Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 500 of 770
Found at i:154691401 original size:40 final size:40
Alignment explanation
Indices: 154691356--154691523 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
154691346 CGGAATATAA
154691356 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
154691396 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
154691436 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
154691476 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
154691516 CCGGATAT
1 CCGGATAT
154691524 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154700404 original size:41 final size:41
Alignment explanation
Indices: 154700359--154700476 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
154700349 TGAAAGATAA
154700359 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
154700400 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
154700430 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
154700471 ATGTAG
1 ATGTAG
154700477 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:154700415 original size:71 final size:71
Alignment explanation
Indices: 154700327--154700490 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
154700317 GAGATGTATC
154700327 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
154700392 AGGACA
66 AGGACA
154700398 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
154700463 AGGACA
66 AGGACA
154700469 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
154700491 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:154708011 original size:70 final size:71
Alignment explanation
Indices: 154707861--154708023 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
154707851 GAGATGTATC
154707861 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
154707926 AGGACA
66 AGGACA
154707932 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
154707996 AGGACA
66 AGGACA
154708002 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
154708024 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:154715317 original size:40 final size:39
Alignment explanation
Indices: 154715259--154715352 Score: 152
Period size: 40 Copynumber: 2.3 Consensus size: 39
154715249 TGATGATGAT
154715259 TGGCACTAAGTGTACGGTTTAATATAGCTTCGGCTATAAA
1 TGGCACT-AGTGTACGGTTTAATATAGCTTCGGCTATAAA
*
154715299 TGGCACTAGTTGTGCGGTTTAATATAGCTTCGGCTATAAA
1 TGGCACTAG-TGTACGGTTTAATATAGCTTCGGCTATAAA
154715339 TGGCACTAAGTGTA
1 TGGCACT-AGTGTA
154715353 AGATACCGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.04
40 46 0.92
41 2 0.04
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (39 bp):
TGGCACTAGTGTACGGTTTAATATAGCTTCGGCTATAAA
Found at i:154716393 original size:24 final size:24
Alignment explanation
Indices: 154716327--154716386 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
154716317 CTGTCAGGAG
154716327 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
154716351 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
154716375 AGGATTTAGGAG
1 AGGATTTAGGAG
154716387 CAGATAAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:154717635 original size:24 final size:24
Alignment explanation
Indices: 154717603--154717651 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
154717593 AGTATGTAAA
154717603 TGGATAGGATATGCATGAAAACCC
1 TGGATAGGATATGCATGAAAACCC
154717627 TGGATAGGATATGCATGAAAACCC
1 TGGATAGGATATGCATGAAAACCC
154717651 T
1 T
154717652 AAAAGTAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (24 bp):
TGGATAGGATATGCATGAAAACCC
Found at i:154717880 original size:27 final size:26
Alignment explanation
Indices: 154717840--154717950 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
154717830 AGGAAGCGTC
*
154717840 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
154717867 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
154717894 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
154717922 C-GGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
154717947 CTGG
1 CTGG
154717951 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.03
26 12 0.17
27 53 0.75
28 4 0.06
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:154717938 original size:54 final size:53
Alignment explanation
Indices: 154717840--154717950 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
154717830 AGGAAGCGTC
* *
154717840 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * *
154717894 CTGGTGGTTCTGCCACGATTATCTGTATC-GGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATTATCTGTT
154717947 CTGG
1 CTGG
154717951 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 12 0.24
54 35 0.70
55 3 0.06
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:154723898 original size:30 final size:30
Alignment explanation
Indices: 154723862--154723918 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
154723852 AAATCATATT
*
154723862 TTTTACAAATTTTCA-TTTTGACCCCAAAAC
1 TTTTACAAATTTACACTTTTG-CCCCAAAAC
*
154723892 TTTTACATATTTACACTTTTGCCCCAA
1 TTTTACAAATTTACACTTTTGCCCCAA
154723919 TGCTCGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.42
Consensus pattern (30 bp):
TTTTACAAATTTACACTTTTGCCCCAAAAC
Found at i:154726873 original size:46 final size:45
Alignment explanation
Indices: 154726821--154726933 Score: 142
Period size: 44 Copynumber: 2.5 Consensus size: 45
154726811 GTCGATGCCG
* * *
154726821 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
154726867 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
*
154726911 TGTCCCAGACATGTCTGACACTG
1 TGTCCCAGACATGTCTTACACTG
154726934 GCTATCTGTG
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
43 3 0.05
44 29 0.48
45 1 0.02
46 27 0.45
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:154727779 original size:143 final size:141
Alignment explanation
Indices: 154727571--154727864 Score: 561
Period size: 143 Copynumber: 2.1 Consensus size: 141
154727561 TGAGTTAAAT
*
154727571 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
154727636 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
154727701 GTGTGCATGAGTA
129 GTGTGCATGAGTA
154727714 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
154727779 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
154727844 GTGCATGAGTA
131 GTGCATGAGTA
154727855 TTCGGCCATG
1 TTCGGCCATG
154727865 TTATAGAATT
Statistics
Matches: 150, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 28 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:154728542 original size:29 final size:29
Alignment explanation
Indices: 154728510--154728640 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
154728500 TGACGAGATT
* *
154728510 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* *
154728539 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
*
154728568 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* * **
154728597 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
**
154728626 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
154728641 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAC
Found at i:154737313 original size:24 final size:24
Alignment explanation
Indices: 154737281--154737450 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
154737271 GCAAAGACCA
*
154737281 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
154737305 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
154737329 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
154737353 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
154737377 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
154737401 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
*
154737425 TAT-GCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
154737448 TAT
1 TAT
154737451 AGTCACATTC
Statistics
Matches: 140, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
23 23 0.16
24 117 0.84
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:154745389 original size:24 final size:24
Alignment explanation
Indices: 154745213--154745387 Score: 278
Period size: 24 Copynumber: 7.2 Consensus size: 24
154745203 TGCAAAGACC
*
154745213 ACTATGGCACTATGTGTGTGCGATTC
1 ACTATGGCACTA--TGTGTGCGATTT
154745239 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
154745263 ACTATGGCACTATGTGTGCGATTC
1 ACTATGGCACTATGTGTGCGATTT
*
154745287 ACTATGGCACTATGTGTGCGATTC
1 ACTATGGCACTATGTGTGCGATTT
154745311 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
154745335 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
* *
154745359 GCTATAGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTT
*
154745383 GCTAT
1 ACTAT
154745388 AGTCACATTC
Statistics
Matches: 144, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
24 132 0.92
26 12 0.08
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
ACTATGGCACTATGTGTGCGATTT
Found at i:154751882 original size:40 final size:39
Alignment explanation
Indices: 154751718--154751900 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
154751708 AAATTGAATG
* * *
154751718 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
154751758 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
154751798 ACATCCGGGCTAAGACCCGAA-GCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
154751837 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
154751876 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
154751901 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 34 0.31
40 71 0.64
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:154763254 original size:26 final size:26
Alignment explanation
