Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 50 of 770
Found at i:14331767 original size:45 final size:45
Alignment explanation
Indices: 14331713--14331877 Score: 224
Period size: 45 Copynumber: 3.6 Consensus size: 45
14331703 TATGAGAGCT
* * *
14331713 AGTGTAAGACGATGTCTAGGACATGGCATTGGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGTC
*
14331758 AGTGTAAGACCATGTTTGGGACATGGCATTGACTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGTC
* *
14331803 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTA-ATGTGTGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGT---C
*
14331850 GAGTGTAAGACCATGTCCGGGACATGGC
1 -AGTGTAAGACCATGTCTGGGACATGGC
14331878 GTCGACACCT
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
44 6 0.06
45 75 0.69
47 1 0.01
48 26 0.24
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATATGTGTC
Found at i:14333176 original size:2 final size:2
Alignment explanation
Indices: 14333169--14333202 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14333159 TGGAAGATTG
14333169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14333203 GCTAAGCACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14336985 original size:14 final size:14
Alignment explanation
Indices: 14336966--14336992 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14336956 TGAGTGCATG
14336966 ATAATTTTAGCGAA
1 ATAATTTTAGCGAA
14336980 ATAATTTTAGCGA
1 ATAATTTTAGCGA
14336993 TTGCTTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (14 bp):
ATAATTTTAGCGAA
Found at i:14337729 original size:30 final size:30
Alignment explanation
Indices: 14337671--14337729 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14337661 TTTACGAGCC
**
14337671 TAGGGGCAAAATCATAATTTTGTGAAAGTT
1 TAGGGGCAAAATCATAATTTTGCCAAAGTT
** *
14337701 TAGGGGCAAAATGGTTATTTTGCCAAAGT
1 TAGGGGCAAAATCATAATTTTGCCAAAGT
14337730 ATGAATTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATCATAATTTTGCCAAAGTT
Found at i:14339871 original size:43 final size:43
Alignment explanation
Indices: 14339809--14339894 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
14339799 GTTACATGAA
*
14339809 TCGCATCCATTATAGACTCGGACCTCTCAACGAGC-CTGGATGC
1 TCGCATCCATAATAGACTCGGACCTCTCAACGAGCTC-GGATGC
*
14339852 TCGCATCCATAAT-GAACTCGGACCTTTCAACGAGCTCGGATGC
1 TCGCATCCATAATAG-ACTCGGACCTCTCAACGAGCTCGGATGC
14339895 CACATATCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATAGACTCGGACCTCTCAACGAGCTCGGATGC
Found at i:14349808 original size:17 final size:17
Alignment explanation
Indices: 14349788--14349826 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
14349778 CTTTTATTAA
14349788 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
*
14349805 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTC
14349822 GTTTT
1 GTTTT
14349827 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:14352653 original size:13 final size:13
Alignment explanation
Indices: 14352635--14352671 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
14352625 TAAAATGAAC
14352635 TAAAAGACAAAAT
1 TAAAAGACAAAAT
14352648 TAAAAGACAAAAT
1 TAAAAGACAAAAT
*
14352661 TAAAAGCCAAA
1 TAAAAGACAAA
14352672 TGTGTCCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.68, C:0.11, G:0.08, T:0.14
Consensus pattern (13 bp):
TAAAAGACAAAAT
Found at i:14356348 original size:20 final size:20
Alignment explanation
Indices: 14356325--14356366 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14356315 GAAATTGTAA
14356325 GTTCATATGATTTTTAAGGT
1 GTTCATATGATTTTTAAGGT
14356345 GTTCATATGATTTTTAAGGT
1 GTTCATATGATTTTTAAGGT
14356365 GT
1 GT
14356367 ACTTTCAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTCATATGATTTTTAAGGT
Found at i:14357271 original size:30 final size:30
Alignment explanation
Indices: 14357235--14357296 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
14357225 AAGTTCTAGT
14357235 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
14357265 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAGTAGGATCAGAG
14357295 TG
1 TG
14357297 CGCAGCGGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.37, T:0.27
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAGTAGGATCAGAG
Found at i:14358277 original size:27 final size:27
Alignment explanation
Indices: 14358246--14358301 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
14358236 TAGAATACTT
14358246 TGGTTTACAAAATTACCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
** *
14358273 TGGTTTGTAAAATTATCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
14358300 TG
1 TG
14358302 TAAGGTAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
TGGTTTACAAAATTACCAAAATACCCC
Found at i:14358321 original size:27 final size:27
Alignment explanation
Indices: 14358256--14358453 Score: 186
Period size: 27 Copynumber: 7.3 Consensus size: 27
14358246 TGGTTTACAA
* ** *
14358256 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAAGGTAG
* *
14358283 AATTATCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
14358310 AAATACCGAAATACCCCTGT-AGTTTAG
1 AATTACCGAAATACCCCTGTAAG-GTAG
** *
14358337 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
14358364 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
14358391 AAATACCTAAATACCCCTGT-AGGATAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* *
14358418 AATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
14358445 AATTACCGA
1 AATTACCGA
14358454 GATAACCTTG
Statistics
Matches: 139, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.04
27 129 0.93
28 4 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:14358391 original size:81 final size:81
Alignment explanation
Indices: 14358256--14358474 Score: 262
Period size: 81 Copynumber: 2.7 Consensus size: 81
14358246 TGGTTTACAA
* ** * * * *
14358256 AATTACCAAAATACCCCTGGT-TTGTAAAATTATCAAAATACCCCTGTAAGGTAGAAATACCGAA
1 AATTACTAAAATACCCCT-GTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAA
**
14358320 ATACCCCTGTAGTTTAG
65 ATACCCCTGTAGGATAG
* *
14358337 AATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCTAAA
1 AATTACTAAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
14358402 TACCCCTGTAGGATAG
66 TACCCCTGTAGGATAG
* * * * * *
14358418 AATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATAACCTTGTGGGGTA-AAAT
1 AATTACTAAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAAT
14358475 TACCATTTTA
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 6 0.05
81 114 0.95
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (81 bp):
AATTACTAAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGATAG
Found at i:14358470 original size:27 final size:27
Alignment explanation
Indices: 14358291--14358478 Score: 164
Period size: 27 Copynumber: 7.0 Consensus size: 27
14358281 AAAATTATCA
* * *
14358291 AAATACCCCTGTAAGGTAGAAATACCG
1 AAATAACCCTGTAGGGTAGAATTACCG
* ** **
14358318 AAATACCCCTGTAGTTTAGAATTACTA
1 AAATAACCCTGTAGGGTAGAATTACCG
* *
14358345 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATAACCCTGTAGGGTAGAATTACCG
* *
14358372 AAAT-ACCCTTGTAGGGTAGAAATACCT
1 AAATAACCC-TGTAGGGTAGAATTACCG
* * *
14358399 AAATACCCCTGTAGGATAGAATTACTG
1 AAATAACCCTGTAGGGTAGAATTACCG
*
14358426 AAAT-ACTCCTGTAAGGTAGAATTACCG
1 AAATAAC-CCTGTAGGGTAGAATTACCG
* * * *
14358453 AGATAACCTTGTGGGGTAAAATTACC
1 AAATAACCCTGTAGGGTAGAATTACC
14358479 ATTTTACCCT
Statistics
Matches: 128, Mismatches: 29, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
26 4 0.03
27 119 0.93
28 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATAACCCTGTAGGGTAGAATTACCG
Found at i:14359021 original size:6 final size:6
Alignment explanation
Indices: 14358990--14359046 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
14358980 TTGCATTCAC
* *
14358990 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
14359038 AGTTCTG AT
1 A-TTCTG AT
14359047 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:14360043 original size:64 final size:64
Alignment explanation
Indices: 14359963--14360146 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
14359953 AGACATTATG
* ** *
14359963 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTATACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTATACCATGTAGACAAGAGAGCTACCAGATAA
* * * * * *
14360027 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACCAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTATACCATGTAGACAAGAGAGCTACCAGAT
14360092 AA
63 AA
* *
14360094 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGT-TCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTAT-ACCATGTAG-ACAAGAGAGC
14360147 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 29 0.30
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTATACCATGTAGACAAGAGAGCTACCAGATAA
Found at i:14361239 original size:2 final size:2
Alignment explanation
