Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 501 of 770
Found at i:154985917 original size:53 final size:54
Alignment explanation
Indices: 154985702--154985953 Score: 183
Period size: 54 Copynumber: 4.6 Consensus size: 54
154985692 TTTCATCCTA
* * * * * ***
154985702 CAAGGGTGTTTTGGTAAATCTACAAACCA-AGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAAC
* * * * ** *
154985756 CAATGGTATTTCT-ATAATTTTTAGAAAGTCA-AGGGTATTTCTGTAACTTT-GTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T-AGAGGGTATTTCGGTAA-TTTCACAAAC
* *
154985812 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAAC
* *
154985866 CAAGGGTATTTTGGTAATTTTA-AAACTAG-GGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAAC
* * ** *
154985919 TAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTA
154985954 AAACAGTAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
53 49 0.30
54 61 0.38
55 16 0.10
56 32 0.20
57 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAAC
Found at i:154985953 original size:80 final size:81
Alignment explanation
Indices: 154985785--154985938 Score: 224
Period size: 80 Copynumber: 1.9 Consensus size: 81
154985775 TTTAGAAAGT
* * *
154985785 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
*
154985850 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
154985866 CAAGGGTATTT-TGGTAA-TTT-TAAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
1 CAAGGGTATTTCT-GTAACTTTGTAAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
*
154985928 TTTAGTAATTT
64 TTCAGTAATTT
154985939 TGTAAATCGA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
79 5 0.08
80 46 0.70
81 15 0.23
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCTGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
CAGTAATTTCACAAAC
Found at i:154985981 original size:27 final size:27
Alignment explanation
Indices: 154985931--154986139 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
154985921 AGGGTATTTT
*
154985931 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
154985958 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
154985985 AGTAATTCTATAAATCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
154986011 TGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
154986038 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
154986065 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
154986092 GGTAATTATATAAATCG-GGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
154986118 GGTAATTCTGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
154986140 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
26 55 0.34
27 107 0.66
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:154986016 original size:80 final size:81
Alignment explanation
Indices: 154985932--154986133 Score: 268
Period size: 80 Copynumber: 2.5 Consensus size: 81
154985922 GGGTATTTTA
* * *
154985932 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG-TAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA-AGATAATTATAT
*
154985996 AAATC-GAGGGTAAAA-T
65 AAATCAG-GGGTAAAACG
* * * * *
154986012 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAAGATAATTATATA
154986077 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
*
154986093 GTAATTATATAAATCG-GGGTAAAACGGTAATTCTGTAAATC
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC
154986134 GGGGTACTTT
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
79 1 0.01
80 92 0.85
81 15 0.14
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAAGATAATTATATA
AATCAGGGGTAAAACG
Found at i:154986132 original size:107 final size:106
Alignment explanation
Indices: 154985932--154986139 Score: 303
Period size: 107 Copynumber: 2.0 Consensus size: 106
154985922 GGGTATTTTA
* * * *
154985932 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATA
*
154985997 AATCGAGGGTAAAATGTAATTCTGTAAATCGAGGGTAAAACG
66 AATCGAGGGTAAAAGGTAATTCTGTAAATCG-GGGTAAAACG
* * *
154986039 GTAATTCTGTAAGTCGAGGGTAAAAC-GATAATTATGTAAATCAGGGGTAAAACGGTAATTATAT
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTATGTAAATCAAGGGTAAAACAGTAATTATAT
154986103 AAATCG-GGGTAAAACGGTAATTCTGTAAATCGGGGTA
65 AAATCGAGGGTAAAA-GGTAATTCTGTAAATCGGGGTA
154986140 CTTTGGTAAT
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
106 14 0.15
107 77 0.85
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (106 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATA
AATCGAGGGTAAAAGGTAATTCTGTAAATCGGGGTAAAACG
Found at i:154986175 original size:27 final size:26
Alignment explanation
Indices: 154986145--154986234 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
154986135 GGGTACTTTG
154986145 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
154986172 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
154986199 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
154986226 GTAATTTTA
1 GTAATTTTA
154986235 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:154986193 original size:80 final size:79
Alignment explanation
Indices: 154985805--154986193 Score: 245
Period size: 80 Copynumber: 4.8 Consensus size: 79
154985795 TCTGTAACTT
* * * * * * *
154985805 TGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG
1 TGTAAATC-GGGGTAATTTGGTAATTTTAC-AATCGAGGGTATTTCAGTAATTTTATAAATCGAG
****
154985870 GGTATTTTGGTAATT-
64 GGTAAAACGGTAATTC
* * * * * *
154985885 T-TAAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGA
1 TGT-AAA-TCGGGGTAATTTGGTAATTTTACAATC-GAGGGTATTTCAGTAATTTTATAAATCGA
*
154985949 GGGTAAAACAGTAATTC
63 GGGTAAAACGGTAATTC
* ** * ** * *
154985966 TGTAAATCAAGGGTAAAATAGTAATTCTATA-AATCGAGGGTA--AAATGTAATTCTGTAAATCG
1 TGTAAATC-GGGGTAATTTGGTAATT-T-TACAATCGAGGGTATTTCA-GTAATTTTATAAATCG
154986028 AGGGTAAAACGGTAATTC
62 AGGGTAAAACGGTAATTC
* *** * *** * *
154986046 TGTAAGTCGAGGGTAAAACGATAATTATGTA-AATC-AGGGGTAAAACGGTAATTATATAAATCG
1 TGTAAATCG-GGGTAATTTGGTAATT-T-TACAATCGA-GGGTATTTCAGTAATTTTATAAATCG
154986109 -GGGTAAAACGGTAATTC
62 AGGGTAAAACGGTAATTC
* * *
154986126 TGTAAATCGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGG
1 TGTAAATCGGGGTAATTTGGTAATTTTACAA-TCGAGGGTATTTCAGTAATTTTATAAATCGAGG
154986191 GTA
65 GTA
154986194 TTTCAGTATT
Statistics
Matches: 240, Mismatches: 52, Indels: 34
0.74 0.16 0.10
Matches are distributed among these distances:
77 2 0.01
78 3 0.01
79 37 0.15
80 153 0.64
81 37 0.15
82 6 0.03
83 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (79 bp):
TGTAAATCGGGGTAATTTGGTAATTTTACAATCGAGGGTATTTCAGTAATTTTATAAATCGAGGG
TAAAACGGTAATTC
Found at i:154986248 original size:27 final size:27
Alignment explanation
Indices: 154986145--154986249 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
154986135 GGGTACTTTG
* *
154986145 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
154986172 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
154986199 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
154986226 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
154986250 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:154989311 original size:23 final size:23
Alignment explanation
Indices: 154989252--154989393 Score: 189
Period size: 23 Copynumber: 6.1 Consensus size: 23
154989242 CCTAGCCTCT
*
154989252 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
154989275 TTT-TTTACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
154989297 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
154989320 TTTTATAACTGGGGC-TAATAGCCC
1 TTTAATAACTGGGGCAT-A-AGCCC
*
154989344 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
154989368 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
154989391 TTT
1 TTT
154989394 TTCACTTCCT
Statistics
Matches: 105, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
22 20 0.19
23 59 0.56
24 10 0.10
25 15 0.14
26 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:154989358 original size:48 final size:47
Alignment explanation
Indices: 154989230--154989394 Score: 212
Period size: 48 Copynumber: 3.5 Consensus size: 47
154989220 TGCTTTATCA
* *
154989230 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT
* *
154989278 T-TTACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
154989323 TATAACTGGGGC-TAATAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCAT-A-AGCCCTTTTAATAACTGGGGCATAAGCCCTTT
*
154989371 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
154989395 TCACTTCCTC
Statistics
Matches: 103, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
45 26 0.25
46 15 0.15
47 24 0.23
48 37 0.36
49 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:154989366 original size:71 final size:69
Alignment explanation
Indices: 154989231--154989394 Score: 233
Period size: 71 Copynumber: 2.3 Consensus size: 69
154989221 GCTTTATCAT
* *
154989231 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTTACTGGGGCATAAGC
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTTAACTGGGGCATAAGC
154989295 CCTTTA
64 CCTTTA
* *
154989301 ATAACTGGGGCGTAAGCCCTTTT-ATAACTGGGGCTAATAGCCCTTTTGATAACTGGGGCATAAG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGC-AAAAGCCCTTTT--TAACTGGGGCATAAG
154989365 CCCTTTA
63 CCCTTTA
154989372 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
154989395 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
68 11 0.13
69 20 0.23
70 12 0.14
71 43 0.50
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (69 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTTAACTGGGGCATAAGCCC
TTTA
Found at i:154989466 original size:9 final size:9
Alignment explanation
Indices: 154989452--154989508 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
154989442 ATCTCGTGTG
154989452 CATATCATA
1 CATATCATA
*
154989461 CATATCATGTG
1 CATATCA--TA
154989472 CATATCATA
1 CATATCATA
* *
154989481 CATGTCATGTG
1 CATATCA--TA
154989492 CATATCATA
1 CATATCATA
154989501 CATATCAT
1 CATATCAT
154989509 GTATATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:154989471 original size:20 final size:20
Alignment explanation