Indices: 154763220--154763277 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
154763210 TTCCATACTT
* *
154763220 AGAGAAAGATTTTAAGTTAAGAGAAG
1 AGAGAAAGATTTTAAGTCAAGAAAAG
154763246 AGAGAAAGATTTTAAGTCAAGAAAAG
1 AGAGAAAGATTTTAAGTCAAGAAAAG
154763272 A-AGAAA
1 AGAGAAA
154763278 TAAAACCCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.55, C:0.02, G:0.24, T:0.19
Consensus pattern (26 bp):
AGAGAAAGATTTTAAGTCAAGAAAAG
Found at i:154797763 original size:40 final size:40
Alignment explanation
Indices: 154797718--154797885 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
154797708 CGGAATATAA
154797718 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154797758 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154797798 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
154797838 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
154797878 CCGGATAT
1 CCGGATAT
154797886 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154797868 original size:80 final size:80
Alignment explanation
Indices: 154797734--154797883 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
154797724 ATAATCACGT
*
154797734 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
154797798 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
154797814 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
154797877 CCCGGAT
64 CCCGGAT
154797884 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:154805770 original size:40 final size:40
Alignment explanation
Indices: 154805725--154805892 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
154805715 CGGAATATAA
154805725 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154805765 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
154805805 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
154805845 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
154805885 CCGGATAT
1 CCGGATAT
154805893 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:154805875 original size:80 final size:80
Alignment explanation
Indices: 154805741--154805890 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
154805731 ATAATCACGT
*
154805741 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
154805805 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
154805821 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
154805884 CCCGGAT
64 CCCGGAT
154805891 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:154816880 original size:29 final size:29
Alignment explanation
Indices: 154816848--154816954 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
154816838 ATACCCTCCG
** *
154816848 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* *
154816877 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACATAGTGCCATATTTTTCC
* * *
154816906 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACATAGTGCCATATTTTTCC
* *
154816935 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACATAGTGCCA
154816955 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACATAGTGCCATATTTTTCC
Found at i:154823949 original size:20 final size:20
Alignment explanation
Indices: 154823924--154823964 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
154823914 CAGTACTGCA
154823924 GTAGACTATGCCAATTTCAT
1 GTAGACTATGCCAATTTCAT
154823944 GTAGACTATGCCAATTTCAT
1 GTAGACTATGCCAATTTCAT
154823964 G
1 G
154823965 AATCTTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (20 bp):
GTAGACTATGCCAATTTCAT
Found at i:154830205 original size:45 final size:43
Alignment explanation
Indices: 154830132--154830216 Score: 100
Period size: 43 Copynumber: 1.9 Consensus size: 43
154830122 ATGAAATATG
* * * *
154830132 TATAATAATAATAATAATGTAACAAATATTTTACATATAAAAA
1 TATAATAATAATAATAATATAAAAAATATATAACATATAAAAA
154830175 TATAATAA-AATAAGTAATATAATAAGAATATATAACATATAA
1 TATAATAATAATAA-TAATATAA-AA-AATATATAACATATAA
154830217 TAAACTTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 5 0.14
43 15 0.43
44 1 0.03
45 14 0.40
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (43 bp):
TATAATAATAATAATAATATAAAAAATATATAACATATAAAAA
Found at i:154832294 original size:134 final size:134
Alignment explanation
Indices: 154832132--154832384 Score: 389
Period size: 134 Copynumber: 1.9 Consensus size: 134
154832122 TGAATATGGA
* * *
154832132 GATGCTGAATCTACTATCTTCAACTTGTTCCCTATAAACATACGGATGCCATACTGAAATCTTCG
1 GATGCTAAATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCG
*
154832197 ATCTGCTTCGCTGTAAGCACAAGAATGTCAGATCTACTATGTCTTCGATCTGTTTCCTGTAAACA
66 ATCTGCTTCGCTGTAAGCACAAGAATGTCAAATCTACTATGTCTTCGATCTGTTTCCTGTAAACA
154832262 CAAC
131 CAAC
* * * ** *
154832266 GATGCTAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGTCATGTTAAAATCTTTG
1 GATGCTAAATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCG
* * *
154832331 ATCTGCTTCGCTGTAAGTACAGGAATGTCAAATCTGCTATGTCTTCGATCTGTT
66 ATCTGCTTCGCTGTAAGCACAAGAATGTCAAATCTACTATGTCTTCGATCTGTT
154832385 CTCCGTCGAA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
134 106 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (134 bp):
GATGCTAAATCTACTATCTTCAACTTGTTCCCTATAAACACACGGATGCCATACTAAAATCTTCG
ATCTGCTTCGCTGTAAGCACAAGAATGTCAAATCTACTATGTCTTCGATCTGTTTCCTGTAAACA
CAAC
Found at i:154832514 original size:87 final size:87
Alignment explanation
Indices: 154832417--154832591 Score: 266
Period size: 87 Copynumber: 2.0 Consensus size: 87
154832407 AAATCTGTTA
154832417 TCTTCGATTTG-TCCTCTAACAATACA-GA-GATGCCAAATCATCTTGGATCTGCTTCAGCATAA
1 TCTTCGATTTGCTCCT-T-ACAA-ACACGAGGATGCCAAATCATCTTGGATCTGCTTCAGCATAA
154832479 ACATCTGAAGGTCAGATCTGCTATG
63 ACATCTGAAGGTCAGATCTGCTATG
** *
154832504 TCTTCGATTTGCTCCTTGTAAACACGAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGCTCCTTACAAACACGAGGATGCCAAATCATCTTGGATCTGCTTCAGCATAAACA
*
154832569 TCTGAAGGTTAGATCTGCTATG
66 TCTGAAGGTCAGATCTGCTATG
154832591 T
1 T
154832592 GTCTACTCTC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
85 3 0.04
86 4 0.05
87 70 0.86
88 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (87 bp):
TCTTCGATTTGCTCCTTACAAACACGAGGATGCCAAATCATCTTGGATCTGCTTCAGCATAAACA
TCTGAAGGTCAGATCTGCTATG
Found at i:154832634 original size:87 final size:87
Alignment explanation
Indices: 154832543--154832943 Score: 287
Period size: 87 Copynumber: 4.6 Consensus size: 87
154832533 ATGCCAAATC
* *
154832543 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCTGTCGA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGA
*
154832608 ATATGGAGACGCCAAATCTGTT
66 ATATGGAGACGCTAAATCTGTT
* * * * *
154832630 ATCTTGGATCTGCTTTAGTA-AAATCATCTAAAGGTTAGATCTGTTATGTATCTGCCCTCCGTCG
1 ATCTTGGATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCG
* *
154832694 AA-ATGGAGATGCTAGATCTGTT
65 AATATGGAGACGCTAAATCTGTT
* ** * * * * * * *
154832716 ATCTTGGATCTACTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCTA--GT-TGT
1 ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTGCTATGT-GTCTACCCTCCG-
* * * * * ***
154832778 TC--CT-TGTAAACACAAGAATGCAAAAAT
62 TCGAATATGGAGACGCTA-AAT-C--TGTT
* * * * *
154832805 ATCTTAGATATGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCAA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGA
*
154832870 ATATGGAGACGCTAGATCTGTT
66 ATATGGAGACGCTAAATCTGTT
* * * * *
154832892 ATCTTGGATCTGCTTTGATGTGAAAAACATCTGAAAGTCAAATCTGCTATGT
1 ATCTTGGATCTGC-TTCA-GT-ATAAACATCTGAAGGTTAGATCTGCTATGT
154832944 CTTCGATTTG
Statistics
Matches: 232, Mismatches: 62, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
85 6 0.03
86 44 0.19
87 94 0.41
88 27 0.12
89 25 0.11
90 29 0.12
91 7 0.03
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (87 bp):
ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGA
ATATGGAGACGCTAAATCTGTT
Found at i:154832957 original size:177 final size:175
Alignment explanation
Indices: 154832629--154832975 Score: 507
Period size: 177 Copynumber: 2.0 Consensus size: 175
154832619 CCAAATCTGT
* * * * * *
154832629 TATCTTGGATCTGCTTTAGTAAAATCATCTAAAGGTTAGATCTGTTATGTATCTGCCCTCCGTCG
1 TATCTTAGATATGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCTATGTATCTGCCCTCCATCA
* * *
154832694 AAATGGAGATGCTAGATCTGTTATCTTGGATCTACTTTGGTATGAGAACATCCGAAAGTCAAATC
66 AAATGGAGACGCTAGATCTGTTATCTTGGATCTACTTTGATATGAAAACATCCGAAAGTCAAATC
*
154832759 TGCTATGTCTTCTAGTTGTTCCTTGTAAACACAAGAATGCAAAAA
131 TGCTATGTCTTCGAGTTGTTCCTTGTAAACACAAGAATGCAAAAA
* *
154832804 TATCTTAGATATGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATC
1 TATCTTAGATATGCTTCAGTA-AAATCATCTAAAGGTTAGATCTGCTATGTATCTGCCCTCCATC
* * *
154832868 AAATATGGAGACGCTAGATCTGTTATCTTGGATCTGCTTTGATGTGAAAAACATCTGAAAGTCAA
65 AAA-ATGGAGACGCTAGATCTGTTATCTTGGATCTACTTTGATATG-AAAACATCCGAAAGTCAA
* *
154832933 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAAGACAAGAATGC
128 ATCTGCTATGTCTTCGAGTTGTTCCTTGTAAACACAAGAATGC
154832976 CAAATCTTGT
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
175 55 0.36
176 41 0.27
177 56 0.37
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (175 bp):
TATCTTAGATATGCTTCAGTAAAATCATCTAAAGGTTAGATCTGCTATGTATCTGCCCTCCATCA
AAATGGAGACGCTAGATCTGTTATCTTGGATCTACTTTGATATGAAAACATCCGAAAGTCAAATC
TGCTATGTCTTCGAGTTGTTCCTTGTAAACACAAGAATGCAAAAA
Found at i:154838081 original size:118 final size:118
Alignment explanation
Indices: 154837923--154838153 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
154837913 TATTTCCGGT
154837923 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
154837988 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
154838041 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