Indices: 14361232--14361262 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14361222 TCATGACATG
14361232 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14361263 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14363104 original size:45 final size:44
Alignment explanation
Indices: 14363014--14363144 Score: 183
Period size: 45 Copynumber: 3.0 Consensus size: 44
14363004 CCAAATTTAT
* * *
14363014 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCGAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
* *
14363057 TCACCGGCATTATAGCCTGCTATGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
*
14363102 TCACCAGCATTATAGCCTGCTAGGCTTCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGC-TCAAGGCCCGAATAATA
14363145 CTGTACAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
43 11 0.14
44 13 0.17
45 51 0.66
46 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:14368917 original size:40 final size:40
Alignment explanation
Indices: 14368858--14368999 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
14368848 AAATTGAATG
* * *
14368858 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
14368898 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
14368938 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
14368978 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
14369000 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:14369000 original size:40 final size:39
Alignment explanation
Indices: 14368897--14369025 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
14368887 TGCTGGAAAT
* * *
14368897 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
14368937 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
14368977 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
14369017 TATATCCGG
1 TATATCCGG
14369026 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:14375566 original size:17 final size:17
Alignment explanation
Indices: 14375541--14375581 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
14375531 TAGAAATGAT
*
14375541 AAAATAAGAGTATG-GAA
1 AAAAAAAGAG-ATGAGAA
14375558 AAAAAAAGAGATGAGAA
1 AAAAAAAGAGATGAGAA
14375575 AAAAAAA
1 AAAAAAA
14375582 AAAAGTGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.14
17 19 0.86
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.10
Consensus pattern (17 bp):
AAAAAAAGAGATGAGAA
Found at i:14377030 original size:39 final size:40
Alignment explanation
Indices: 14376867--14377032 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
14376857 AAATTGAATG
* * **
14376867 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
14376906 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
14376946 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
14376986 CTATCCGGGCTAAGA-CCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
14377025 ATATCCGG
1 ATATCCGG
14377033 TTATATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 40 0.38
40 64 0.61
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:14383910 original size:24 final size:24
Alignment explanation
Indices: 14383883--14383981 Score: 189
Period size: 24 Copynumber: 4.1 Consensus size: 24
14383873 GCTTATTATG
*
14383883 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
14383907 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
14383931 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
14383955 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
14383979 ATC
1 ATC
14383982 TTCTACCCCT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.18
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:14398078 original size:14 final size:16
Alignment explanation
Indices: 14398054--14398086 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
14398044 ATTTTTTGTG
14398054 TTTATTATGTGT-GAA
1 TTTATTATGTGTGGAA
14398069 TTTA-TATGTGTGGAA
1 TTTATTATGTGTGGAA
14398084 TTT
1 TTT
14398087 TTGTGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGGAA
Found at i:14398408 original size:10 final size:11
Alignment explanation
Indices: 14398378--14398407 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
14398368 GTTCTTGCCG
14398378 AATACAAAAGAA
1 AATA-AAAAGAA
14398390 AATAAAAAGAA
1 AATAAAAAGAA
14398401 AATAAAA
1 AATAAAA
14398408 GGGTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AATAAAAAGAA
Found at i:14404173 original size:101 final size:101
Alignment explanation
Indices: 14404044--14404233 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 101
14404034 GAAGCTCTCT
* * * * * * *
14404044 GGTAGGCATAGTAGTCTGCACTTAGTACTACACACGTGACTTATCCATCTGATACACATAGTAGC
1 GGTACGCATAGTAGCCAGCACTTAGTACTACACACGCGACCTAACAATCTGATACACATAGTAGC
14404109 CTGCACTTAGTACCACACACGTGATCAAAGTTAATG
66 CTGCACTTAGTACCACACACGTGATCAAAGTTAATG
* * *
14404145 GGTACGCATAGTAGCCAGCACTTCGTACTACACATGCGACCTAACAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCAGCACTTAGTACTACACACGCGACCTAACAATCTGATACACATAGTAGC
*
14404210 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACCACACACGTGA
14404234 CCTAAAACTG
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
GGTACGCATAGTAGCCAGCACTTAGTACTACACACGCGACCTAACAATCTGATACACATAGTAGC
CTGCACTTAGTACCACACACGTGATCAAAGTTAATG
Found at i:14404236 original size:50 final size:50
Alignment explanation
Indices: 14404041--14404238 Score: 218
Period size: 50 Copynumber: 3.9 Consensus size: 50
14404031 ACCGAAGCTC
** * * * *
14404041 TCTGGTAGGCATAGTAGTCTGCACTTAGTACTACACACGTGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * *
14404091 TCTGATACACATAGTAGCCTGCACTTAGTACCACACACGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* * * * * *
14404143 T-GGGTACGCATAGTAGCCAGCACTTCGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
14404192 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
14404239 AACTGTCTTA
Statistics
Matches: 117, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
49 3 0.03
50 77 0.66
51 35 0.30
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:14404664 original size:19 final size:20
Alignment explanation
Indices: 14404636--14404682 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14404626 AAGAACATGT
14404636 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
14404657 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
14404676 TATATAT
1 TATATAT
14404683 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:14407099 original size:27 final size:27
Alignment explanation
Indices: 14407069--14407276 Score: 229
Period size: 27 Copynumber: 7.7 Consensus size: 27
14407059 TACTGAAATG
* * *
14407069 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
14407096 CCCTCGA-TTATAGAATTACTGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
** * *
14407122 CCCTAAATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
14407149 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
14407176 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
14407203 CTCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * **
14407230 CCCTTGATTTGTAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
14407257 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
14407277 TAAAATACCC
Statistics
Matches: 148, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.14
27 128 0.86
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:14407229 original size:81 final size:81
Alignment explanation
Indices: 14407069--14407277 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 81
14407059 TACTGAAATG
*
14407069 CCCTCAATTTGTAGAATTACCATTTTACCCTCGA-TTATAGAATTACTGTTTCACCCTAAATTTA
1 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTAAATTTA
**
14407133 CAGAATTACTGTTTTA
66 CAGAATTACCATTTTA
* * * **
14407149 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTA-TCGTTTTACTCTCGATTT
1 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACT-GTTTCACCCTAAATTT
14407213 ACAGAATTACCATTTTA
65 ACAGAATTACCATTTTA
* *** * *
14407230 CCCTTGATTTGTAGAATTATTGTTTTACCCTCGATTTACAAAATTACT
1 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACT
14407278 AAAATACCCT
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 33 0.30
81 77 0.69
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTCACCCTAAATTTA
CAGAATTACCATTTTA
Found at i:14407295 original size:81 final size:81
Alignment explanation
Indices: 14407069--14407332 Score: 207
Period size: 81 Copynumber: 3.3 Consensus size: 81
14407059 TACTGAAATG
* * * * * **
14407069 CCCTCAATTTGTAGAATTACCATTTTACCCTCGA-TTATAGAATTA-CTGT-TTCACCCTAAATT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATC-GTAAT-ACCCTCGATT
**
14407131 TACAGAATTACTGTTTTA
64 TACAGAATTACCATTTTA
* * ** *
14407149 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACTCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTA
14407214 CAGAATTACCATTTTA
66 CAGAATTACCATTTTA
* * *** * *