Indices: 154989448--154989510 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
154989438 GAACATCTCG
154989448 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
154989468 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
154989488 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
154989508 TGT
1 TGT
154989511 ATATCAAANN
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:154995905 original size:40 final size:39
Alignment explanation
Indices: 154995740--154995923 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
154995730 AAATTGAATG
* * *
154995740 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
154995780 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
154995820 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
154995860 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
154995899 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
154995924 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:154995948 original size:80 final size:81
Alignment explanation
Indices: 154995780--154995968 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
154995770 GCTGGAAATT
* * * *
154995780 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
154995845 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
154995861 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
154995924 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
154995940 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
154995969 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:155004745 original size:40 final size:40
Alignment explanation
Indices: 155004628--155004850 Score: 267
Period size: 39 Copynumber: 5.7 Consensus size: 40
155004618 GCTACTCATT
** *
155004628 CAAATGCCTTCGGG-AATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGTCCGGATT-TAGTAACTCGCA
* * *
155004667 CAAATGCCTTCGGGACTTA-ACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCA
155004706 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCA
*
155004746 CAAATGCCTT-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCA
* * * * *
155004785 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAAC-TCGCA
* *
155004826 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGTCTTAGTCCGGA
155004851 CATCATTTGA
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
39 84 0.52
40 72 0.44
41 7 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCA
Found at i:155004773 original size:79 final size:78
Alignment explanation
Indices: 155004628--155004848 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 78
155004618 GCTACTCATT
** *
155004628 CAAATGCCTTCGGG-AATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGTCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCG
155004691 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
155004706 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTT-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTA-ACCCG
155004770 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * * *
155004785 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCCG
155004849 GACATCATTT
Statistics
Matches: 124, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
77 3 0.02
78 18 0.15
79 86 0.69
80 14 0.11
81 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGTCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGAT
TTAGTAACTCGCA
Found at i:155020772 original size:40 final size:40
Alignment explanation
Indices: 155020728--155020837 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
155020718 TTCACAATTT
* *
155020728 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
155020768 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
155020808 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
155020838 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:155028824 original size:40 final size:40
Alignment explanation
Indices: 155028780--155028889 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
155028770 TTCACAATTT
* *
155028780 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
155028820 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
155028860 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
155028890 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:155031434 original size:27 final size:27
Alignment explanation
Indices: 155031390--155031453 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
155031380 TGGATAAGTT
*
155031390 GTAGAGTTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
155031417 GTAGAATTACT-AAGATACCCTTGTGGG
1 GTAGAATTACTGAA-ATACCCCTGTAGG
*
155031444 GTAAAATTAC
1 GTAGAATTAC
155031454 CAAAAATGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Found at i:155032156 original size:27 final size:26
Alignment explanation
Indices: 155032112--155032163 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
155032102 CTCGCTGCAA
*
155032112 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
155032139 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
155032164 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:155037247 original size:69 final size:69
Alignment explanation
Indices: 155037136--155037275 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
155037126 GTTGAACTTT
155037136 AGTATAGCCTTTCATCCTCAGACTGATGGTCAGTCTGAAAGGGTTATTCAGATTCTGGAAGACAT
1 AGTATAGCCTTTCATCCTCAGACTGATGGTCAGTCTGAAAGGGTTATTCAGATTCTGGAAGACAT
155037201 GTTG
66 GTTG
155037205 AGTATAGCCTTTCATCCTCAGACTGATGGTCAGTCTGAAAGGGTTATTCAGATTCTGGAAGACAT
1 AGTATAGCCTTTCATCCTCAGACTGATGGTCAGTCTGAAAGGGTTATTCAGATTCTGGAAGACAT
155037270 GTTG
66 GTTG
155037274 AG
1 AG
155037276 GGGATGCGTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (69 bp):
AGTATAGCCTTTCATCCTCAGACTGATGGTCAGTCTGAAAGGGTTATTCAGATTCTGGAAGACAT
GTTG
Found at i:155040723 original size:40 final size:39
Alignment explanation
Indices: 155040657--155040821 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
155040647 AAATTGAATG
* *
155040657 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
155040696 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
155040736 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
155040774 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
155040814 ATATCCGG
1 ATATCCGG
155040822 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:155040789 original size:38 final size:38
Alignment explanation
Indices: 155040658--155040805 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
155040648 AATTGAATGA
* * * *
155040658 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
155040697 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
155040735 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
155040775 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
155040806 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:155040820 original size:78 final size:78
Alignment explanation
Indices: 155040657--155040821 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
155040647 AAATTGAATG
*
155040657 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
155040722 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
155040736 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
155040799 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
155040814 ATATCCGG
1 ATATCCGG
155040822 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:155048725 original size:40 final size:40
Alignment explanation
Indices: 155048640--155048790 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
155048630 AATTGAATGA
* * *
155048640 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
155048680 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
155048721 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
155048760 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
155048791 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:155048804 original size:40 final size:40
Alignment explanation
Indices: 155048676--155048806 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
155048666 TATGCTGGAA
* * *
155048676 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
155048716 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
155048756 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
155048796 ATTATATCCGG
1 ATTATATCCGG
155048807 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:155050248 original size:16 final size:16
Alignment explanation
Indices: 155050227--155050266 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
155050217 GACTGAAGAT
155050227 TTCTTTATGTTTTGTA
1 TTCTTTATGTTTTGTA
155050243 TTCTTTATGTTTTGTA
1 TTCTTTATGTTTTGTA
155050259 TTCTTTAT
1 TTCTTTAT
155050267 TCTTCTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.07, G:0.10, T:0.70
Consensus pattern (16 bp):
TTCTTTATGTTTTGTA
Found at i:155053156 original size:32 final size:32
Alignment explanation
Indices: 155053115--155053178 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
155053105 TGTTAAATAT
155053115 CCCAGGGGTATTATAGAAGACGTACTCGTAAA
1 CCCAGGGGTATTATAGAAGACGTACTCGTAAA
* *
155053147 CCCAGGGGTATTATAGAAGATGTACTTGTAAA
1 CCCAGGGGTATTATAGAAGACGTACTCGTAAA
155053179 ATTAGATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (32 bp):
CCCAGGGGTATTATAGAAGACGTACTCGTAAA
Found at i:155057410 original size:31 final size:31
Alignment explanation
Indices: 155057375--155057436 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
155057365 GAAGATGTTT
155057375 AGAAATATTTATTTATTATTTTCTGTTTTTA
1 AGAAATATTTATTTATTATTTTCTGTTTTTA
155057406 AGAAATATTTATTTATTATTTTCTGTTTTTA
1 AGAAATATTTATTTATTATTTTCTGTTTTTA
155057437 CTTATTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.61
Consensus pattern (31 bp):
AGAAATATTTATTTATTATTTTCTGTTTTTA
Found at i:155059271 original size:21 final size:21
Alignment explanation
Indices: 155059233--155059272 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
155059223 AGAGCACCAA
*
