Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 504 of 770
Found at i:155891024 original size:11 final size:9
Alignment explanation
Indices: 155890986--155891040 Score: 56
Period size: 9 Copynumber: 5.7 Consensus size: 9
155890976 ATAAACATGG
155890986 TATGTATGA
1 TATGTATGA
*
155890995 TATGCACATGA
1 TATG--TATGA
*
155891006 CATGTATGA
1 TATGTATGA
155891015 TATGCATATGA
1 TATG--TATGA
155891026 TATGTATGA
1 TATGTATGA
155891035 TATGTA
1 TATGTA
155891041 CATGATGTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 22 0.58
11 16 0.42
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:155891046 original size:20 final size:20
Alignment explanation
Indices: 155890980--155891046 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
155890970 ATTTTGATAA
*
155890980 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
155891000 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
155891020 ATATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
155891040 ACATGAT
1 ACATGAT
155891047 GTAATCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:155891152 original size:24 final size:23
Alignment explanation
Indices: 155891096--155891262 Score: 210
Period size: 24 Copynumber: 7.0 Consensus size: 23
155891086 GAGGAAGTGA
155891096 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
155891119 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
155891142 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
155891166 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
155891190 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * *
155891213 AAAAAGGGCTTTTTCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
155891238 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
155891262 A
1 A
155891263 TGATAAAGCA
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
23 43 0.34
24 73 0.58
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:155891165 original size:47 final size:47
Alignment explanation
Indices: 155891096--155891262 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
155891086 GAGGAAGTGA
*
155891096 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
155891142 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * * *
155891190 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTTCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
155891238 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
155891263 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 63 0.59
48 31 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:155891212 original size:71 final size:71
Alignment explanation
Indices: 155891096--155891261 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
155891086 GAGGAAGTGA
* *
155891096 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
155891161 GTTATC
66 GTTATC
* * *
155891167 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTTCCCTA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
155891232 GTTATT
66 GTTATC
*
155891238 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
155891262 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:155897110 original size:40 final size:40
Alignment explanation
Indices: 155896983--155897112 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
155896973 ATGCTGGAAA
* *
155896983 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
155897023 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
155897063 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
155897103 TTATATCCGG
1 TTATATCCGG
155897113 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:155905128 original size:40 final size:40
Alignment explanation
Indices: 155905001--155905130 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
155904991 ATGCTGGAAA
* *
155905001 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
155905041 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
155905081 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
155905121 TTATATCCGG
1 TTATATCCGG
155905131 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:155908993 original size:80 final size:80
Alignment explanation
Indices: 155908909--155909057 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
155908899 TATGGTAACC
* * * *
155908909 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
155908973 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
155908989 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
155909054 CCGG
66 CCGG
155909058 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:155908999 original size:40 final size:38
Alignment explanation
Indices: 155908950--155909057 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
155908940 ATCACGATTT
*
155908950 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
155908990 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
155909030 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
155909058 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:155917109 original size:80 final size:80
Alignment explanation
Indices: 155917025--155917173 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
155917015 TATGGTAACC
* * * *
155917025 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
155917089 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
155917105 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
155917170 CCGG
66 CCGG
155917174 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:155917115 original size:40 final size:38
Alignment explanation
Indices: 155917066--155917173 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
155917056 ATCACGATTT
*
155917066 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
155917106 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
155917146 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
155917174 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:155925323 original size:28 final size:28
Alignment explanation
Indices: 155925291--155925389 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
155925281 GCAATAAGCC
*
155925291 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
155925319 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
155925347 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
155925376 CGCACACTTAGTGC
1 CGCACACTTAGTGC
155925390 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:155926781 original size:48 final size:48
Alignment explanation
Indices: 155926705--155926814 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
155926695 GGCTGTCACA
* * *
155926705 TACATGAGATCAAATATAGACGCTAATGCCATGTCCCATACATGGTCT
1 TACATGAGATCACATATAGACGCCAATGCCATGTCCCAGACATGGTCT
* *
155926753 TACATGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCT
1 TACATGAGATCACATATAGACGCCAATGCCATGTCCCAGACATGGTCT
* *
155926801 AACATGGGATCACA
1 TACATGAGATCACA
155926815 CATAACCCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (48 bp):
TACATGAGATCACATATAGACGCCAATGCCATGTCCCAGACATGGTCT
Found at i:155928049 original size:20 final size:20
Alignment explanation
Indices: 155928024--155928071 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
155928014 TCGGGATGTT
155928024 ACACGGGCTTGTCCCAAGCC
1 ACACGGGCTTGTCCCAAGCC
155928044 ACACGGGCTTGTCCCAAGCC
1 ACACGGGCTTGTCCCAAGCC
155928064 ACACGGGC
1 ACACGGGC
155928072 ATGTGATCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.40, G:0.27, T:0.12
Consensus pattern (20 bp):
ACACGGGCTTGTCCCAAGCC
Found at i:155933297 original size:12 final size:12
Alignment explanation
Indices: 155933280--155933309 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
155933270 GTGTAAACGC
155933280 CCATGTGCTAGG
1 CCATGTGCTAGG
*
155933292 CCATGTGTTAGG
1 CCATGTGCTAGG
155933304 CCATGT
1 CCATGT
155933310 AACAACCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:155934218 original size:40 final size:41
Alignment explanation
Indices: 155934158--155934461 Score: 317
Period size: 41 Copynumber: 7.5 Consensus size: 41
155934148 CATCCAATGC
* * *
155934158 TACCGAAGTACAAATAGGGGCGTGTATGTGCAA-TCAGGGG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* * ** * * * *
155934198 TACCAAAGTACAAATAGGGGCGCGTACGTGTAATTCAGGTG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* * *
155934239 TACCAAAGTAGAAACAGGGGCATGTATGTGCAATTTAGGGG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* * ** *
155934280 TACTGAAGTACAAAAAAGGGCACATATGTGTAATTTA-GGG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* * *
155934320 TACTGATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* ** *
155934361 TACCGAAGTACAAAAAAGGGCACATATGTGTAATTTA-GGG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
* * *
155934401 TACTGATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
*
155934442 TACCGAAGTACAAACAGGGG
1 TACCGAAGTACAAAAAGGGG
155934462 TACTGAAGTA
Statistics
Matches: 217, Mismatches: 44, Indels: 5
0.82 0.17 0.02
Matches are distributed among these distances:
40 97 0.45
41 120 0.55
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (41 bp):
TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGGG
Found at i:155934270 original size:81 final size:81
Alignment explanation
Indices: 155934158--155934455 Score: 400
Period size: 81 Copynumber: 3.7 Consensus size: 81
155934148 CATCCAATGC
* * * * * * * * *
155934158 TACCGAAGTACAAATAGGGGCGTGTATGTGCAA-TCAGGGGTACCAAAGTACAAATAGGGGCGCG
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
* *
155934222 TACGTGTAATTCAGGTG
66 TATGTGTAATTTAGG-G
* * * * *
155934239 TACCAAAGTAGAAACAGGGGCATGTATGTGCAATTTAGGGGTACTGAAGTACAAAAAAGGGCACA
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
155934304 TATGTGTAATTTAGGG
66 TATGTGTAATTTAGGG
* *