154838106 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
154838154 ATGGAAAACT
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:154839082 original size:5 final size:5
Alignment explanation
Indices: 154839072--154839128 Score: 57
Period size: 5 Copynumber: 11.6 Consensus size: 5
154839062 ATTAATATTT
* *
154839072 AAATA AAATA AAATA AAATA ATAA-A TAATA AAA-A GAA-A AAATA AAATAA
1 AAATA AAATA AAATA AAATA A-AATA AAATA AAATA AAATA AAATA AAAT-A
154839121 AAATA AAA
1 AAATA AAA
154839129 AGAAAGATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 8 0.18
5 29 0.66
6 7 0.16
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:154839120 original size:28 final size:28
Alignment explanation
Indices: 154839081--154839135 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
154839071 TAAATAAAAT
*
154839081 AAAATAAAATAATAAATAATAA-AAAGAA
1 AAAATAAAATAA-AAATAAAAAGAAAGAA
154839109 AAAATAAAATAAAAATAAAAAGAAAGA
1 AAAATAAAATAAAAATAAAAAGAAAGA
154839136 TTGGGTTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (28 bp):
AAAATAAAATAAAAATAAAAAGAAAGAA
Found at i:154845262 original size:40 final size:40
Alignment explanation
Indices: 154845188--154845332 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
154845178 CCGCACCAAG
* * * * * *
154845188 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
154845228 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
154845268 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
154845308 GCCTTCGGGTCTTAACCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATA
154845333 TTTCAATTTC
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:154845389 original size:48 final size:49
Alignment explanation
Indices: 154845298--154845390 Score: 136
Period size: 48 Copynumber: 1.9 Consensus size: 49
154845288 ATATAGCTAC
154845298 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATATTTCAATTTCGTCT
1 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATATTTCAATTTCGTCT
* * *
154845347 TAGCATAATTGTCTTCGGG-CTTAGCCCGGATATCA-TTCAATTTC
1 TAGCACAATTGCCTTCGGGTCTTAACCCGGATAT-ATTTCAATTTC
154845391 TCATGCACAC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
48 22 0.55
49 18 0.45
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (49 bp):
TAGCACAATTGCCTTCGGGTCTTAACCCGGATATATTTCAATTTCGTCT
Found at i:154853355 original size:40 final size:40
Alignment explanation
Indices: 154853281--154853426 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
154853271 CCGCACCAAG
* * * * * *
154853281 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
154853321 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
154853361 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
154853401 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
154853427 TTTGTGCCTT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:154862918 original size:28 final size:28
Alignment explanation
Indices: 154862849--154862949 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
154862839 GACAAGATTG
* * * *
154862849 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
154862879 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
154862907 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
154862936 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
154862950 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:154862943 original size:29 final size:28
Alignment explanation
Indices: 154862878--154862949 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
154862868 AAAATTGTAC
*
154862878 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
154862906 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
154862935 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
154862950 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:154865463 original size:28 final size:29
Alignment explanation
Indices: 154865365--154865463 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
154865355 TCACAAATTG
* *
154865365 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
154865394 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
154865422 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
154865450 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
154865464 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:154867087 original size:27 final size:26
Alignment explanation
Indices: 154866999--154867088 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 26
154866989 ATTCTGTTAA
* *
154866999 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
154867026 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
154867053 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
*
154867080 GTGACTCTG
1 GTGGCTCTG
154867089 TCAGACTATC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 9 0.16
27 41 0.72
28 7 0.12
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:154867275 original size:6 final size:6
Alignment explanation
Indices: 154867260--154867325 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
154867250 ACTCTGTTAC
* * *
154867260 CTGATA CTGATT CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
*
154867309 TTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
154867326 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:154867301 original size:31 final size:31
Alignment explanation
Indices: 154867237--154867316 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
154867227 TTGCATTCAC
* * *
154867237 ATTCTGATTTTTGACTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTCACCTAATACTG
* *
154867269 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACTG
154867300 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
154867317 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 35 0.83
32 7 0.17
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTAATACTG
Found at i:154869308 original size:27 final size:27
Alignment explanation
Indices: 154869277--154869435 Score: 176
Period size: 27 Copynumber: 5.9 Consensus size: 27
154869267 TTAGTTTACC
*
154869277 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
154869304 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* *
154869331 ATATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** * *
154869358 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** *
154869385 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
154869412 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
154869436 ACAGAATTAT
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.03
27 107 0.95
28 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:154869443 original size:27 final size:26
Alignment explanation
Indices: 154869271--154869485 Score: 79
Period size: 27 Copynumber: 8.0 Consensus size: 26
154869261 AATTCTTTAG
* * *
154869271 TTTACCAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
154869298 TTTGTAAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACC-AAATACCCTTGA
*** * *
154869325 TTTGTGATATTACCAAAATACCCCTGA
1 TTTACAAAATTACC-AAATACCCTTGA
*** **
154869352 TTTGTGAAATTATTGAAATACCCTTGA
1 TTTACAAAATTA-CCAAATACCCTTGA
* ** ** *
154869379 CTTGTAAAATTATTAAAATACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTTGA
* **
154869406 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTTGA
* **** *
154869433 TTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTTGA
154869460 TTTACAAAATTACCGAAATACCCTTG
1 TTTACAAAATTACC-AAATACCCTTG
154869486 TAGGGTAGAA
Statistics
Matches: 152, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 4 0.03
27 147 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTTGA
Found at i:154869503 original size:27 final size:27
Alignment explanation
Indices: 154869467--154870091 Score: 722
Period size: 27 Copynumber: 23.3 Consensus size: 27
154869457 CGATTTACAA
*
154869467 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154869494 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
154869521 AATTATCGAAATTCCCCGGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154869548 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
154869575 AATTACC-AGAATGCCCCTATAGGGAAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
154869602 AATTATCGAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154869629 AATTACC-AGAATACCTCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * *
154869656 AATTACCAAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154869683 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
154869710 AAATACCAAAATACCACTATAGGATGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154869737 AATTATCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154869764 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154869791 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154869818 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154869845 AATTACC-AGAATACCTCTGTAGGGTAC
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
154869872 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154869899 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** ** * * * *
154869926 AATTACTAAAATACCATTATAAGATGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
154869953 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154869979 AATTATCG-AATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154870005 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
154870032 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
154870059 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
154870085 AATTACC
1 AATTACC
154870092 ATTTTGCCCC