14407230 CCCTTGATTTGTAGAATTATTGTTTTACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGGTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGATT
* ***
14407293 TACAAAATTACCAAAATA
64 TACAGAATTACCATTTTA
*
14407311 CCCTCGA-TTAGTAAAATTACCA
1 CCCTCGATTTA-TAGAATTACCA
14407333 AAATACCCTG
Statistics
Matches: 149, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.01
80 35 0.23
81 110 0.74
82 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATTTA
CAGAATTACCATTTTA
Found at i:14407313 original size:54 final size:54
Alignment explanation
Indices: 14407255--14407565 Score: 231
Period size: 54 Copynumber: 5.7 Consensus size: 54
14407245 ATTATTGTTT
* **
14407255 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * *
14407309 TACCCTCGA-TTAGTAAAATTACCAAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* ** * *
14407362 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *** * * ***
14407416 TACTACT-GGTTTGTGAAATTACCGAAATATCCTCAATTTGTAAAATTACCAAAA
1 TAC-CCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * *
14407470 TACCCTTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGATTTACAAAATTACCA-AAATACCCTTG-GTTTGT-AAAATTACCA-AAA
* * **
14407526 TACCAT-TAGTTTACAAAATTACTGAAATACCCTTGGTTTG
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTGGTTTG
14407566 AAGATTTGCC
Statistics
Matches: 203, Mismatches: 41, Indels: 25
0.75 0.15 0.09
Matches are distributed among these distances:
52 2 0.01
53 46 0.23
54 107 0.53
55 10 0.05
56 38 0.19
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:14407340 original size:81 final size:80
Alignment explanation
Indices: 14407255--14407558 Score: 231
Period size: 80 Copynumber: 3.7 Consensus size: 80
14407245 ATTATTGTTT
* *
14407255 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-T
1 TACCCT-GATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCT-GAGT
14407319 TAGTAAAATTACCAAAA
64 TAGTAAAATTACCAAAA
* * * * * ** * *
14407336 TACCCTGGTCTGTAAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTAGTTT
1 TACCCTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTGAGTTA
*
14407401 GTAAAGTTACCAAAA
66 GTAAAATTACCAAAA
* * ** ** * * * ** *
14407416 TACTACTGGTTTGTGAAATTACCGAAATATCCTCAATTTGTAAAATTACCAAAATACCCTTGATT
1 TAC-CCTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCC-TGAGT
*
14407481 TA-CAAAATTA-CAGAAA
64 TAGTAAAATTACCA-AAA
* **
14407497 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAATACCCT
1 TACCC-TGA-TTTGC--AAAATTACTA-AAATACCCTTAGTTTACAAAATTACCAAAATACCCT
14407559 TGGTTTGAAG
Statistics
Matches: 173, Mismatches: 41, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
79 1 0.01
80 66 0.38
81 65 0.38
82 8 0.05
83 33 0.19
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
TACCCTGATTTGCAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTGAGTTA
GTAAAATTACCAAAA
Found at i:14407564 original size:27 final size:27
Alignment explanation
Indices: 14407255--14407564 Score: 207
Period size: 27 Copynumber: 11.4 Consensus size: 27
14407245 ATTATTGTTT
* * * *
14407255 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
14407282 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
14407309 TACCC-TCGATTAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
14407336 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
14407362 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
14407389 TACCCTTAGTTTGTAAAGTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
14407416 TACTAC-TGGTTTGTGAAATTACCGAAA
1 TAC-CCTTGGTTTATAAAATTACCAAAA
* *** *
14407443 TATCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
14407470 TACCCTTGATTTACAAAATTA-CAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * *
14407497 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * * **
14407526 TACCATTAGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
14407553 TACCCTTGGTTT
1 TACCCTTGGTTT
14407565 GAAGATTTGC
Statistics
Matches: 228, Mismatches: 47, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
26 25 0.11
27 177 0.78
28 8 0.04
29 18 0.08
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:14407641 original size:27 final size:27
Alignment explanation
Indices: 14407609--14407660 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
14407599 GACTACAATA
14407609 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
14407636 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
14407661 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:14408413 original size:20 final size:20
Alignment explanation
Indices: 14408388--14408454 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
14408378 GATATGATAT
*
14408388 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
14408408 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
14408428 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
14408448 ACATGAT
1 ACATGAT
14408455 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:14408601 original size:25 final size:26
Alignment explanation
Indices: 14408504--14408634 Score: 198
Period size: 26 Copynumber: 5.2 Consensus size: 26
14408494 GAGGAAGTGC
14408504 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
14408530 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
14408556 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
14408582 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
14408607 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
14408630 AAAAG
1 AAAAG
14408635 AGGTTAGGCC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 5 0.05
24 4 0.04
25 31 0.32
26 58 0.59
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:14408843 original size:42 final size:42
Alignment explanation
Indices: 14408775--14408863 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
14408765 TCTCCCCAAT
* *
14408775 TGGGCTTGCATACATTCATTGGTATTTCATGTGATATTGAAA
1 TGGGCTTGCATACATTCATTGATATTTCATGTGATATTAAAA
* *
14408817 TGGGCTTGCATACATTCGTTGATATTTCATGTGTTATTAAAA
1 TGGGCTTGCATACATTCATTGATATTTCATGTGATATTAAAA
14408859 TGGGC
1 TGGGC
14408864 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.40
Consensus pattern (42 bp):
TGGGCTTGCATACATTCATTGATATTTCATGTGATATTAAAA
Found at i:14408923 original size:31 final size:31
Alignment explanation
Indices: 14408887--14408965 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
14408877 CGTTTACAAT
*
14408887 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14408918 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14408949 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
14408966 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14428927 original size:40 final size:40
Alignment explanation
Indices: 14428882--14429049 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
14428872 CGGAATATAA
14428882 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
14428922 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14428962 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
14429002 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14429042 CCGGATAT
1 CCGGATAT
14429050 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14436955 original size:40 final size:40
Alignment explanation
Indices: 14436910--14437076 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
14436900 CGGAATATAA
14436910 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
14436950 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14436990 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14437030 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14437069 CCGGATAT
1 CCGGATAT
14437077 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14440762 original size:25 final size:25
Alignment explanation
Indices: 14440733--14440780 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14440723 TTATAATATG
* *
14440733 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
14440758 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
14440781 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:14440843 original size:11 final size:10
Alignment explanation
Indices: 14440811--14440864 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
14440801 CATGAGATTT
14440811 TGATAT-ACA
1 TGATATGACA
*
14440820 TGATTTGACA
1 TGATATGACA
14440830 TGATATGCACA
1 TGATATG-ACA
*
14440841 TGATATG-TA
1 TGATATGACA
14440850 TGATATGCACA
1 TGATATG-ACA
14440861 TGAT
1 TGAT
14440865 GTATTCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:14440995 original size:25 final size:26
Alignment explanation
Indices: 14440910--14440982 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
14440900 GGAGGAAGTG
*
14440910 CAAAAGGGC-TATGCCCCAGTTTA-C
1 CAAAAGGGCTTTTGCCCCAGTTTATC
*
14440934 CGAAAAGGGCTTTTGCCCTAGTTTATC
1 C-AAAAGGGCTTTTGCCCCAGTTTATC
14440961 CAAAAGGGCTTTTGCCCCAGTT