155934320 TACTGATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
155934385 TATGTGTAATTTAGGG
66 TATGTGTAATTTAGGG
* *
155934401 TACTGATGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
1 TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAA
155934456 CAGGGGTACT
Statistics
Matches: 196, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 159 0.81
82 37 0.19
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.23
Consensus pattern (81 bp):
TACCGAAGTACAAAAAGGGGCATGTATGTGCAATTTAGGAGTACCGAAGTACAAAAAAGGGCACA
TATGTGTAATTTAGGG
Found at i:155934469 original size:20 final size:20
Alignment explanation
Indices: 155934441--155934481 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
155934431 CAATTTAGGA
*
155934441 GTACCGAAGTACAAACAGGG
1 GTACCGAAGTAAAAACAGGG
* *
155934461 GTACTGAAGTAAAAATAGGG
1 GTACCGAAGTAAAAACAGGG
155934481 G
1 G
155934482 CATGTCTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15
Consensus pattern (20 bp):
GTACCGAAGTAAAAACAGGG
Found at i:155937689 original size:57 final size:57
Alignment explanation
Indices: 155937572--155937711 Score: 171
Period size: 57 Copynumber: 2.5 Consensus size: 57
155937562 GTGTAGCTTT
*
155937572 GGCTTCCTTTAACAGAGATAGCAACAAAGGCTCCCTTTTAACAAAGATTACCACAAA
1 GGCTTCCTTTAACAGAGATAGCCACAAAGGCTCCCTTTTAACAAAGATTACCACAAA
* * * * *
155937629 GGCTTCCATTTAACAGAGATAACCACAAAGGCT-TCTTTTGACAAAGA-TAGCCATAGA
1 GGCTTCC-TTTAACAGAGATAGCCACAAAGGCTCCCTTTTAACAAAGATTA-CCACAAA
*
155937686 GGCTT--TTTAACAGAGATCGCCACAAA
1 GGCTTCCTTTAACAGAGATAGCCACAAA
155937712 AGTTTCCATT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
54 19 0.26
56 2 0.03
57 29 0.40
58 23 0.32
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (57 bp):
GGCTTCCTTTAACAGAGATAGCCACAAAGGCTCCCTTTTAACAAAGATTACCACAAA
Found at i:155937702 original size:26 final size:28
Alignment explanation
Indices: 155937572--155937744 Score: 136
Period size: 29 Copynumber: 6.1 Consensus size: 28
155937562 GTGTAGCTTT
* *
155937572 GGCTTCCTTTAACAGAGATAGCAACAAA
1 GGCTTCTTTTAACAGAGATAGCCACAAA
* *
155937600 GGCTCCCTTTTAACAAAGATTA-CCACAAA
1 GGCT-TCTTTTAACAGAGA-TAGCCACAAA
* *
155937629 GGCTTCCATTTAACAGAGATAACCACAAA
1 GGCTT-CTTTTAACAGAGATAGCCACAAA
* * * *
155937658 GGCTTCTTTTGACAAAGATAGCCATAGA
1 GGCTTCTTTTAACAGAGATAGCCACAAA
*
155937686 GGC-T-TTTTAACAGAGATCGCCACAAA
1 GGCTTCTTTTAACAGAGATAGCCACAAA
* * * * * *
155937712 AGTTTCCATTTAATAAATATAGCCACAAA
1 GGCTT-CTTTTAACAGAGATAGCCACAAA
155937741 GGCT
1 GGCT
155937745 AACTTAAATA
Statistics
Matches: 111, Mismatches: 27, Indels: 13
0.74 0.18 0.09
Matches are distributed among these distances:
26 18 0.16
27 2 0.02
28 26 0.23
29 63 0.57
30 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (28 bp):
GGCTTCTTTTAACAGAGATAGCCACAAA
Found at i:155940338 original size:29 final size:29
Alignment explanation
Indices: 155940248--155940407 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
155940238 AATCGATTTC
* * **
155940248 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
155940277 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
155940305 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
155940335 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
155940364 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
155940393 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
155940408 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:155948416 original size:29 final size:29
Alignment explanation
Indices: 155948326--155948485 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
155948316 ACTCGATTTC
* * **
155948326 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
155948355 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
155948383 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
155948413 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
155948442 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
155948471 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
155948486 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:155968194 original size:28 final size:28
Alignment explanation
Indices: 155968125--155968225 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
155968115 GACAAGATTG
* * * *
155968125 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
155968155 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
155968183 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
155968212 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
155968226 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:155968369 original size:25 final size:25
Alignment explanation
Indices: 155968341--155968391 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
155968331 AAAATATGTT
155968341 CATGCTCGGGGTTGAATTTGGTAAG
1 CATGCTCGGGGTTGAATTTGGTAAG
155968366 CATGCTCGGGGTTGAATTTGGTAAG
1 CATGCTCGGGGTTGAATTTGGTAAG
155968391 C
1 C
155968392 CTTAAATCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.14, G:0.35, T:0.31
Consensus pattern (25 bp):
CATGCTCGGGGTTGAATTTGGTAAG
Found at i:155971432 original size:27 final size:26
Alignment explanation
Indices: 155971397--155971505 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
155971387 AGCATGGCTG
** *
155971397 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
155971423 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
155971451 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
155971478 CCA-AATCAGATAATTATGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGGCAGAGCCA
155971505 C
1 C
155971506 TAGGACGCTT
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.11
27 49 0.67
28 16 0.22
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:155971461 original size:54 final size:54
Alignment explanation
Indices: 155971397--155971505 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
155971387 AGCATGGCTG
* * * *
155971397 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCATGGCAGAGCCA
* * *
155971451 CCAGAACAGATATATGTGGCAGAGCCACCAAATCAGATAATTATGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCATGGCAGAGCCA
155971505 C
1 C
155971506 TAGGACGCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 31 0.66
55 16 0.34
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCATGGCAGAGCCA
Found at i:155986505 original size:15 final size:15
Alignment explanation
Indices: 155986482--155986513 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
155986472 GACAACTCAG
155986482 TTTTGTTTTCAATCT
1 TTTTGTTTTCAATCT
*
155986497 TTTTTTTTTCAATCT
1 TTTTGTTTTCAATCT
155986512 TT
1 TT
155986514 ATAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTGTTTTCAATCT
Found at i:155987551 original size:27 final size:27
Alignment explanation
Indices: 155987516--155987627 Score: 86
Period size: 27 Copynumber: 4.1 Consensus size: 27
155987506 AGCATGGCTG
* *
155987516 CCAGAACAGAAAAT-GTGATAGAGTCA
1 CCAGAACAGAAAATCGTGACAGAGCCA
* *
155987542 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGAAAATCGTGACAGAGCCA
*
155987570 CCAGAACAGATATAA--GTGGCAGAGCCA
1 CCAGAACAGA-A-AATCGTGACAGAGCCA
* * * * *
155987597 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAAATCGTGACAGAGCCA
155987624 CCAG
1 CCAG
155987628 GACACTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.03
26 5 0.07
27 49 0.68
28 14 0.19
29 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGAAAATCGTGACAGAGCCA
Found at i:155987576 original size:54 final size:54
Alignment explanation
Indices: 155987516--155987627 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
155987506 AGCATGGCTG
* *
155987516 CCAGAACAGA-A-AATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATAA-GTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
155987570 CCAGAACAGATATAAGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATAAGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
155987624 CCAG
1 CCAG
155987628 GACACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 33 0.65
55 16 0.31
56 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATAAGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:155991277 original size:28 final size:29
Alignment explanation
Indices: 155991212--155991312 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
155991202 ATAGTGAATC
155991212 CGCACACTTAGTGCTATATACATTC-AACT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
155991241 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
155991269 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
155991299 CGCACACTTAGTGC
1 CGCACACTTAGTGC
155991313 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:155999190 original size:28 final size:29
Alignment explanation
Indices: 155999125--155999225 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
155999115 ATAGTGAATC
155999125 CGCACACTTAGTGCTATATACATTC-AACT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
155999154 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
155999182 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
155999212 CGCACACTTAGTGC
1 CGCACACTTAGTGC
155999226 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:156001448 original size:40 final size:40
Alignment explanation
Indices: 156001287--156001450 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
156001277 AGAAATTGAA
* * * **
156001287 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * *
156001326 ATATCC-GGTTAAGACCCGAAGGCA-ATGTGCTAGTG-GT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
156001363 ATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
156001403 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
156001443 ATATCCGG
1 ATATCCGG
156001451 TTATATTCCG
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
