Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 502 of 770
Found at i:155356438 original size:39 final size:40
Alignment explanation
Indices: 155356346--155356485 Score: 135
Period size: 39 Copynumber: 3.5 Consensus size: 40
155356336 AGCCCGGTTA
* * ** *
155356346 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTAACCCTGATT
1 TAGTAACTCGCACAAATGCCTT-TGGATCTTAGTCCGGATT
* *
155356386 TAGTAATTTGCACAAATGCCTTTGGATCTTAGTCC-GATT
1 TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGATT
* *
155356425 TAGTAACTCGCACAAATGCC-TTCGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGATT
* *
155356464 TAGTCACTTAGCACAAA-GCCTT
1 TAGTAAC-TCGCACAAATGCCTT
155356486 CGGGACTTAG
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
38 13 0.15
39 37 0.44
40 34 0.40
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGATT
Found at i:155356501 original size:40 final size:39
Alignment explanation
Indices: 155356299--155356501 Score: 155
Period size: 40 Copynumber: 5.1 Consensus size: 39
155356289 TGGAGTTTAA
* ** * *
155356299 CCGGATATAGCCACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
* *
155356339 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
* * * * * *
155356379 CCTGATTTAGTAATTTGCACAAATGCCTT-TGGATCTTAGT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
155356419 CC-GATTTAGTAACTCGCACAAATGCCTTC--GATCTTAGT
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGC
*
155356457 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
155356497 CCGGA
1 CCGGA
155356502 CATCATTCGA
Statistics
Matches: 134, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
38 11 0.08
39 43 0.32
40 77 0.57
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:155357220 original size:2 final size:2
Alignment explanation
Indices: 155357213--155357238 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
155357203 ATGTGCAAAC
155357213 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
155357239 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:155358958 original size:29 final size:29
Alignment explanation
Indices: 155358896--155358998 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
155358886 GTGACGAGAT
* * *
155358896 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
155358925 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
155358954 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
155358983 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
155358999 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:155366970 original size:29 final size:29
Alignment explanation
Indices: 155366908--155367010 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
155366898 GTGACGAGAT
* * *
155366908 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
155366937 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
155366966 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
155366995 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
155367011 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:155374988 original size:29 final size:29
Alignment explanation
Indices: 155374926--155375028 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
155374916 GTGACGAGAT
* * *
155374926 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
155374955 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
155374984 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
155375013 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
155375029 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:155380642 original size:40 final size:40
Alignment explanation
Indices: 155380583--155380751 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
155380573 CGGGACTTTA
* * *
155380583 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
155380623 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
155380663 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
155380703 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
155380743 CCCGGATAT
1 CCCGGATAT
155380752 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:155383892 original size:13 final size:12
Alignment explanation
Indices: 155383849--155383890 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
155383839 ACAGGTTTGG
155383849 CATGGCCTAGCA
1 CATGGCCTAGCA
*
155383861 CACGGCCTAGCA
1 CATGGCCTAGCA
*
155383873 CATGGGCTAGTCA
1 CATGGCCTAG-CA
155383886 CATGG
1 CATGG
155383891 GCATGTGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 19 0.73
13 7 0.27
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.17
Consensus pattern (12 bp):
CATGGCCTAGCA
Found at i:155387381 original size:14 final size:14
Alignment explanation
Indices: 155387362--155387401 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
155387352 TTTGCATCAC
155387362 ATATCAAATCC-TAA
1 ATATCAAA-CCATAA
155387376 ATATCAAACCATAA
1 ATATCAAACCATAA
155387390 AT-TC-AACCATAA
1 ATATCAAACCATAA
155387402 TCTAGACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.32
13 4 0.16
14 13 0.52
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.25
Consensus pattern (14 bp):
ATATCAAACCATAA
Found at i:155387751 original size:22 final size:22
Alignment explanation
Indices: 155387709--155387770 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
155387699 TTCATATTTC
* *
155387709 TCATTTAGCTCAAATACACATAA
1 TCATTT-GCTCATATATACATAA
155387732 TCATTTGCTCATATATACATAA
1 TCATTTGCTCATATATACATAA
155387754 -CATTT-CTACATA-ATACA
1 TCATTTGCT-CATATATACA
155387771 AACATATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 7 0.19
21 9 0.25
22 14 0.39
23 6 0.17
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.35
Consensus pattern (22 bp):
TCATTTGCTCATATATACATAA
Found at i:155388030 original size:43 final size:42
Alignment explanation
Indices: 155387969--155388062 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
155387959 TTCTAGACGT
*
155387969 GGTCTTACATGTAATCAAATATCAATGC-CACTGTCCCAGACAG
1 GGTCTTACATGAAATCAAATAT-AATGCTCA-TGTCCCAGACAG
* * *
155388012 GGTCTTACATGAAATCAAATATGATGCTGATGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATAATGCTCATGTCCCAGACAG
155388054 GGTCTTACA
1 GGTCTTACA
155388063 CATAAATCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 24 0.52
43 22 0.48
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATATAATGCTCATGTCCCAGACAG
Found at i:155388059 original size:42 final size:43
Alignment explanation
Indices: 155387963--155388062 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
155387953 CCAACGTTCT
* *
155387963 AGACGTGGTCTTACATGTAATCAAATATCAATGCCACTGTCCC
1 AGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTCCC
* * *
155388006 AGACAGGGTCTTACATGAAATCAAATAT-GATGCTGA-TGTCCC
1 AGACATGGTCTTACATGAAATCAAATATCAATGC-CACTGTCCC
155388048 AGACATGGTCTTACA
1 AGACATGGTCTTACA
155388063 CATAAATCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACATGAAATCAAATATCAATGCCACTGTCCC
Found at i:155391807 original size:30 final size:28
Alignment explanation
Indices: 155391767--155391867 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
155391757 GACAAGATTG
* * *
155391767 GCACTGAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
155391797 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
155391825 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
155391854 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155391868 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 17 0.27
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:155391831 original size:28 final size:29
Alignment explanation
Indices: 155391796--155391867 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
155391786 AAAATTGTAC
*
155391796 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
155391824 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
155391853 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
155391868 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:155399800 original size:30 final size:28
Alignment explanation
Indices: 155399760--155399859 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
155399750 GACAAGATTG
* *
155399760 GCACT-AGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
155399789 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
155399817 GCACTAAGTGTGCGAGCTGAATATATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
155399846 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155399860 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 25 0.40
29 25 0.40
30 12 0.19
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:155399823 original size:28 final size:29
Alignment explanation
Indices: 155399788--155399859 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
155399778 AAAATTGTAC
*
155399788 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATATATAT
155399816 AGCACTAAGTGTGCGAGCTGAATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATAT
155399845 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
155399860 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATATATAT
Found at i:155407759 original size:29 final size:29
Alignment explanation
Indices: 155407726--155407885 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
155407716 GTGACGAGAT
155407726 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
155407755 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
155407784 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
155407813 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
155407842 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
155407871 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
155407886 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:155415231 original size:40 final size:40
Alignment explanation
Indices: 155415186--155415352 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
155415176 CGGAATATAA
*
155415186 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
155415226 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
155415266 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
155415306 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
155415345 CCGGATAT
1 CCGGATAT
155415353 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:155415336 original size:80 final size:79
Alignment explanation
Indices: 155415202--155415352 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
155415192 ATAACCATGT
*
155415202 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
155415267 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
155415282 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
155415345 CCGGATAT
64 CCGGATAT
155415353 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:155423234 original size:40 final size:40
Alignment explanation
Indices: 155423189--155423355 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
155423179 CGGAATATAA
*
155423189 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
155423229 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
155423269 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
155423309 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
155423348 CCGGATAT
1 CCGGATAT
155423356 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:155423339 original size:80 final size:79
Alignment explanation
Indices: 155423205--155423355 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
155423195 ATAACCATGT
*
155423205 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
155423270 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
155423285 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
155423348 CCGGATAT
64 CCGGATAT
155423356 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:155426522 original size:24 final size:24
Alignment explanation
Indices: 155426490--155426709 Score: 318
Period size: 24 Copynumber: 9.6 Consensus size: 24
155426480 TATCTCAAAT
*
155426490 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
155426514 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155426538 GCACTATGTGTGCGATTT--TATG
1 GCACTATGTGTGCGATTTACTATG
155426560 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155426584 GCACTATGTGTGCGA--T--T-T-
1 GCACTATGTGTGCGATTTACTATG
155426602 --ACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155426624 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
155426648 GCACTA-GTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
155426671 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
155426695 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
155426710 ACATAATAAG
Statistics
Matches: 181, Mismatches: 4, Indels: 22
0.87 0.02 0.11
Matches are distributed among these distances:
16 13 0.07
18 1 0.01
19 1 0.01
20 2 0.01
21 1 0.01
22 23 0.13
23 22 0.12
24 118 0.65
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:155426607 original size:16 final size:16
Alignment explanation
Indices: 155426586--155426623 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
155426576 TTACTATGGC
155426586 ACTATGTGTGCGATTT
1 ACTATGTGTGCGATTT
155426602 ACTATGTGTGCGATTT
1 ACTATGTGTGCGATTT
155426618 ACTATG
1 ACTATG
155426624 GCACTATGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.21, C:0.13, G:0.24, T:0.42
Consensus pattern (16 bp):
ACTATGTGTGCGATTT
Found at i:155426607 original size:40 final size:40
Alignment explanation
Indices: 155426516--155426693 Score: 221
Period size: 40 Copynumber: 4.1 Consensus size: 40
155426506 TCACTATGGC
155426516 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTTAT
1 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA--TT-T
155426559 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 ---ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
155426602 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
*
155426642 ACTATGGCACTAGTGTGCGATTTACTATAGCACTATGTGTGCGATTT
1 AC--T---A-T-GTGTGCGATTTACTATGGCACTATGTGTGCGATTT
*
155426689 GCTAT
1 ACTAT
155426694 AGCTCTATGT
Statistics
Matches: 123, Mismatches: 2, Indels: 19
0.85 0.01 0.13
Matches are distributed among these distances:
40 42 0.34
41 1 0.01
42 2 0.02
43 1 0.01
44 2 0.02
45 2 0.02
46 38 0.31
47 35 0.28
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.39
Consensus pattern (40 bp):
ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
Found at i:155426637 original size:86 final size:86
Alignment explanation
Indices: 155426516--155426693 Score: 313
Period size: 86 Copynumber: 2.1 Consensus size: 86
155426506 TCACTATGGC
155426516 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT-TATGGCACTATGTGTGCGATTTAC
1 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTATATGGCACTA-GTGTGCGATTTAC
*
155426580 TATGGCACTATGTGTGCGATTT
65 TATAGCACTATGTGTGCGATTT
155426602 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTAGTGTGCGATTTAC
1 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA-TATGGCACTAGTGTGCGATTTAC
155426667 TATAGCACTATGTGTGCGATTT
65 TATAGCACTATGTGTGCGATTT
*
155426689 GCTAT
1 ACTAT
155426694 AGCTCTATGT
Statistics
Matches: 88, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
86 40 0.45
87 38 0.43
88 10 0.11
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.39
Consensus pattern (86 bp):
ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTATATGGCACTAGTGTGCGATTTACT
ATAGCACTATGTGTGCGATTT
Found at i:155426641 original size:64 final size:61
Alignment explanation
Indices: 155426540--155426669 Score: 233
Period size: 64 Copynumber: 2.1 Consensus size: 61
155426530 TTACTATGGC
155426540 ACTATGTGTGCGATTTTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 ACTATGTGTGCGATTTTATGGCACTATGTGTGCGATTTACTATGGCACTA-GTGTGCGATTT
155426602 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTAGTGTGCGATTT
1 ACTATGTGTGCGATTT--TATGGCACTATGTGTGCGATTTACTATGGCACTAGTGTGCGATTT
155426665 ACTAT
1 ACTAT
155426670 AGCACTATGT
Statistics
Matches: 66, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
62 16 0.24
63 16 0.24
64 34 0.52
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (61 bp):
ACTATGTGTGCGATTTTATGGCACTATGTGTGCGATTTACTATGGCACTAGTGTGCGATTT
Found at i:155426660 original size:47 final size:48
Alignment explanation
Indices: 155426602--155426731 Score: 174
Period size: 47 Copynumber: 2.7 Consensus size: 48
155426592 TGTGCGATTT
* *
155426602 ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGC
1 ACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATAGC
*
155426650 ACTA-GTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATAGC
1 ACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATAGC
* ** *
155426697 TCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 ACTATGTGTGCG-ATTTACTATAGCACTATGTGTGC
155426732 CACATTCGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 43 0.59
48 25 0.34
49 5 0.07
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (48 bp):
ACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATAGC
Found at i:155433154 original size:24 final size:24
Alignment explanation
Indices: 155433122--155433304 Score: 330
Period size: 24 Copynumber: 7.6 Consensus size: 24
155433112 TATCTCAAAT
*
155433122 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
155433146 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155433170 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155433194 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155433218 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
155433242 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
155433266 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
155433290 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
155433305 ACATAATAAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:155442754 original size:23 final size:23
Alignment explanation
Indices: 155442724--155442769 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
155442714 CATCAATATA
155442724 ACTATTAGCAATTGTTGCAAGTT
1 ACTATTAGCAATTGTTGCAAGTT
155442747 ACTATTAGCAATTGTTGCAAGTT
1 ACTATTAGCAATTGTTGCAAGTT
155442770 TTCTTTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (23 bp):
ACTATTAGCAATTGTTGCAAGTT