1 CAAAAGGGCTTTTGCCCCAGTT
14440983 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
24 1 0.02
25 8 0.19
26 32 0.74
27 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (26 bp):
CAAAAGGGCTTTTGCCCCAGTTTATC
Found at i:14441240 original size:31 final size:31
Alignment explanation
Indices: 14441202--14441285 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14441192 TTGTTACAGT
14441202 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
14441233 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
14441264 GAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
14441286 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:14448954 original size:46 final size:46
Alignment explanation
Indices: 14448887--14448979 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
14448877 CCCCTATAGG
14448887 ATCGAAATAGAAAATAAATTCAATTAATTCCATACAGGTAGGGGAC
1 ATCGAAATAGAAAATAAATTCAATTAATTCCATACAGGTAGGGGAC
**
14448933 ATCGAAATAGAAAATAAATTCAATTAATTCCATATGGGTAGGGGAC
1 ATCGAAATAGAAAATAAATTCAATTAATTCCATACAGGTAGGGGAC
14448979 A
1 A
14448980 CGGGCGTGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (46 bp):
ATCGAAATAGAAAATAAATTCAATTAATTCCATACAGGTAGGGGAC
Found at i:14452244 original size:40 final size:40
Alignment explanation
Indices: 14452199--14452366 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
14452189 CGGAATATAA
14452199 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
14452239 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14452279 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
14452319 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14452359 CCGGATAT
1 CCGGATAT
14452367 CATTAAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14463951 original size:24 final size:25
Alignment explanation
Indices: 14463909--14463979 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 25
14463899 CAGGCCTAAT
* **
14463909 TTCACAGCTCGTAAGAGCATACCGA
1 TTCACAGCTCATGTGAGCATACCGA
* * *
14463934 TTTACATCTC-TGTGAGCATACTGA
1 TTCACAGCTCATGTGAGCATACCGA
*
14463958 TTCACAGCTCATTTGAGCATAC
1 TTCACAGCTCATGTGAGCATAC
14463980 ATGTACATGA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 19 0.51
25 18 0.49
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (25 bp):
TTCACAGCTCATGTGAGCATACCGA
Found at i:14467589 original size:49 final size:49
Alignment explanation
Indices: 14467512--14467756 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
14467502 TAGCCGAAGC
* * *
14467512 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
14467561 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
14467611 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACATACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
14467662 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
14467711 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
14467757 TCACAATAGC
Statistics
Matches: 167, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 83 0.50
50 47 0.28
51 37 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:14468438 original size:30 final size:30
Alignment explanation
Indices: 14468404--14468463 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14468394 CTTTAATACG
14468404 AACTTTAGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTAGCAAAATTACAC-TTTTGCCCCTA
* *
14468434 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
14468464 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:14469415 original size:75 final size:75
Alignment explanation
Indices: 14469289--14469435 Score: 213
Period size: 75 Copynumber: 2.0 Consensus size: 75
14469279 AAAAACCAGA
* * * **
14469289 ATTATTTCCTTATTAATAGAGAAGACAAATGGAAAGTTAGAAAAATTAATTATATTCATTCCAAA
1 ATTATTCCCATATTAATAGAGAAGACAAATGGAAAGCTAGAAAAAGGAATTATATTCATTCCAAA
*
14469354 AGAATATAGG
66 AAAATATAGG
** *
14469364 ATTATTCCCATATTAATAGAGAAGGTAAATGGAAAGCTAGAAAAAGGAATTATATTCTTTCCAAA
1 ATTATTCCCATATTAATAGAGAAGACAAATGGAAAGCTAGAAAAAGGAATTATATTCATTCCAAA
14469429 AAAATAT
66 AAAATAT
14469436 TAATTTTCAT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.31
Consensus pattern (75 bp):
ATTATTCCCATATTAATAGAGAAGACAAATGGAAAGCTAGAAAAAGGAATTATATTCATTCCAAA
AAAATATAGG
Found at i:14469599 original size:44 final size:44
Alignment explanation
Indices: 14469536--14469624 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
14469526 AGAAGTTTGT
* *
14469536 ACATATAATGTGTTTAATGTTTAACTATCAAATTAAATTAATTC
1 ACATATAATGTGTTCAATGTTTAACTATAAAATTAAATTAATTC
14469580 ACATATAATGTGTTCAATGTTTAACTATAAAATTAAATTAATTC
1 ACATATAATGTGTTCAATGTTTAACTATAAAATTAAATTAATTC
14469624 A
1 A
14469625 ATAATTAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.42
Consensus pattern (44 bp):
ACATATAATGTGTTCAATGTTTAACTATAAAATTAAATTAATTC
Found at i:14471218 original size:43 final size:43
Alignment explanation
Indices: 14471168--14471324 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 43
14471158 TATCCCGAAT
* * * *
14471168 ATGGTCTTATATGTTATCACATATCGATGCCACTGTCTCAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * * * *
14471211 AGGGTCTTATACGAAATCATATAACGATGCCAATATCCCAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* *
14471254 ATGGTCTTACATGTAATCATA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
14471297 ATGGTCTTACATGTAATCACATCTCGAT
1 ATGGTCTTACATGTAATCACATATCGAT
14471325 AATCCTAATG
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 91 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:14475610 original size:46 final size:46
Alignment explanation
Indices: 14475558--14475876 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
14475548 GGTGTGCTCT
*
14475558 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14475604 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14475650 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14475696 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14475742 CTGATATGAAA-GTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
14475787 GTGATATGAAATGAACAAGACCATGGTTGAAAGATAGCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14475833 ATGAGA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14475877 TCATGTCAAA
Statistics
Matches: 255, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 45 0.18
46 210 0.82
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14475899 original size:137 final size:136
Alignment explanation
Indices: 14475563--14475881 Score: 388
Period size: 137 Copynumber: 2.3 Consensus size: 136
14475553 GCTCTCTGAT
* * * * * * *
14475563 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCAT
1 ATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGATAAGAAA-G-ATAAGACCAT
***
14475628 GGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC
64 GGTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGC
* * *
14475693 AGCCTGAT
129 AACATGAG
* * * * * *
14475701 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAGTGTAAGACCATG
1 ATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGATAAGAAAG-ATAAGACCATG
* *
14475766 GTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAGACCATGGTTGAAAGATAGCATGGCA
65 GTTGAAAGATACCATGGCAACCTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCA
14475831 ACATGAG
130 ACATGAG
* *
14475838 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATG
14475882 TCAAAGATAA
Statistics
Matches: 165, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
136 1 0.01
137 113 0.68
138 51 0.31
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (136 bp):
ATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAACATGATAAGAAAGATAAGACCATGG
TTGAAAGATACCATGGCAACCTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAA
CATGAG
Found at i:14478971 original size:20 final size:20
Alignment explanation
Indices: 14478934--14478971 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14478924 TGATGGGGAG
*
14478934 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
14478954 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
14478972 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:14480898 original size:46 final size:46
Alignment explanation
Indices: 14480846--14481165 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
14480836 AGTGTGCTCT
*
14480846 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14480892 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14480938 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14480984 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14481030 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAAGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
14481076 GTGATATGAAATGAACAAGACCATGGTTGAAAGATAGCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14481122 ATGAGA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14481166 TCATGTCAAA