Statistics
Matches: 504, Mismatches: 86, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
25 3 0.01
26 47 0.09
27 451 0.89
28 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:154870550 original size:22 final size:22
Alignment explanation
Indices: 154870522--154870582 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
154870512 AGCCTTCTGA
* *
154870522 ATATGGCTTTGTGTCAACCTAC
1 ATATGGCTCTGTGCCAACCTAC
154870544 ATATGGCTCTGTGCCAACCTGA-
1 ATATGGCTCTGTGCCAACCT-AC
* *
154870566 TTATGGCTGTGTGCCAA
1 ATATGGCTCTGTGCCAA
154870583 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (22 bp):
ATATGGCTCTGTGCCAACCTAC
Found at i:154870771 original size:27 final size:27
Alignment explanation
Indices: 154870741--154870842 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
154870731 ATTCTATTAA
* *
154870741 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
154870768 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
** * *
154870795 GTGGCCCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * * *
154870822 GTGACTCTGTCATAATATCTG
1 GTGGCTATGCCACAATATCTG
154870843 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 48 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:154871017 original size:6 final size:6
Alignment explanation
Indices: 154871003--154871067 Score: 53
Period size: 6 Copynumber: 10.7 Consensus size: 6
154870993 TTCTGTTACT
* * * *
154871003 TGATAC TGATTC TGATTC TTATTC TG-TCACC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
154871052 TGATTC T-AGTTC TGAT
1 TGATTC TGA-TTC TGAT
154871068 AATGTTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
5 2 0.04
6 41 0.87
7 3 0.06
8 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:154871025 original size:31 final size:31
Alignment explanation
Indices: 154870990--154871058 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
154870980 TTCTAATTTT
* * *
154870990 TTATTCTGTTACTTGATACTGATTCTGATTC
1 TTATTCTGTCACCTAATACTGATTCTGATTC
*
154871021 TTATTCTGTCACCTAATTCTGATTCTGATTC
1 TTATTCTGTCACCTAATACTGATTCTGATTC
*
154871052 TGATTCT
1 TTATTCT
154871059 AGTTCTGATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.51
Consensus pattern (31 bp):
TTATTCTGTCACCTAATACTGATTCTGATTC
Found at i:154873045 original size:27 final size:27
Alignment explanation
Indices: 154873014--154873083 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
154873004 TTAGTTTACC
154873014 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTG
154873041 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTG
*
154873068 AAATTACTAAAATACC
1 AAATTACCAAAATACC
154873084 ATCGACTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTG
Found at i:154873191 original size:27 final size:27
Alignment explanation
Indices: 154873014--154873193 Score: 130
Period size: 27 Copynumber: 6.7 Consensus size: 27
154873004 TTAGTTTACC
*
154873014 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
*
154873041 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
154873068 AAATTACTAAAATACCATCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
154873095 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * **
154873122 AAATTGCCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
154873149 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
154873176 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
154873194 TGTTGGGTAG
Statistics
Matches: 125, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 124 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:154873210 original size:27 final size:27
Alignment explanation
Indices: 154873177--154873748 Score: 846
Period size: 27 Copynumber: 21.3 Consensus size: 27
154873167 CGATTTACAA
* *
154873177 AATTACCGAAATACCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873204 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154873231 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154873258 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873285 AATTACC-AGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
154873312 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154873339 AATTAGCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873366 AATTCCCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873393 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873420 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
154873447 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873474 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
154873501 AATTATCGAAATACCCCTGTAAGTTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154873527 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
154873554 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873581 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
154873608 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
154873635 AATTATCGCAATACCCCTGTAGGGGAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
154873662 AATTACCGAAATAGCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
154873689 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
154873716 AATTACCGAGATA-CCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
154873742 AATTACC
1 AATTACC
154873749 ATTTTGCCCC
Statistics
Matches: 491, Mismatches: 49, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
26 41 0.08
27 448 0.91
28 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:154874227 original size:22 final size:22
Alignment explanation
Indices: 154874176--154874239 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
154874166 TAAAGCCTTC
* *
154874176 TGATTATGGCTTTGTGTCAACT
1 TGATTATGGCTCTGTGCCAACT
*
154874198 T-ACATATGGCTCTGTGCCAACT
1 TGA-TTATGGCTCTGTGCCAACT
* *
154874220 TGATTATGGCTGTCTGCCAA
1 TGATTATGGCTCTGTGCCAA
154874240 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACT
Found at i:154874428 original size:27 final size:27
Alignment explanation
Indices: 154874398--154874496 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
154874388 ATTCTGTTAA
* *
154874398 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
154874425 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
154874452 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
154874479 GTGACTCTGTCACAATAT
1 GTGGCTATGCCACAATAT
154874497 TTGATAACTG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.13
27 47 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:154874674 original size:6 final size:6
Alignment explanation
Indices: 154874660--154874715 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
154874650 TTCTGTTACA
* * *
154874660 TGATAC TGATTC TGATTC TGATTC TG-TCACC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
154874709 TGATTC T
1 TGATTC T
154874716 AGTTTTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
5 1 0.02
6 38 0.90
7 2 0.05
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
TGATTC
Found at i:154877764 original size:40 final size:40
Alignment explanation
Indices: 154877670--154877854 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
154877660 TATTCGAATG
154877670 ATATCCGGGCTAAG-TCCCGAAGGC-TCTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCAT-TTGTGCTA-GTGACT
* * * *
154877711 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
*
154877751 ATATCCGGGCTAAGA-CCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* * *
154877791 ATATCCGGGCTAAGTTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
154877831 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
154877855 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.02
40 88 0.72
41 30 0.24
42 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:154877835 original size:80 final size:81
Alignment explanation
Indices: 154877670--154877861 Score: 248
Period size: 80 Copynumber: 2.4 Consensus size: 81
154877660 TATTCGAATG
* *
154877670 ATATCCGGGCTAAGTCCCGAAGGCTCTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCTCTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* *
154877735 ATTCGTGCGAGTTGCT
66 ATTCATGCGAGTTGCC
* * * *
154877751 ATATCCGGGCTAAGACCTGAAGGCAT-TTGTGCTA-GCGACTATATCCGGGCTAAGTTCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TCTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGG
* *
154877814 CATTTATGCTAG-TGACC
65 CATTCATGCGAGTTG-CC
154877831 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCTCTTGTGC
154877862 AAGTAGTTAT
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 8 0.08
80 58 0.60
81 30 0.31
82 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCTCTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCC
Found at i:154884253 original size:30 final size:30
Alignment explanation
Indices: 154884217--154884317 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
154884207 GACAAGATTG
* * *
154884217 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
154884247 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
154884275 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
154884304 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
154884318 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:154884329 original size:29 final size:28
Alignment explanation
Indices: 154884246--154884321 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
154884236 AAAATTGTAC
* *
154884246 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
154884274 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
154884303 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