155059233 GAGCCAAAAGGAGCCAAAAAC
1 GAGCCAAAAGGAGACAAAAAC
155059254 GAGCCAAAAAGG-GACAAAA
1 GAGCC-AAAAGGAGACAAAA
155059273 CGGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.55, C:0.20, G:0.25, T:0.00
Consensus pattern (21 bp):
GAGCCAAAAGGAGACAAAAAC
Found at i:155069697 original size:23 final size:22
Alignment explanation
Indices: 155069644--155069714 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 22
155069634 TGTTTCTCAC
*
155069644 TTTATATAACTATTATTTTGAAGCTAT
1 TTTATATAA-TATT-TTTT-AA--TAA
*
155069671 TTTATATTATATTGTTTTAATAA
1 TTTATATAATATT-TTTTAATAA
155069694 TTTATATAATATTTTTTAATA
1 TTTATATAATATTTTTTAATA
155069715 TTTTTGTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
22 8 0.20
23 14 0.35
25 2 0.05
26 8 0.20
27 8 0.20
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTATATAATATTTTTTAATAA
Found at i:155076966 original size:41 final size:41
Alignment explanation
Indices: 155076921--155077038 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
155076911 TGAAAGATAA
155076921 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
155076962 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155076992 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155077033 ATGTAG
1 ATGTAG
155077039 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:155076977 original size:71 final size:71
Alignment explanation
Indices: 155076889--155077052 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
155076879 GAGATGTATC
155076889 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155076954 AGGACA
66 AGGACA
155076960 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155077025 AGGACA
66 AGGACA
155077031 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155077053 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:155084536 original size:41 final size:41
Alignment explanation
Indices: 155084491--155084608 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
155084481 TGAAAGATAA
155084491 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
155084532 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155084562 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155084603 ATGTAG
1 ATGTAG
155084609 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:155084547 original size:71 final size:71
Alignment explanation
Indices: 155084459--155084622 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
155084449 GAGATGTATC
155084459 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155084524 AGGACA
66 AGGACA
155084530 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155084595 AGGACA
66 AGGACA
155084601 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155084623 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:155086251 original size:46 final size:44
Alignment explanation
Indices: 155086194--155086368 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 44
155086184 TGTTTGGGCA
155086194 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *** * *
155086240 TCCAAACTCGTTGAGTTGAGTCTGAG-TCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
155086286 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
155086332 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
155086369 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 91 0.87
47 3 0.03
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:155086347 original size:92 final size:92
Alignment explanation
Indices: 155086190--155086358 Score: 275
Period size: 92 Copynumber: 1.8 Consensus size: 92
155086180 AGGATGTTTG
* *
155086190 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAG
*
155086255 TTGAGTCTGAGTCGAGAGATGTAACTA
66 TTGAGTCCGAGTCGAGAGATGTAACTA
* * * *
155086282 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGGCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAG
155086347 TTGAGTCCGAGT
66 TTGAGTCCGAGT
155086359 TCACTTATGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAG
TTGAGTCCGAGTCGAGAGATGTAACTA
Found at i:155089586 original size:40 final size:39
Alignment explanation
Indices: 155089529--155089713 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
155089519 AATTAATGAT
* * *
155089529 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
155089569 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
155089609 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
155089649 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
155089689 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
155089714 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:155089665 original size:80 final size:80
Alignment explanation
Indices: 155089528--155089734 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
155089518 CAATTAATGA
* * ** * *
155089528 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
155089593 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
155089606 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
155089671 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
155089688 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
155089735 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:155089719 original size:40 final size:39
Alignment explanation
Indices: 155089527--155089734 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
155089517 GCAATTAATG
* * ** *
155089527 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
155089567 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
155089607 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
155089647 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
155089687 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
155089727 ATATCCGG
1 ATATCCGG
155089735 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:155097517 original size:40 final size:39
Alignment explanation
Indices: 155097460--155097644 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
155097450 ATTAAATGAT
* * *
155097460 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
155097500 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
155097540 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
155097580 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
155097620 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
155097645 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:155097596 original size:80 final size:80
Alignment explanation
Indices: 155097459--155097665 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
155097449 AATTAAATGA
* * ** * *
155097459 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
155097524 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
155097537 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
155097602 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
155097619 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
155097666 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:155097650 original size:40 final size:39
Alignment explanation
Indices: 155097458--155097665 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
155097448 CAATTAAATG
* * ** *
155097458 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
155097498 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
155097538 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
155097578 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
155097618 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
155097658 ATATCCGG
1 ATATCCGG
155097666 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:155105474 original size:40 final size:39
Alignment explanation
Indices: 155105417--155105601 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
155105407 ATTAAATGAT
* * *
155105417 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
155105457 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
155105497 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
155105537 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
155105577 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
155105602 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:155105553 original size:80 final size:80
Alignment explanation
Indices: 155105416--155105622 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
155105406 AATTAAATGA
* * ** * *
155105416 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
155105481 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
155105494 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
155105559 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
155105576 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
155105623 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:155105607 original size:40 final size:39
Alignment explanation
Indices: 155105415--155105622 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
155105405 CAATTAAATG
* * ** *
155105415 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
155105455 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
155105495 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
155105535 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
155105575 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
155105615 ATATCCGG
1 ATATCCGG
155105623 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:155118351 original size:24 final size:24
Alignment explanation
Indices: 155118281--155118340 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
155118271 CTGTTAGGAG
155118281 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
155118305 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
155118329 AGGATTTAGGAG
1 AGGATTTAGGAG
155118341 CAAATAAGGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:155119811 original size:28 final size:27
Alignment explanation
Indices: 155119771--155119862 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
155119761 AAGCGTCCTT
* * *
155119771 GTGGCTATGCCACAAATTGTTTGATCTG
1 GTGGCTCTGCCACAAA-TATATGATCTG
* *