37 7 0.07
38 27 0.27
39 23 0.23
40 42 0.42
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:156009815 original size:40 final size:40
Alignment explanation
Indices: 156009760--156009890 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
156009750 AACATTGGAA
156009760 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
156009800 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
156009839 ACCAAATTCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATA-TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
156009881 CTATATCCGG
1 ATATATCCGG
156009891 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
39 2 0.03
40 41 0.58
41 28 0.39
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:156012475 original size:29 final size:29
Alignment explanation
Indices: 156012442--156012515 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
156012432 GTTGTGAGAT
* * *
156012442 TGGCACTAAGTATGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
156012471 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
156012500 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
156012516 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:156014425 original size:22 final size:22
Alignment explanation
Indices: 156014380--156014426 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
156014370 GTTGCTGTGA
*
156014380 TGTTTACGGCTATGTGCTATCC
1 TGTTTACGGCTATGTGCTACCC
*
156014402 TGTTTACGGCTATGTGCTGCCC
1 TGTTTACGGCTATGTGCTACCC
156014424 TGT
1 TGT
156014427 CTACTGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.23, G:0.26, T:0.40
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTACCC
Found at i:156015468 original size:27 final size:23
Alignment explanation
Indices: 156015418--156015464 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
156015408 ATTTATTCAG
156015418 TGTAGGTTCTGGAAATCAGATTT
1 TGTAGGTTCTGGAAATCAGATTT
156015441 TGTAGGTTCTGGAAATCAGATTT
1 TGTAGGTTCTGGAAATCAGATTT
156015464 T
1 T
156015465 TTTTAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (23 bp):
TGTAGGTTCTGGAAATCAGATTT
Found at i:156017190 original size:27 final size:27
Alignment explanation
Indices: 156017141--156017221 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
156017131 AAGCTCATAT
* * *
156017141 CTGTAGGCTAGCATTACTTAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
156017168 CTGTAGGGTAGAATTGCTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
156017195 CTGTAGGGTAGAATTACGGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
156017222 TTGGTTTACA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:156017422 original size:81 final size:81
Alignment explanation
Indices: 156017206--156017599 Score: 323
Period size: 81 Copynumber: 4.9 Consensus size: 81
156017196 TGTAGGGTAG
* * * * * * * * *
156017206 AATTACGGAAATACCCTTGGTTTACAAAATTA-CTAAATACCCTTGGTTTACAAAATTACCAAAA
1 AATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGAAA
*
156017270 TACCCTCAATTAGTAA
66 TACCCTCAATTTGTAA
* * * * * * * *
156017286 AATTAC-CAAATGCCCGT-GGTTTGTAAAATTAACAAAACACCCTTAATTTGTAAAATTATCGAA
1 AATTACTGAAATACCC-TCGATTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGAA
* *
156017349 ATACCCTCGACTTGTAA
65 ATACCCTCAATTTGTAA
* *
156017366 AATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTGGAAAATTATCGAAA
1 AATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGAAA
* *
156017431 TACCCTTAATTTTTAA
66 TACCCTCAATTTGTAA
** *** * * * *
156017447 AATTACCAAAATACCC-CTGATTCGGAAAATCACCGAAATACCCTTGATTTGGAAAATTATAGAA
1 AATTACTGAAATACCCTC-GATTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGAA
*
156017511 ATA-CCTCTAATTTATAA
65 ATACCCTC-AATTTGTAA
* * * * * * * *
156017528 AATTA-TAGAAGTACCATTGACTTTAAAAAATTACAAAAATACCATTGCTTTGCAAAATTACCGA
1 AATTACT-GAAATACCCTCGA-TTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGA
156017592 AATACCCT
64 AATACCCT
156017600 TGGTTTGTAG
Statistics
Matches: 249, Mismatches: 55, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
79 19 0.08
80 55 0.22
81 136 0.55
82 36 0.14
83 3 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTGCAAAATTATCGAAA
TACCCTCAATTTGTAA
Found at i:156017606 original size:27 final size:27
Alignment explanation
Indices: 156017206--156017627 Score: 292
Period size: 27 Copynumber: 15.7 Consensus size: 27
156017196 TGTAGGGTAG
* * **
156017206 AATTACGGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * **
156017233 AATTA-CTAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* ** *
156017259 AATTACCAAAATACCCTCAATTAGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017286 AATTACC-AAATGCCCGTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
156017312 AATTAACAAAACACCCTTAATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017339 AATTATCGAAATACCCTCGACTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017366 AATTACTGAAATACCCTCGATTTATAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017393 AATTACCAAAATACCCTCGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017420 AATTATCGAAATACCCTTAATTTTTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
156017447 AATTACCAAAATACCCCTGATTCGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
156017474 AATCACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
** * *
156017501 AATTATAGAAATA-CCTCTAATTTATAA
1 AATTACCGAAATACCCT-TGATTTGTAA
** * * **
156017528 AATTATAGAAGTACCATTGACTTTAAAA
1 AATTACCGAAATACCCTTGA-TTTGTAA
** * * *
156017556 AATTACAAAAATACCATTGCTTTGCAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
156017583 AATTACCGAAATACCCTTGGTTTGTAG
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
156017610 ATTTACCAAAACACCCTT
1 AATTACCGAAATACCCTT
156017628 AGAGGGTGAA
Statistics
Matches: 313, Mismatches: 77, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
26 46 0.15
27 243 0.78
28 24 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:156017867 original size:18 final size:18
Alignment explanation
Indices: 156017844--156017881 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
156017834 CATGGGTGGG
156017844 GATTATGAAACGGAGGAA
1 GATTATGAAACGGAGGAA
*
156017862 GATTATGAAATGGAGGAA
1 GATTATGAAACGGAGGAA
156017880 GA
1 GA
156017882 AATTGAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.34, T:0.18
Consensus pattern (18 bp):
GATTATGAAACGGAGGAA
Found at i:156017940 original size:41 final size:41
Alignment explanation
Indices: 156017883--156018005 Score: 201
Period size: 41 Copynumber: 3.0 Consensus size: 41
156017873 GGAGGAAGAA
156017883 ATTGAGGATCGTATGGTTGCTTGATGACTGTGGATCCACCG
1 ATTGAGGATCGTATGGTTGCTTGATGACTGTGGATCCACCG
* *
156017924 ATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACCG
1 ATTGAGGATCGTATGGTTGCTTGATGACTGTGGATCCACCG
* * *
156017965 ATTAAGGATCGTATGGTTGCTTGATGACCGTGGATCTACCG
1 ATTGAGGATCGTATGGTTGCTTGATGACTGTGGATCCACCG
156018006 GTGGCTGTTA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (41 bp):
ATTGAGGATCGTATGGTTGCTTGATGACTGTGGATCCACCG
Found at i:156018189 original size:22 final size:22
Alignment explanation
Indices: 156018146--156018211 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
156018136 AGCCAATTAT
* * **
156018146 CCTGATTATGGCTTTGCACCAA
1 CCTGATGATGGCTATGTGCCAA
156018168 CCT-ATAGATGGCTATGTGCCAA
1 CCTGAT-GATGGCTATGTGCCAA
* *
156018190 CCTGATTATGGCTGTGTGCCAA
1 CCTGATGATGGCTATGTGCCAA
156018212 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (22 bp):
CCTGATGATGGCTATGTGCCAA
Found at i:156018465 original size:22 final size:22
Alignment explanation
Indices: 156018422--156018466 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
156018412 GATGTTTACA
*
156018422 GCTATGTGCTCTCCTATTTACG
1 GCTATGTGCTCTCCTATCTACG
*
156018444 GCTATGTGCT-TCCCTGTCTACG
1 GCTATGTGCTCT-CCTATCTACG
156018466 G
1 G
156018467 GGTTGAGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.11, C:0.29, G:0.22, T:0.38
Consensus pattern (22 bp):
GCTATGTGCTCTCCTATCTACG
Found at i:156026414 original size:11 final size:11
Alignment explanation
Indices: 156026398--156026428 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
156026388 TTCGCATATC
156026398 ACAGTTTCACT
1 ACAGTTTCACT
156026409 ACAGTTTCACT
1 ACAGTTTCACT
156026420 ACAGTTTCA
1 ACAGTTTCA
156026429 ATTTACCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (11 bp):
ACAGTTTCACT
Found at i:156026567 original size:14 final size:15
Alignment explanation
Indices: 156026542--156026570 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
156026532 TCGGTAGACC
156026542 ACACATTCAAAAATA
1 ACACATTCAAAAATA
156026557 ACACA-TCAAAAATA
1 ACACATTCAAAAATA
156026571 CTTTTCAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.21, G:0.00, T:0.17
Consensus pattern (15 bp):
ACACATTCAAAAATA
Found at i:156030155 original size:46 final size:44
Alignment explanation
Indices: 156030088--156030261 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 44
156030078 TGTAACCCGC
*
156030088 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TT-GCAT
* *
156030134 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTTGCAT
* *** * *
156030180 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTGCAT
*
156030226 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
156030262 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
44 1 0.01
45 30 0.28
46 45 0.42
47 28 0.26
48 2 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTGCAT
Found at i:156030253 original size:92 final size:93
Alignment explanation
Indices: 156030095--156030266 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 93
156030085 CGCCCATAAG
* *
156030095 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
156030160 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