Found at i:155444327 original size:29 final size:30
Alignment explanation
Indices: 155444264--155444328 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
155444254 TACAAACTCC
* *
155444264 ACTTAATTGCATTAATATAAGTAAATTATT
1 ACTTGATTGCATTAATATAAATAAATTATT
* *
155444294 -GTTGATTGTATTAATATAAAT-AATTATT
1 ACTTGATTGCATTAATATAAATAAATTATT
155444322 ACTTGAT
1 ACTTGAT
155444329 AGACATAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (30 bp):
ACTTGATTGCATTAATATAAATAAATTATT
Found at i:155446590 original size:21 final size:20
Alignment explanation
Indices: 155446566--155446617 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
155446556 TTATGCCACA
155446566 TCAGTATTCTTATCCTAAATT
1 TCAGTATT-TTATCCTAAATT
* *
155446587 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTAAATT
*
155446607 TTAGTATTTTA
1 TCAGTATTTTA
155446618 ATTTGGATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTAAATT
Found at i:155446953 original size:37 final size:39
Alignment explanation
Indices: 155446876--155446953 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 39
155446866 AAGGATTGAA
*
155446876 TAGAAGAATAAAATAAAAATAAAAATATATGAAAATTTT
1 TAGAAGAATAAAATAAAAATAAAAATATATGAAAAGTTT
* * *
155446915 TAGATGAATAATAA-AACAATAAAAA-A-ATGACAAGTTT
1 TAGAAGAATAA-AATAAAAATAAAAATATATGAAAAGTTT
155446952 TA
1 TA
155446954 AAATGGACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
37 11 0.32
38 1 0.03
39 20 0.59
40 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.27
Consensus pattern (39 bp):
TAGAAGAATAAAATAAAAATAAAAATATATGAAAAGTTT
Found at i:155447147 original size:15 final size:15
Alignment explanation
Indices: 155447127--155447157 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
155447117 TATATATTAG
*
155447127 ATAATATATGATAAA
1 ATAATATATAATAAA
155447142 ATAATATATAATAAA
1 ATAATATATAATAAA
155447157 A
1 A
155447158 CCCAGTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAATATATAATAAA
Found at i:155449017 original size:133 final size:132
Alignment explanation
Indices: 155448871--155449397 Score: 480
Period size: 132 Copynumber: 4.0 Consensus size: 132
155448861 GAGATCTGTT
* ** * * * *
155448871 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGATATAAGACTTGTGGCTTCAATTTGCTCCCCTAC
1 ATCTTCAGCCTGCTCCACTGCTGC-TCAGGGAGACAAGACTAGTGGCTTAAATTTGCTCCCCTAC
* * * * * * *
155448936 TATCTT-GGGAAGATAAGATTCGCTGTCTTTGATCTGCTTCACTACTA-CTTAGGGAGATAGGAT
65 TACCTTAGGG-AGATAAGATTCG-TATCTTTGATCTGCTTCATTGCTACCTCATGGAGATAAGAT
155448999 CTACA
128 CTACA
* * * *
155449004 ATCTTCAGCCTGCTCCACT-CTTGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCCTAC
1 ATCTTCAGCCTGCTCCACTGC-TGCTCAGGGAGACAAGACTAGTGGCTTAAATTTGCTCCCCTAC
* * *
155449068 TACCTT-GGGAAGATAAGATTTGTCAT-TCTCGATCGGC-TCTATTGCTACCTCATGGAGATAAG
65 TACCTTAGGG-AGATAAGATTCGT-ATCT-TTGATCTGCTTC-ATTGCTACCTCATGGAGATAAG
155449130 ATCTACA
126 ATCTACA
* * * * * * * * *
155449137 ATCTTCAGCCTACTCCACTGCTGCTTAGGGAGATAGGA-TGGTGACTTGAATTTGCTCCCTTGC-
1 ATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAGACTAGTGGCTTAAATTTGCTCCCCTACT
* * *
155449200 CCCTTTAGGGAGATAA-ATTCGTCATC-TTCAGTCTGCTCCATTGCTACCTCATGGAGATAAGAT
66 ACC-TTAGGGAGATAAGATTCGT-ATCTTTGA-TCTGCTTCATTGCTACCTCATGGAGATAAGAT
155449263 CTACA
128 CTACA
* * * * * *
155449268 ATCTTCAGCCTGCTCCACTGCTGCTCAGAGATACAAGGCTAGTGGCTTAAATTTGCTCCCTTGCC
1 ATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAGACTAGTGGCTTAAATTTGCTCCCCTACT
* * * * *
155449333 ATCTTAGGGAGATAAGATTCGCCATCTTCGATTTGCTTCATTCCTACCTCATGGAGATAAGATCT
66 ACCTTAGGGAGATAAGATTCG-TATCTTTGATCTGCTTCATTGCTACCTCATGGAGATAAGATCT
155449398 GTGAATTCAC
Statistics
Matches: 320, Mismatches: 58, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
130 2 0.01
131 78 0.24
132 127 0.40
133 110 0.34
134 3 0.01
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (132 bp):
ATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAGACTAGTGGCTTAAATTTGCTCCCCTACT
ACCTTAGGGAGATAAGATTCGTATCTTTGATCTGCTTCATTGCTACCTCATGGAGATAAGATCTA
CA
Found at i:155450883 original size:2 final size:2
Alignment explanation
Indices: 155450878--155450906 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
155450868 CATATATAGG
155450878 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
155450907 GCCTTATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:155452132 original size:48 final size:48
Alignment explanation
Indices: 155452061--155452262 Score: 332
Period size: 48 Copynumber: 4.2 Consensus size: 48
155452051 CAAGATAAAT
* * *
155452061 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
155452109 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
155452157 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
155452205 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
155452253 ATGTGTATAT
1 ATATGTATAT
155452263 ATTGTGGCCG
Statistics
Matches: 142, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 142 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:155452445 original size:37 final size:37
Alignment explanation
Indices: 155452395--155452465 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
155452385 GGAAATATAT
*
155452395 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTCTGGAGATTTTG
*
155452432 TCCGGGTAAGACCCGATGACTACGTCTGGGGATT
1 TCCGGGTAAGACCCGATGACTACGTCTGGAGATT
155452466 ATTCGAGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTCTGGAGATTTTG
Found at i:155454278 original size:43 final size:42
Alignment explanation
Indices: 155454161--155454363 Score: 388
Period size: 43 Copynumber: 4.8 Consensus size: 42
155454151 TGAAACTCGG
155454161 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
155454203 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
155454245 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGG-CTTCGTGCCTAGCAGGCTTCGTGCCGGT
155454288 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGG-CTTCGTGCCTAGCAGGCTTCGTGCCGGT
155454331 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTT
1 GATATGTATTCGGGCTTCGTGCCTAGCAGGCTT
155454364 AATGCGGTGA
Statistics
Matches: 160, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
42 75 0.47
43 85 0.53
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (42 bp):
GATATGTATTCGGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:155454564 original size:29 final size:29
Alignment explanation
Indices: 155454531--155454629 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
155454521 ATGATTAGAG
*
155454531 GCACTGTGTGTGCAAATTCCGTTAACCGA
1 GCACTATGTGTGCAAATTCCGTTAACCGA
* * **
155454560 GCACTATGTGTGCGAGA-TCAG-TAATTGA
1 GCACTATGTGTGC-AAATTCCGTTAACCGA
* * *
155454588 GGCA-TGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATTCCGTTAACCGA
*
155454617 GCATTATGTGTGC
1 GCACTATGTGTGC
155454630 GAGATTGGTA
Statistics
Matches: 52, Mismatches: 13, Indels: 10
0.69 0.17 0.13
Matches are distributed among these distances:
27 1 0.02
28 18 0.35
29 31 0.60
30 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCGTTAACCGA
Found at i:155454606 original size:57 final size:57
Alignment explanation
Indices: 155454528--155454692 Score: 244
Period size: 57 Copynumber: 2.9 Consensus size: 57
155454518 CGAATGATTA
*
155454528 GAGGCACTGTGTGTGCAAATTCCGTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* **
155454586 GAGGCA-TGTGTGTGCGAATTCCTTTAACCGAGCATTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTAACCGAGCACTATGTGTGCGAGATCAGTAATT
*
155454643 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCCTT-AACCGAGCACTATGTGTGCGAGATC
155454693 GGTCAGTGGG
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 76 0.78
58 19 0.20
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCGAATTCCTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:155454655 original size:29 final size:29
Alignment explanation
Indices: 155454560--155454691 Score: 85
Period size: 29 Copynumber: 4.6 Consensus size: 29
155454550 CGTTAACCGA
*
155454560 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** **
155454589 GCA-TGTGTGTGCGA-ATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGATT--AGTAATTGAG
* *
155454617 GCATTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** **
155454646 GCACTGTGTGTGCGAG-TTCTTCAACCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
155454674 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
155454692 CGGTCAGTGG
Statistics
Matches: 78, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
27 2 0.03
28 36 0.46
29 37 0.47
30 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:155454684 original size:28 final size:27
Alignment explanation
Indices: 155454553--155454689 Score: 96
Period size: 28 Copynumber: 4.9 Consensus size: 27
155454543 CAAATTCCGT
*
155454553 TAACCGAGCACTATGTGTGCGAGATCAG
1 TAACCGAGCACTATGTGTGCGAGTTC-G
** * * *
155454581 TAATTGAGGCA-TGTGTGTGCGAATTCCTT
1 TAACCGA-GCACTATGTGTGCGAGTT-C-G
* *
155454610 TAACCGAGCATTATGTGTGCGAGATTGG
1 TAACCGAGCACTATGTGTGCGAG-TTCG
** * *
155454638 TAATTGAGGCACTGTGTGTGCGAGTTCT
1 TAACCGA-GCACTATGTGTGCGAGTTCG
155454666 TCAACCGAGCACTATGTGTGCGAG
1 T-AACCGAGCACTATGTGTGCGAG