154884322 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:154892140 original size:30 final size:30
Alignment explanation
Indices: 154892104--154892204 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
154892094 GACAAGATTG
* * *
154892104 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
154892134 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
154892162 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
154892191 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
154892205 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:154892216 original size:29 final size:28
Alignment explanation
Indices: 154892133--154892208 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
154892123 AAAATTGTAC
* *
154892133 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
154892161 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
154892190 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
154892209 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:154902944 original size:40 final size:40
Alignment explanation
Indices: 154902836--154902945 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
154902826 ATTGAATGAT
* * * * *
154902836 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
154902876 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
154902916 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
154902946 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:154902960 original size:40 final size:39
Alignment explanation
Indices: 154902836--154902985 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
154902826 ATTGAATGAT
* * * * * * *
154902836 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
154902876 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
154902916 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
154902956 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
154902986 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:154910995 original size:40 final size:40
Alignment explanation
Indices: 154910887--154910996 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
154910877 ATTGAATGAT
* * * * *
154910887 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
154910927 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
*
154910967 ATTCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
154910997 AAATTGTGAA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:154911024 original size:40 final size:39
Alignment explanation
Indices: 154910887--154911033 Score: 118
Period size: 40 Copynumber: 3.7 Consensus size: 39
154910877 ATTGAATGAT
* * * * * * *
154910887 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
154910927 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* * *
154910967 ATTCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
154911007 ATCCGGGTTAAGTCCCGAAGGCCTTTG
1 ATCCGGGTTAAGACCCGAAGGCATTTG
154911034 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
40 81 0.93
41 1 0.01
43 5 0.06
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:154912587 original size:40 final size:40
Alignment explanation
Indices: 154912559--154912684 Score: 198
Period size: 40 Copynumber: 3.1 Consensus size: 40
154912549 GGGACTCAAC
154912559 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
* * * * * *
154912599 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
154912639 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
154912679 CCGGAT
1 CCGGAT
154912685 ATCATTCGAA
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (40 bp):
CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
Found at i:154912615 original size:80 final size:80
Alignment explanation
Indices: 154912527--154912684 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 80
154912517 GCCCGGTTAC
*
154912527 AGTAACTCGCACGAATGCCTTCGGGA-CTCAACCCGGATTTAGTAGCTTGCTCGAAAGCCTTCGG
1 AGTAACTCGCACGAATGCCGTC-GGATCTCAACCCGGATTTAGTAGCTTGCTCGAAAGCCTTCGG
154912591 ATCTTAGTCCGGATTT
65 ATCTTAGTCCGGATTT
* * **
154912607 AGTAACTCGCACGTATGCCGTCGGATCTTAGTCCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGA
1 AGTAACTCGCACGAATGCCGTCGGATCTCAACCCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGA
154912672 TCTTAGTCCGGAT
66 TCTTAGTCCGGAT
154912685 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
79 3 0.04
80 69 0.96
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (80 bp):
AGTAACTCGCACGAATGCCGTCGGATCTCAACCCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGA
TCTTAGTCCGGATTT
Found at i:154914599 original size:30 final size:30
Alignment explanation
Indices: 154914532--154914600 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
154914522 ATGAATCGGA
* *
154914532 AGCTCTGGCACTAAGTGTGCGATTTAAATT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
**
154914562 AATTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
154914592 AGCTTTGGC
1 AGCTTTGGC
154914601 TACTGGAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTGTGCGATTTAAACT
Found at i:154932414 original size:43 final size:42
Alignment explanation
Indices: 154932364--154932485 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 42
154932354 AATGCTGACA
* * **
154932364 TCCCAGACGTGGTCTTACATGTAATTCAG-TATCAATGCCTCTG
1 TCCCAGACGTGGTCTTACACG-AAATCAGATA-CAATGCCGATG
*
154932407 TCCCAGACAG-GGTCTTACACGAAATCAGATACGATGCCGATG
1 TCCCAGAC-GTGGTCTTACACGAAATCAGATACAATGCCGATG
*
154932449 TCCCAGACATGGTCTTACACGACATATCAGAT-CAATG
1 TCCCAGACGTGGTCTTACACGA-A-ATCAGATACAATG
154932486 TTCACATTCC
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 34 0.51
43 25 0.37
44 8 0.12
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGAAATCAGATACAATGCCGATG
Found at i:154935253 original size:40 final size:40
Alignment explanation
Indices: 154935193--154935345 Score: 211
Period size: 40 Copynumber: 3.9 Consensus size: 40
154935183 TTATTTGATG
*
154935193 TGGAGTTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
154935233 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * * *
154935273 TGGAATTGTATCCGGGCCTAAAGATCCGCAGGCGTCGTAC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
154935313 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
154935346 GTGCTAAATA
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 14 0.14
40 87 0.86
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:154935674 original size:2 final size:2
Alignment explanation
Indices: 154935667--154935699 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
154935657 TGTATTCATG
154935667 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
154935700 TCGGCCAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:154937146 original size:24 final size:24
Alignment explanation
Indices: 154937094--154937259 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
154937084 ACTTTATCAT
*
154937094 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * * *
154937119 ATAACTGGGGAAAAATCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
154937143 ATAACTGAGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
154937166 ATAACTGGGGCCTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
154937190 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
154937214 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
154937237 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154937260 TCACTTCCTC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 42 0.34
24 70 0.57
25 11 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:154937169 original size:47 final size:48
Alignment explanation
Indices: 154937093--154937259 Score: 205
Period size: 47 Copynumber: 3.5 Consensus size: 48
154937083 TACTTTATCA
* * * *
154937093 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAATCCCTTTT
1 TATAACT-GAGGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
154937142 TATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCCTAAGCCCTTTT
1 TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
154937189 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
154937236 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGAGGCATAAGCCCTTTT
154937260 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 67 0.63
48 28 0.26
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
TATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:154937211 original size:71 final size:71
Alignment explanation
Indices: 154937094--154937259 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
154937084 ACTTTATCAT
* *
154937094 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAATCCCTTTTTATAACTGAGGCATAA
1 ATAACTGG-GGCCTAAGCC-CTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAA
154937158 GCCCTTTA
64 GCCCTTTA
* * * *
154937166 ATAACTGGGGCCTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCCTAAGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAAGC
154937231 CCTTTA
66 CCTTTA
*
154937237 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCCTAAGCCCTTTT
154937260 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCCTAAGCCCTTTTAATAACTGGGGAAAAAGCCCTTTTGATAACTGAGGCATAAGC
CCTTTA
Found at i:154937334 original size:20 final size:20
Alignment explanation
Indices: 154937309--154937375 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
154937299 TTATGAATAC
154937309 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
154937329 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
154937349 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
154937369 ACCATGT
1 ATCATGT
154937376 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:154937340 original size:11 final size:11
