Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 506 of 770
Found at i:156617456 original size:27 final size:28
Alignment explanation
Indices: 156617398--156617487 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
156617388 AGGAAGCGTC
*
156617398 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
156617426 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
156617453 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
156617482 CTGGTG
1 CTGGTG
156617488 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:156617498 original size:29 final size:28
Alignment explanation
Indices: 156617408--156617498 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
156617398 CTGGTGGCTA
* * *
156617408 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
156617436 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
156617463 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
156617492 TGTCACA
1 TGCCACA
156617499 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:156617506 original size:55 final size:56
Alignment explanation
Indices: 156617398--156617512 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
156617388 AGGAAGCGTC
* * *
156617398 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
156617453 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
156617509 CTGG
1 CTGG
156617513 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:156618583 original size:11 final size:10
Alignment explanation
Indices: 156618555--156618588 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
156618545 AGCCTGTAAG
156618555 TATTCTGAAT
1 TATTCTGAAT
*
156618565 TTTTCTGAAT
1 TATTCTGAAT
156618575 ATATTCTGAAT
1 -TATTCTGAAT
156618586 TAT
1 TAT
156618589 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:156623970 original size:12 final size:13
Alignment explanation
Indices: 156623942--156623974 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
156623932 TTTATCTTTT
156623942 TTCTCCATCTACC
1 TTCTCCATCTACC
*
156623955 TTCTCC-TCTTCC
1 TTCTCCATCTACC
156623967 TTCTCCAT
1 TTCTCCAT
156623975 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:156629963 original size:37 final size:34
Alignment explanation
Indices: 156629905--156630004 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 34
156629895 CTCAATCATG
*
156629905 TACTGGGCCGTAGCCCTTTTCATATTTCATATTTCAT
1 TACTGGG-CGAAG-CCTTTTCATATTTCATATTT-AT
156629942 AATACTGGGCGAAGCCTTTTCATATTTC--A--TAT
1 --TACTGGGCGAAGCCTTTTCATATTTCATATTTAT
*
156629974 TACTGGCCGAAGCCTTTTCATATTTCATATT
1 TACTGGGCGAAGCCTTTTCATATTTCATATT
156630005 ACTGGGCCGA
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
30 25 0.45
32 3 0.05
33 1 0.02
35 1 0.02
37 14 0.25
38 4 0.07
39 7 0.13
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (34 bp):
TACTGGGCGAAGCCTTTTCATATTTCATATTTAT
Found at i:156629965 original size:30 final size:30
Alignment explanation
Indices: 156629929--156630021 Score: 159
Period size: 30 Copynumber: 3.1 Consensus size: 30
156629919 CCTTTTCATA
*
156629929 TTTCATATTTCATAATACTGGGCGAAGCCT
1 TTTCATATTTCATATTACTGGGCGAAGCCT
*
156629959 TTTCATATTTCATATTACTGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCGAAGCCT
156629989 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGG-CGAAGCCT
156630020 TT
1 TT
156630022 ACTGTAAACG
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 49 0.83
31 10 0.17
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.40
Consensus pattern (30 bp):
TTTCATATTTCATATTACTGGGCGAAGCCT
Found at i:156630263 original size:24 final size:24
Alignment explanation
Indices: 156630212--156630330 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
156630202 GCTTTATCAT
*
156630212 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
156630237 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
156630261 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
156630284 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
156630308 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
156630331 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:156630291 original size:47 final size:48
Alignment explanation
Indices: 156630212--156630330 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
156630202 GCTTTATCAT
*
156630212 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
156630261 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
156630308 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
156630331 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:156630411 original size:11 final size:11
Alignment explanation
Indices: 156630381--156630434 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