155119799 GTGGCTCTGCCACATATATATGTTCTG
1 GTGGCTCTGCCACAAATATATGATCTG
* * * *
155119826 GTGGTTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAAATATATG-ATCTG
*
155119854 GTGACTCTG
1 GTGGCTCTG
155119863 TCAGATTATC
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 25 0.50
28 25 0.50
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATATGATCTG
Found at i:155119834 original size:27 final size:28
Alignment explanation
Indices: 155119794--155119880 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 28
155119784 AAATTGTTTG
155119794 ATCTGGTGGCTCTGCCAC-ATATATATGT
1 ATCTGGTGGCTCTGCCACGAT-TATATGT
* *
155119822 -TCTGGTGGTTCTGCCACGATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATATGT
* * *
155119849 ATCTGGTGACTCTGTCA-GATTATCTGT
1 ATCTGGTGGCTCTGCCACGATTATATGT
155119876 -TCTGG
1 ATCTGG
155119881 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 5 0.10
27 32 0.62
28 15 0.29
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.39
Consensus pattern (28 bp):
ATCTGGTGGCTCTGCCACGATTATATGT
Found at i:155124518 original size:40 final size:40
Alignment explanation
Indices: 155124418--155124608 Score: 238
Period size: 40 Copynumber: 4.8 Consensus size: 40
155124408 CGAATGGTAT
* * * * * *
155124418 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
155124459 CCGGGTCAATTCCCAAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
155124499 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
155124539 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
155124579 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
155124609 ATCACTATAA
Statistics
Matches: 131, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 108 0.82
41 23 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:155124621 original size:80 final size:79
Alignment explanation
Indices: 155124416--155124634 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 79
155124406 TTCGAATGGT
* * * * *
155124416 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTTAAGTCCCAAAGGCAT
*
155124481 TTGTGCGAGTTACCAA
64 TCGTGCGAGTTACCAA
* * * * * *
155124497 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTTAAGTCCCAAAGGCATT
*
155124562 CGTGCGAGTTACTAA
65 CGTGCGAGTTACCAA
* * * *
155124577 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTTAAGTCCCAA
155124635 GACAATTGAG
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
79 2 0.02
80 80 0.70
81 32 0.28
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTTAAGTCCCAAAGGCATTC
GTGCGAGTTACCAA
Found at i:155124623 original size:40 final size:39
Alignment explanation
Indices: 155124418--155124649 Score: 209
Period size: 40 Copynumber: 5.8 Consensus size: 39
155124408 CGAATGGTAT
** * *
155124418 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * * *
155124458 TCCGGG-TCAATTCCCAAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
155124499 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
155124539 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
155124578 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
155124619 CCGGGCTATGTCCC-AAGACAATTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
155124650 CGCTATATCC
Statistics
Matches: 165, Mismatches: 19, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
39 20 0.12
40 112 0.68
41 33 0.20
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:155124632 original size:120 final size:120
Alignment explanation
Indices: 155124418--155124649 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
155124408 CGAATGGTAT
* * *
155124418 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCAATT
* * * * * *
155124483 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCC-AAGACAATTGAGCGAGTTACCAAAA
* * * *
155124539 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCAAAGGCAAT
* * *
155124602 TGTGCGAATCACTATAACCGGGCTATGTCCCAAGACAATTGAGCGAGT
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCAAGACAATTGAGCGAGT
155124650 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 15 0.16
120 54 0.57
121 25 0.27
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCAAGACAATTGAGCGAGTTACCAAAA
Found at i:155124656 original size:39 final size:40
Alignment explanation
Indices: 155124579--155124661 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 40
155124569 GTTACTAAAT
* *
155124579 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATTGAGCGAATCACTATAA
* * *
155124619 CCGGGCT-ATGTCCC-AAGACAATTGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATTGAGCGAATCACTATAA
155124658 CCGG
1 CCGG
155124662 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 26 0.70
40 11 0.30
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATTGAGCGAATCACTATAA
Found at i:155132691 original size:39 final size:40
Alignment explanation
Indices: 155132504--155132722 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
155132494 TTCGAATGGT
* * *
155132504 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
155132545 ATCCGGG-TCAA-TCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
155132584 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
*
155132625 AT-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
155132664 ATCCGGGCTAATTCCCGAAGGCA-TTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
155132704 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
155132723 ACAATCGAGT
Statistics
Matches: 158, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
39 49 0.31
40 96 0.61
41 13 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:155141805 original size:40 final size:40
Alignment explanation
Indices: 155141760--155141962 Score: 203
Period size: 40 Copynumber: 5.1 Consensus size: 40
155141750 CGGAATACAA
* *
155141760 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACCACTTGCACGAATGCCTTCGGGTCTTAGC
** * * * *
155141800 CCGGATAGAGCGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATTTAACCACTTGCACGAATGCCTTCGGGTCTTAGC
*
155141840 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACCACTTGCACGAATGCCTTCGGGTCTTAGC
** * * *
155141880 CCGGATTTAGTCACTAGCA-TAATTGCCTTCGGGTCTTAAC
1 CCGGATTTAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
* * ** *
155141920 CCGGATTTAACTACTAGCATAAATGTCC-TCGGGACTTAGC
1 CCGGATTTAACCACTTGCACGAATG-CCTTCGGGTCTTAGC
155141960 CCG
1 CCG
155141963 AATATCATTT
Statistics
Matches: 136, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.01
40 130 0.96
41 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATTTAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:155141907 original size:80 final size:80
Alignment explanation
Indices: 155141760--155141962 Score: 239
Period size: 80 Copynumber: 2.5 Consensus size: 80
155141750 CGGAATACAA
* * * *
155141760 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTTGCACAAATG
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTAGCACAAATG
*
155141825 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** * *
155141840 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAGTC-ACTAGCATAATT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAG-CGACTAGCACAAAT
*
155141904 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* * ** *
155141920 CCGGATTTAACTACTAGCATAAATGTCC-TCGGGACTTAGCCCG
1 CCGGATTTAACAACTTGCACGAATG-CCTTCGGGTCTTAGCCCG
155141963 AATATCATTT
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 103 0.97
81 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAGCGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:155155928 original size:26 final size:26
Alignment explanation
Indices: 155155899--155155983 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 26
155155889 GTGGGAACAC
155155899 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* **
155155925 ATGTGTTTAAG-ACGAT-TTTAGG-TCAC-
1 ATGTG--T-AGTACTATGTGCAGGCT-ACT
155155951 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
155155977 ATGTGTA
1 ATGTGTA
155155984 CCAGATTGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
23 2 0.04
24 5 0.11
25 6 0.13
26 19 0.42
27 6 0.13
28 5 0.11
29 2 0.04
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:155156019 original size:50 final size:50
Alignment explanation
Indices: 155155896--155156177 Score: 323
Period size: 50 Copynumber: 5.6 Consensus size: 50
155155886 ATTGTGGGAA
* **
155155896 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
*
155155948 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * ** * * * *
155155998 CGCATGTGTAGTACTAAGTGCAGGCTTCTTTGCATACCCGATAGCTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
** * *
155156049 CATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * *
155156099 CACGTGTGTAGTCCTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
155156149 CACACGTGTAATACTAAGTGCAGGCTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACT
155156178 GTGAATACTA
Statistics
Matches: 195, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 4 0.02
50 119 0.61
51 38 0.19
52 34 0.17
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:155156172 original size:151 final size:152
Alignment explanation
Indices: 155155900--155156174 Score: 426
Period size: 151 Copynumber: 1.8 Consensus size: 152
155155890 TGGGAACACA
* * * *
155155900 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGATTTTAGGTCACATGTGTAGTACTAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACGA-GTTAGGTCACATGTGTAGTACTAA
* * * *
155155965 GTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTTCTTTG
65 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACACGTGTAATACTAAGTGCAGGCTTCTTTG
155156030 CATACCCGATAGCTTTGATCATG
130 CATACCCGATAGCTTTGATCATG
* * * *
155156053 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATG-GTTAGGTCACGTGTGTAGTCCTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACGAGTTAGGTCACATGTGTAGTACTAAG
155156117 TGCAGGCTACTACGTGTACCAGATTGTTAGGTCACACGTGTAATACTAAGTGCAGGCT
66 TGCAGGCTACTACGTGTACCAGATTGTTAGGTCACACGTGTAATACTAAGTGCAGGCT