156030188 CGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
156030252 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
156030267 CAAATATCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 44 0.59
93 31 0.41
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:156030280 original size:45 final size:44
Alignment explanation
Indices: 156030139--156030280 Score: 116
Period size: 45 Copynumber: 3.1 Consensus size: 44
156030129 CGCATCCATA
* * *
156030139 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ATATC-C
156030187 --TCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCC-ATA---
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--A-TGC--CCAATATCC
156030231 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AATATCC
156030276 AGTGA
1 AGTGA
156030281 CATGTCACTT
Statistics
Matches: 78, Mismatches: 3, Indels: 29
0.71 0.03 0.26
Matches are distributed among these distances:
40 2 0.03
42 6 0.08
43 1 0.01
45 33 0.42
46 2 0.03
47 27 0.35
48 2 0.03
49 1 0.01
50 3 0.04
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATATCC
Found at i:156032679 original size:30 final size:30
Alignment explanation
Indices: 156032635--156032723 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
156032625 CAAAGATAAC
156032635 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
156032664 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
156032694 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
156032724 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:156032683 original size:15 final size:15
Alignment explanation
Indices: 156032635--156032714 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
156032625 CAAAGATAAC
*
156032635 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
156032649 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
156032664 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
156032679 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
156032694 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
156032709 AAGAAA
1 AAGAAA
156032715 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:156032723 original size:15 final size:15
Alignment explanation
Indices: 156032646--156032723 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
156032636 AGAAAACCGA
156032646 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
156032661 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
156032675 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
156032690 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
156032706 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
156032721 ATA
1 ATA
156032724 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:156035685 original size:46 final size:45
Alignment explanation
Indices: 156035618--156035792 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
156035608 TGTAACCCGC
* *
156035618 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
156035664 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
156035710 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
156035757 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
156035793 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 32 0.30
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:156035737 original size:93 final size:93
Alignment explanation
Indices: 156035625--156035797 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
156035615 CGCCCATAAG
*
156035625 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
156035689 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
* *
156035718 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
156035783 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
156035798 CAAATATCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:156039361 original size:29 final size:29
Alignment explanation
Indices: 156039319--156039459 Score: 255
Period size: 29 Copynumber: 4.9 Consensus size: 29
156039309 GCCGTATTTT
**
156039319 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
156039348 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
156039377 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
*
156039406 TTTCCAGCACGCACACTTAGTGCCATAAA
1 TTTCCAGCACGCACACTTAGTGCCATATA
156039435 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
156039460 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 109 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.28
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:156043479 original size:29 final size:29
Alignment explanation
Indices: 156043451--156043606 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
156043441 CCTCCGAGCT
** * * *
156043451 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
156043480 TGCACACTTAGTG-C--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156043506 --CACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156043533 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156043562 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156043591 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
156043607 ATCTCGTCAC
Statistics
Matches: 117, Mismatches: 5, Indels: 10
0.89 0.04 0.08
Matches are distributed among these distances:
24 11 0.09
25 1 0.01
26 10 0.09
27 12 0.10
28 1 0.01
29 82 0.70
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:156043493 original size:58 final size:55
Alignment explanation
Indices: 156043393--156043606 Score: 211
Period size: 58 Copynumber: 3.8 Consensus size: 55
156043383 TACTCGATTT
* * ** **
156043393 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATACCCTCCGAGC
1 CGCACACTTAGTGCCA--TATATTTCCAGCACGCACACTTAGTGCCATA-TTTCC-AGC
** * * **
156043450 TCGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTG-CATATTTCCAG-
1 -CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATTTCCAGC
*
156043504 CACACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGC
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC--ATATTTCCAGC
156043561 ACGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 -CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
156043607 ATCTCGTCAC
Statistics
Matches: 130, Mismatches: 19, Indels: 16
0.79 0.12 0.10
Matches are distributed among these distances:
53 35 0.27
54 1 0.01
55 2 0.02
56 16 0.12
57 7 0.05
58 69 0.53
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATTTCCAGC
Found at i:156043537 original size:111 final size:110
Alignment explanation
Indices: 156043395--156043604 Score: 244
Period size: 111 Copynumber: 1.9 Consensus size: 110
156043385 CTCGATTTCG
* * *
156043395 CACACTTAGTGCCACGTAATTTAAGCCCGCACACACAGTGCCATA-CCCTCCGAGCTCGCACACC
1 CACACTTAGTGCCAC-TAATTTAAGCACGCACACACAGTGCCATATACCTCC-AGCACGCACACC
* * **
156043459 CAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCATATTTCCAGCA
64 CAGTGCCATATATTTCCAGCACGCACACTTAGTGCATATTTCCAGCA
* ** ** *
156043506 CACACTTAGTGCCA-TATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACT
1 CACACTTAGTGCCACTA-ATTT-AAGCACGCACACACAGTGCCATATACCTCCAGCACGCACACC
*
156043570 TAGTGCCATATATTTCCAGCACGCACACTTAGTGC
64 CAGTGCCATATATTTCCAGCACGCACACTTAGTGC
156043605 CAATCTCGTC
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
109 2 0.02
110 4 0.05
111 73 0.89
112 3 0.04
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (110 bp):
CACACTTAGTGCCACTAATTTAAGCACGCACACACAGTGCCATATACCTCCAGCACGCACACCCA
GTGCCATATATTTCCAGCACGCACACTTAGTGCATATTTCCAGCA
Found at i:156051555 original size:41 final size:41
Alignment explanation
Indices: 156051510--156051627 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
156051500 TGAAAGATAA
156051510 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
156051551 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
156051581 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
156051622 ATGTAG
1 ATGTAG
156051628 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:156051594 original size:71 final size:71
Alignment explanation
Indices: 156051478--156051641 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
156051468 NAGATGTATC
156051478 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
156051543 AGGACA
66 AGGACA
156051549 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
156051614 AGGACA
66 AGGACA
156051620 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
156051642 AGACAAATGG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:156059118 original size:41 final size:41
Alignment explanation
Indices: 156059073--156059190 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
156059063 TGAAAGATAA
156059073 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
156059114 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
156059144 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
156059185 ATGTAG
1 ATGTAG
156059191 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:156059129 original size:71 final size:71
Alignment explanation
Indices: 156059041--156059204 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
156059031 GAGATGTATC
156059041 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
156059106 AGGACA
66 AGGACA
156059112 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
156059177 AGGACA
66 AGGACA
156059183 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
156059205 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:156061844 original size:30 final size:30
Alignment explanation
Indices: 156061797--156061856 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
156061787 TTCCCGAGCC
156061797 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* * *