156630371 TATGATTACC
156630381 TCATGTGCATA
1 TCATGTGCATA
*
156630392 TCA--TACATA
1 TCATGTGCATA
156630401 TCATGTGCATA
1 TCATGTGCATA
*
156630412 TCA--TACAT-
1 TCATGTGCATA
156630420 TCATGTGCATA
1 TCATGTGCATA
156630431 TCAT
1 TCAT
156630435 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:156630425 original size:19 final size:20
Alignment explanation
Indices: 156630381--156630439 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
156630371 TATGATTACC
156630381 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
156630401 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
156630420 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
156630440 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:156632799 original size:30 final size:30
Alignment explanation
Indices: 156632765--156632824 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
156632755 ATTTAATACG
156632765 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
156632795 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
156632825 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:156639524 original size:40 final size:40
Alignment explanation
Indices: 156639479--156639608 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
156639469 CGGAATATAA
156639479 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
156639519 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
156639559 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
156639599 CCGGATATAA
1 CCGGATATAA
156639609 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:156639629 original size:40 final size:40
Alignment explanation
Indices: 156639495--156639646 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
156639485 ATAAGCATGT
* * *
156639495 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA-TGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCG-C-CA
* *
156639535 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
156639575 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* * *
156639615 GCATAATT-CTCTTCGGGGCTTAGCCTGGATAT
1 GCACAATTGC-CTTCGGGTCTTAGCCCGGATAT
156639647 CATTCAATTT
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.03
40 87 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:156643085 original size:93 final size:93
Alignment explanation
Indices: 156642977--156643147 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
156642967 GCCCCTAAGT
* * * *
156642977 GAACTCAGACTCAACTGAAC-GAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCAGACTCAACTCAACTG-GCTC-GGACATTCGAATCCATAAGTGAACTCGGACTCAACTC
156643040 AACGAGTTAGGATGCCTAGTTACATCTCAC
64 AACGAGTTAGGATGCCTAGTTACATCTCAC
* *
156643070 GAACTCAGACTCAACTCAACTGGTTCGGACATTCGAATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACTGGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
*
156643135 CGAGTTCGGATGC
66 CGAGTTAGGATGC
156643148 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 2 0.03
93 66 0.96
94 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACTGGCTCGGACATTCGAATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTAGGATGCCTAGTTACATCTCAC
Found at i:156644743 original size:37 final size:37
Alignment explanation
Indices: 156644690--156644772 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
156644680 TATAAAAGAA
156644690 GTCTTACCCAGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCAGACATAATCTCCACACGTAGTCATCAG
* *
156644727 GTCTTACCCAGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCAGACATAATCTCCACACGTAGTCATCAG
*
156644764 GTCTCACCC
1 GTCTTACCC
156644773 GGAACATATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACATAATCTCCACACGTAGTCATCAG
Found at i:156644760 original size:19 final size:19
Alignment explanation
Indices: 156644702--156644760 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
156644692 CTTACCCAGA
156644702 CATAATCTCCACACGTAGT
1 CATAATCTCCACACGTAGT
* * *
156644721 CATCAGGTCT-TAC-C-CAGT
1 CAT-A-ATCTCCACACGTAGT
156644739 CATAATCTCCACACGTAGT
1 CATAATCTCCACACGTAGT
156644758 CAT
1 CAT
156644761 CGGGTCTCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
16 3 0.10
17 3 0.10
18 7 0.24
19 10 0.34
20 3 0.10
21 3 0.10
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (19 bp):
CATAATCTCCACACGTAGT
Found at i:156644931 original size:49 final size:49
Alignment explanation
Indices: 156644876--156645041 Score: 296
Period size: 49 Copynumber: 3.4 Consensus size: 49
156644866 TTTTGCATGA
156644876 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
156644925 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCA
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
156644974 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