Alignment explanation
Indices: 154937309--154937364 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
154937299 TTATGAATAC
154937309 ATCATGTGCAT
1 ATCATGTGCAT
*
154937320 ATCA--TACAT
1 ATCATGTGCAT
154937329 ATCATGTGCAT
1 ATCATGTGCAT
*
154937340 ATCA--TACAT
1 ATCATGTGCAT
*
154937349 GTCATGTGCAT
1 ATCATGTGCAT
154937360 ATCAT
1 ATCAT
154937365 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:154937444 original size:25 final size:25
Alignment explanation
Indices: 154937412--154937459 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
154937402 ATACATAAAC
* * *
154937412 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
154937437 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
154937460 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:154938628 original size:26 final size:27
Alignment explanation
Indices: 154938595--154938655 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
154938585 TCATACGGAA
*
154938595 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGCA-ATTACGGTCACTTTAC
*
154938620 CATACAGGGGAATTACGGTCACTTTAC
1 CATACAGGGCAATTACGGTCACTTTAC
*
154938647 CCTACAGGG
1 CATACAGGG
154938656 GCTTTACGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 7 0.23
26 6 0.20
27 17 0.57
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (27 bp):
CATACAGGGCAATTACGGTCACTTTAC
Found at i:154938640 original size:27 final size:27
Alignment explanation
Indices: 154938610--154938674 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
154938600 GGGCATATTC
154938610 GTCATTTTACCATACAGGGGAATTACG
1 GTCATTTTACCATACAGGGGAATTACG
* * **
154938637 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGAATTACG
*
154938664 GTCTTTTTACC
1 GTCATTTTACC
154938675 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGAATTACG
Found at i:154938755 original size:27 final size:27
Alignment explanation
Indices: 154938725--154938997 Score: 131
Period size: 27 Copynumber: 10.1 Consensus size: 27
154938715 GTAAATCTAC
154938725 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
154938752 AAACCAATGGTATTTCTA-TCATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
154938778 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
154938808 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** * ***
154938835 AAATTGAGGGTA-TTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** **
154938861 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** **
154938888 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
154938915 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** *
154938942 AAATCGAGGGTA-AACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *** *
154938968 AAATCAAGGGTAAAACAGTAATTATGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
154938995 AAA
1 AAA
154938998 TCGAGGTTAA
Statistics
Matches: 200, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 43 0.22
27 133 0.67
28 7 0.04
29 16 0.08
30 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:154938853 original size:26 final size:26
Alignment explanation
Indices: 154938815--154938939 Score: 153
Period size: 27 Copynumber: 4.7 Consensus size: 26
154938805 TGTAAATCAG
*
154938815 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * *
154938842 GGGTA-TTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CTA
154938868 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
*
154938894 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAA-CTA
*
154938922 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
154938940 GTAAATCGAG
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
26 23 0.27
27 60 0.71
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:154938878 original size:53 final size:54
Alignment explanation
Indices: 154938815--154938953 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
154938805 TGTAAATCAG
154938815 GGGTATTTTGGTAATTTTACAAATTGAGGGTA-TTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * *
154938868 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
154938922 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
154938954 AACAGTAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
52 1 0.01
53 29 0.39
54 44 0.59
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:154938998 original size:27 final size:27
Alignment explanation
Indices: 154938931--154939052 Score: 156
Period size: 27 Copynumber: 4.6 Consensus size: 27
154938921 AGGGTATTTT
*
154938931 AGTAATTTTGTAAATCGAGGGT-AAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* *
154938957 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
*
154938984 AGTAATTATGTAAATCGAGGTTAAAAC
1 AGTAATTATGTAAATCGAGGGTAAAAC
* * *
154939011 GGTAATTATGTAAATCGGGGGTAAAAT
1 AGTAATTATGTAAATCGAGGGTAAAAC
* *
154939038 GGTAATTCTGTAAAT
1 AGTAATTATGTAAAT
154939053 TGGGGGTACT
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 20 0.24
27 65 0.76
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AGTAATTATGTAAATCGAGGGTAAAAC
Found at i:154939096 original size:27 final size:27
Alignment explanation
Indices: 154939066--154939128 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
154939056 GGGTACTTTG
*
154939066 GTAATTTTACAAGTCGAAGGCATTTCA
1 GTAATTTTACAAATCGAAGGCATTTCA
* *
154939093 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGCATTTCA
*
154939120 GTATTTTTA
1 GTAATTTTA
154939129 TAAACTAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGCATTTCA
Found at i:154940572 original size:21 final size:23
Alignment explanation
Indices: 154940543--154940584 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
154940533 TTTAGCAAGA
*
154940543 ACAACATT-AATCATAGAAACAG
1 ACAACATTAAATCACAGAAACAG
154940565 ACAA-ATTAAATCACAGAAAC
1 ACAACATTAAATCACAGAAAC
154940585 TTCGCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.57, C:0.19, G:0.07, T:0.17
Consensus pattern (23 bp):
ACAACATTAAATCACAGAAACAG
Found at i:154943512 original size:39 final size:40
Alignment explanation
Indices: 154943462--154943572 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
154943452 ATCACGATTT
* *
154943462 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-TAACTACT-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAAT-CTCA
* *
154943501 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAATCTCA
* * *
154943541 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
154943573 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 29 0.47
40 33 0.53
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAATCTCA
Found at i:154943568 original size:40 final size:40
Alignment explanation
Indices: 154943431--154943572 Score: 137
Period size: 39 Copynumber: 3.6 Consensus size: 40
154943421 CCGCACCAAG
* * * * * * *
154943431 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
154943470 GCCTTCGGGTCTTAGCCCGGAT-TAACTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
154943509 GCCTTCGGGTCTTAACCCGGATATAAAT-TTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACT-AGCACAATT
* *
154943549 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
154943573 CATTCAATTT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 46 0.53
40 40 0.47
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:154951558 original size:40 final size:40
Alignment explanation
Indices: 154951514--154951625 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
154951504 ATCACGATTT
* * *
154951514 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACTACT-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAAT-CTCA
* *
154951554 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAATTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAATCTCA
* * *
154951594 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
154951626 CATTCAATTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.02
40 61 0.98
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAATCTCA
Found at i:154955922 original size:56 final size:56
Alignment explanation
Indices: 154955836--154955962 Score: 164
Period size: 56 Copynumber: 2.3 Consensus size: 56
154955826 TAATTATATG
* * * * * *
154955836 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTTTGTGAGACATCCAGAA
1 TGGCACTTAATGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
*
154955892 TGGCACTTATTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAATGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
* * *
154955948 CGACACTTAGTGTGC
1 TGGCACTTAATGTGC
154955963 AAGGTATCAG
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (56 bp):
TGGCACTTAATGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
Found at i:154955979 original size:56 final size:55
Alignment explanation
Indices: 154955847--154955997 Score: 153
Period size: 56 Copynumber: 2.7 Consensus size: 55
154955837 GGCACTTAAC
* * * * * * *
154955847 GTGCGAAGTATCGGGGATGGCACTTAGTTTGTGAGACATCCAGAATGGCACTTATT
1 GTGCGAAGTATC-AGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
*
154955903 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
1 GTGCGAAGTATC-AGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
* *
154955959 GTGC-AAGGTATCAGGTATGGCA-TCTAATGTGCGATACAT
1 GTGCGAA-GTATCAGG-ATGGCACT-TAGTGTGCGAAACAT
154955998 TGAATATTCA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
55 6 0.07
56 75 0.93
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (55 bp):
GTGCGAAGTATCAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
Found at i:154956076 original size:32 final size:32
Alignment explanation