155156175 ACTGTGAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
151 75 0.68
153 35 0.32
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATAAGACGAGTTAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATTGTTAGGTCACACGTGTAATACTAAGTGCAGGCTTCTTTGC
ATACCCGATAGCTTTGATCATG
Found at i:155156410 original size:16 final size:15
Alignment explanation
Indices: 155156389--155156418 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
155156379 GAATGGAGTT
155156389 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
155156405 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
155156419 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:155160258 original size:27 final size:27
Alignment explanation
Indices: 155160219--155160376 Score: 174
Period size: 27 Copynumber: 5.9 Consensus size: 27
155160209 TCAAATTGAT
*
155160219 AAATGACTATTTTTCCCTTATGTGGTA
1 AAATGACTGTTTTTCCCTTATGTGGTA
* * *
155160246 AAATTATTGTTTTTCCTTTATGTGGTA
1 AAATGACTGTTTTTCCCTTATGTGGTA
* * *
155160273 AAATGACTATTTTGCCCTTATGTGGTG
1 AAATGACTGTTTTTCCCTTATGTGGTA
*
155160300 AAATGACTGTTTTTCCTTTATGTGGTA
1 AAATGACTGTTTTTCCCTTATGTGGTA
* ** *
155160327 AAATGACTATTTTGACCTTATATGGTA
1 AAATGACTGTTTTTCCCTTATGTGGTA
* * *
155160354 AGATGATTGTTTTACCC-TATGTG
1 AAATGACTGTTTTTCCCTTATGTG
155160377 ATGTATACAT
Statistics
Matches: 106, Mismatches: 25, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
26 5 0.05
27 101 0.95
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (27 bp):
AAATGACTGTTTTTCCCTTATGTGGTA
Found at i:155160278 original size:54 final size:54
Alignment explanation
Indices: 155160219--155160366 Score: 233
Period size: 54 Copynumber: 2.7 Consensus size: 54
155160209 TCAAATTGAT
* *
155160219 AAATGACTATTTTTCCCTTATGTGGTAAAATTATTGTTTTTCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTTCCTTTATGTGGTA
* *
155160273 AAATGACTATTTTGCCCTTATGTGGTGAAATGACTGTTTTTCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTTCCTTTATGTGGTA
* * *
155160327 AAATGACTATTTTGACCTTATATGGTAAGATGATTGTTTT
1 AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTT
155160367 ACCCTATGTG
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.47
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTTCCTTTATGTGGTA
Found at i:155160354 original size:81 final size:80
Alignment explanation
Indices: 155160219--155160376 Score: 192
Period size: 81 Copynumber: 2.0 Consensus size: 80
155160209 TCAAATTGAT
* * * * *
155160219 AAATGACTATTTTTCCCTTATGTGGTAAAATTATTGTTTTTCCTTTATGTGGTAAAATGACTATT
1 AAATGACTATTTTTCCCTTATGTGGTAAAATGACTATTTTACCTTTATATGGTAAAATGACTATT
*
155160284 TTGCCCTTATGTGGTG
66 TTACCC-TATGTGGTG
* * * * *
155160300 AAATGACTGTTTTTCCTTTATGTGGTAAAATGACTATTTTGACC-TTATATGGTAAGATGATTGT
1 AAATGACTATTTTTCCCTTATGTGGTAAAATGACTATTTT-ACCTTTATATGGTAAAATGACTAT
155160364 TTTACCCTATGTG
65 TTTACCCTATGTG
155160377 ATGTATACAT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
80 6 0.09
81 57 0.88
82 2 0.03
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (80 bp):
AAATGACTATTTTTCCCTTATGTGGTAAAATGACTATTTTACCTTTATATGGTAAAATGACTATT
TTACCCTATGTGGTG
Found at i:155170964 original size:30 final size:30
Alignment explanation
Indices: 155170930--155170997 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
155170920 CCCTAATACG
155170930 AACTTTCAAAAAATTAC-CATTTTGCCCCTA
1 AACTTTCAAAAAATTACAC-TTTTGCCCCTA
* * *
155170960 AACTTTCACATATTTACACTTTTGCCCCTA
1 AACTTTCAAAAAATTACACTTTTGCCCCTA
155170990 AACTTTCA
1 AACTTTCA
155170998 CATATTTACA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 33 0.97
31 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTCAAAAAATTACACTTTTGCCCCTA
Found at i:155170998 original size:30 final size:30
Alignment explanation
Indices: 155170949--155171010 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
155170939 AAAATTACCA
155170949 TTTTGCCCCTAAACTTTCACATATTTACAC
1 TTTTGCCCCTAAACTTTCACATATTTACAC
155170979 TTTTGCCCCTAAACTTTCACATATTTACAC
1 TTTTGCCCCTAAACTTTCACATATTTACAC
155171009 TT
1 TT
155171011 ATTCCCTAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (30 bp):
TTTTGCCCCTAAACTTTCACATATTTACAC
Found at i:155173198 original size:53 final size:52
Alignment explanation
Indices: 155173076--155173228 Score: 189
Period size: 53 Copynumber: 2.8 Consensus size: 52
155173066 CCCAAATTGG
* * *
155173076 AAAATGACTATTTTGTCGTTATGTGGTAAAATGATTGTTTTTCCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT-AAATGACTG-TTTTCCCTTATATGGT
*
155173130 AAAATGACTATTTTGCCCTTATGTGGTGAAATGACTGTTTTGCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT-AAATGACTGTTTTCCCTTATATGGT
* * * *
155173183 AAAATTACTACTTTGCCCTTATATGGTAAGATGACTATTTTTCCCT
1 AAAATGACTATTTTGCCCTTATGTGGTAA-ATGACT-GTTTTCCCT
155173229 ATGTGATGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 2 0.02
53 45 0.52
54 40 0.46
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (52 bp):
AAAATGACTATTTTGCCCTTATGTGGTAAATGACTGTTTTCCCTTATATGGT
Found at i:155173202 original size:80 final size:80
Alignment explanation
Indices: 155173077--155173233 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 80
155173067 CCAAATTGGA
* * * ** *
155173077 AAATGACTATTTTGTCGTTATGTGGTAAAATGATTGTTTTTCCCTTATATGGTAAAATGACTATT
1 AAATGACTATTTTGTCCTTATATGGTAAAATGACTACTTTGCCCTTATATGGTAAAATGACTATT
155173142 TTGCCCTTATGTGGTG
66 TTGCCC-TATGTGGTG
* * *
155173158 AAATGACTGTTTTG-CCTTATATGGTAAAATTACTACTTTGCCCTTATATGGTAAGATGACTATT
1 AAATGACTATTTTGTCCTTATATGGTAAAATGACTACTTTGCCCTTATATGGTAAAATGACTATT
*
155173222 TTTCCCTATGTG
66 TTGCCCTATGTG
155173234 ATGTATACAT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
79 6 0.09
80 47 0.71
81 13 0.20
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (80 bp):
AAATGACTATTTTGTCCTTATATGGTAAAATGACTACTTTGCCCTTATATGGTAAAATGACTATT
TTGCCCTATGTGGTG
Found at i:155173228 original size:27 final size:27
Alignment explanation
Indices: 155173076--155173228 Score: 166
Period size: 27 Copynumber: 5.7 Consensus size: 27
155173066 CCCAAATTGG
* *
155173076 AAAATGACTATTTTGT-CGTTATGTGGT
1 AAAATGACTATTTT-TCCCTTATATGGT
* *
155173103 AAAATGATTGTTTTTCCCTTATATGGT
1 AAAATGACTATTTTTCCCTTATATGGT
* *
155173130 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTTCCCTTATATGGT
* * *
155173157 GAAATGACT-GTTTTGCCTTATATGGT
1 AAAATGACTATTTTTCCCTTATATGGT
* * *
155173183 AAAATTACTACTTTGCCCTTATATGGT
1 AAAATGACTATTTTTCCCTTATATGGT
*
155173210 AAGATGACTATTTTTCCCT
1 AAAATGACTATTTTTCCCT
155173229 ATGTGATGTA
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 21 0.21
27 81 0.79
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (27 bp):
AAAATGACTATTTTTCCCTTATATGGT
Found at i:155173571 original size:18 final size:18
Alignment explanation
Indices: 155173548--155173594 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
155173538 AGGACTTGTA
*
155173548 TACTGTTACTGCACTGAT
1 TACTGTTACTGAACTGAT
*
155173566 TACTGTTTCTGAACTGAT
1 TACTGTTACTGAACTGAT
*
155173584 TATTGTTACTG
1 TACTGTTACTG
155173595 TAATGGGCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (18 bp):
TACTGTTACTGAACTGAT
Found at i:155177293 original size:29 final size:29
Alignment explanation
Indices: 155177260--155177324 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
155177250 GTGACGAGAT
*
155177260 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
155177289 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
155177318 CGGCACT
1 TGGCACT
155177325 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:155178202 original size:18 final size:16
Alignment explanation
Indices: 155178179--155178213 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
155178169 AAATCACTAA
155178179 AAATAGTAGAGTAGAATT
1 AAATAGT-GAGTA-AATT
155178197 AAATAGTGAGTAAATT
1 AAATAGTGAGTAAATT
155178213 A
1 A
155178214 TGAAATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (16 bp):
AAATAGTGAGTAAATT
Found at i:155187436 original size:41 final size:41
Alignment explanation
Indices: 155187375--155187459 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
155187365 TAGATATAGT
155187375 TGGCATGTCATAGGACTGTGAGTACTCACTTTTCTATTTTG
1 TGGCATGTCATAGGACTGTGAGTACTCACTTTTCTATTTTG
*
155187416 TGGCATGTCATAGGATTGTGAGTACTCACTTTTCTATTTTG
1 TGGCATGTCATAGGACTGTGAGTACTCACTTTTCTATTTTG
155187457 TGG
1 TGG
155187460 TTTGGGCATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (41 bp):
TGGCATGTCATAGGACTGTGAGTACTCACTTTTCTATTTTG
Found at i:155194236 original size:6 final size:6
Alignment explanation
Indices: 155194215--155194273 Score: 104
Period size: 6 Copynumber: 10.2 Consensus size: 6
155194205 CTAATTTAAT
155194215 AAAAT- AAAAT- AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
155194261 AAAATA AAAATA A
1 AAAATA AAAATA A
155194274 TATCTTCCTA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 10 0.19
6 43 0.81
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:155196678 original size:29 final size:29
Alignment explanation
Indices: 155196643--155196835 Score: 305
Period size: 29 Copynumber: 6.7 Consensus size: 29
155196633 ATAAACGATC
*** *
155196643 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
155196672 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
155196701 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
155196730 TCGCACACCTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
155196759 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
155196788 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
155196817 TTGCACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
155196836 CCTTCCAAGC
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 153 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:155196746 original size:87 final size:87
Alignment explanation
Indices: 155196643--155196862 Score: 325
Period size: 87 Copynumber: 2.5 Consensus size: 87
155196633 ATAAACGATC
* *
155196643 TCGCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
155196708 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * *
155196730 TCGCACACCTAGTGCCATATAATTTAAGTTCGCACACTTAGTGCCATATAATTTAAGTTTGCACA
1 TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
155196795 CTTAGTGCCATATAATTTAAGT
66 CTTAGTGCCATATAATTTAAGT
* * * * *
155196817 TTGCACACTTAGTGCCATAC-CTTCCAAGCCCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATACAATT-TAAGCTCGCACACATAGTGCCA
155196863 ATCTTGTCAC
Statistics
Matches: 119, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 2 0.02
87 117 0.98
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (87 bp):
TCGCACACTTAGTGCCATACAATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTTGCACA
CTTAGTGCCATATAATTTAAGT
Found at i:155196852 original size:58 final size:58
Alignment explanation
Indices: 155196645--155196862 Score: 303
Period size: 58 Copynumber: 3.8 Consensus size: 58
155196635 AAACGATCTC
*** *
155196645 GCACACTTAGTGCCATGCGATTTAAGCTCGCACACATAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
* * *
155196703 GCACACTTAGTGCCATATAATTTAAGTTCGCACACCTAGTGCCATATAATTTAAGTTC
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
* *
155196761 GCACACTTAGTGCCATATAATTTAAGTTTGCACACTTAGTGCCATATAATTTAAGTTT
1 GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
** * *
155196819 GCACACTTAGTGCCATA-CCTTCCAAGCCCGCACACTTAGTGCCA
1 GCACACTTAGTGCCATATAATT-TAAGCTCGCACACTTAGTGCCA
155196863 ATCTTGTCAC
Statistics
Matches: 144, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
57 2 0.01
58 142 0.99
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (58 bp):
GCACACTTAGTGCCATATAATTTAAGCTCGCACACTTAGTGCCATATAATTTAAGTTT
Found at i:155206120 original size:17 final size:17
Alignment explanation
Indices: 155206098--155206131 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
155206088 AACCACCAAA
155206098 TATAATTCCTACAAAAT
1 TATAATTCCTACAAAAT
155206115 TATAATTCCTACAAAAT
1 TATAATTCCTACAAAAT
155206132 AACTCTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
TATAATTCCTACAAAAT
Found at i:155209164 original size:18 final size:18
Alignment explanation
Indices: 155209141--155209176 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
155209131 GATTTCTGGA
155209141 AAATGATTTACTTTTCTG
1 AAATGATTTACTTTTCTG
155209159 AAATGATTTACTTTTCTG
1 AAATGATTTACTTTTCTG
155209177 GTGTTTGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
AAATGATTTACTTTTCTG
Found at i:155209288 original size:23 final size:24
Alignment explanation
Indices: 155209244--155209296 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
155209234 ATTTTCCGAA
*
155209244 AAATTTGTTTTTACATATATTAAT
1 AAATTTGTTTATACATATATTAAT
*
155209268 AAATTT-TTTATATATATATTAAT
1 AAATTTGTTTATACATATATTAAT
155209291 AAATTT
1 AAATTT
155209297 ATATTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 21 0.78
24 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
AAATTTGTTTATACATATATTAAT
Found at i:155209765 original size:13 final size:12
Alignment explanation
Indices: 155209737--155209766 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
155209727 TAGTTATGTT
155209737 AAAAATGCCTAC
1 AAAAATGCCTAC
*
155209749 AAAAATTCCTAC
1 AAAAATGCCTAC
155209761 AAAAAT
1 AAAAAT
155209767 CAACTCAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.20, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAAATGCCTAC
Found at i:155212705 original size:208 final size:205
Alignment explanation
Indices: 155212317--155212732 Score: 769
Period size: 208 Copynumber: 2.0 Consensus size: 205
155212307 TTTAAATAAA
155212317 ATACGATGGAAAATAAAATAAAAGTAAAATCCATATAGAACTAGACTTCTTTTATTTTATTTTAG
1 ATACGATGGAAAATAAAATAAAAGTAAAATCCATATAGAACTAGACTTCTTTTATTTTATTTTAG
155212382 AATAAGGTTTTTAAACCTTATTAAAACATCTATTTTATATTGATTAGGATAAGGTGTTTCAATCC
66 AATAAGGTTTTTAAACCTTATTAAAACATCTATTTTATATTGATTAGGATAAGGTGTTTCAATCC
155212447 TACTAGAATATGGCTTTGCAAGCCTATAAATAGACATAGTCTATTCCTCTTGTATTTGAAAAAAA
131 TACTAGAATATGGCTTTGCAAGCCTATAAATAGACATAGTCTATTCCTCTTGTATTTG-AAAAAA
*
155212512 AATTTTTTGAC
195 AATTTTTCGAC
155212523 ATACGATGGAAAATAAAATAAAAGTAAAATCCATATAGAACTAGACTTCTTTTATTTTATTTTAG
1 ATACGATGGAAAATAAAATAAAAGTAAAATCCATATAGAACTAGACTTCTTTTATTTTATTTTAG
*
155212588 AATAAGGTTTTTAAACCTTATTAAACTCCATCTATTTTATATTGATTAGGATAAGGTGTTTCAAT
66 AATAAGGTTTTTAAACCTTATTAAA--ACATCTATTTTATATTGATTAGGATAAGGTGTTTCAAT
**
155212653 CCTACTAGAATATGGCTTTGCAAGCCTATAAATAGACATAGTCTATTCCTCTTGTATTTGAGTAA
129 CCTACTAGAATATGGCTTTGCAAGCCTATAAATAGACATAGTCTATTCCTCTTGTATTTGAAAAA
155212718 AAATTTTTCGAC
194 AAATTTTTCGAC
155212730 ATA
1 ATA
155212733 GTGAATTTTC
Statistics
Matches: 204, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
206 90 0.44
207 17 0.08
208 97 0.48
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (205 bp):
ATACGATGGAAAATAAAATAAAAGTAAAATCCATATAGAACTAGACTTCTTTTATTTTATTTTAG
AATAAGGTTTTTAAACCTTATTAAAACATCTATTTTATATTGATTAGGATAAGGTGTTTCAATCC
TACTAGAATATGGCTTTGCAAGCCTATAAATAGACATAGTCTATTCCTCTTGTATTTGAAAAAAA
ATTTTTCGAC
Found at i:155219364 original size:89 final size:89
Alignment explanation
Indices: 155219213--155219390 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
155219203 TAGTAAGTTT
155219213 TGAGCCATGAAATTAGACACAACTAAAGTATAGCATTCATATGGCTAAACGGATAATTTCATATG
1 TGAGCCATGAAATTAGACACAACTAAAGTATAGCATTCATATGGCTAAACGGATAATTTCATATG
155219278 CACAAATTCTCAATATCATACTTA
66 CACAAATTCTCAATATCATACTTA
155219302 TGAGCCATGAAATTAGACACAACTAAAGTATAGCATTCATATGGCTAAACGGATAATTTCATATG
1 TGAGCCATGAAATTAGACACAACTAAAGTATAGCATTCATATGGCTAAACGGATAATTTCATATG
155219367 CACAAATTCTCAATATCATACTTA
66 CACAAATTCTCAATATCATACTTA
155219391 CTTCACATTA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (89 bp):
TGAGCCATGAAATTAGACACAACTAAAGTATAGCATTCATATGGCTAAACGGATAATTTCATATG
CACAAATTCTCAATATCATACTTA
Found at i:155219689 original size:40 final size:40
Alignment explanation
Indices: 155219591--155219847 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
155219581 AAGCCAAGTA
* * *
155219591 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
155219629 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
155219669 CCTTCGGGACTTAGCTCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
155219709 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
155219749 CCTTCAGGACTTAGCCCAGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
155219789 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
155219829 CCTTCCGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
155219848 TTATCATCTG
Statistics
Matches: 193, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 164 0.85
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:155234345 original size:40 final size:40
Alignment explanation
Indices: 155234286--155234493 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
155234276 CAATTGAATG
* * * *
155234286 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
155234326 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
155234366 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
155234406 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
155234446 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
155234486 ATATCCGG
1 ATATCCGG
155234494 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:155234424 original size:80 final size:80
Alignment explanation
Indices: 155234287--155234493 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
155234277 AATTGAATGA
* * ** * * *
155234287 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
155234352 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
155234365 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
155234430 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
155234447 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
155234494 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:155242494 original size:40 final size:40
Alignment explanation
Indices: 155242435--155242642 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
155242425 CAATTGAATG
* * * *
155242435 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
155242475 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
155242515 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
155242555 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
155242595 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
155242635 ATATCCGG
1 ATATCCGG
155242643 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:155242573 original size:80 final size:80
Alignment explanation
Indices: 155242436--155242642 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
155242426 AATTGAATGA
* * ** * * *
155242436 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
155242501 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
155242514 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
155242579 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
155242596 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
155242643 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:155254019 original size:39 final size:39
Alignment explanation
Indices: 155253967--155254126 Score: 266
Period size: 39 Copynumber: 4.1 Consensus size: 39
155253957 AATTATATTA
* * *
155253967 CCAGCACAAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
155254006 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
155254045 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
* *
155254084 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
155254123 CCAG
1 CCAG
155254127 TATCTTGCAT
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:155256983 original size:28 final size:28
Alignment explanation
Indices: 155256940--155257160 Score: 181
Period size: 28 Copynumber: 7.8 Consensus size: 28
155256930 TGCCCCAACA
* * *
155256940 ACCGATCTTGCACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
* * ***
155256968 ACAGAACTCGCACACACCGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCAGTT
* **
155256997 ACCGATCTCGCACACACAGTGCTTGGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