156645023 GCTATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
156645042 CATATATGTA
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 112 1.00
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:156648607 original size:29 final size:29
Alignment explanation
Indices: 156648571--156648825 Score: 449
Period size: 29 Copynumber: 8.8 Consensus size: 29
156648561 TATTGAAAAA
* *
156648571 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
156648600 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
156648629 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
156648658 CTCGCACACATAGTGCC-CGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
156648686 CTCGCACACATAGTGCCCCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
156648715 CTCGCACACATAGTGCCCCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
156648744 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
156648773 CTCGCACACATAGTGCCCCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
156648802 CTCGTACACATAGTGCCTCGATTA
1 CTCGCACACATAGTGCCTCGATTA
156648826 ACGAAATTTG
Statistics
Matches: 219, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
28 28 0.13
29 191 0.87
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:156648749 original size:115 final size:116
Alignment explanation
Indices: 156648571--156648825 Score: 458
Period size: 115 Copynumber: 2.2 Consensus size: 116
156648561 TATTGAAAAA
* * *
156648571 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
1 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGATCTCGCAC
156648636 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTG-CCCGATTACTGAT
66 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGAT
*
156648686 CTCGCACACATAGTGCCCCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGATCTCGCAC
1 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGATCTCGCAC
156648751 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGAT
66 ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGAT
*
156648802 CTCGTACACATAGTGCCTCGATTA
1 CTCGCACACATAGTGCCTCGATTA
156648826 ACGAAATTTG
Statistics
Matches: 133, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
115 98 0.74
116 35 0.26
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (116 bp):
CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGATCTCGCAC
ACATAGTGCCTCGATTACTGATCTCGCACACATAGTGCCCCGATTACTGAT
Found at i:156650952 original size:37 final size:37
Alignment explanation
Indices: 156650899--156651020 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
156650889 TATAAAAGAA
*
156650899 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156650936 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156650973 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
156651010 GTCTCACCCGG
1 GTCTTACCCGG
156651021 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:156651177 original size:49 final size:49
Alignment explanation
Indices: 156651122--156651238 Score: 216
Period size: 49 Copynumber: 2.4 Consensus size: 49
156651112 TTTTGCATTA
156651122 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
156651171 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
156651220 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
156651239 CATATATGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 66 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:156653870 original size:30 final size:30
Alignment explanation
Indices: 156653836--156653895 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
156653826 ATTTAATACG
156653836 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
156653866 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
156653896 GGCTCTGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:156659481 original size:29 final size:29
Alignment explanation
Indices: 156659448--156659579 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
156659438 GTGACGAGAT
*
156659448 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
156659477 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
156659506 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
156659535 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
156659564 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
156659580 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:156663011 original size:40 final size:40
Alignment explanation
Indices: 156662956--156663125 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
156662946 AACATTGGAA
156662956 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
156662996 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