155454690 ATCGGTCAGT
Statistics
Matches: 81, Mismatches: 22, Indels: 12
0.70 0.19 0.10
Matches are distributed among these distances:
28 42 0.52
29 37 0.46
30 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (27 bp):
TAACCGAGCACTATGTGTGCGAGTTCG
Found at i:155454705 original size:28 final size:28
Alignment explanation
Indices: 155454621--155454713 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 28
155454611 AACCGAGCAT
* * *
155454621 TATGTGTGCGAGATTGGTAATTGAGGCAC
1 TATGTGTGCGAGATCGGTCACTG-GGCAC
* * * * *
155454650 TGTGTGTGCGAGTTC-TTCAACCGAGCAC
1 TATGTGTGCGAGATCGGTC-ACTGGGCAC
*
155454678 TATGTGTGCGAGATCGGTCAGTGGGCAC
1 TATGTGTGCGAGATCGGTCACTGGGCAC
*
155454706 TAAGTGTG
1 TATGTGTG
155454714 TGAAATGAGA
Statistics
Matches: 47, Mismatches: 15, Indels: 5
0.70 0.22 0.07
Matches are distributed among these distances:
28 31 0.66
29 16 0.34
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGTGTGCGAGATCGGTCACTGGGCAC
Found at i:155456926 original size:2 final size:2
Alignment explanation
Indices: 155456921--155456947 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
155456911 TCATATATGG
155456921 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
155456948 GCCTTATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:155458227 original size:50 final size:50
Alignment explanation
Indices: 155458099--155458308 Score: 281
Period size: 50 Copynumber: 4.3 Consensus size: 50
155458089 TACAAGATAA
* *
155458099 ATATATATATGTGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
155458148 --ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
155458196 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
155458246 ----ATATGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
155458292 ATGTGTATATATTGTGG
1 ATATATATATA-TGTGG
155458309 CCGAATGACC
Statistics
Matches: 140, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 44 0.31
47 17 0.12
48 25 0.18
50 49 0.35
51 5 0.04
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (50 bp):
ATATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:155458272 original size:46 final size:46
Alignment explanation
Indices: 155458110--155458299 Score: 265
Period size: 46 Copynumber: 4.0 Consensus size: 46
155458100 TATATATATG
*
155458110 TGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TA
** *
155458157 TGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGATATATATATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG----ATATGTA
*
155458207 TGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
*
155458253 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
155458299 T
1 T
155458300 ATATTGTGGC
Statistics
Matches: 128, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
46 51 0.40
47 10 0.08
48 25 0.20
50 38 0.30
52 4 0.03
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (46 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
Found at i:155458287 original size:96 final size:96
Alignment explanation
Indices: 155458099--155458308 Score: 323
Period size: 96 Copynumber: 2.2 Consensus size: 96
155458089 TACAAGATAA
* * *
155458099 ATATATATATGTGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTA
1 ATATATATATATGTGGTAAACCGAATGGCTAATGTGAAATATGTATGAGATATG-ATATGTGGTA
155458164 AAGCCGAATGGCTAACATGAAATATGTATGAG
65 AAGCCGAATGGCTAACATGAAATATGTATGAG
155458196 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATG-TATGTGGTA
1 ATATATATATATGTGGTAAA-CCGAATGGCTAATGTGAAATATGTATGAGATATGATATGTGGTA
**
155458260 AAGCCGAATGGCTAATGTGAAATATGTATGAG
65 AAGCCGAATGGCTAACATGAAATATGTATGAG
* *
155458292 ATGTGTATATATTGTGG
1 ATATATATATA-TGTGG
155458309 CCGAATGACC
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
96 48 0.46
97 24 0.23
98 32 0.31
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (96 bp):
ATATATATATATGTGGTAAACCGAATGGCTAATGTGAAATATGTATGAGATATGATATGTGGTAA
AGCCGAATGGCTAACATGAAATATGTATGAG
Found at i:155458489 original size:37 final size:37
Alignment explanation
Indices: 155458434--155458543 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 37
155458424 GGAAATATAT
155458434 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
155458471 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
155458508 TCCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
155458544 TCGAGCTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:155464872 original size:80 final size:80
Alignment explanation
Indices: 155464788--155464936 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
155464778 TATGGTAACC
* * * *
155464788 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
155464852 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
155464868 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
155464933 CCGG
66 CCGG
155464937 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:155464878 original size:40 final size:38
Alignment explanation
Indices: 155464829--155464936 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
155464819 ATCACGATTT
*
155464829 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
155464869 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
155464909 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
155464937 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:155468895 original size:29 final size:28
Alignment explanation
Indices: 155468825--155468899 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
155468815 ATACTCGATT
* *
155468825 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
155468853 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
155468882 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
155468900 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:155468916 original size:29 final size:29
Alignment explanation
Indices: 155468883--155468956 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
155468873 CCTTCGAGCT
155468883 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
155468912 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
155468941 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
155468957 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:155475794 original size:80 final size:80
Alignment explanation
Indices: 155475710--155475858 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
155475700 TATGGTAACC
* * * *
155475710 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
155475774 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
155475790 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
155475855 CCGG
66 CCGG
155475859 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:155475800 original size:40 final size:38
Alignment explanation
Indices: 155475751--155475858 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
155475741 ATCACGATTT
*
155475751 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
155475791 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
155475831 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
155475859 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:155483869 original size:80 final size:80
Alignment explanation
Indices: 155483785--155483933 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
155483775 TATGGTAACC
* * * *
155483785 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
155483849 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
155483865 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
155483930 CCGG
66 CCGG
155483934 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:155483875 original size:40 final size:38
Alignment explanation
Indices: 155483826--155483933 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
155483816 ATCACGATTT
*
155483826 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
155483866 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
155483906 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
155483934 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:155485854 original size:22 final size:22
Alignment explanation
Indices: 155485822--155485863 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
155485812 TGAAATATAA
**
155485822 AATATACTAATTTAACTTATTG
1 AATATACTAATGAAACTTATTG
*
155485844 AATATATTAATGAAACTTAT
1 AATATACTAATGAAACTTAT
155485864 AATTGAGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (22 bp):
AATATACTAATGAAACTTATTG
Found at i:155490336 original size:28 final size:28
Alignment explanation
Indices: 155490267--155490367 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
155490257 GACAAGATTG
* * * *
155490267 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
155490297 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
155490325 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
155490354 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155490368 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:155495780 original size:28 final size:27
Alignment explanation
Indices: 155495730--155495842 Score: 149
Period size: 27 Copynumber: 4.1 Consensus size: 27