Indices: 154956040--154956106 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
154956030 TGAGTATGAG
* *
154956040 ATTGGTACGAGATGATAAAGGTATATACGGAA
1 ATTGGTACAAGATGATAAAGGTATATACGAAA
* * * *
154956072 ATTGGTACAATATGGTATAGGTATGTACGAAA
1 ATTGGTACAAGATGATAAAGGTATATACGAAA
154956104 ATT
1 ATT
154956107 CAATTGAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (32 bp):
ATTGGTACAAGATGATAAAGGTATATACGAAA
Found at i:154958229 original size:42 final size:42
Alignment explanation
Indices: 154958079--154958245 Score: 122
Period size: 42 Copynumber: 3.9 Consensus size: 42
154958069 TAAGATGACA
* * ****
154958079 ATGCCATATCCCATATATGATCTTACATGGGATCACATATACCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCACATAT--CG
* ** * *
154958123 ATGCCGATAGCCCA-ACTATGGTCTTACACAATTTCCCATATCA
1 ATGCC-ATATCCCAGA-TATGGTCTTACACAAAATCACATATCG
* * * *
154958166 ATGCGATGTCCCGGA-ATTGGTCTTACACAAAATCACGTATCG
1 ATGCCATATCCCAGATA-TGGTCTTACACAAAATCACATATCG
*
154958208 ATGCCATATCCCAGATATGGTCTTTACACGAAATCACA
1 ATGCCATATCCCAGATATGGTC-TTACACAAAATCACA
154958246 CATAACCCTA
Statistics
Matches: 94, Mismatches: 23, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.01
42 42 0.45
43 20 0.21
44 6 0.06
45 25 0.27
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCACATATCG
Found at i:154959764 original size:30 final size:29
Alignment explanation
Indices: 154959728--154959794 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
154959718 ACTAAACCTC
154959728 ACATATAATAAAGAAT-AGCCACAAAGGCTA
1 ACATATAA-AAA-AATCAGCCACAAAGGCTA
* * *
154959758 ACATATAACAAATTCAGCCACAAAGGCTC
1 ACATATAAAAAAATCAGCCACAAAGGCTA
154959787 ACATATAA
1 ACATATAA
154959795 CATATTCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 23 0.70
30 8 0.24
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.18
Consensus pattern (29 bp):
ACATATAAAAAAATCAGCCACAAAGGCTA
Found at i:154959780 original size:29 final size:29
Alignment explanation
Indices: 154959744--154959813 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
154959734 AATAAAGAAT
154959744 AGCCACAAAGGCTAACATATAACAAATTC
1 AGCCACAAAGGCTAACATATAACAAATTC
* *
154959773 AGCCACAAAGGCTCACATATAACATATTC
1 AGCCACAAAGGCTAACATATAACAAATTC
**
154959802 AATCACAAAGGC
1 AGCCACAAAGGC
154959814 ATCACTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (29 bp):
AGCCACAAAGGCTAACATATAACAAATTC
Found at i:154962663 original size:40 final size:40
Alignment explanation
Indices: 154962597--154962763 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
154962587 AAATTGAATG
* * *
154962597 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
154962636 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
154962676 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
154962716 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
154962756 ATATCCGG
1 ATATCCGG
154962764 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:154970657 original size:40 final size:40
Alignment explanation
Indices: 154970598--154970739 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
154970588 AAATTGAATG
* * *
154970598 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
154970638 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
154970678 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
154970718 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
154970740 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:154970740 original size:40 final size:39
Alignment explanation
Indices: 154970637--154970765 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
154970627 TGCTGGAAAT
* * *
154970637 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
154970677 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
154970717 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
154970757 TATATCCGG
1 TATATCCGG
154970766 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:154974693 original size:27 final size:26
Alignment explanation
Indices: 154974656--154974767 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
154974646 AGCATGGCTG
* *
154974656 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
154974682 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
154974710 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
154974737 CCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
154974764 CCAG
1 CCAG
154974768 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.09
27 54 0.69
28 17 0.22
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:154974715 original size:54 final size:54
Alignment explanation
Indices: 154974656--154974767 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
154974646 AGCATGGCTG
*
154974656 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
154974710 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
154974764 CCAG
1 CCAG
154974768 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:154976408 original size:26 final size:26
Alignment explanation
Indices: 154976379--154976488 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
154976369 CATGAAATTC
154976379 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
154976405 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
154976431 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
154976457 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
154976483 TTATCA
1 TTATCA
154976489 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:154978735 original size:31 final size:31
Alignment explanation
Indices: 154978675--154978754 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
154978665 TCAAACATGT
* *
154978675 ACTGGGCC-ATAGCCCTTCTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCAAATTTCATAAC
**
154978707 ACTGGGCCGAAGCCTTTTCAAATTTCATATT
1 ACTGGGCCGAAGCCTTTTCAAATTTCATAAC
154978738 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
154978755 ACGTAAACGG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
31 32 0.74
32 10 0.23
33 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAATTTCATAAC
Found at i:154979022 original size:47 final size:48
Alignment explanation
Indices: 154978945--154979110 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
154978935 TGCTTTATCA
* *
154978945 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
154978994 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAG-CCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
154979040 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
154979087 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
154979111 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
46 25 0.23
47 62 0.58
48 7 0.07
49 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:154979025 original size:23 final size:23
Alignment explanation
Indices: 154978967--154979109 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
154978957 CCTAGCCTCT
*
154978967 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
154978990 TTTTTATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
* *
154979014 TTTAATAACTGGGGCGTAAGCCT
1 TTTAATAACTGGGGCATAAGCCC
*
154979037 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
154979060 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
154979084 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
154979107 TTT
1 TTT
154979110 TTCACTTCCT
Statistics
Matches: 109, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
23 65 0.60
24 44 0.40
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:154979061 original size:70 final size:71
Alignment explanation
Indices: 154978946--154979110 Score: 253
Period size: 70 Copynumber: 2.3 Consensus size: 71
154978936 GCTTTATCAT
* *
154978946 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
154979010 GCCCTTTA
64 GCCCTTTA
* * *
154979018 ATAACTGGGGCGTAAG-CCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
154979082 CCTTTA
66 CCTTTA
154979088 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154979111 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 65 0.76
71 11 0.13
72 10 0.12
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:154979182 original size:9 final size:9
Alignment explanation
Indices: 154979168--154979224 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
154979158 ATCTCGTGTG
154979168 CATATCATA
1 CATATCATA
*
154979177 CATATCATGTG
1 CATATCA--TA
154979188 CATATCATA
1 CATATCATA
* *
154979197 CATGTCATGTG
1 CATATCA--TA
154979208 CATATCATA
1 CATATCATA
154979217 CATATCAT
1 CATATCAT
154979225 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:154979187 original size:20 final size:20
Alignment explanation
Indices: 154979164--154979226 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
154979154 GAACATCTCG
154979164 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
154979184 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
154979204 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
154979224 TGT
1 TGT
154979227 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:154979304 original size:24 final size:24
Alignment explanation
Indices: 154979263--154979309 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
154979253 ATATATAAAC
* * *
154979263 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
154979287 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
154979310 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:154980523 original size:27 final size:27
Alignment explanation
Indices: 154980461--154980538 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
154980451 GGGCATATTC