156663036 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
156663075 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
156663116 CTATATCCGG
1 ATATATCCGG
156663126 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:156671058 original size:40 final size:40
Alignment explanation
Indices: 156670986--156671152 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
156670976 AACATTGGAA
156670986 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
156671025 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * *
156671065 ATATATCCGGGCTAAGACCCG-AGGC-TTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
156671102 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
156671143 CTATATCCGG
1 ATATATCCGG
156671153 TTAAATCCCG
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
37 2 0.02
38 24 0.22
39 25 0.23
40 57 0.53
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:156671129 original size:78 final size:79
Alignment explanation
Indices: 156670986--156671152 Score: 205
Period size: 78 Copynumber: 2.1 Consensus size: 79
156670976 AACATTGGAA
* * * *
156670986 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
1 ATATATCCGGGCTAAGACCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGC
* *
156671051 ATTCGTGCGAGTTG
66 AATCGTGCGAGTCG
* * *
156671065 ATATATCCGGGCTAAGACCCG-AGGC-TTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAG
1 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTCA-CAAATCCGGGCTAAGACCCGAAG
156671127 GCAATCGTGCGAGTCG
64 GCAATCGTGCGAGTCG
*
156671143 CTATATCCGG
1 ATATATCCGG
156671153 TTAAATCCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
77 2 0.03
78 50 0.66
79 21 0.28
80 3 0.04
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (79 bp):
ATATATCCGGGCTAAGACCGAAGGCATTCGTGCAAGTTCACAAATCCGGGCTAAGACCCGAAGGC
AATCGTGCGAGTCG
Found at i:156674912 original size:27 final size:28
Alignment explanation
Indices: 156674856--156674925 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
156674846 AAATTTGTAC
156674856 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
156674884 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
156674911 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
156674926 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:156674936 original size:27 final size:27
Alignment explanation
Indices: 156674856--156674937 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
156674846 AAATTTGTAC
* *
156674856 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
156674884 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
156674911 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
156674938 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:156682670 original size:27 final size:28
Alignment explanation
Indices: 156682614--156682683 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
156682604 AAATTTGTAC
156682614 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
156682642 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
156682669 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
156682684 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:156682694 original size:27 final size:27
Alignment explanation
Indices: 156682614--156682695 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
156682604 AAATTTGTAC
* *
156682614 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
156682642 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
156682669 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
156682696 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:156686233 original size:56 final size:56
Alignment explanation
Indices: 156686172--156686322 Score: 248
Period size: 56 Copynumber: 2.7 Consensus size: 56
156686162 AGTAAGACCA
* *
156686172 TGGCATCGATATATGACTCTAATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* *
156686228 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* *
156686284 TGGAATCAATATGTGACTCTGATATATGTGTGCGAGTAA
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAA
156686323 CACCCTATCT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 87 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
Found at i:156689278 original size:27 final size:27
Alignment explanation
Indices: 156689248--156689644 Score: 327
Period size: 27 Copynumber: 14.7 Consensus size: 27
156689238 TATAGGGTAG
* * **
156689248 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * * *
156689275 AATTACCAAAATAACCTCGAATAGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
156689302 AATTACCAAAATGCCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
156689329 AATTACCAAAATACCC-TGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
