--154646861 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
154646744 ATCACGATTT
*
154646754 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
154646794 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
154646834 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
154646862 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:154653868 original size:43 final size:43
Alignment explanation
Indices: 154653713--154653869 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
154653703 TGTGTTATCG
* * * * *
154653713 TGTAAAACCACATCTGGGACGTTGGCATCAACT-TATGATTTACG
1 TGTAAGACCACGTATGGGACGTTGGCATCAA-TATTTGA-TTACA
* * * *
154653757 TGTAAGACCACG-ACTGGGACATTGGTATC-GTATTTGATTTCA
1 TGTAAGACCACGTA-TGGGACGTTGGCATCAATATTTGATTACA
** * *
154653799 TGTAAGACCTTGTCTGGAACAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCACGTATGGGAC-GTTGGCATCAATATTTGATTACA
*
154653842 TGTAAGACGACGTATGGGACGTTGGCAT
1 TGTAAGACCACGTATGGGACGTTGGCAT
154653870 TGTACGAGCT
Statistics
Matches: 85, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
42 26 0.31
43 36 0.42
44 23 0.27
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTATGGGACGTTGGCATCAATATTTGATTACA
Found at i:154655785 original size:17 final size:18
Alignment explanation
Indices: 154655765--154655800 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
154655755 ATGTTATACT
154655765 ATGTG-TAATTGCTTATA
1 ATGTGTTAATTGCTTATA
154655782 ATGTGTTTAATTGCTTATA
1 ATGTG-TTAATTGCTTATA
154655801 TGAGTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
19 12 0.71
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
ATGTGTTAATTGCTTATA
Found at i:154665468 original size:23 final size:23
Alignment explanation
Indices: 154665438--154665484 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
154665428 GAAAACCTAG
154665438 TAAGCATTTAATGCTTAGTAAGT
1 TAAGCATTTAATGCTTAGTAAGT
*
154665461 TAAGCATTTAATGCTTAGTTAGT
1 TAAGCATTTAATGCTTAGTAAGT
154665484 T
1 T
154665485 CGTATAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.43
Consensus pattern (23 bp):
TAAGCATTTAATGCTTAGTAAGT
Found at i:154669124 original size:40 final size:40
Alignment explanation
Indices: 154669069--154669278 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
154669059 AACATTGGAA
154669069 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154669109 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154669149 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
154669189 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
154669228 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
154669269 CTATATCCGG
1 ATATATCCGG
154669279 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:154677255 original size:40 final size:40
Alignment explanation
Indices: 154677200--154677409 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
154677190 AACATTGGAA
154677200 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154677240 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
154677280 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
154677320 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
154677359 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
154677400 CTATATCCGG
1 ATATATCCGG
154677410 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:154683322 original size:39 final size:39
Alignment explanation
Indices: 154683270--154683429 Score: 232
Period size: 39 Copynumber: 4.1 Consensus size: 39
154683260 AATTATATTA
* *
154683270 CCAGCACAAAGCCTGCAGAACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTT
* *
154683309 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTT
154683348 CCAGCACGAAGCCTGC-GAGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGA-ACTTTAGCCCGGATACATTT
* * * *
154683387 CTAGCACAAAGCCTGCGGGACCTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTT
154683426 CCAG
1 CCAG
154683430 TGTCTTGAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 106 0.98
40 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGAACTTTAGCCCGGATACATTT
Found at i:154683399 original size:78 final size:78
Alignment explanation