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 254 1.00
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14484255 original size:20 final size:20
Alignment explanation
Indices: 14484218--14484255 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14484208 TGATGGGGAG
*
14484218 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
14484238 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
14484256 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:14486191 original size:46 final size:46
Alignment explanation
Indices: 14486140--14486229 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
14486130 AGTGTGCTCT
*
14486140 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAGC
*
14486186 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCA
14486230 TCATGTCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAGC
Found at i:14487906 original size:184 final size:184
Alignment explanation
Indices: 14487597--14487944 Score: 696
Period size: 184 Copynumber: 1.9 Consensus size: 184
14487587 TAATTTCTAC
14487597 GTTTTTGAGATTGTTGCTCCGTAATTTAGCTAGCCTGTACCTCCGATTTTGAAATTTTAATAGAT
1 GTTTTTGAGATTGTTGCTCCGTAATTTAGCTAGCCTGTACCTCCGATTTTGAAATTTTAATAGAT
14487662 TTTTATAGTTTCCATTGTTGAATACATGTGTTAATTGATGTTTGATGATGAAATATGAAATTTTG
66 TTTTATAGTTTCCATTGTTGAATACATGTGTTAATTGATGTTTGATGATGAAATATGAAATTTTG
14487727 ATGATAGTTATACATGTTCTGTAAAGTGATTTTTGATGATAATAGATTTTTATA
131 ATGATAGTTATACATGTTCTGTAAAGTGATTTTTGATGATAATAGATTTTTATA
14487781 GTTTTTGAGATTGTTGCTCCGTAATTTAGCTAGCCTGTACCTCCGATTTTGAAATTTTAATAGAT
1 GTTTTTGAGATTGTTGCTCCGTAATTTAGCTAGCCTGTACCTCCGATTTTGAAATTTTAATAGAT
14487846 TTTTATAGTTTCCATTGTTGAATACATGTGTTAATTGATGTTTGATGATGAAATATGAAATTTTG
66 TTTTATAGTTTCCATTGTTGAATACATGTGTTAATTGATGTTTGATGATGAAATATGAAATTTTG
14487911 ATGATAGTTATACATGTTCTGTAAAGTGATTTTT
131 ATGATAGTTATACATGTTCTGTAAAGTGATTTTT
14487945 AGTAAAAATG
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
184 164 1.00
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.46
Consensus pattern (184 bp):
GTTTTTGAGATTGTTGCTCCGTAATTTAGCTAGCCTGTACCTCCGATTTTGAAATTTTAATAGAT
TTTTATAGTTTCCATTGTTGAATACATGTGTTAATTGATGTTTGATGATGAAATATGAAATTTTG
ATGATAGTTATACATGTTCTGTAAAGTGATTTTTGATGATAATAGATTTTTATA
Found at i:14490268 original size:53 final size:51
Alignment explanation
Indices: 14490143--14490352 Score: 179
Period size: 52 Copynumber: 4.2 Consensus size: 51
14490133 ACATAGTCAA
** * * *
14490143 ATATCACA-CAC-CGAAACCATAGCCCTA-CCATGGTCTTACATGG-ATCAC
1 ATATCACATCACTCGATGCCATAGCCC-AGCTATGGTCTTATACGGAATCAC
* * *
14490191 ATAT--CAT-AC-CGATGCCATATCCCAGATATGGTATTATACGGAATCAC
1 ATATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC
*
14490238 ATTATCACATCACATCGATGCCATAGCCCAGCTATGTTCTTATACGGAAAT-AC
1 A-TATCACATCAC-TCGATGCCATAGCCCAGCTATGGTCTTATACGG-AATCAC
* * * *
14490291 GTATCACATTGCACT-GATGGCAAAGCCCAGCTATGGTCTTATACGGAAGCAC
1 ATATCACA-T-CACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC
14490343 ATATCACATC
1 ATATCACATC
14490353 TTTTCCGTCA
Statistics
Matches: 131, Mismatches: 18, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
45 1 0.01
46 26 0.20
47 6 0.05
48 7 0.05
50 4 0.03
51 5 0.04
52 44 0.34
53 32 0.24
54 6 0.05
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (51 bp):
ATATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC
Found at i:14498462 original size:20 final size:20
Alignment explanation
Indices: 14498429--14498483 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
14498419 ATACGTGGGA
14498429 TATGATAT--ACATGAT-TCC
1 TATGATATGCACATGATAT-C
*
14498447 TATGATATGCACATGATATG
1 TATGATATGCACATGATATC
*
14498467 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
14498484 GTATTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.25
20 23 0.72
21 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATC
Found at i:14498578 original size:25 final size:25
Alignment explanation
Indices: 14498533--14498616 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
14498523 GAGGAAGTGC
14498533 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
* **
14498559 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
*
14498584 AAACGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
14498607 AAAAGAGGCT
1 AAAAG-GGCT
14498617 AGGCCTCCAG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
23 4 0.08
24 7 0.14
25 28 0.57
26 10 0.20
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:14506096 original size:20 final size:21
Alignment explanation
Indices: 14506061--14506117 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
14506051 TGATACGTGG
14506061 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
14506079 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
14506100 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
14506118 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:14506220 original size:25 final size:25
Alignment explanation
Indices: 14506167--14506288 Score: 163
Period size: 25 Copynumber: 4.8 Consensus size: 25
14506157 AAGGAAGTGC
* * *
14506167 AAAAGGGCTTATGCTCCAATTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACTG
*
14506193 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
14506218 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTACTG
14506244 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
14506269 AAATGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
14506289 ATTAAAAGAG
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
25 53 0.62
26 33 0.38
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:14506243 original size:51 final size:51
Alignment explanation
Indices: 14506167--14506301 Score: 195
Period size: 51 Copynumber: 2.7 Consensus size: 51
14506157 AAGGAAGTGC
* *
14506167 AAAAGGGCTTATGCTCCAATTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
14506218 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
* *
14506269 AAATGGGCTT-TGCCCTAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
14506302 AGGCCTCTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
48 5 0.06
49 9 0.12
50 7 0.09
51 57 0.73
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:14508593 original size:71 final size:71
Alignment explanation
Indices: 14508509--14508672 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
14508499 CGATTTGTCT
14508509 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
14508574 CTTTCA
66 CTTTCA
* *
14508580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
14508645 CTTTCA
66 CTTTCA
14508651 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
14508673 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:14508710 original size:71 final size:70
Alignment explanation
Indices: 14508509--14508706 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
14508499 CGATTTGTCT
* * * * *
14508509 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14508574 CTTTCA
65 CTTTCA
* * * *
14508580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
14508645 CTTTCA
65 CTTTCA
* *
14508651 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
14508707 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:14511203 original size:46 final size:46
Alignment explanation
Indices: 14511153--14511325 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
14511143 TGGTTGAGCA
14511153 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14511199 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
14511244 CATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14511292 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14511326 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14511309 original size:93 final size:93
Alignment explanation
Indices: 14511150--14511320 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14511140 GGATGGTTGA
* * *
14511150 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
14511215 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
14511243 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14511308 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
14511321 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:14516232 original size:55 final size:55
Alignment explanation
Indices: 14516147--14516251 Score: 165
Period size: 55 Copynumber: 1.9 Consensus size: 55
14516137 GTCCATACCT
* * *
14516147 GTGTTAATCTGACAGGTTCGACCACAGTTTCTTGGCACGGGTGTGTCACACGCCA
1 GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCACACGCCA
* *
14516202 GTGTTAATTTGACAGGTTCGACCACGGTTTCTAGGCACAGGCGTGTCACA
1 GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCACA
14516252 TGCCCATATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (55 bp):
GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCACACGCCA
Found at i:14521794 original size:41 final size:41
Alignment explanation