156689355 AATTACTAAAATACCCTTGATTTTTGA
1 AATTACCAAAATACCCTTGATTTGTAA
** ** *
156689382 AATTACTGAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
156689409 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
156689436 AATTATCGAAATACCCTCGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
156689463 AATTACCAAAATACCCTTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
156689490 AATTACCAAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
156689517 AATTA-CAGTAATA-CCTCTGATTTACAA
1 AATTACCA-AAATACCCT-TGATTTGTAA
**
156689544 AATTA-CAGAAATACCCTTGACTTTCAAA
1 AATTACCA-AAATACCCTTGA-TTTGTAA
* * *
156689572 AATTA-CAGAAATACCGTTGGTTTGCAA
1 AATTACCA-AAATACCCTTGATTTGTAA
* * * *
156689599 AATTACCGAAATATCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
156689626 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
156689645 TAAGGTGAAA
Statistics
Matches: 310, Mismatches: 54, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
26 30 0.10
27 253 0.82
28 27 0.09
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:156689434 original size:107 final size:108
Alignment explanation
Indices: 156689248--156689611 Score: 299
Period size: 107 Copynumber: 3.4 Consensus size: 108
156689238 TATAGGGTAG
*
156689248 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATAACCTCGAATAGTAAAATTACCAAAA
1 AATTACTAAAATACCCTTGATTTACAAAATTACCAAAATAACCTCGAATAGTAAAATTACCAAAA
* * ** *
156689313 TGCCCTTGGTTTGTAAAATTACCAAAATACCCT-GGTTTGTAA
66 TACCCTCGACTTGTAAAATTACCAAAATACCCTCGATTTGTAA
*** ** * * **
156689355 AATTACTAAAATACCCTTGATTTTTGAAATTACTGAAATACCCTC-AACTTGTAAAATTACTGAA
1 AATTACTAAAATACCCTTGATTTACAAAATTACCAAAATAACCTCGAA-TAGTAAAATTACCAAA
* *
156689419 ATACCCTCGACTTGTAAAATTATCGAAATACCCTCGATTTGTAA
65 ATACCCTCGACTTGTAAAATTACCAAAATACCCTCGATTTGTAA
* * ** * * * * * *
156689463 AATTACCAAAATACCCTTAATTTGGAAAATTACCAAAATACCCTTGATTTGGAAAATTA-CAGTA
1 AATTACTAAAATACCCTTGATTTACAAAATTACCAAAATAACCTCGAATAGTAAAATTACCA-AA
* ** * **
156689527 ATA-CCTCTGATTTACAAAATTA-CAGAAATACCCTTGACTTTCAAA
65 ATACCCTC-GACTTGTAAAATTACCA-AAATACCCTCGA-TTTGTAA
* * * *
156689572 AATTAC-AGAAATACCGTTGGTTTGCAAAATTACCGAAATA
1 AATTACTA-AAATACCCTTGATTTACAAAATTACCAAAATA
156689612 TCCTTGGTTT
Statistics
Matches: 207, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
106 2 0.01
107 84 0.41
108 82 0.40
109 39 0.19
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (108 bp):
AATTACTAAAATACCCTTGATTTACAAAATTACCAAAATAACCTCGAATAGTAAAATTACCAAAA
TACCCTCGACTTGTAAAATTACCAAAATACCCTCGATTTGTAA
Found at i:156689900 original size:41 final size:41
Alignment explanation
Indices: 156689855--156689977 Score: 147
Period size: 41 Copynumber: 3.0 Consensus size: 41
156689845 CGGAGGAAGA
* * *
156689855 AATTGAGGATCGCATGGTTGCTTAACGATCGTAGATCTACC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
* * * * *
156689896 AATTGAGGATCGCATAGTTGTTTGATGACCGTGGATCCACT
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
* * *
156689937 AATTAAGGATCGCATGGTTGCTTGACGACCATGGATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
156689978 GGTGGCTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
AATTGAGGATCGCATGGTTGCTTGACGACCGTAGATCCACC
Found at i:156692797 original size:27 final size:26
Alignment explanation
Indices: 156692767--156693013 Score: 163
Period size: 27 Copynumber: 9.2 Consensus size: 26
156692757 TATAAGGTAG
* * **
156692767 AATTACTAAAATACCTTTGGTTTACAA
1 AATTACCAAAATACC-CTGGTTTGTAA
156692794 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACC-CTGGTTTGTAA
156692821 AATTACCAAAATACCCTGGTTTGTAA
1 AATTACCAAAATACCCTGGTTTGTAA
** *
156692847 AATTACCAAAATACCCCTCATTTGTGA
1 AATTACCAAAATA-CCCTGGTTTGTAA
** ** ***
156692874 AATTACTGAAATACTTTTGACCTGTAA
1 AATTACCAAAATAC-CCTGGTTTGTAA
* *
156692901 ATTTACCAAAATACCCTGGACTTGTAA
1 AATTACCAAAATACCCTGG-TTTGTAA
* * * * *
156692928 AGTTATCGAAATACTCTCGATTTGTAA
1 AATTACCAAAATACCCT-GGTTTGTAA
***
156692955 AATTACCAAAATAACCCAAAATTTG-AA
1 AATTACCAAAAT-ACCC-TGGTTTGTAA
* * *
156692982 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCC-TGGTTTGTAA
156693009 AATTA
1 AATTA
156693014 TAGAAATACC
Statistics
Matches: 174, Mismatches: 39, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
26 36 0.21
27 129 0.74
28 9 0.05
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
AATTACCAAAATACCCTGGTTTGTAA
Found at i:156692992 original size:54 final size:54
Alignment explanation
Indices: 156692792--156693013 Score: 189
Period size: 54 Copynumber: 4.1 Consensus size: 54
156692782 TTTGGTTTAC
*** * *
156692792 AAAATTACCAAAATA-CCACTGGTTTGTAAAATTACCAAAATACCC-TGGTTTGT
1 AAAATTACCAAAATACCCA-AAATTTGTAAAATTACCGAAATACCCTTGATTTGT