* ***
155257025 ACAGAACTCGCACACACAGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCAGTT
* *
155257054 ACCGATCTCGAACACACAGTGCTCAGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
** * ***
155257082 ATGGAACTCACACACACAGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCAGTT
* *
155257111 ACCGATCTCGCACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCAGTT
*
155257139 ACGGAACTCGCACACACAGTGC
1 ACCGAACTCGCACACACAGTGC
155257161 CTATGTTCAC
Statistics
Matches: 143, Mismatches: 47, Indels: 6
0.73 0.24 0.03
Matches are distributed among these distances:
28 81 0.57
29 62 0.43
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.17
Consensus pattern (28 bp):
ACCGAACTCGCACACACAGTGCTCAGTT
Found at i:155257010 original size:57 final size:57
Alignment explanation
Indices: 155256919--155257162 Score: 380
Period size: 57 Copynumber: 4.2 Consensus size: 57
155256909 GATCTCATTT
* *
155256919 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTCGGTTACAGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
* *
155256978 CACACACCGTGCCTCAACAACCGATCTCGCACACACAGTGCTTGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
* * ** *
155257035 CACACACAGTGCCTCAACAACCGATCTCGAACACACAGTGCTCAGTTATGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
*
155257092 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
155257149 CACACACAGTGCCT
1 CACACACAGTGCCT
155257163 ATGTTCACTT
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
57 163 0.96
59 7 0.04
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCG
Found at i:155257012 original size:29 final size:29
Alignment explanation
Indices: 155256919--155257132 Score: 173
Period size: 29 Copynumber: 7.4 Consensus size: 29
155256909 GATCTCATTT
* *
155256919 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
**** * *
155256950 CACACACAGTG-CTCGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
155256978 CACACACCGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
***** * *
155257007 CACACACAGTG-CTTGGTTACAGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
155257035 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
* *** ** * *
155257064 AACACACAGTG-CTCAGTTATGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTCG
155257092 CACACACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
155257121 CACACACAGTGC
1 CACACACAGTGC
155257133 TCGGTTACGG
Statistics
Matches: 134, Mismatches: 46, Indels: 8
0.71 0.24 0.04
Matches are distributed among these distances:
28 60 0.45
29 67 0.50
31 7 0.05
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:155259200 original size:22 final size:22
Alignment explanation
Indices: 155259172--155259215 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
155259162 CGAACGTATC
155259172 ACGATCACATTTATAGTCATAA
1 ACGATCACATTTATAGTCATAA
155259194 ACGATCACATTTATAGTCATAA
1 ACGATCACATTTATAGTCATAA
155259216 CACTTATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (22 bp):
ACGATCACATTTATAGTCATAA
Found at i:155259470 original size:39 final size:39
Alignment explanation
Indices: 155259418--155259577 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
155259408 AATTATATTA
* * *
155259418 CCAGCACAAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
155259457 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
155259496 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
155259535 CCAGCATGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
155259574 CCAG
1 CCAG
155259578 TATGTTGCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:155261681 original size:31 final size:31
Alignment explanation
Indices: 155261643--155261706 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
155261633 CCTTTTCATA
155261643 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
155261674 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
155261705 TT
1 TT
155261707 ACTATAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:155261970 original size:47 final size:46
Alignment explanation
Indices: 155261898--155262054 Score: 217
Period size: 47 Copynumber: 3.3 Consensus size: 46
155261888 GCTTTATCGT
* *
155261898 ATAACTGGAGGCCT-AGCCTCTTTAATAACTGGGGCAAAAGCCCTTGTA
1 ATAACTGG-GGCATAAGCC-CTTTAATAACTGGGGCATAAGCCCTT-TA
*
155261946 ACAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTA
*
155261992 ATAACTGGGGCATAAGCCCTTTTAATAACTGGAGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC-TTTA
*
155262040 ATAACCGGGGCATAA
1 ATAACTGGGGCATAA
155262055 TGTAACACCC
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
46 20 0.20
47 51 0.51
48 29 0.29
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (46 bp):
ATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:155261978 original size:23 final size:23
Alignment explanation
Indices: 155261898--155262054 Score: 217
Period size: 24 Copynumber: 6.7 Consensus size: 23
155261888 GCTTTATCGT
*
155261898 ATAACTGGAGGCCT-AGCCTCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTA
*
155261922 ATAACTGGGGCAAAAGCCCTTGTA
1 ATAACTGGGGCATAAGCCCTT-TA
*
155261946 ACAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
155261969 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
155261992 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
*
155262016 ATAACTGGAGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
*
155262040 ATAACCGGGGCATAA
1 ATAACTGGGGCATAA
155262055 TGTAACACCC
Statistics
Matches: 122, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
23 49 0.40
24 73 0.60
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:155265877 original size:20 final size:20
Alignment explanation
Indices: 155265852--155265898 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
155265842 TTATGAATAC
*
155265852 ATCATGTGCATATCATACAT
1 ATCATGTGCATAGCATACAT
155265872 ATCATGTGCATAGCATACAT
1 ATCATGTGCATAGCATACAT
*
155265892 ACCATGT
1 ATCATGT
155265899 TTACTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (20 bp):
ATCATGTGCATAGCATACAT
Found at i:155270273 original size:40 final size:40
Alignment explanation
Indices: 155270216--155270379 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
155270206 TGAATAATAC
* *
155270216 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
155270256 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
155270296 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
155270336 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
155270376 CCGG
1 CCGG
155270380 TTAAATTCCA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:155270373 original size:80 final size:80
Alignment explanation
Indices: 155270212--155270379 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
155270202 CATTTGAATA
* * ** * *
155270212 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCTGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
*
155270277 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTGGTT
* * * *
155270292 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-
**
155270357 ATT-GTGCTTGTGGTT
65 ATTCGTGCGAGTGGTT
155270372 ATACCCGG
1 ATACCCGG
155270380 TTAAATTCCA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 70 0.96
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTGGTT
Found at i:155274505 original size:29 final size:29
Alignment explanation
Indices: 155274472--155274603 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
155274462 CCTCCGAACT
** * * *
155274472 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
155274501 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
155274530 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
155274559 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
155274588 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
155274604 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:155287798 original size:40 final size:40
Alignment explanation
Indices: 155287753--155287920 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
155287743 CGGAATATAA
155287753 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
155287793 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
155287833 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
155287873 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
155287913 CCGGATAT
1 CCGGATAT
155287921 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:155287903 original size:80 final size:80
Alignment explanation
Indices: 155287769--155287918 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
155287759 ATAATCACGT
*
155287769 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
155287833 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
155287849 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
155287912 CCCGGAT
64 CCCGGAT
155287919 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:155295464 original size:29 final size:28
Alignment explanation
Indices: 155295430--155295532 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
155295420 TACTCAATCA
*
155295430 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
155295459 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
155295488 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
155295517 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
155295533 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:155298914 original size:40 final size:40
Alignment explanation
Indices: 155298869--155299036 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
155298859 CGGAATATAA
155298869 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
155298909 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
155298949 CCGAATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
155298989 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
155299029 CCGGATAT
1 CCGGATAT
155299037 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:155299529 original size:38 final size:38
Alignment explanation