154980461 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
154980488 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
154980515 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
154980539 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:154980609 original size:27 final size:27
Alignment explanation
Indices: 154980557--154980796 Score: 175
Period size: 27 Copynumber: 8.9 Consensus size: 27
154980547 TTCATCCTAC
* * * *
154980557 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** * *
154980584 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * *
154980611 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTATAAACT
* *
154980639 CAAGGGTATTTT-GTAACTTTGTAAA-T
1 -AAGGGTATTTTGGTAATTTTATAAACT
* * *
154980665 CAGGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTATAAACT
* * * * *
154980693 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
154980720 AAGGGTATTTTGGTAATTTTA-AAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
154980746 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
154980773 AAGGGTATTTTAGT-ATTTTGTAAA
1 AAGGGTATTTTGGTAATTTTATAAA
154980797 TCGAGGGTAA
Statistics
Matches: 168, Mismatches: 39, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
26 44 0.26
27 103 0.61
28 12 0.07
29 9 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACT
Found at i:154980754 original size:53 final size:54
Alignment explanation
Indices: 154980556--154980805 Score: 174
Period size: 53 Copynumber: 4.6 Consensus size: 54
154980546 TTTCATCCTA
* * * * ***
154980556 CAAGGGTGTTTTGGTAAATCTACAAACTA-AGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAAC
* * * * ** *
154980610 CAATGGTATTTCT-ATAATTTTTAGAAAGTCA-AGGGTATTT-TGTAACTTT-GTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T-AGAGGGTATTTCGGTAA-TTTCACAAAC
* *
154980665 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAAC
* *
154980719 CAAGGGTATTTTGGTAATTTTA-AAACTAG-GGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAAC
* * ** *
154980772 TAAGGGTATTTTAGT-ATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTA
154980806 AAACAGTAAT
Statistics
Matches: 159, Mismatches: 26, Indels: 23
0.76 0.12 0.11
Matches are distributed among these distances:
52 7 0.04
53 59 0.37
54 51 0.32
55 29 0.18
56 13 0.08
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAAC
Found at i:154980830 original size:27 final size:27
Alignment explanation
Indices: 154980791--154980993 Score: 275
Period size: 27 Copynumber: 7.6 Consensus size: 27
154980781 TTTAGTATTT
*
154980791 TGTAAATCGAGGGTAAAACAGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* **
154980818 TGTAAATCAAGGGTAAAATAGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* *
154980845 TATAAATCGAGGGTAAAATGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
154980872 TGTAAATCGAGGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
* * *
154980899 TGTAAGTCGAGGGTAAAACGATAATTA
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
154980926 TGTAAATC-AGGGGTAAAACGGTAATTA
1 TGTAAATCGA-GGGTAAAACGGTAATTC
*
154980953 TATAAATCG-GGGTAAAACGGTAATTC
1 TGTAAATCGAGGGTAAAACGGTAATTC
*
154980979 TGTAAATCGGGGGTA
1 TGTAAATCGAGGGTA
154980994 CTTTGGTAAT
Statistics
Matches: 158, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
26 25 0.16
27 133 0.84
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
TGTAAATCGAGGGTAAAACGGTAATTC
Found at i:154981059 original size:27 final size:27
Alignment explanation
Indices: 154980982--154981087 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 27
154980972 GTAATTCTGT
* *
154980982 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
* *
154981009 AAGTCGA-AGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
154981035 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
154981062 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
154981088 GTAAACTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
25 3 0.05
26 20 0.30
27 43 0.65
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:154981094 original size:28 final size:27
Alignment explanation
Indices: 154981017--154981096 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
154981007 ACAAGTCGAA
*
154981017 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGG
*
154981044 GTATTTCAGTATTTTTACAAACTAAGG
1 GTATTTCAGTAATTTTACAAACTAAGG
* *
154981071 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
154981097 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGG
Found at i:154983902 original size:31 final size:31
Alignment explanation
Indices: 154983825--154983904 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
154983815 CTCAAACATG
* *
154983825 TACTGGGCC-ATAGCCCTTTCATATTTCATAA
1 TACTGGGCCGA-AGCCTTTTCAAATTTCATAA
* *
154983856 CACTGGGCCGAAGCCTTTTCAAATTTCATAT
1 TACTGGGCCGAAGCCTTTTCAAATTTCATAA
154983887 TACTGGGCCGAAGCCTTT
1 TACTGGGCCGAAGCCTTT
154983905 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 42 0.98
32 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (31 bp):
TACTGGGCCGAAGCCTTTTCAAATTTCATAA
Found at i:154984148 original size:24 final size:24
Alignment explanation
Indices: 154984096--154984261 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
154984086 GCTTTATCAT
*
154984096 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
154984121 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
154984145 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
154984168 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
154984192 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
154984216 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
154984239 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154984262 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:154984172 original size:47 final size:48
Alignment explanation
Indices: 154984095--154984261 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
154984085 TGCTTTATCA
* *
154984095 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
154984144 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
154984191 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
154984238 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
154984262 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:154984196 original size:71 final size:71
Alignment explanation
Indices: 154984096--154984261 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
154984086 GCTTTATCAT
* *
154984096 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
154984160 GCCCTTTA
64 GCCCTTTA
* * *
154984168 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
154984233 CCTTTA
66 CCTTTA
154984239 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154984262 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:154984332 original size:9 final size:9
Alignment explanation
Indices: 154984318--154984374 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
154984308 ATCTCGTGTG
154984318 CATATCATA
1 CATATCATA
*
154984327 CATATCATGTG
1 CATATCA--TA
154984338 CATATCATA
1 CATATCATA
* *
154984347 CATGTCATGTG
1 CATATCA--TA
154984358 CATATCATA
1 CATATCATA
154984367 CATATCAT
1 CATATCAT
154984375 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:154984337 original size:20 final size:20
Alignment explanation
Indices: 154984314--154984376 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
154984304 GAACATCTCG
154984314 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
154984334 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
154984354 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
154984374 TGT
1 TGT
154984377 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:154984454 original size:24 final size:24
Alignment explanation
Indices: 154984413--154984459 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
154984403 ATATATAAAC
* * *
154984413 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
154984437 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
154984460 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:154985669 original size:27 final size:27
Alignment explanation
Indices: 154985607--154985684 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
154985597 GGGCATATTC
154985607 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
154985634 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
154985661 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
154985685 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:154985755 original size:27 final size:27
Alignment explanation
Indices: 154985725--154985980 Score: 140
Period size: 27 Copynumber: 9.4 Consensus size: 27
154985715 GTAAATCTAC
154985725 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
154985752 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
154985778 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
154985808 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** * ***
154985835 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** *
154985862 AAACCAAGGGTATTTTGGTAATTTT-A
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** **
154985888 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
154985915 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * *** *
154985942 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
154985969 AAATCAAGGGTA
1 AAACCAAGGGTA
154985981 AAATAGTAAT
Statistics
Matches: 184, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 24 0.13
27 135 0.73
28 7 0.04
29 17 0.09
30 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Done.