*** * * ** **
156692845 AAAATTACCAAAATACCCCTCATTTGTGAAATTACTGAAATACTTTTGACCTGT
1 AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTTGATTTGT
* *** * * * * *
156692899 AAATTTACCAAAATACCCTGGACTTGTAAAGTTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTTGATTTGT
*
156692953 AAAATTACCAAAATAACCCAAAATTTG-AAAATTACCGAAATACCCTTGATTTGG
1 AAAATTACCAAAAT-ACCCAAAATTTGTAAAATTACCGAAATACCCTTGATTTGT
156693007 AAAATTA
1 AAAATTA
156693014 TAGAAATACC
Statistics
Matches: 132, Mismatches: 34, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 34 0.26
54 90 0.68
55 8 0.06
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCAAAATTTGTAAAATTACCGAAATACCCTTGATTTGT
Found at i:156693019 original size:27 final size:27
Alignment explanation
Indices: 156692980--156693109 Score: 109
Period size: 27 Copynumber: 4.8 Consensus size: 27
156692970 CCAAAATTTG
* **
156692980 AAAATTACCGAAATACCCTTGATTTGG
1 AAAATTACAGAAATACCCTTGATTTAC
* * *
156693007 AAAATTATAGAAATACCCCTAATTTAC
1 AAAATTACAGAAATACCCTTGATTTAC
* * * *
156693034 AAAATTACAAAAACACCCTTAACTTTAA
1 AAAATTACAGAAATACCCTTGA-TTTAC
* * **
156693062 AAAATTACAGAAATACCATTGGTTCGC
1 AAAATTACAGAAATACCCTTGATTTAC
156693089 AAAATTATC-GAAATACCCTTG
1 AAAATTA-CAGAAATACCCTTG
156693110 GTTTTTAAAT
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
27 59 0.73
28 22 0.27
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGATTTAC
Found at i:156693420 original size:41 final size:41
Alignment explanation
Indices: 156693375--156693454 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
156693365 GAGGAAGAAC
156693375 TTGAGGATCGCATGGTTGCTTGACGACAGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACAGTGGATCCACCGA
* * *
156693416 TTGAGGATTGCATGGTTGCTTGATGACCGTGGATCCACC
1 TTGAGGATCGCATGGTTGCTTGACGACAGTGGATCCACC
156693455 AGTGGCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGACGACAGTGGATCCACCGA
Found at i:156693649 original size:22 final size:22
Alignment explanation
Indices: 156693598--156693661 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
156693588 CCAATTATTT
*
156693598 TGATTATGGCTTTGTGCCAACC
1 TGATTATGGCTCTGTGCCAACC
*
156693620 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
* *
156693642 TGATTATGGTTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
156693662 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:156696715 original size:40 final size:40
Alignment explanation
Indices: 156696630--156696780 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
156696620 AATTGAATGA
* * * **
156696630 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
156696670 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
156696711 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
156696750 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
156696781 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:156696794 original size:40 final size:40
Alignment explanation
Indices: 156696667--156696796 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
156696657 ATGCTGGAAA
* * *
156696667 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
156696707 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
156696747 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
156696787 TTATATCCGG
1 TTATATCCGG
156696797 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:156700210 original size:6 final size:6
Alignment explanation
Indices: 156700192--156700380 Score: 86
Period size: 6 Copynumber: 30.3 Consensus size: 6
156700182 AAGAAACATT
* * *
156700192 ATCAGA A-CTAGA ATCAGA ATCATA ATCAGG ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
156700241 ATCAGA GTCAGA ATCA-A TATTAGGTA A-CAGA ATCAAA ATCAAA ATCAGT
1 ATCAGA ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
156700290 ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATC-AGA
* *
156700341 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
156700381 GTGAATGCAA
Statistics
Matches: 138, Mismatches: 24, Indels: 42
0.68 0.12 0.21
Matches are distributed among these distances:
5 11 0.08
6 97 0.70
7 24 0.17
8 5 0.04
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:156700213 original size:18 final size:18
Alignment explanation
Indices: 156700192--156700380 Score: 86
Period size: 19 Copynumber: 10.1 Consensus size: 18
156700182 AAGAAACATT
156700192 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
* *
156700210 ATCATAATCAGGATCAGA
1 ATCAGAATCAGAATCAGA
*
156700228 ATCAG-GTGACAGAATCAGA
1 ATCAGAAT--CAGAATCAGA
* *
156700247 GTCAGAATCA-ATATTAGGTA
1 ATCAGAATCAGA-ATCA-G-A
* *
156700267 A-CAGAATCAAAATCAAA
1 ATCAGAATCAGAATCAGA
*
156700284 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