156061827 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
156061857 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:156062578 original size:50 final size:50
Alignment explanation
Indices: 156062503--156062646 Score: 191
Period size: 50 Copynumber: 2.9 Consensus size: 50
156062493 AGCTATTGTG
** ***
156062503 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
*
156062553 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGACAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
* * * *
156062603 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
156062647 TAGCTTCGGC
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 39 0.47
50 44 0.53
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAATT
Found at i:156065419 original size:16 final size:15
Alignment explanation
Indices: 156065388--156065419 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
156065378 TCGTATCATA
156065388 GATTTCTTTATCTTG
1 GATTTCTTTATCTTG
156065403 GATTTCTTTATTCTTG
1 GATTTCTTTA-TCTTG
156065419 G
1 G
156065420 CTTCTCTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.59
Consensus pattern (15 bp):
GATTTCTTTATCTTG
Found at i:156068230 original size:50 final size:50
Alignment explanation
Indices: 156068155--156068300 Score: 204
Period size: 50 Copynumber: 2.9 Consensus size: 50
156068145 AGCTATTGTG
* **
156068155 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
156068205 AGGTCACGTGTGTGGTACTAAGTGCAGACTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
156068255 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
156068301 GCTTCGGCTA
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 40 0.47
50 45 0.53
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:156069499 original size:9 final size:9
Alignment explanation
Indices: 156069485--156069514 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
156069475 TGGTTGGTAA
156069485 TAAGTTGTT
1 TAAGTTGTT
156069494 TAAGTTGTT
1 TAAGTTGTT
156069503 TAAGTTGTT
1 TAAGTTGTT
156069512 TAA
1 TAA
156069515 TTGATGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (9 bp):
TAAGTTGTT
Found at i:156071135 original size:43 final size:43
Alignment explanation
Indices: 156070964--156071123 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 43
156070954 TCACATATAT
* **
156070964 CATA-CAATGCCAACGTCCCAGACGTGGTCTTACTTGCAATCA
1 CATATCAATGCCAACGTCCCAAACGTGGTCTTACACGCAATCA
* *
156071006 CATATCAATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AACCA
1 CATATCAATGCCAAC-GTCCCAAAC-GTGGTCTTACACGCAATCA
* * * * * * * *
156071048 AATA-CGATACCAATGTCCCGAACATGGTCTTACACGTATTCA
1 CATATCAATGCCAACGTCCCAAACGTGGTCTTACACGCAATCA
*
156071090 CATATCAATGCCAACATCCCAAACGTGGTCTTAC
1 CATATCAATGCCAACGTCCCAAACGTGGTCTTAC
156071124 TCGAGAACAC
Statistics
Matches: 92, Mismatches: 19, Indels: 13
0.74 0.15 0.10
Matches are distributed among these distances:
41 23 0.25
42 20 0.22
43 48 0.52
44 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (43 bp):
CATATCAATGCCAACGTCCCAAACGTGGTCTTACACGCAATCA
Found at i:156080068 original size:25 final size:25
Alignment explanation
Indices: 156080002--156080078 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 25
156079992 GATTTATCAG
**
156080002 TTACCAAT-TTCAACTCATATGAGC
1 TTACCAATATTCAACTCGCATGAGC
* *
156080026 TTACCAATACTCAGCTCGCATGAGC
1 TTACCAATATTCAACTCGCATGAGC
* * *
156080051 TTACCATTATTCAACTCGGAAGAGC
1 TTACCAATATTCAACTCGCATGAGC
156080076 TTA
1 TTA
156080079 TCGTTTACAG
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 8 0.19
25 35 0.81
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (25 bp):
TTACCAATATTCAACTCGCATGAGC
Found at i:156081896 original size:34 final size:34
Alignment explanation
Indices: 156081853--156081929 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 34
156081843 AGTTGTAGTC
156081853 CAGTATCAGTGTGGGCCCTAGCCCATTACAATAA
1 CAGTATCAGTGTGGGCCCTAGCCCATTACAATAA
** *
156081887 CAGTATCAGTGTGGGCTTTAGCCCATTACGATAA
1 CAGTATCAGTGTGGGCCCTAGCCCATTACAATAA
*
156081921 TAGTATCAG
1 CAGTATCAG
156081930 AAAATACAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCCTAGCCCATTACAATAA
Found at i:156090338 original size:40 final size:42
Alignment explanation
Indices: 156090289--156090514 Score: 167
Period size: 40 Copynumber: 5.6 Consensus size: 42
156090279 GACTGGCTCG
* * * *
156090289 ATTGTCTTCGGGACATT-GCCCTG-TTATAGTGATTCGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGATT-TAGTAACTCGCACGA
156090329 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCGCACGA
* *
156090370 A-TGCCTTCGGGAC-TTAACCCGG-TTTTGATAACTCGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGATTTAG-TAACTCGCACGA
* * *
156090409 AATGCCTTCGGGAC-TTAACCCGG-TTTTGATAACTCGCAC-A
1 ATTGCCTTCGGGACATTAGCCCGGATTTAG-TAACTCGCACGA
* ** *
156090449 AATGCCTTCGGGA-ATT-GACCCGGATTTAGTCAGTTAGCAC-A
1 ATTGCCTTCGGGACATTAG-CCCGGATTTAGT-AACTCGCACGA
**
156090490 AAAGCCTTCGGGAC-TTAGCCCGGAT
1 ATTGCCTTCGGGACATTAGCCCGGAT
156090515 ACCATTCGAA
Statistics
Matches: 162, Mismatches: 12, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
39 9 0.06
40 116 0.72
41 36 0.22
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (42 bp):
ATTGCCTTCGGGACATTAGCCCGGATTTAGTAACTCGCACGA
Found at i:156090512 original size:41 final size:41
Alignment explanation
Indices: 156090322--156090514 Score: 225
Period size: 40 Copynumber: 4.8 Consensus size: 41
156090312 TTATAGTGAT
* *
156090322 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAG-TAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGATAAC
* * *
156090362 TCGCACGAATGCCTTCGGGACTTAACCCGG-TTTTGATAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGATAAC
* *
156090402 TCGCACAAATGCCTTCGGGACTTAACCCGG-TTTTGATAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGATAAC
* **
156090442 TCGCACAAATGCCTTCGGGAATT-GACCCGGATTTAG-TCAGT
1 TCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGAT-AAC
* *
156090483 TAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
156090515 ACCATTCGAA
Statistics
Matches: 134, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 4 0.03
40 97 0.72
41 32 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGATAAC
Found at i:156101412 original size:40 final size:40
Alignment explanation
Indices: 156101357--156101577 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
156101347 TATTCGGATG
156101357 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
156101397 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
156101440 ATACCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
156101479 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
156101519 ATATCCGGGCTAAGACCCGAAGGCA-TT-TGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
156101557 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
156101578 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
37 13 0.08
38 14 0.09
39 20 0.12
40 78 0.48
41 1 0.01
42 16 0.10
43 20 0.12
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:156101499 original size:82 final size:79
Alignment explanation
Indices: 156101361--156101577 Score: 264
Period size: 82 Copynumber: 2.7 Consensus size: 79
156101351 CGGATGATAT
* **
156101361 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
156101426 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
*
156101444 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
156101509 GCTAGTGACTATAT
66 GCTAGTGACTATAC
* * *
156101523 CCGGGCTAAGACCCGAAGGCA-TT-TGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
156101578 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
77 14 0.11
78 15 0.12
79 22 0.18
80 9 0.07
82 52 0.42
83 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:156109580 original size:40 final size:40
Alignment explanation
Indices: 156109441--156109661 Score: 254
Period size: 40 Copynumber: 5.5 Consensus size: 40
156109431 TATTCGGATG
* *
156109441 ATATCCGGGCT-AGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
156109480 ATATCCGGGCT-AGT-CCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-G--ACT
* * *
156109521 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
** *
156109561 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
156109601 ATATCCGGGCTAAGACCTGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
*
156109641 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
156109662 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 19 0.12
39 26 0.17
40 74 0.47
41 14 0.09
42 4 0.03
43 19 0.12
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:156121967 original size:40 final size:40
Alignment explanation
Indices: 156121908--156122114 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
156121898 CATTGGAATG
* * * *
156121908 ATATCCGGGCTAAGTCCCGAAGGAAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
*
156121948 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * **
156121987 ATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
156122027 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
156122067 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
156122107 ATATCCGG
1 ATATCCGG
156122115 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 35 0.26
40 102 0.74
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:156122117 original size:79 final size:79
Alignment explanation
Indices: 156121912--156122118 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
156121902 GGAATGATAT
* * * * *
156121912 CCGGGCTAAGTCCCGAAGGAAATTGTGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
** *
156121977 TGCGAGTGTTATAT
66 TGCGAGTACTATAA
* * ** *
156121991 CCGGGC-TAATACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTTAGT-CCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGC-ATT