155495720 AGTATGGCTG
* *
155495730 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
155495756 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
155495784 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
155495811 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA-TTGTGGCAGAGCCA
155495839 CCAG
1 CCAG
155495843 GACTCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.47
28 33 0.42
29 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:155495813 original size:55 final size:54
Alignment explanation
Indices: 155495730--155495842 Score: 174
Period size: 55 Copynumber: 2.1 Consensus size: 54
155495720 AGTATGGCTG
*
155495730 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTTGTGGCAGAGCCA
* *
155495784 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTTGTGGCAGAGCCA
155495839 CCAG
1 CCAG
155495843 GACTCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
54 19 0.35
55 35 0.65
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTTGTGGCAGAGCCA
Found at i:155499046 original size:19 final size:22
Alignment explanation
Indices: 155499022--155499063 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
155499012 AGTCAGAGTC
155499022 CTTCGG-AACACA-AA-TCCTT
1 CTTCGGAAACACAGAACTCCTT
155499041 CTTCGGAAACACAGAACTCCTT
1 CTTCGGAAACACAGAACTCCTT
155499063 C
1 C
155499064 GTCATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 2 0.10
22 6 0.30
ACGTcount: A:0.31, C:0.33, G:0.12, T:0.24
Consensus pattern (22 bp):
CTTCGGAAACACAGAACTCCTT
Found at i:155503649 original size:28 final size:27
Alignment explanation
Indices: 155503601--155503706 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
155503591 CTGCCAGAAT
* *
155503601 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
155503628 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
155503655 AGATATATGTGGCAGAGCCATCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
* *
155503682 AGATAATTTATGGCATAGCCACCAG
1 AGATAA--TGTGGCAGAGCCACCAG
155503707 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.01
27 36 0.53
28 31 0.46
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:155503680 original size:55 final size:54
Alignment explanation
Indices: 155503594--155503706 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 54
155503584 AGCATGGCTG
* * *
155503594 CCAGAATAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCATGGCAGAGCCA
* * * *
155503648 CCAGAACAGATATATGTGGCAGAGCCATCAGATCAGATAATTTATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCATGGCAGAGCCA
155503703 CCAG
1 CCAG
155503707 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 18 0.36
55 32 0.64
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCATGGCAGAGCCA
Found at i:155507753 original size:28 final size:28
Alignment explanation
Indices: 155507643--155507757 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
155507633 GTGAGCATGA
* *
155507643 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
155507671 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
155507700 ATAT-ACAGGTGGTTTGGGCCTAATGGGCC
1 ATATGA-ATGT-GATTGGGCCTAATGGGCC
* *
155507729 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
155507757 A
1 A
155507758 GATACAAGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 29 0.39
29 43 0.58
30 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:155509532 original size:23 final size:23
Alignment explanation
Indices: 155509506--155509553 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
155509496 TGATGATGAA
*
155509506 AAATGAAAGATATGATTTTGATT
1 AAATGAAAGATATGATTTAGATT
155509529 AAATGAAAGATATGATTTAGATT
1 AAATGAAAGATATGATTTAGATT
155509552 AA
1 AA
155509554 CATATTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (23 bp):
AAATGAAAGATATGATTTAGATT
Found at i:155511482 original size:2 final size:2
Alignment explanation
Indices: 155511475--155511508 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
155511465 CGACTACTTG
* *
155511475 AT AT AT AT AT AT AC AT AT AT AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155511509 TTGATGTTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:155513200 original size:68 final size:70
Alignment explanation
Indices: 155513116--155513313 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
155513106 ACACCCTGTA
* * * *
155513116 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
155513178 ATAAAT
65 ATAAAT
*
155513184 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
155513249 ATAAAT
65 ATAAAT
*
155513255 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
155513314 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:155513227 original size:41 final size:41
Alignment explanation
Indices: 155513182--155513299 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
155513172 TGAAAGATAA
155513182 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
155513223 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155513253 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155513294 ATGTAG
1 ATGTAG
155513300 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:155513239 original size:71 final size:71
Alignment explanation
Indices: 155513150--155513313 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
155513140 GAGATGTATC
155513150 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155513215 AGGACA
66 AGGACA
155513221 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155513286 AGGACA
66 AGGACA
155513292 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155513314 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:155520760 original size:68 final size:70
Alignment explanation
Indices: 155520676--155520873 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
155520666 ACACCCTGTA
* * * *
155520676 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
155520738 ATAAAT
65 ATAAAT
*
155520744 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
155520809 ATAAAT
65 ATAAAT
*
155520815 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
155520874 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:155520787 original size:41 final size:41
Alignment explanation
Indices: 155520742--155520859 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
155520732 TGAAAGATAA
155520742 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
155520783 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155520813 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155520854 ATGTAG
1 ATGTAG
155520860 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:155520799 original size:71 final size:71
Alignment explanation
Indices: 155520710--155520873 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
155520700 GAGATGTATC
155520710 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155520775 AGGACA
66 AGGACA
155520781 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155520846 AGGACA
66 AGGACA
155520852 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155520874 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:155523971 original size:40 final size:39
Alignment explanation
Indices: 155523926--155524091 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
155523916 CGGAATATAA
155523926 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
155523966 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
155524005 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
155524045 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
155524084 CCGGATAT
1 CCGGATAT
155524092 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:155524048 original size:79 final size:79
Alignment explanation
Indices: 155523942--155524091 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
155523932 ATAATCACGT
*
155523942 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
155524005 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
155524021 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
155524086 GGATAT
66 GGATAT
155524092 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:155525374 original size:57 final size:56
Alignment explanation
Indices: 155525277--155525388 Score: 136
Period size: 57 Copynumber: 2.0 Consensus size: 56
155525267 TCCTCCCCCT
*
155525277 TTTCCTTAGTATTTCGGCCAAGAAGATGAAAAGGATGAACA-AATTTTTTCTTTTC
1 TTTCCTTAGTAATTCGGCCAAGAAGATGAAAAGGATGAACATAATTTTTTCTTTTC
*** * **
155525332 TTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTTT
1 TTTCCTTAGTA-ATTCGGCCAAGAAGAT-GAAAAGGATGAACATAATTTTTTCTTTT
155525389 TTTTTTCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
55 11 0.23
56 12 0.26
57 13 0.28
58 11 0.23
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (56 bp):
TTTCCTTAGTAATTCGGCCAAGAAGATGAAAAGGATGAACATAATTTTTTCTTTTC
Found at i:155525378 original size:55 final size:52
Alignment explanation
Indices: 155525277--155525387 Score: 125
Period size: 55 Copynumber: 2.1 Consensus size: 52
155525267 TCCTCCCCCT
*
155525277 TTTCCTTAGTATTTCGGCCAAGAAGATGAAAAGGATGAACAAATTTTTTCTTTTC
1 TTTCCTTAGTAATTCGGCCAAGAAGATGAAAAGGATGAAC-AA-TTTTT-TTTTC