Indices: 14521749--14521866 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
14521739 TGAAAGATAA
14521749 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
14521790 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14521820 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14521861 ATGTAG
1 ATGTAG
14521867 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:14521805 original size:71 final size:71
Alignment explanation
Indices: 14521717--14521880 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
14521707 GAGATGTATC
14521717 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14521782 AGGACA
66 AGGACA
14521788 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14521853 AGGACA
66 AGGACA
14521859 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
14521881 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:14529371 original size:41 final size:41
Alignment explanation
Indices: 14529326--14529443 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
14529316 TGAAAGATAA
14529326 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
14529367 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14529397 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14529438 ATGTAG
1 ATGTAG
14529444 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:14529382 original size:71 final size:71
Alignment explanation
Indices: 14529294--14529457 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
14529284 GAGATGTATC
14529294 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14529359 AGGACA
66 AGGACA
14529365 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14529430 AGGACA
66 AGGACA
14529436 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
14529458 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:14531298 original size:19 final size:20
Alignment explanation
Indices: 14531238--14531284 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
14531228 AGTATATGAG
14531238 TTGTGAAGTGAATATTTTGA
1 TTGTGAAGTGAATATTTTGA
14531258 TTGTGAAGTGAATATTTTGA
1 TTGTGAAGTGAATATTTTGA
14531278 TTGTGAA
1 TTGTGAA
14531285 TTAATGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.45
Consensus pattern (20 bp):
TTGTGAAGTGAATATTTTGA
Found at i:14537664 original size:44 final size:45
Alignment explanation
Indices: 14537584--14537806 Score: 138
Period size: 46 Copynumber: 4.9 Consensus size: 45
14537574 GCTCTAGAAT
* *
14537584 ATCT-GTA-CCGATGCCATGTCCTGGACAAGTTCTTACACTGAC-AC
1 ATCTCGTAGCCGATG-CATGTCCTAGACATG-TCTTACACTGACTAC
* *
14537628 ATCTCGTAGCCGATGCATGTCTTAGACATGTCTTACACTGGCTTAC
1 ATCTCGTAGCCGATGCATGTCCTAGACATGTCTTACACTGAC-TAC
* * * *
14537674 ATATCG-AGGTCGATGCATGTCCCAGACATGTCTTACACTAGCACT-T
1 ATCTCGTA-GCCGATGCATGTCCTAGACATGTCTTACACT-G-ACTAC
* * ** * *
14537720 GTCTC-AATGTTGATGCCATGTTCC-AGACATGGTCTTACACTGGCTCTC
1 ATCTCGTA-GCCGATG-CATG-TCCTAGACAT-GTCTTACACTGACT-AC
* *
14537768 ATAAT-GTAGCCGATGCATGTCCTAGAGATGTCTTACACT
1 AT-CTCGTAGCCGATGCATGTCCTAGACATGTCTTACACT
14537807 AGCCCACAAT
Statistics
Matches: 141, Mismatches: 22, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
44 15 0.11
45 16 0.11
46 66 0.47
47 22 0.16
48 20 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (45 bp):
ATCTCGTAGCCGATGCATGTCCTAGACATGTCTTACACTGACTAC
Found at i:14538465 original size:13 final size:13
Alignment explanation
Indices: 14538447--14538474 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14538437 ACGGAAAGAC
14538447 CCTATACCTTCAA
1 CCTATACCTTCAA
14538460 CCTATACCTTCAA
1 CCTATACCTTCAA
14538473 CC
1 CC
14538475 ATTTGCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.43, G:0.00, T:0.29
Consensus pattern (13 bp):
CCTATACCTTCAA
Found at i:14542219 original size:39 final size:40
Alignment explanation
Indices: 14542161--14542261 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
14542151 AAATTGAATG
* *
14542161 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
14542200 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
14542240 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
14542262 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:14542254 original size:40 final size:40
Alignment explanation
Indices: 14542161--14542343 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
14542151 AAATTGAATG
* * * * *
14542161 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
14542200 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
14542240 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
14542280 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
14542320 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
14542344 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:14550357 original size:40 final size:40
Alignment explanation
Indices: 14550255--14550438 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
14550245 AAATTGAATG
* * * * *
14550255 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
14550295 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
14550335 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
14550375 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
14550415 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
14550439 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:14555959 original size:23 final size:23
Alignment explanation
Indices: 14555929--14555976 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
14555919 ATATGAGATG
14555929 TTAATGGCCTAATTTCATACTTT
1 TTAATGGCCTAATTTCATACTTT
14555952 TTAATGGCCTAATTTCATACTTT
1 TTAATGGCCTAATTTCATACTTT
14555975 TT
1 TT
14555977 TTTAATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (23 bp):
TTAATGGCCTAATTTCATACTTT
Found at i:14559187 original size:28 final size:28
Alignment explanation
Indices: 14559126--14559223 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
14559116 TCACAAATTG
** * *
14559126 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
14559155 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
14559183 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
14559211 GCACTAAGTGTGC
1 GCACTAAGTGTGC
14559224 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:14564321 original size:30 final size:30
Alignment explanation
Indices: 14564266--14564396 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
14564256 ATAGTGAATC
*
14564266 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
14564295 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
14564325 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
14564353 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
14564383 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14564397 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:14564376 original size:58 final size:58
Alignment explanation
Indices: 14564265--14564396 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
14564255 TATAGTGAAT
* * * * *
14564265 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
14564324 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
14564382 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
14564397 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:14573247 original size:40 final size:39
Alignment explanation
Indices: 14573079--14573249 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
14573069 AGAAATTGAA
* *
14573079 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
14573119 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
14573159 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
14573199 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
14573239 TGATATCCGGG
1 TGATATCCGGG
14573250 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:14575402 original size:30 final size:30
Alignment explanation
Indices: 14575345--14575475 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
14575335 ATAGTGAATC
*
14575345 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
* *
14575374 CGCACACTTAGTGCTATATAACTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
14575404 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
14575432 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
14575462 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14575476 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 47 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:14575466 original size:58 final size:58
Alignment explanation
Indices: 14575344--14575475 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
14575334 TATAGTGAAT
* * * * *
14575344 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAACTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAACTTTAAAC
* * *
14575403 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAACTTTAAAC
14575461 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