Indices: 155299469--155299571 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 38
155299459 GAAGGCCCGA
** * * * *
155299469 ATATAATACCAGTGCTAGGCCTGTGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
**
155299507 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
** *
155299545 ATATTTTACTAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
155299572 TCTTTAAGCC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:155300554 original size:2 final size:2
Alignment explanation
Indices: 155300542--155300574 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
155300532 CACTTTCAAA
155300542 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155300575 TCAACTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:155315021 original size:40 final size:40
Alignment explanation
Indices: 155314947--155315022 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
155314937 TAAAAACTTT
*
155314947 TTATTTATTATTTTTAATTTCACTTTTATCTTTATTTATC
1 TTATTTAGTATTTTTAATTTCACTTTTATCTTTATTTATC
*
155314987 TTATTTAAGTATTTTTTATTTCA-TTTT-TCATTTATT
1 TTATTT-AGTATTTTTAATTTCACTTTTATC-TTTATT
155315023 ATTATTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
39 2 0.06
40 16 0.50
41 14 0.44
ACGTcount: A:0.22, C:0.08, G:0.01, T:0.68
Consensus pattern (40 bp):
TTATTTAGTATTTTTAATTTCACTTTTATCTTTATTTATC
Found at i:155322388 original size:38 final size:40
Alignment explanation
Indices: 155322334--155322500 Score: 194
Period size: 46 Copynumber: 3.9 Consensus size: 40
155322324 TCTGATATGA
155322334 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
155322374 -A-GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
155322417 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 -AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
155322458 ATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 A-ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
155322501 ATGACAGAAA
Statistics
Matches: 111, Mismatches: 2, Indels: 22
0.82 0.01 0.16
Matches are distributed among these distances:
38 35 0.32
39 1 0.01
40 1 0.01
41 5 0.05
43 2 0.02
44 2 0.02
45 1 0.01
46 64 0.58
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (40 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:155322442 original size:46 final size:46
Alignment explanation
Indices: 155322377--155322549 Score: 240
Period size: 46 Copynumber: 3.8 Consensus size: 46
155322367 CAACCTGAGT
* *
155322377 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
*
155322423 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
** *
155322469 ACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGA
* * * *
155322515 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
155322550 TCAAAGATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 113 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
Found at i:155327626 original size:37 final size:39
Alignment explanation
Indices: 155327576--155327742 Score: 160
Period size: 46 Copynumber: 4.0 Consensus size: 39
155327566 GATATGAAAT
155327576 GTGTAAGACCATGGTTGAAAGATACCATGGCAACC-TG-
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCATGA
155327613 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG--A
*
155327658 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAA
1 -GTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CATG-A
* *
155327703 ATGAACAAGACCATGGTTGAAAGATACCATGGCAA-CATGA
1 GTG--TAAGACCATGGTTGAAAGATACCATGGCAACCATGA
155327743 CAGAAAATGA
Statistics
Matches: 111, Mismatches: 4, Indels: 27
0.78 0.03 0.19
Matches are distributed among these distances:
37 35 0.32
40 1 0.01
41 3 0.03
42 2 0.02
44 2 0.02
45 2 0.02
46 66 0.59
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (39 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCATGA
Found at i:155327680 original size:46 final size:46
Alignment explanation
Indices: 155327615--155327787 Score: 240
Period size: 46 Copynumber: 3.8 Consensus size: 46
155327605 GCAACCTGGT
* *
155327615 GTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
*
155327661 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
** *
155327707 ACAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGA
* * * *
155327753 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
155327788 TCAAAGATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 113 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGA
Found at i:155332858 original size:46 final size:46
Alignment explanation
Indices: 155332808--155332983 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
155332798 TGGTTGAGCA
155332808 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
155332854 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
155332899 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
155332947 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
155332984 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:155332964 original size:93 final size:93
Alignment explanation
Indices: 155332805--155332976 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
155332795 GGATGGTTGA
* *
155332805 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
155332870 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
155332898 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
155332963 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
155332977 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:155340427 original size:46 final size:46
Alignment explanation
Indices: 155340377--155340552 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
155340367 TGGTTGAGCA
155340377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
155340423 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
155340468 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
155340516 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
155340553 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:155340533 original size:93 final size:93
Alignment explanation
Indices: 155340374--155340545 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
155340364 GGATGGTTGA
* *
155340374 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
155340439 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
155340467 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
155340532 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
155340546 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:155342224 original size:48 final size:48
Alignment explanation
Indices: 155342153--155343121 Score: 1596
Period size: 48 Copynumber: 20.0 Consensus size: 48
155342143 TGTTACAACA
* * * *
155342153 TTCACATTAGCCATTCGGCTTTACCACATATACAAATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342201 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
155342249 TTCACATTAGCCATTTGGTAAATGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCA--T--T---CGGCTTTACCACATATACATATCACACATATAT
155342304 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
155342352 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342400 TTCACTTTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
155342448 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342496 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
155342544 TTCACATTCGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342592 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
155342640 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342688 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
155342736 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
155342784 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
155342832 TTCACATTCGCCATTCGGTTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
155342880 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
155342928 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
155342976 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
155343024 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
155343072 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
155343120 TT
1 TT
155343122 ATCTTGTACA
Statistics
Matches: 860, Mismatches: 54, Indels: 14
0.93 0.06 0.02
Matches are distributed among these distances:
48 813 0.95
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
55 43 0.05
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:155345788 original size:46 final size:46
Alignment explanation
Indices: 155345660--155345788 Score: 125
Period size: 47 Copynumber: 2.8 Consensus size: 46
155345650 GTGTCACAAA
** * * ** *
155345660 TACCTTGATTTTTCTACGGGCCATGGTATAAGTATTTTGTGAGTAGT
1 TACCTTGATTTAGCTAC-GGCCATGGTATAGGTACTCCGGGAGTAGT
* **
155345707 TACCTTGATTTAGCTATGGGTTATGGTATAGGTACTCCGGGA-TAAGT
1 TACCTTGATTTAGCTA-CGGCCATGGTATAGGTACTCCGGGAGT-AGT
*
155345754 TACCTTGATTTGGCTACGGCCATGGTATAGGTACT
1 TACCTTGATTTAGCTACGGCCATGGTATAGGTACT
155345789 TATCGATTGT
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
46 17 0.26
47 49 0.74
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.38
Consensus pattern (46 bp):
TACCTTGATTTAGCTACGGCCATGGTATAGGTACTCCGGGAGTAGT
Found at i:155356390 original size:40 final size:39
Alignment explanation
Indices: 155356318--155356499 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
155356308 GCCACTCGTT
* * * *
155356318 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
* * *
155356358 CAAATGCCTTCGGGACTTAACCCTGATTTAGTAATTTGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* *
155356398 CAAATGCCTT-TGGATCTTAGTCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGATTTAGTAACTCGCA
* * * *
155356437 CAAATGCCTTC--GATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
155356477 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
155356500 GACATCATTC
Statistics
Matches: 117, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
38 8 0.07
39 46 0.39
40 58 0.50
41 5 0.04
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Done.