*** *
155525332 TTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAAC-ATTTTTTTTTC
1 TTTCCTTAGTA-ATTCGGCCAAGAAGAT-GAAAAGGATGAACAATTTTTTTTTC
155525385 TTT
1 TTT
155525388 TTTTTTTCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
53 8 0.16
54 5 0.10
55 12 0.24
56 12 0.24
57 12 0.24
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (52 bp):
TTTCCTTAGTAATTCGGCCAAGAAGATGAAAAGGATGAACAATTTTTTTTTC
Found at i:155531978 original size:40 final size:40
Alignment explanation
Indices: 155531933--155532099 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
155531923 CGGAATATAA
155531933 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
155531973 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
155532013 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
155532053 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
155532092 CCGGATAT
1 CCGGATAT
155532100 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:155533356 original size:56 final size:53
Alignment explanation
Indices: 155533293--155533401 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
155533283 CCCCCTTTTC
155533293 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTT-TTTTCTTT
***
155533349 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
155533402 TTTTTTTTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 6 0.12
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
Found at i:155544094 original size:46 final size:44
Alignment explanation
Indices: 155544027--155544202 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 44
155544017 TGTAACCCGC
155544027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGAATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAATTC-CAT
* *
155544073 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCC-A-T
* ** *
155544118 -TATATCTCTCGAACTCGAACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATTC-CAT
155544166 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
155544203 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.06
45 3 0.03
46 62 0.57
47 27 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATTCCAT
Found at i:155544147 original size:93 final size:93
Alignment explanation
Indices: 155544035--155544206 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
155544025 GCCCATAAGT
* *
155544035 GAACTCGGACTCAACTCAACGAGTTCAGGA-ATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGTTC-GGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
155544099 ACGAGCTCGGATGCCTAGTTATATCTCTC
65 ACGAGCTCGGATGCCTAGTTATATCTCTC
155544128 GAACTCGAACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
155544193 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
155544207 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:155547369 original size:73 final size:74
Alignment explanation
Indices: 155547140--155547377 Score: 174
Period size: 73 Copynumber: 3.3 Consensus size: 74
155547130 CATGACACAA
* * * *
155547140 CCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTACTTCTTTGTCGC
1 CCTAAGTGTGTCGTGACATACCTTTGAAGACATCCCAAAGAAAAGTATACTTACTTTTTTGTCAC
155547205 GACACATGT
66 GACACATGT
* * *** * * ****
155547214 CCTGA-TGTGTCGTGACAT-CGACTCT--AG--ATGGGAAATAATATGAG-CTAGGGGCATTTTG
1 CCTAAGTGTGTCGTGACATAC--CTTTGAAGACATCCCAAAGAA-A--AGTATACTTAC-TTTT-
*
155547272 GTTG-CATGACACA-G-
59 -TTGTCACGACACATGT
*
155547286 CCTAAGTGTGTTGTGACATACCTTTGAAGACATCCCAAAGAAAAGTATACTTACTTTTTTGTCAC
1 CCTAAGTGTGTCGTGACATACCTTTGAAGACATCCCAAAGAAAAGTATACTTACTTTTTTGTCAC
155547351 GACACATGT
66 GACACATGT
155547360 CCTAA-TGTGTCGTGACAT
1 CCTAAGTGTGTCGTGACAT
155547378 CGACTCTAGA
Statistics
Matches: 116, Mismatches: 30, Indels: 37
0.63 0.16 0.20
Matches are distributed among these distances:
70 7 0.06
71 4 0.03
72 21 0.18
73 49 0.42
74 24 0.21
75 4 0.03
76 7 0.06
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (74 bp):
CCTAAGTGTGTCGTGACATACCTTTGAAGACATCCCAAAGAAAAGTATACTTACTTTTTTGTCAC
GACACATGT
Found at i:155547393 original size:146 final size:146
Alignment explanation
Indices: 155547129--155547419 Score: 537
Period size: 146 Copynumber: 2.0 Consensus size: 146
155547119 ACCTTCGATG
155547129 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
1 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
* *
155547194 TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
66 TTCTTTGTCACGACACATGTCCTAATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
155547259 TAGGGGCATTTTGGTT
131 TAGGGGCATTTTGGTT
* *
155547275 GCATGACACAGCCTAAGTGTGTTGTGACATACCTTTGAAGACATCCCAAAGAAAAGTATACTTAC
1 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
*
155547340 TTTTTTGTCACGACACATGTCCTAATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
66 TTCTTTGTCACGACACATGTCCTAATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
155547405 TAGGGGCATTTTGGT
131 TAGGGGCATTTTGGT
155547420 CCATATAATT
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 140 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (146 bp):
GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
TTCTTTGTCACGACACATGTCCTAATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
TAGGGGCATTTTGGTT
Found at i:155555154 original size:24 final size:24
Alignment explanation
Indices: 155555126--155555186 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
155555116 AACCGTATTT
* * *
155555126 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
155555150 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
155555174 GCACACATAGTGC
1 GCACACATAGTGC
155555187 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:155555718 original size:17 final size:19
Alignment explanation
Indices: 155555696--155555737 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
155555686 ATTTGGTCAT
*
155555696 CATTTTGTCA-TTCA-ACA
1 CATTTTGTCACTTCATAAA
155555713 CATTTT-TCACTTCATAAA
1 CATTTTGTCACTTCATAAA
155555731 CATTTTG
1 CATTTTG
155555738 ACCGTATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.29, C:0.21, G:0.05, T:0.45
Consensus pattern (19 bp):
CATTTTGTCACTTCATAAA
Found at i:155560785 original size:68 final size:70
Alignment explanation
Indices: 155560713--155560910 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
155560703 ACACCCTGTA
* * * *
155560713 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
155560775 ATAAAT
65 ATAAAT
*
155560781 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
155560846 ATAAAT
65 ATAAAT
*
155560852 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
155560911 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:155560824 original size:41 final size:41
Alignment explanation
Indices: 155560779--155560896 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
155560769 TGAAAGATAA
155560779 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
155560820 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155560850 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
155560891 ATGTAG
1 ATGTAG
155560897 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:155560836 original size:71 final size:71
Alignment explanation
Indices: 155560747--155560910 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
155560737 GAGATGTATC
155560747 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155560812 AGGACA
66 AGGACA
155560818 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155560883 AGGACA
66 AGGACA
155560889 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155560911 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:155568451 original size:69 final size:70
Alignment explanation
Indices: 155568313--155568472 Score: 290
Period size: 69 Copynumber: 2.3 Consensus size: 70
155568303 GAGATGTATC
155568313 CCATGTAGACAA-AGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155568377 AGACA
66 AGACA
155568382 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTA-GTCGCATGC-TGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
155568445 AGGACA
66 A-GACA
155568451 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
155568473 AGACAAATCG
Statistics
Matches: 89, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
68 14 0.16
69 47 0.53
70 28 0.31
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGACA
Found at i:155573887 original size:39 final size:40
Alignment explanation
Indices: 155573828--155573955 Score: 188
Period size: 39 Copynumber: 3.2 Consensus size: 40
155573818 CGGAATTTAG
* ** *
155573828 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* *
155573868 CCGG-TATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
155573907 CCGGATATAACAACTC-CACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
155573946 CCGGATATAA
1 CCGGATATAA
155573956 TCACTAGCAT
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 65 0.82
40 14 0.18
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:155573917 original size:79 final size:78
Alignment explanation
Indices: 155573824--155573988 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 78
155573814 TCTTCGGAAT
* * * *