156700303 ATCAAAATCAGAATCAGT
1 ATCAGAATCAGAATCAGA
*
156700321 ATCAAGTAA-CAGAATCAAAA
1 ATC-AG-AATCAGAATC-AGA
*
156700341 ATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
156700361 A-CAGAATCAAAAATCAGA
1 ATCAGAATC-AGAATCAGA
156700379 AT
1 AT
156700381 GTGAATGCAA
Statistics
Matches: 127, Mismatches: 24, Indels: 39
0.67 0.13 0.21
Matches are distributed among these distances:
17 6 0.05
18 42 0.33
19 61 0.48
20 18 0.14
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:156700243 original size:31 final size:31
Alignment explanation
Indices: 156700206--156700380 Score: 242
Period size: 31 Copynumber: 5.6 Consensus size: 31
156700196 GAACTAGAAT
* * * *
156700206 CAGAATCATAATCAGGATCAGAATCAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * * *
156700237 CAGAATCAGAGTCAGAATCAATATTAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
156700268 CAGAATCAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
156700299 CAGAATCAAAATCAGAATCAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
156700330 CAGAATCAAAAATCAGAATCAGTATCAGGTAA
1 CAGAATC-AAAATCAGAATCAGTATCAGGTAA
156700362 CAGAATCAAAAATCAGAAT
1 CAGAATC-AAAATCAGAAT
156700381 GTGAATGCAA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 86 0.67
32 42 0.33
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.19
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:156700559 original size:27 final size:26
Alignment explanation
Indices: 156700517--156700590 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
156700507 GCTTAGTTAT
*
156700517 CAGATATTGTGACAGA-CTCACCAGATA
1 CAGATATTGTGGCAGAGC-CACCAGA-A
*
156700544 CAGATATTGTGGCAGAGCCACTAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
156700570 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
156700591 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 20 0.48
27 21 0.50
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:156700580 original size:26 final size:27
Alignment explanation
Indices: 156700517--156700591 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
156700507 GCTTAGTTAT
* *
156700517 CAGATATTGTGACAGA-CTCACCAGATA
1 CAGATATTGTGGCAGAGC-CACTAGATA
156700544 CAGATATTGTGGCAGAGCCACTAGA-A
1 CAGATATTGTGGCAGAGCCACTAGATA
* *
156700570 CAGATAATGTGGCAAAGCCACT
1 CAGATATTGTGGCAGAGCCACT
156700592 TAACAGAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 21 0.49
27 21 0.49
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACTAGATA
Found at i:156700606 original size:25 final size:26
Alignment explanation
Indices: 156700543--156700608 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
156700533 CTCACCAGAT
** *
156700543 ACAGATATTGTGGCAGAGCCACTAGA
1 ACAGATAACGTGGCAAAGCCACTAGA
* *
156700569 ACAGATAATGTGGCAAAGCCACT-TA
1 ACAGATAACGTGGCAAAGCCACTAGA
156700594 ACAGA-ATACGTGGCA
1 ACAGATA-ACGTGGCA
156700609 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.03
25 13 0.37
26 21 0.60
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
ACAGATAACGTGGCAAAGCCACTAGA
Found at i:156700777 original size:22 final size:22
Alignment explanation
Indices: 156700749--156700813 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
156700739 GCAAATACGT
*
156700749 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
156700771 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
156700793 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
156700814 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:156701614 original size:27 final size:27
Alignment explanation
Indices: 156701240--156701622 Score: 515
Period size: 27 Copynumber: 14.3 Consensus size: 27
156701230 GGGGCAAAAT
* * * *
156701240 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
156701266 GGTAATTCCACACTACAGGGGTAATTT-
1 GGTAATTCTACCCTACAGGGGT-ATTTC
156701293 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
156701320 GGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701347 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701374 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701401 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
156701428 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701455 GGTAATTCTAACCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701481 TGGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
156701509 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
156701535 TGATAATTCTACCCTATA-GGGTATTTT
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
156701562 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
156701589 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
156701616 GATAATT
1 GGTAATT
156701623 TTGTAAATCG
Statistics