14575476 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.65
59 20 0.32
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAACTTTAAAC
Found at i:14581026 original size:28 final size:28
Alignment explanation
Indices: 14580965--14581062 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
14580955 TCACAAATTG
** * *
14580965 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
14580994 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
14581022 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
14581050 GCACTAAGTGTGC
1 GCACTAAGTGTGC
14581063 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:14587773 original size:30 final size:30
Alignment explanation
Indices: 14587739--14587799 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14587729 TCCTTAACTC
14587739 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
14587769 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
14587799 A
1 A
14587800 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:14609460 original size:2 final size:2
Alignment explanation
Indices: 14609453--14609477 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14609443 ACATCTCATT
14609453 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14609478 GTCACATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14613324 original size:36 final size:36
Alignment explanation
Indices: 14613277--14613349 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
14613267 GAGTAAAGAG
*
14613277 AATGATGCAAATGAACAAATGAAAAGGACAAATTCT
1 AATGATGCAAATGAACAAATGAAAAAGACAAATTCT
*
14613313 AATGATGCAAATGAACAAATGAAAAAGACTAATTCT
1 AATGATGCAAATGAACAAATGAAAAAGACAAATTCT
14613349 A
1 A
14613350 CCTCTGATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.21
Consensus pattern (36 bp):
AATGATGCAAATGAACAAATGAAAAAGACAAATTCT
Found at i:14616364 original size:23 final size:23
Alignment explanation
Indices: 14616320--14616364 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14616310 ATGGAAGTGG
* *
14616320 GACAGAGTTACTATGGATTTCGT
1 GACAGAGTTACCATGGACTTCGT
* *
14616343 GACAGGGTTACCATTGACTTCG
1 GACAGAGTTACCATGGACTTCG
14616365 AAGAAGAAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (23 bp):
GACAGAGTTACCATGGACTTCGT
Found at i:14619398 original size:39 final size:39
Alignment explanation
Indices: 14619344--14619420 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
14619334 GACCAGCTTT
14619344 GGTATAAAGACATTTCTAAATTGTTCAATGGCATGTATA
1 GGTATAAAGACATTTCTAAATTGTTCAATGGCATGTATA
14619383 GGTATAAAGACATTTCTAAATTGTTCAATGGCATGTAT
1 GGTATAAAGACATTTCTAAATTGTTCAATGGCATGTAT
14619421 TTCTTTCGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.36
Consensus pattern (39 bp):
GGTATAAAGACATTTCTAAATTGTTCAATGGCATGTATA
Found at i:14621594 original size:29 final size:29
Alignment explanation
Indices: 14621561--14621634 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
14621551 CCTTCGAGCT
14621561 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
14621590 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14621619 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14621635 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:14621595 original size:58 final size:58
Alignment explanation
Indices: 14621502--14621634 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
14621492 ATACTCGATT
* * * * *
14621502 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
14621560 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
14621618 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
14621635 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:14629324 original size:40 final size:40
Alignment explanation
Indices: 14629265--14629433 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
14629255 CGGGACTTTA
* * *
14629265 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
14629305 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
14629345 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
14629385 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
14629425 CCCGGATAT
1 CCCGGATAT
14629434 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:14637446 original size:39 final size:40
Alignment explanation
Indices: 14637273--14637450 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
14637263 ACCAAGGCCA
* * * * * * *
14637273 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
14637313 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
14637353 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
14637393 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
14637432 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
14637451 CATTCAATTT
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
39 31 0.26
40 85 0.72
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:14643095 original size:40 final size:40
Alignment explanation
Indices: 14643049--14643233 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
14643039 CTTGCACAAG
* * *
14643049 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
14643089 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
14643129 GCTTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
14643169 GGCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
14643210 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
14643234 CATTCGAATA
Statistics
Matches: 119, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 90 0.76
41 28 0.24
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:14647189 original size:13 final size:13
Alignment explanation
Indices: 14647171--14647208 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
14647161 TCGATAGGGG
14647171 CACGCCCGTGTGA
1 CACGCCCGTGTGA
14647184 CACGCCCGTGTGA
1 CACGCCCGTGTGA
14647197 CACGCCCGTGTG
1 CACGCCCGTGTG
14647209 CGATTACTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.13, C:0.39, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGA
Found at i:14650419 original size:12 final size:12
Alignment explanation
Indices: 14650398--14650447 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
14650388 AAATAGATAT
14650398 TTATTA-AATTA
1 TTATTATAATTA
*
14650409 TTGTTATAATTA
1 TTATTATAATTA
*
14650421 TTATTATTATTA
1 TTATTATAATTA
*
14650433 TTATTATTATTA
1 TTATTATAATTA
14650445 TTA
1 TTA
14650448 ATATTATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
11 5 0.14
12 30 0.86
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (12 bp):
TTATTATAATTA
Found at i:14650425 original size:3 final size:3
Alignment explanation
Indices: 14650405--14650454 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
14650395 TATTTATTAA
* * *
14650405 ATT ATT GTT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14650453 AT
1 AT
14650455 CAAATAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:14650452 original size:12 final size:12
Alignment explanation
Indices: 14650398--14650454 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
14650388 AAATAGATAT
14650398 TTATTAA-ATTA
1 TTATTAATATTA
*
14650409 TTGTT-ATA--A
1 TTATTAATATTA
*
14650418 TTATTATTATTA
1 TTATTAATATTA
*
14650430 TTATTATTATTA
1 TTATTAATATTA
14650442 TTATTAATATTA
1 TTATTAATATTA
14650454 T
1 T
14650455 CAAATAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 5 0.13
10 3 0.08
11 5 0.13
12 25 0.66
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (12 bp):
TTATTAATATTA
Found at i:14652589 original size:46 final size:46
Alignment explanation
Indices: 14652533--14652707 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
14652523 TGGTTGAGCA
14652533 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14652579 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
14652624 CATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14652672 CCCGAGCTCGTTGAGTTGAGTCCGA-TTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14652708 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 14 0.13
46 51 0.48
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14658072 original size:46 final size:46
Alignment explanation
Indices: 14658022--14658197 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
14658012 TGGTTGAGCA
14658022 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14658068 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
14658113 CATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14658161 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14658198 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14658178 original size:93 final size:93
Alignment explanation
Indices: 14658019--14658189 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14658009 GGATGGTTGA
* * *
14658019 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14658084 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