155573824 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGG-TAT-AGCAACTCGCA
1 TTAGCCCGGATATAACAAC-ACCACAAATGCCTTCGGGTCTTAACCCGGATATAAGC-ACTAGCA
* *
155573886 CAAATGCCTTCGGGTC
64 CAAATGACTT-GGGGC
* * *
155573902 TTAGCCCGGATATAACAACTCCACAAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCATA
1 TTAGCCCGGATATAACAACACCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCACA
155573967 AATGACTTGGGGC
66 AATGACTTGGGGC
155573980 TTAGCCCGG
1 TTAGCCCGG
155573989 GTATCATTCA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 43 0.57
79 30 0.40
80 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
TTAGCCCGGATATAACAACACCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCACA
AATGACTTGGGGC
Found at i:155573927 original size:78 final size:78
Alignment explanation
Indices: 155573845--155573988 Score: 202
Period size: 78 Copynumber: 1.8 Consensus size: 78
155573835 TAACCACAAG
* * * *
155573845 CACAATTGCCTTCGGGTCTTAACCCGG-TAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAAGC-ACTAGCACAAATGACTT-GGGGCTTAGCC
155573908 CGGATATAACAACTC
64 CGGATATAACAACTC
* *
155573923 CACAAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCATAAATGACTTGGGGCTTAGCCCG
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCACAAATGACTTGGGGCTTAGCCCG
155573988 G
66 G
155573989 GTATCATTCA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
78 39 0.67
79 17 0.29
80 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCACAAATGACTTGGGGCTTAGCCCG
GATATAACAACTC
Found at i:155579849 original size:53 final size:53
Alignment explanation
Indices: 155579668--155579876 Score: 247
Period size: 53 Copynumber: 3.9 Consensus size: 53
155579658 ATTAGGTTGT
* * * *
155579668 AAGGATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTTATAAGGC
* * * * * * *
155579722 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGT-TTATAAGGC
* * * *
155579777 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGC
*
155579830 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
155579877 AAAAGGAAAG
Statistics
Matches: 128, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
53 49 0.38
54 39 0.30
55 40 0.31
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:155585620 original size:23 final size:22
Alignment explanation
Indices: 155585581--155585624 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
155585571 ATGGCAATAT
155585581 CATGAGAATGAGCATAGTAATGG
1 CATGAGAATGAGCATAG-AATGG
*
155585604 CATGAGTATG-GCAATAGAATG
1 CATGAGAATGAGC-ATAGAATG
155585625 AGGTTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.23
Consensus pattern (22 bp):
CATGAGAATGAGCATAGAATGG
Found at i:155592792 original size:41 final size:42
Alignment explanation
Indices: 155592714--155592818 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 42
155592704 ATCAAATCAT
* * *
155592714 CGGCATTTAGCCTGCTAGGTTTTAAACTCGAGTTCA-TTCAC
1 CGGCATTTAGCCTGCTAGGCTTGAAACCCGAGTTCATTTCAC
* *
155592755 CGGCATTTCGCCTGCTAGGCTTGAAGCCCGA-TATCATTTCAC
1 CGGCATTTAGCCTGCTAGGCTTGAAACCCGAGT-TCATTTCAC
*
155592797 TGGCATTATAGCCTGCTAGGCT
1 CGGCATT-TAGCCTGCTAGGCT
155592819 CAAAGGCCTG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 29 0.54
42 11 0.20
43 13 0.24
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (42 bp):
CGGCATTTAGCCTGCTAGGCTTGAAACCCGAGTTCATTTCAC
Found at i:155596700 original size:8 final size:8
Alignment explanation
Indices: 155596687--155596721 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
155596677 AAACAATAGC
155596687 AGCACTGT
1 AGCACTGT
155596695 AGCACTGT
1 AGCACTGT
155596703 AGCACTGT
1 AGCACTGT
*
155596711 AGCACTCT
1 AGCACTGT
155596719 AGC
1 AGC
155596722 TCAAACTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (8 bp):
AGCACTGT
Found at i:155607134 original size:20 final size:20
Alignment explanation
Indices: 155607109--155607146 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
155607099 GTTTATTCGT
*
155607109 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
155607129 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
155607147 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:155608803 original size:28 final size:28
Alignment explanation
Indices: 155608771--155608839 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
155608761 GCGTAGATCA
155608771 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
155608799 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
155608827 CGATA-TACCCCTA
1 CGAAATTACCCCTA
155608840 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:155615140 original size:20 final size:20
Alignment explanation
Indices: 155615115--155615152 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
155615105 GTTTATTCGC
*
155615115 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
155615135 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
155615153 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:155616800 original size:28 final size:28
Alignment explanation
Indices: 155616768--155616836 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
155616758 GCGTAGATCA
155616768 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
155616796 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
155616824 CGATA-TACCCCTA
1 CGAAATTACCCCTA
155616837 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:155623853 original size:29 final size:29
Alignment explanation
Indices: 155623821--155623981 Score: 304
Period size: 29 Copynumber: 5.5 Consensus size: 29
155623811 ATAGTGAATC
155623821 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
155623850 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
155623880 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
155623909 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
155623938 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
155623967 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
155623982 GTACAATTTT
Statistics
Matches: 130, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
29 101 0.78
30 29 0.22
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:155623960 original size:58 final size:59
Alignment explanation
Indices: 155623821--155624011 Score: 312
Period size: 58 Copynumber: 3.2 Consensus size: 59
155623811 ATAGTGAATC
155623821 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
155623880 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* * * * * *
155623938 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAACC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGCT
155623998 CGCACACTTAGTGC
1 CGCACACTTAGTGC
155624012 CAATCTTGTC
Statistics
Matches: 124, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
58 55 0.44
59 49 0.40
60 20 0.16
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:155623991 original size:88 final size:89
Alignment explanation
Indices: 155623820--155624011 Score: 307
Period size: 88 Copynumber: 2.2 Consensus size: 89
155623810 TATAGTGAAT
155623820 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
* * *
155623885 ACTTAGTGCTATATA-TTTTCAGC
66 ACTTAGTGCTATAAATTTTTAAAC
* *
155623908 TCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
*
155623972 ACTTAGTGCTGTACAATTTTTAAAC
66 ACTTAGTGCTATA-AATTTTTAAAC
155623997 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
155624012 CAATCTTGTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
87 26 0.27
88 49 0.52
89 20 0.21
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (89 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCTCGCAC
ACTTAGTGCTATAAATTTTTAAAC
Found at i:155627304 original size:30 final size:30
Alignment explanation
Indices: 155627268--155627398 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
155627258 GACAAGATTG
* * * * *
155627268 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
155627298 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
155627326 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
155627356 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
155627385 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155627399 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:155627359 original size:58 final size:58
Alignment explanation
Indices: 155627268--155627398 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
155627258 GACAAGATTG
* * * * * *
155627268 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
155627326 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
155627385 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155627399 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:155629886 original size:7 final size:7
Alignment explanation
Indices: 155629874--155629908 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
155629864 ATATGGACTA
155629874 AAATATT
1 AAATATT
155629881 AAATATT
1 AAATATT
155629888 AAATATT
1 AAATATT
*
155629895 AAATTTT
1 AAATATT
*
155629902 TAATATT
1 AAATATT
155629909 TAATTTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (7 bp):
AAATATT
Found at i:155629906 original size:21 final size:21
Alignment explanation