156122055 -GTGCGAGTCACTATAA
64 CGTGCGAGT-ACTATAA
* * * *
156122071 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATTATATCC-GGTTAA
1 CCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAA
156122119 ATTCCGAAGG
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
78 2 0.02
79 61 0.59
80 38 0.37
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTTAGTCCCGAAGGCATTTGTGCAAGTAATTATATCCGGGTTAAGACCCGAAGGCATTCG
TGCGAGTACTATAA
Found at i:156129975 original size:40 final size:40
Alignment explanation
Indices: 156129916--156130123 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
156129906 CATTGGAATG
* * *
156129916 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
156129956 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * * **
156129996 ATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * * *
156130036 AAATCCGGGTTAAGACTCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
156130076 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
156130116 ATATCCGG
1 ATATCCGG
156130124 TTAAATTCGA
Statistics
Matches: 136, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:156137400 original size:47 final size:47
Alignment explanation
Indices: 156137325--156137435 Score: 134
Period size: 47 Copynumber: 2.4 Consensus size: 47
156137315 CCCCTCGGGA
* ** * *
156137325 CTTATCACATT-TATACACTTTCATATTCATCTTATTGGCAATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGACAATTCGGC
* *
156137372 CTTATCACTTATATACACTTTGACATTCATCACATCGACCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGACAATTCGGC
*
156137419 CTTATCACATATATACA
1 CTTATCACTTATATACA
156137436 TCTCATACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 2 0.04
47 53 0.96
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGACAATTCGGC
Found at i:156137497 original size:46 final size:46
Alignment explanation
Indices: 156137439--156137666 Score: 411
Period size: 46 Copynumber: 5.0 Consensus size: 46
156137429 ATATACATCT
* * *
156137439 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
* *
156137485 TATACATATTTCACACTAGCCATTTGCCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
156137531 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
156137577 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
156137623 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
156137667 ATATTTAACT
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 175 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:156140413 original size:40 final size:40
Alignment explanation
Indices: 156140355--156140465 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
156140345 GGATATAGCG
* * * *
156140355 ACTCGCTCGATTGTCTTCGGGACATAGCCCGG-TTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGATT-TAGTA
*
156140395 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGGATTTAGTA
** *
156140435 ACTCGCACAAAAGCCTTCGGGACTTAGCCCG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCG
156140466 ATACCATTCG
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.02
40 56 0.95
41 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGATTTAGTA
Found at i:156141226 original size:40 final size:40
Alignment explanation
Indices: 156141129--156141390 Score: 408
Period size: 40 Copynumber: 6.7 Consensus size: 40
156141119 AGCATGATTA
* *
156141129 CTCTTCGGGACCTAG-CCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
*
156141168 CTC-TCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* *
156141207 CTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
*
156141247 CTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
156141287 CTCTTCGGAACTTAGCCCGGAT--ATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* *
156141325 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
*
156141365 CTCTTCGGGACTTAGCCCGGAT-CATC
1 CTCTTCGGAACTTAGCCCGGATACATC
156141391 GTCGAGACCT
Statistics
Matches: 211, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
38 46 0.22
39 33 0.16
40 132 0.63
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:156141319 original size:118 final size:118
Alignment explanation
Indices: 156141111--156141390 Score: 413
Period size: 118 Copynumber: 2.4 Consensus size: 118
156141101 GCCCGAATAC
* * * * *
156141111 ACGTCACCAGCATGATTACTCTTCGGGACCTAG-CCGGATACATCACTAGCACGAATGCTCTCGG
1 ACGTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCGG
* *
156141175 AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
66 AACTTAGCCCGGATA-ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
* *
156141229 ACGTCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTC-TCG
*
156141294 GAACTTAGCCCGGAT-ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
65 GAACTTAGCCCGGATAATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
**
156141347 ATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CATC
1 ACGTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATC
156141391 GTCGAGACCT
Statistics
Matches: 146, Mismatches: 14, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
117 3 0.02
118 100 0.68
119 26 0.18
120 17 0.12
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (118 bp):
ACGTCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTCGG
AACTTAGCCCGGATAATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
Found at i:156141349 original size:78 final size:78
Alignment explanation
Indices: 156141129--156141386 Score: 403
Period size: 78 Copynumber: 3.3 Consensus size: 78
156141119 AGCATGATTA
* * * *
156141129 CTCTTCGGGACCTAG-CCGGATACATCACTAGCACGAATGCTC-TCGGAACTTAGTCCGGATACA
1 CTCTTCGGAACTTAGCCCGGAT--ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
156141192 TCACTAGCACGAATG
64 TCACTAGCACGAATG
*
156141207 CTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
1 CTCTTCGGAACTTAGCCCGGATA--TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
156141272 TCACTAGCACGAATG
64 TCACTAGCACGAATG
*
156141287 CTCTTCGGAACTTAGCCCGGATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATC
1 CTCTTCGGAACTTAGCCCGGATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATC
156141352 ACTAGCACGAATG
66 ACTAGCACGAATG
*
156141365 CTCTTCGGGACTTAGCCCGGAT
1 CTCTTCGGAACTTAGCCCGGAT
156141387 CATCGTCGAG
Statistics
Matches: 169, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
77 1 0.01
78 88 0.52
79 24 0.14
80 56 0.33
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (78 bp):
CTCTTCGGAACTTAGCCCGGATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATC
ACTAGCACGAATG
Found at i:156144018 original size:47 final size:47
Alignment explanation
Indices: 156143943--156144053 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
156143933 CCCCTCGGGA
* * *
156143943 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
156143990 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
156144037 CTTATCACATATATACA
1 CTTATCACTTATATACA
156144054 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:156144109 original size:46 final size:46
Alignment explanation
Indices: 156144053--156144192 Score: 253
Period size: 46 Copynumber: 3.0 Consensus size: 46
156144043 ACATATATAC
* *
156144053 ATCTCATACATGTTTCATACTAGCCATTTGGCTTTACCACACATAT
1 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
156144099 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
1 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
*
156144145 ATCACATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
1 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
156144191 AT
1 AT
156144193 ATATTTAACT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 91 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (46 bp):
ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATAT
Found at i:156151685 original size:29 final size:29
Alignment explanation
Indices: 156151652--156151725 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
156151642 GTGACGAGAT
156151652 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
156151681 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
156151710 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
156151726 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:156151741 original size:29 final size:29
Alignment explanation
Indices: 156151709--156151784 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
156151699 CTGGAAATAT
* *
156151709 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
156151738 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
156151767 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
156151785 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:156156480 original size:29 final size:29
Alignment explanation
Indices: 156156446--156156520 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
156156436 TACTCGATTT
*
156156446 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
156156475 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
156156504 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
156156521 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:156156537 original size:29 final size:29
Alignment explanation
Indices: 156156504--156156577 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
156156494 CCTTCGAGCT
156156504 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
156156533 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156156562 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
156156578 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:156159907 original size:25 final size:26
Alignment explanation
Indices: 156159879--156159929 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
156159869 AGCATCTCGA
156159879 TTAAA-GGCTCTTCGTGAGCTTCCCG