Indices: 154683270--154683429 Score: 259
Period size: 78 Copynumber: 2.1 Consensus size: 78
154683260 AATTATATTA
* *
154683270 CCAGCACAAAGCCTGCAGAACTTTAGCCCGGATACATTTCCAACACGAAGCCTGCGGGACTTTAG
1 CCAGCACAAAGCCTGCAGAACTTTAGCCCGGATACATTTCCAACACAAAGCCTGCGGGACCTTAG
154683335 CCCGGATACATTT
66 CCCGGATACATTT
* * *
154683348 CCAGCACGAAGCCTGC-GAGACTTTAGCCCGGATACATTTCTAGCACAAAGCCTGCGGGACCTTA
1 CCAGCACAAAGCCTGCAGA-ACTTTAGCCCGGATACATTTCCAACACAAAGCCTGCGGGACCTTA
154683412 GCCCGGATACATTT
65 GCCCGGATACATTT
154683426 CCAG
1 CCAG
154683430 TGTCTTGAAT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.03
78 74 0.97
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (78 bp):
CCAGCACAAAGCCTGCAGAACTTTAGCCCGGATACATTTCCAACACAAAGCCTGCGGGACCTTAG
CCCGGATACATTT
Found at i:154686517 original size:29 final size:29
Alignment explanation
Indices: 154686476--154686662 Score: 148
Period size: 28 Copynumber: 6.5 Consensus size: 29
154686466 GATCTCATTT
* *
154686476 CACACACTTAGTGCCCCAACAACCGATCTCA
1 CACACAC--AGTGCCTCAACAACCGATCTCG
**** ** *
154686507 CACACACAGTG-CTCGGTTACAAAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
154686535 CACACACAGTGACTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*** *
154686564 CACACACAGTG-CTCAGTTA-CGAAACTCG
1 CACACACAGTGCCTCAACAACCG-ATCTCG
154686592 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*** * *
154686621 CACACACAGTG-CTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
154686649 CACACACAGTGCCT
1 CACACACAGTGCCT
154686663 ATGTTCACTT
Statistics
Matches: 122, Mismatches: 29, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
27 2 0.02
28 63 0.52
29 48 0.39
30 2 0.02
31 7 0.06
ACGTcount: A:0.32, C:0.37, G:0.16, T:0.16
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:154686541 original size:28 final size:28
Alignment explanation
Indices: 154686497--154686660 Score: 168
Period size: 28 Copynumber: 5.8 Consensus size: 28
154686487 TGCCCCAACA
* * *
154686497 ACCGATCTCACACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
** ***
154686525 ACAAAACTCGCACACACAGTGACTCAACA
1 ACCGAACTCGCACACACAGTG-CTCAGTT
*
154686554 ACCGATCTCGCACACACAGTGCTCAGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
***
154686582 A-CGAAACTCGCACACACAGTGCCTCAACA
1 ACCG-AACTCGCACACACAGTG-CTCAGTT
*
154686611 ACCGATCTCGCACACACAGTGCTCAGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
*
154686639 ACGGAACTCGCACACACAGTGC
1 ACCGAACTCGCACACACAGTGC
154686661 CTATGTTCAC
Statistics
Matches: 108, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
27 2 0.02
28 62 0.57
29 42 0.39
30 2 0.02
ACGTcount: A:0.32, C:0.36, G:0.16, T:0.16
Consensus pattern (28 bp):
ACCGAACTCGCACACACAGTGCTCAGTT
Found at i:154686660 original size:57 final size:57
Alignment explanation
Indices: 154686476--154686662 Score: 302
Period size: 57 Copynumber: 3.2 Consensus size: 57
154686466 GATCTCATTT
* * * *
154686476 CACACACTTAGTGCCCCAACAACCGATCTCACACACACAGTGCTCGGTTACAAAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
*
154686535 CACACACAGTGACTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
*
154686592 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
154686649 CACACACAGTGCCT
1 CACACACAGTGCCT
154686663 ATGTTCACTT
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
57 114 0.94
59 7 0.06
ACGTcount: A:0.32, C:0.37, G:0.16, T:0.16
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCAGTTACGAAACTCG
Found at i:154688947 original size:38 final size:39
Alignment explanation
Indices: 154688896--154689052 Score: 257
Period size: 38 Copynumber: 4.1 Consensus size: 39
154688886 AATTATATTA
*
154688896 CCAGCACAAAGCCTGC-GGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
154688934 CCAACACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
154688973 CCAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
154689011 CTAGCAC-AAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
154689049 CCAG
1 CCAG
154689053 TGTCTTGAAT
Statistics
Matches: 110, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
37 8 0.07
38 66 0.60
39 36 0.33
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Done.