Indices: 155629882--155629937 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
155629872 TAAAATATTA
155629882 AATATTAAATATTAAATTTTT
1 AATATTAAATATTAAATTTTT
* * *
155629903 AATATTTAATTTTTAATTTTT
1 AATATTAAATATTAAATTTTT
*
155629924 AGATTTTAAATATT
1 A-ATATTAAATATT
155629938 TTGAAGATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
AATATTAAATATTAAATTTTT
Found at i:155629913 original size:14 final size:14
Alignment explanation
Indices: 155629874--155629938 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
155629864 ATATGGACTA
* *
155629874 AAATATTAAATATT
1 AAATATTTAATTTT
*
155629888 AAATATTAAATTTT
1 AAATATTTAATTTT
*
155629902 TAATATTTAATTTT
1 AAATATTTAATTTT
* *
155629916 TAATTTTTAGATTTT
1 AAATATTTA-ATTTT
155629931 AAATATTT
1 AAATATTT
155629939 TGAAGATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 33 0.75
15 11 0.25
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
AAATATTTAATTTT
Found at i:155629963 original size:8 final size:8
Alignment explanation
Indices: 155629893--155629963 Score: 60
Period size: 7 Copynumber: 8.9 Consensus size: 8
155629883 ATATTAAATA
155629893 TTAAATTT
1 TTAAATTT
*
155629901 TT-AATAT
1 TTAAATTT
155629908 TT-AATTT
1 TTAAATTT
155629915 TT-AATTT
1 TTAAATTT
*
155629922 TTAGA-TT
1 TTAAATTT
155629929 TTAAATATT
1 TTAAAT-TT
155629938 TTGAAGATTT
1 TT-AA-ATTT
155629948 TTATAATTT
1 TTA-AATTT
155629957 TTAAATT
1 TTAAATT
155629964 AACATATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
7 25 0.47
8 7 0.13
9 12 0.23
10 7 0.13
11 2 0.04
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (8 bp):
TTAAATTT
Found at i:155630624 original size:13 final size:13
Alignment explanation
Indices: 155630601--155630633 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
155630591 CCCTAAATCC
155630601 TAAATCCTACACCA
1 TAAA-CCTACACCA
155630615 TAAACCTACACCA
1 TAAACCTACACCA
155630628 TAAACC
1 TAAACC
155630634 CTAAATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAACCTACACCA
Found at i:155630836 original size:20 final size:20
Alignment explanation
Indices: 155630798--155630836 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
155630788 GACCCTAACT
*
155630798 ATAAATAAACCAGTTAAATA
1 ATAAATAAACCAGTAAAATA
155630818 ATAAATAAA-CAGATAAAAT
1 ATAAATAAACCAG-TAAAAT
155630837 GATTTTGCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.64, C:0.08, G:0.05, T:0.23
Consensus pattern (20 bp):
ATAAATAAACCAGTAAAATA
Found at i:155630904 original size:40 final size:40
Alignment explanation
Indices: 155630843--155630992 Score: 167
Period size: 40 Copynumber: 3.7 Consensus size: 40
155630833 AAATGATTTT
*
155630843 GCGGCATTTTTCAAAAAGCGCCGCTAATGTTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGTTCGATCTATA
* * * * * *
155630883 GCAGCGTTTTTCATAAAGCGCCTCTAATGGTCGACCAATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGTTCGATCTATA
** * * *
155630923 TTGGCATTTTTTAAAAAAGCACCGCTAATGCTT-GATCTATA
1 GCGGC-GTTTTTCAAAAAGCGCCGCTAATG-TTCGATCTATA
155630964 GCGGCGTTTTTCAAAAAGCGCCGCTAATG
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATG
155630993 CCACTAAAGC
Statistics
Matches: 85, Mismatches: 23, Indels: 4
0.76 0.21 0.04
Matches are distributed among these distances:
40 56 0.66
41 28 0.33
42 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGTTCGATCTATA
Found at i:155632068 original size:24 final size:24
Alignment explanation
Indices: 155632036--155632083 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
155632026 GTTTGAATCT
155632036 AGCTAAATTAAAAAGCTAAAGCGA
1 AGCTAAATTAAAAAGCTAAAGCGA
*
155632060 AGCTAAATTGAAAAGCTAAAGCGA
1 AGCTAAATTAAAAAGCTAAAGCGA
155632084 TGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (24 bp):
AGCTAAATTAAAAAGCTAAAGCGA
Found at i:155636418 original size:94 final size:94
Alignment explanation
Indices: 155636302--155636476 Score: 305
Period size: 94 Copynumber: 1.9 Consensus size: 94
155636292 GATAAAAAGG
* *
155636302 GGATTTGATATATCCCTTATCAGATACGGAAATAGAATTTAATTATTATTTAAAAGAGTTCTATA
1 GGATTTGATATATCCCTTATCAGATAAGGAAATAGAATTTAATTATTATTTAAAAGAGTTCTAGA
155636367 TAAATAATAATTAAAATTCAAAATCAAAA
66 TAAATAATAATTAAAATTCAAAATCAAAA
* * *
155636396 GGATTTTATATATTCCTTATCAGATAAGGAAATAGAATTTAATTATTATTTAAAAGAGTTTTAGA
1 GGATTTGATATATCCCTTATCAGATAAGGAAATAGAATTTAATTATTATTTAAAAGAGTTCTAGA
155636461 TAAATAATAATTAAAA
66 TAAATAATAATTAAAA
155636477 CATAATTTAA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.37
Consensus pattern (94 bp):
GGATTTGATATATCCCTTATCAGATAAGGAAATAGAATTTAATTATTATTTAAAAGAGTTCTAGA
TAAATAATAATTAAAATTCAAAATCAAAA
Found at i:155638237 original size:51 final size:50
Alignment explanation
Indices: 155638171--155638279 Score: 173
Period size: 51 Copynumber: 2.2 Consensus size: 50
155638161 AACGGGCATG
*
155638171 AAAAAGGAAAAGAAAGGTATGTGTTCAAATGAACTATGTCATGAAATTAT
1 AAAAAGGAAAAGAAAGGTATGTATTCAAATGAACTATGTCATGAAATTAT
* *
155638221 AAAGAAGGAAAGGAAAGGTATGTATTCGAATGAACTATGTCATGAAATTAT
1 AAA-AAGGAAAAGAAAGGTATGTATTCAAATGAACTATGTCATGAAATTAT
*
155638272 GAAAAGGA
1 AAAAAGGA
155638280 TTGAAACAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 8 0.15
51 46 0.85
ACGTcount: A:0.48, C:0.06, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAAGGAAAAGAAAGGTATGTATTCAAATGAACTATGTCATGAAATTAT
Found at i:155645322 original size:19 final size:19
Alignment explanation
Indices: 155645298--155645395 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
155645288 AATCTTTAAG
155645298 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
155645317 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
155645336 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
155645353 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
155645372 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
155645393 GAT
1 GAT
155645396 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:155645328 original size:36 final size:36
Alignment explanation
Indices: 155645288--155645395 Score: 121
Period size: 36 Copynumber: 2.9 Consensus size: 36
155645278 ATGGAAATAT
*
155645288 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAAAGATATGCAATCTTAGATATGATATGC
* *
155645324 AATC-TTAAATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAAGAT-ATGCAATCTTAGATATGATATGC
155645360 AATC-TTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTTTA-A-A-GATATGCAATCTT--AGATATGAT
155645396 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
35 6 0.10
36 33 0.54
37 1 0.02
38 10 0.16
39 2 0.03
40 9 0.15
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTTAAAGATATGCAATCTTAGATATGATATGC
Found at i:155651070 original size:13 final size:13
Alignment explanation
Indices: 155651051--155651128 Score: 63
Period size: 14 Copynumber: 5.9 Consensus size: 13
155651041 CTTCTATTTC
*
155651051 AAAAAAAAAAAAGG
1 AAAAAGAAAAAA-G
155651065 AAAAA-AAGAAAAG
1 AAAAAGAA-AAAAG
155651078 AAAAAGAGAAAAA-
1 AAAAAGA-AAAAAG
* *
155651091 AAATAGAAAGAA-
1 AAAAAGAAAAAAG
*
155651103 AAAGAGAAAAAAG
1 AAAAAGAAAAAAG
155651116 AAAAAAGAAAAAA
1 -AAAAAGAAAAAA
155651129 TTAGAGAGGC
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
12 14 0.26
13 14 0.26
14 25 0.46
15 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.01
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:155651081 original size:22 final size:22
Alignment explanation
Indices: 155651052--155651128 Score: 54
Period size: 22 Copynumber: 3.5 Consensus size: 22
155651042 TTCTATTTCA
155651052 AAAAAAAAAAAGGAAAAAAA-GA
1 AAAAAAAAAAA-GAAAAAAAGGA
* *
155651074 AAAGAAAAAGAGAAAAAAA--A
1 AAAAAAAAAAAGAAAAAAAGGA
* *
155651094 TAGAAAGAAAAAGAGAAAAAA-GA
1 -AAAAAAAAAAAGA-AAAAAAGGA
155651117 AAAAAGAAAAAA
1 AAAAA-AAAAAA
155651129 TTAGAGAGGC
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
20 1 0.02
21 17 0.40
22 19 0.44
23 6 0.14
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (22 bp):
AAAAAAAAAAAGAAAAAAAGGA
Found at i:155651091 original size:23 final size:23
Alignment explanation
Indices: 155651065--155651127 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
155651055 AAAAAAAAGG
155651065 AAAAAAAGAAAAGAAAAAGAGAA
1 AAAAAAAGAAAAGAAAAAGAGAA
155651088 AAAAAATAG-AAAGAAAAAGAGAA
1 AAAAAA-AGAAAAGAAAAAGAGAA
*
155651111 AAAAGAA-AAAAGAAAAA
1 AAAAAAAGAAAAGAAAAA
155651128 ATTAGAGAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
22 10 0.27
23 25 0.68
24 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.02
Consensus pattern (23 bp):
AAAAAAAGAAAAGAAAAAGAGAA
Found at i:155651093 original size:31 final size:30
Alignment explanation
Indices: 155651053--155651121 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
155651043 TCTATTTCAA
*
155651053 AAAAAAAAAAGGAAAAAAAGAAAAGAAAAAGAG
1 AAAAAAAATA-GAAAAAAA-AAAAGAAAAA-AG
* *
155651086 AAAAAAAATAGAAAGAAAAAGAGAAAAAAG
1 AAAAAAAATAGAAAAAAAAAAAGAAAAAAG
155651116 AAAAAA
1 AAAAAA
155651122 GAAAAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 8 0.24
31 9 0.27
32 7 0.21
33 9 0.27
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.01
Consensus pattern (30 bp):
AAAAAAAATAGAAAAAAAAAAAGAAAAAAG
Done.