1 TTAAATGGCTCTTCGTGAGCTTCCCG
*
156159904 TTAAATTGGCTCTTTGTGAGCTTCCC
1 TTAAA-TGGCTCTTCGTGAGCTTCCC
156159930 TATAGTGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
27 18 0.78
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
TTAAATGGCTCTTCGTGAGCTTCCCG
Found at i:156159997 original size:23 final size:24
Alignment explanation
Indices: 156159971--156160031 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
156159961 TTATTCGGAG
* *
156159971 CTTCCCGATATGGTT-TTTTTTAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
156159994 CTTCCCAATAAGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
*
156160018 CTTCCTGATTATGG
1 CTTCCCGA-TATGG
156160032 CTCGGATGAC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
23 13 0.45
24 12 0.41
25 4 0.14
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:156173606 original size:40 final size:40
Alignment explanation
Indices: 156173521--156173742 Score: 346
Period size: 40 Copynumber: 5.6 Consensus size: 40
156173511 GCTACTTGCT
*
156173521 CAAATGCCTTCGGGACTTAGCCCGGTTATA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
156173560 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
156173600 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
156173640 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
156173679 CAAATGCCTTC--AATCTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATA-TAGTAACTCGCA
156173718 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
156173743 TTATCATCCG
Statistics
Matches: 170, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
37 1 0.01
38 9 0.05
39 78 0.46
40 81 0.48
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:156173667 original size:79 final size:79
Alignment explanation
Indices: 156173498--156173741 Score: 354
Period size: 79 Copynumber: 3.1 Consensus size: 79
156173488 ACCTTCGAAT
* * *
156173498 TTAGCCAGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA-TAACTCGCAC
1 TTAGCCCGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
156173561 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
156173576 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
156173641 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
* * * *
156173656 TTAGCCCGATATAGTAACTCGCACAAATGCCTTC--AATCTTAGCCCGG-AATTAGTCACTAGCA
1 TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTA-TAGTAACTCGCA
156173718 CAAATGCCTTCGGGAC
64 CAAATGCCTTCGGGAC
156173734 TTAGCCCG
1 TTAGCCCG
156173742 GTTATCATCC
Statistics
Matches: 154, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
77 2 0.01
78 51 0.33
79 69 0.45
80 32 0.21
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
TTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:156179785 original size:33 final size:33
Alignment explanation
Indices: 156179741--156179805 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
156179731 CTTGTTAGAT
* * * * *
156179741 ATTAGAGAATAACGATTAACGGAAAGATAAGAG
1 ATTAGAAAATAAAGATCAACGAAAAGACAAGAG
156179774 ATTAGAAAATAAAGATCAACGAAAAGACAAGA
1 ATTAGAAAATAAAGATCAACGAAAAGACAAGA
156179806 TTAGAGAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.57, C:0.08, G:0.20, T:0.15
Consensus pattern (33 bp):
ATTAGAAAATAAAGATCAACGAAAAGACAAGAG
Found at i:156188186 original size:21 final size:21
Alignment explanation
Indices: 156188147--156188187 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
156188137 TTAAATAGAG
*
156188147 TTTAAAATTCATAATTTATTT
1 TTTAAAATTCATAAATTATTT
156188168 TTTAAAATT-ATAAAATTATT
1 TTTAAAATTCAT-AAATTATT
156188188 AATTTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTAAAATTCATAAATTATTT
Found at i:156189336 original size:30 final size:30
Alignment explanation
Indices: 156189302--156189364 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
156189292 ACTTATGTTA
156189302 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
156189332 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
156189362 TTG
1 TTG
156189365 CTTGTTCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:156190883 original size:19 final size:20
Alignment explanation
Indices: 156190859--156190896 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
156190849 GGTACCACCA
156190859 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
156190878 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
156190897 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:156191234 original size:93 final size:93
Alignment explanation
Indices: 156191124--156191294 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
156191114 GCCCCTAAGT
* * *
156191124 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCTGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
156191189 CGAGTTCGGATGCCTAGTTACATCTAAC
66 CGAGCTCGGATGCCTAGTTACATCTAAC
* * *
156191217 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
156191282 TGAGCTCGGATGC
66 CGAGCTCGGATGC
156191295 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTAAC
Found at i:156191291 original size:46 final size:46
Alignment explanation
Indices: 156191119--156191291 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
156191109 AACCCGCCCC
* * *
156191119 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * * *
156191165 TAAATGAACTCTGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* *
156191213 TAA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
156191258 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
156191292 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 3 0.03
46 57 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:156197001 original size:39 final size:40
Alignment explanation
Indices: 156196943--156197043 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
156196933 AAATTGAATG
* *
156196943 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
156196982 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
156197022 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
156197044 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:156197036 original size:40 final size:40
Alignment explanation
Indices: 156196943--156197093 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
156196933 AAATTGAATG
* * * * *
156196943 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
156196982 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
156197022 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
156197062 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
156197094 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:156197108 original size:40 final size:38
Alignment explanation
Indices: 156196939--156197110 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
156196929 TGAGAAATTG
* *
156196939 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
156196978 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
156197015 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
156197055 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
156197095 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
156197111 TAAAGTCCGT
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:156205140 original size:40 final size:39
Alignment explanation
Indices: 156204972--156205142 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
156204962 AGAAATTGAA
* *
156204972 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
156205012 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
156205052 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
156205092 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
156205132 TGATATCCGGG
1 TGATATCCGGG
156205143 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:156208445 original size:12 final size:12
Alignment explanation
Indices: 156208428--156208452 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
156208418 TCTGTTTTAC
156208428 CTAATTAGGGTG
1 CTAATTAGGGTG
156208440 CTAATTAGGGTG
1 CTAATTAGGGTG
156208452 C
1 C
156208453 AGGGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (12 bp):
CTAATTAGGGTG
Found at i:156209561 original size:48 final size:48
Alignment explanation
Indices: 156209505--156209776 Score: 272
Period size: 48 Copynumber: 5.8 Consensus size: 48
156209495 CACGTGGTAG
* * *
156209505 GATGCCAATGCCATATCTCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * * ** *
156209553 GATGCCAATGCCATGTCCTAGACATGGTTTTACGTGGAATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
156209601 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTACAT-T-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC--ACATATC
* *
156209649 GATACCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
** * * * ** *
156209697 GATG-C--TGGTA-G-CCTAG-CTTTGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
156209740 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
156209777 ATCGTACATA
Statistics
Matches: 177, Mismatches: 36, Indels: 22
0.75 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 27 0.15
44 2 0.01
45 3 0.02
46 5 0.03
47 3 0.02
48 133 0.75
49 2 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:156214567 original size:28 final size:28
Alignment explanation
Indices: 156214536--156214591 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
156214526 GATACTAAGT
156214536 TTATCACCTCTTATTAATTCATTTTCAC
1 TTATCACCTCTTATTAATTCATTTTCAC
156214564 TTATCACCTCTTATTAATTCATTTTCAC
1 TTATCACCTCTTATTAATTCATTTTCAC
156214592 CACATTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (28 bp):
TTATCACCTCTTATTAATTCATTTTCAC
Found at i:156215061 original size:49 final size:48
Alignment explanation
Indices: 156214951--156215219 Score: 248
Period size: 49 Copynumber: 5.7 Consensus size: 48
156214941 AGGGTACGAT
* * * * *