14658112 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
14658177 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
14658190 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14705332 original size:49 final size:49
Alignment explanation
Indices: 14705205--14705324 Score: 224
Period size: 49 Copynumber: 2.5 Consensus size: 49
14705195 TACATAATAG
14705205 TATA-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
14705253 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
14705302 TATGTGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
14705325 TAATGTGAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
48 4 0.06
49 66 0.94
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:14705374 original size:48 final size:48
Alignment explanation
Indices: 14705300--14705477 Score: 266
Period size: 48 Copynumber: 3.7 Consensus size: 48
14705290 TGAAAGTGTA
* *
14705300 TATATGTGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* *
14705350 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * *
14705398 TATATGTAGTAAAGCCGAATGGCTAATGTGAAATGTATGTGTGATACG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
14705446 TATATGTGGTAAAGCCGAATGGCTAACGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
14705478 TGTTGTAACA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 108 0.92
49 1 0.01
50 8 0.07
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:14705571 original size:37 final size:37
Alignment explanation
Indices: 14705517--14705644 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
14705507 AACTTGGAAA
*
14705517 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
14705555 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
14705592 TATGTCTGGGTGAGACCCGATGACTATGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
14705629 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
14705645 TTCATAATAA
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 80 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:14707634 original size:40 final size:40
Alignment explanation
Indices: 14707572--14708036 Score: 680
Period size: 40 Copynumber: 11.6 Consensus size: 40
14707562 GAGAGTGATA
* * * * *
14707572 TATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
14707612 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAA-G
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT-AATG
* *
14707652 TATCCGAACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
*
14707692 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
*
14707732 TATCTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* *
14707772 TATCTGGACTAAGTTCCGAAAAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* * *
14707812 CAACCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
14707852 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* * *
14707892 CAACCAGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* *
14707932 TATCCGGACTAAGTTCTGAATAGCATTCGTGCTAGTAATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* * * *
14707972 CAACCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
* * *
14708012 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
14708037 ATCATGCTGG
Statistics
Matches: 386, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 384 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
Found at i:14711992 original size:49 final size:49
Alignment explanation
Indices: 14711864--14711984 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
14711854 TACATAATAG
14711864 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
14711913 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
14711962 TATGTGTGATAAGGCCTAATGGC
1 TATATGTGATAAGGCCTAATGGC
14711985 TAATGTGAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:14712034 original size:48 final size:48
Alignment explanation
Indices: 14711960--14712137 Score: 239
Period size: 48 Copynumber: 3.7 Consensus size: 48
14711950 TGAAAGTGTA
* *
14711960 TATATGTGTGATAAGGCCTAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * *
14712010 TATATGTGGTAAAGCCGAATGGCTAATGTGACATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * *
14712058 TATATGTAGTAAAGCCGAATGGCTAATGTGAAATGTATGTGTGATACG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * *
14712106 TATATATGGTAAAGTCGAATGGCTAACGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
14712138 TGTTGTAACA
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
48 104 0.92
49 1 0.01
50 8 0.07
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:14712231 original size:37 final size:37
Alignment explanation
Indices: 14712185--14712304 Score: 204
Period size: 37 Copynumber: 3.2 Consensus size: 37
14712175 AATATGTTCT
*
14712185 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
14712222 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
14712259 GGGTGAGACCCGATGACTATGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
14712296 GGGTAAGAC
1 GGGTAAGAC
14712305 TTCATAATAA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:14718110 original size:40 final size:39
Alignment explanation
Indices: 14718019--14718169 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
14718009 ATAACCATGT
* *
14718019 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
14718059 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
14718099 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
14718139 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
14718170 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:14718153 original size:80 final size:80
Alignment explanation
Indices: 14718019--14718168 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
14718009 ATAACCATGT
*
14718019 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
14718083 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
14718099 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
14718162 CCCGGAT
64 CCCGGAT
14718169 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:14721647 original size:72 final size:72
Alignment explanation
Indices: 14721530--14721669 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 72
14721520 ATGGACTGGT
* * * *
14721530 TGGTTAAACACCAGGTGAGTCTGGATTGTGCGTCGAAAAGGGTTGTCTTGAGGATCGAGGACGAC
1 TGGTTAAACACCAGGTGAGTCTAGATTGTGCGTCAAAAAGGGTTGTCTTAAGGACCGAGGACGAC
14721595 AATTGGC
66 AATTGGC
** *
14721602 TGGTTAAACACTGGGTGAGTCTAGATTGTGCGTCAAAAAGGGTTGTCTTAAGGACCGAGGAGGAC
1 TGGTTAAACACCAGGTGAGTCTAGATTGTGCGTCAAAAAGGGTTGTCTTAAGGACCGAGGACGAC
14721667 AAT
66 AAT
14721670 GAGGTAATGG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25
Consensus pattern (72 bp):
TGGTTAAACACCAGGTGAGTCTAGATTGTGCGTCAAAAAGGGTTGTCTTAAGGACCGAGGACGAC
AATTGGC
Found at i:14725164 original size:14 final size:13
Alignment explanation
Indices: 14725137--14725162 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14725127 GGGGTTATGA
14725137 GATTTTTTCTTTT
1 GATTTTTTCTTTT
14725150 GATTTTTTCTTTT
1 GATTTTTTCTTTT
14725163 TGCAAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (13 bp):
GATTTTTTCTTTT
Found at i:14731874 original size:14 final size:14
Alignment explanation
Indices: 14731857--14731886 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14731847 ACTATGATAG
14731857 TATGTATATGGAAT
1 TATGTATATGGAAT
14731871 TATGTATATGGAAT
1 TATGTATATGGAAT
14731885 TA
1 TA
14731887 AGTAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (14 bp):
TATGTATATGGAAT
Found at i:14732383 original size:18 final size:18
Alignment explanation
Indices: 14732360--14732396 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14732350 TACATATATT
14732360 AGCCGATTAAACCAAGAA
1 AGCCGATTAAACCAAGAA
14732378 AGCCGATTAAACCAAGAA
1 AGCCGATTAAACCAAGAA
14732396 A
1 A
14732397 CGAAGTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.11
Consensus pattern (18 bp):
AGCCGATTAAACCAAGAA
Found at i:14740539 original size:6 final size:6
Alignment explanation
Indices: 14740522--14740568 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
14740512 TTTGAACTAA
** *
14740522 GTTTTAG GTTTTG GTTTT- GTTTTG GACTTG GTTTTG GTTTTT GTTTT
1 GTTTT-G GTTTTG GTTTTG GTTTTG GTTTTG GTTTTG GTTTTG GTTTT
14740569 TCATCGGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.04, C:0.02, G:0.28, T:0.66
Consensus pattern (6 bp):
GTTTTG
Found at i:14740545 original size:30 final size:29
Alignment explanation
Indices: 14740511--14740568 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
14740501 GACTTTTGAT
14740511 TTTTGAACTAAGTTTTAGGTTTTGGTTTTG
1 TTTTGAACTAAGTTTT-GGTTTTGGTTTTG
* ** *
14740541 TTTTGGACTTGGTTTTGGTTTTTGTTTT
1 TTTTGAACTAAGTTTTGGTTTTGGTTTT
14740569 TCATCGGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.10, C:0.03, G:0.24, T:0.62
Consensus pattern (29 bp):
TTTTGAACTAAGTTTTGGTTTTGGTTTTG
Done.