156214951 GCCGATGCCATGTTCCAAACATGGTCTTACACTGG-CTCACACATCTAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGTCTCATATATCGAA
* * *
156214999 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAGTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTG-GTCTCATATATCGAA
* * * *
156215048 GCCGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTTATCTATCGAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGG-TCTCATATATCGAA
* * * * *
156215097 GTCGATGCCATGTCCCAGACAAGTCTTACACT-G--ACACATGTC-AA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGTCTCATATATCGAA
**
156215141 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGG-TCTCATATATCGAA
* *
156215189 GCCGATG-CATGTCTCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
156215220 AGCACACATC
Statistics
Matches: 180, Mismatches: 32, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
44 21 0.12
45 14 0.08
46 11 0.06
47 24 0.13
48 29 0.16
49 81 0.45
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGTCTCATATATCGAA
Found at i:156215111 original size:98 final size:92
Alignment explanation
Indices: 156214951--156215181 Score: 293
Period size: 98 Copynumber: 2.4 Consensus size: 92
156214941 AGGGTACGAT
* * * *
156214951 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACATCTAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCGAAGTCGATGCCATGTCCCA
* * *
156215016 GACAGGTCTTACACTGAGTTTCATATATCGAG
66 GACAAGTCTTACACTGA----CACATATC-AA
* * *
156215048 GCCGATGCCATGTCCCAGACA-GGTCTTACATTGGCTCTTATCTATCGATGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-C-ATCGAAGTCGATGCCATGTCC
*
156215112 CAGACAAGTCTTACACTGACACATGTCAA
64 CAGACAAGTCTTACACTGACACATATCAA
156215141 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
156215182 TAATGTGGCC
Statistics
Matches: 118, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
93 22 0.19
94 23 0.19
96 16 0.14
97 20 0.17
98 37 0.31
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (92 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCGAAGTCGATGCCATGTCCCA
GACAAGTCTTACACTGACACATATCAA
Found at i:156215195 original size:98 final size:95
Alignment explanation
Indices: 156214951--156215219 Score: 291
Period size: 98 Copynumber: 2.9 Consensus size: 95
156214941 AGGGTACGAT
* * * * * *
156214951 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACACA-TCTAAGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTCGATGTCGATGCCATGTCCC
* * *
156215015 AGACAGGTCTTACACTGAGTTTCATATATCGAG
66 AGACAAGTCTTACACTGA---TCACATATCGAA
* * *
156215048 GCCGATGCCATGTCCCAGACA-GGTCTTACATTGGCTCTTATCTATCGATGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-TCGATGTCGATGCCATGTCC
*
156215112 CAGACAAGTCTTACACTGA-CACATGTC-AA
65 CAGACAAGTCTTACACTGATCACATATCGAA
* * *
156215141 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TGGCCGATG-CATGTCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTCGAT-GTCGATGCCATGTCC
*
156215203 CAGACATGTCTTACACT
65 CAGACAAGTCTTACACT
156215220 AGCACACATC
Statistics
Matches: 148, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
91 23 0.16
92 7 0.05
93 23 0.16
94 24 0.16
96 16 0.11
97 19 0.13
98 36 0.24
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTCGATGTCGATGCCATGTCCC
AGACAAGTCTTACACTGATCACATATCGAA
Found at i:156219941 original size:79 final size:80
Alignment explanation
Indices: 156219799--156220005 Score: 188
Period size: 79 Copynumber: 2.6 Consensus size: 80
156219789 CCTTCGGAGA
* * ** * * * *
156219799 TTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCAC
1 TTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCAC
156219863 CAAGGCCTACGGGAC
66 CAAGGCCTACGGGAC
* * * *
156219878 TTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCGC
1 TTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCGC
* * * *
156219940 ACGAATGCCTTCGGGTC
64 ACCAAGGCCTACGGGAC
* * * *
156219957 TTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 TTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
156220006 TTATAATTTC
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 64 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
TTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCAC
CAAGGCCTACGGGAC
Found at i:156219950 original size:40 final size:40
Alignment explanation
Indices: 156219898--156220005 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
156219888 TATCACGATT
** *
156219898 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
156219938 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
156219978 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
156220006 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:156223565 original size:30 final size:30
Alignment explanation
Indices: 156223521--156223579 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
156223511 CATAAATCAT
* * *
156223521 ACTTTGACAAAATTATAATTTTGCCCCTAA
1 ACTTTCACAAAATTATAACTTAGCCCCTAA
*
156223551 ACTTTCACATAATTATAACTTAGCCCCTA
1 ACTTTCACAAAATTATAACTTAGCCCCTA
156223580 GGCTTGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (30 bp):
ACTTTCACAAAATTATAACTTAGCCCCTAA
Found at i:156226109 original size:30 final size:30
Alignment explanation
Indices: 156226075--156226134 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
156226065 GTTACATTAG
156226075 GAAAAAGCTAAGGATGCTATACAAGGATAA
1 GAAAAAGCTAAGGATGCTATACAAGGATAA
156226105 GAAAAAGCTAAGGATGCTATACAAGGATAA
1 GAAAAAGCTAAGGATGCTATACAAGGATAA
156226135 TTCTAACACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.50, C:0.10, G:0.23, T:0.17
Consensus pattern (30 bp):
GAAAAAGCTAAGGATGCTATACAAGGATAA
Found at i:156228096 original size:43 final size:42
Alignment explanation
Indices: 156227921--156228111 Score: 267
Period size: 42 Copynumber: 4.5 Consensus size: 42
156227911 ACTAAGTCTA
*
156227921 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATGTGGCATCGATATGAGATTT
* * * * *
156227963 TGTGTATGACCACACCTGGGATGTGGCATCGATATGATATTT
1 CGTGTAAGACCATATCTGGGATGTGGCATCGATATGAGATTT
*
156228005 CGTGTAAGACCACATCTGGGATGTGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATGTGGCATCGATATGAGATTT
* *
156228047 CGTGTAAGACCATAGCTGGGTTAT-TGGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTGGG--ATGTGGCATCGATATGAGATTT
*
156228090 CATGTAAGACCATATCTGGGAT
1 CGTGTAAGACCATATCTGGGAT
156228112 ATGACATTGG
Statistics
Matches: 132, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.02
42 92 0.70
43 36 0.27
44 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATGTGGCATCGATATGAGATTT
Found at i:156229458 original size:78 final size:78
Alignment explanation
Indices: 156229333--156229478 Score: 274
Period size: 78 Copynumber: 1.9 Consensus size: 78
156229323 CCTGAACTGC
*
156229333 TTCCAATGCATGTTTTGGGCCTCGTAGGCTCGTTTTAGGGACAATGTGAATGTATGTGAAAAGTT
1 TTCCAATGCATGTTTTGGGCCTCGTAGGCTCGTTTTAGGGACAATGTGAATGTATGTGAAAAGCT
156229398 TTACTTGAACTAA
66 TTACTTGAACTAA
*
156229411 TTCCAATGCATGTTTTGGGCCTCGTAGGCTCGTTTTAGGGACGATGTGAATGTATGTGAAAAGCT
1 TTCCAATGCATGTTTTGGGCCTCGTAGGCTCGTTTTAGGGACAATGTGAATGTATGTGAAAAGCT
156229476 TTA
66 TTA
156229479 AATTTGGATG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (78 bp):
TTCCAATGCATGTTTTGGGCCTCGTAGGCTCGTTTTAGGGACAATGTGAATGTATGTGAAAAGCT
TTACTTGAACTAA
Found at i:156230013 original size:31 final size:32
Alignment explanation
Indices: 156229978--156230047 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
156229968 TTAAGCCCCC
156229978 CCCAAAAAAAAAAAG-AAAAAGAAAAACCTAA
1 CCCAAAAAAAAAAAGAAAAAAGAAAAACCTAA
156230009 CCC-AAAAAAAAAAGAAAAAAGAAAAACCTAA
1 CCCAAAAAAAAAAAGAAAAAAGAAAAACCTAA
156230040 -CCAAAAAA
1 CCCAAAAAA
156230048 CATAAATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
30 13 0.35
31 24 0.65
ACGTcount: A:0.74, C:0.17, G:0.06, T:0.03
Consensus pattern (32 bp):
CCCAAAAAAAAAAAGAAAAAAGAAAAACCTAA
Found at i:156230018 original size:30 final size:30
Alignment explanation
Indices: 156229982--156230047 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
156229972 GCCCCCCCCA
156229982 AAAAAAAAAAG-AAAAAGAAAAACCTAACCC
1 AAAAAAAAAAGAAAAAAGAAAAACCTAA-CC
156230012 AAAAAAAAAAGAAAAAAGAAAAACCTAACC
1 AAAAAAAAAAGAAAAAAGAAAAACCTAACC
156230042 AAAAAA
1 AAAAAA
156230048 CATAAATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.77, C:0.14, G:0.06, T:0.03
Consensus pattern (30 bp):
AAAAAAAAAAGAAAAAAGAAAAACCTAACC
Found at i:156230301 original size:18 final size:18
Alignment explanation
Indices: 156230259--156230297 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
156230249 CCTAAAGGTG
*
156230259 ATTTTA-TCTTCTTTATT
1 ATTTTATTCTTATTTATT
156230276 ATTTTATTCTTATTT-TT
1 ATTTTATTCTTATTTATT
156230293 ATTTT
1 ATTTT
156230298 TATTTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTATTCTTATTTATT
Found at i:156230370 original size:13 final size:13
Alignment explanation
Indices: 156230352--156230400 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
156230342 TATATACATC
156230352 ATAATAAAAAAAT
1 ATAATAAAAAAAT
*
156230365 ATAATAAAAATAT
1 ATAATAAAAAAAT
*
156230378 ATATACAAAACAAAT
1 ATA-ATAAAA-AAAT
156230393 ATAA-AAAA
1 ATAATAAAA
156230401 TTATATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 19 0.61
14 6 0.19
15 6 0.19
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAATAAAAAAAT
Found at i:156230571 original size:29 final size:29
Alignment explanation
Indices: 156230529--156230585 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
156230519 TCTCTTCTTT
*
156230529 TTTCATTTATTTTT-CGTATTTACTTTAGA
1 TTTCATTTATTTTTGC-TATTTAATTTAGA
156230558 TTTCATATTA-TTTTGCTATTTAATTTAG
1 TTTCAT-TTATTTTTGCTATTTAATTTAG
156230586 CTTTAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (29 bp):
TTTCATTTATTTTTGCTATTTAATTTAGA
Done.