Matches: 321, Mismatches: 28, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
26 42 0.13
27 274 0.85
28 5 0.02
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:156701636 original size:27 final size:27
Alignment explanation
Indices: 156701606--156701953 Score: 131
Period size: 27 Copynumber: 12.9 Consensus size: 27
156701596 CTACCCTACA
**
156701606 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * *** *
156701633 AGGGTAAAACGATAATTCTGTTAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
156701660 ATGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* *
156701687 AGGGTATTTCAATAATTTTACAAGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
156701714 AGGGTATTTC-AGTAATTTCACAAATC-
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
156701740 AGGGGTATTTTGGTAATTTTACAAA-CTA
1 A-GGGTATTTCGATAATTTTACAAATC-G
* * *
156701768 AGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
156701794 AGGGGTATTTTGGTAATTTTATAAA-CAA
1 A-GGGTATTTCGATAATTTTACAAATC-G
* * *
156701822 AGGGTATTT-TAGTAATTTTAC-AACCC
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * ** * *
156701848 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
156701876 AGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * * *
156701902 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTCGATAATTTTACAAATCG
*
156701930 AGGGTATTT-TATTAATTTTACAAA
1 AGGGTATTTCGA-TAATTTTACAAA
156701954 CCAGGGGTAT
Statistics
Matches: 257, Mismatches: 47, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
26 12 0.05
27 236 0.92
28 9 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:156701954 original size:27 final size:27
Alignment explanation
Indices: 156701662--156701974 Score: 347
Period size: 27 Copynumber: 11.6 Consensus size: 27
156701652 GTTAATCAAT
* ** *
156701662 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAAACCAAG
*** ** *
156701689 GGTATTTCAATAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAAACCAAG
** * * *
156701716 GGTATTTCAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
*
156701743 GGTATTTTGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
*
156701770 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
156701797 GGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * *
156701824 GGTATTTTAGTAATTTTACAACCCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
**
156701851 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
156701878 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
156701905 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
** *
156701932 GGTATTTTATTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
156701959 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
156701975 GGTACACTAA
Statistics
Matches: 241, Mismatches: 45, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 241 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAAG
Found at i:156701966 original size:54 final size:54
Alignment explanation
Indices: 156701714--156701974 Score: 405
Period size: 54 Copynumber: 4.8 Consensus size: 54
156701704 TTACAAGTCG
* * * * *
156701714 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
156701768 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
156701822 AGGGTATTTTAGTAATTTTACAACCCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
156701876 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
156701930 AGGGTATTTTATTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
156701975 GGTACACTAA
Statistics
Matches: 188, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 188 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:156702861 original size:27 final size:27
Alignment explanation
Indices: 156702831--156702930 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
156702821 CCCTGATTTG
* *
156702831 TAAAATTGCCGAAATATCCTCGACCTA
1 TAAAATTACCGAAATACCCTCGACCTA
* * *
156702858 TAAATTTACCGAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCCTCGACCTA
* * ** *
156702885 TAAAATTACCGAAATACCATTGATTTG
1 TAAAATTACCGAAATACCCTCGACCTA
*
156702912 TAAAATTACCAAAATACCC
1 TAAAATTACCGAAATACCC
156702931 CTAATCTGGA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGACCTA
Found at i:156702921 original size:54 final size:52
Alignment explanation
Indices: 156702809--156703038 Score: 158
Period size: 54 Copynumber: 4.2 Consensus size: 52
156702799 ATTCAGGGTG
* * * ** * *
156702809 TTACAGAAATACCCCTGATTTGTAAAATTGCCGAAATATCCTCGACCTATAAAT
1 TTACAGAAATACCCC-GAATTGTAAAATTACCGAAATA-CCTTGATTTGTAAAA
* *
156702863 TTACCGAAATACCCTCGACTTGTAAAATTACCGAAATACCATTGATTTGTAAAA
1 TTACAGAAATACCC-CGAATTGTAAAATTACCGAAATACC-TTGATTTGTAAAA
* * * *
156702917 TTACCA-AAATACCCCTAATCTGGAAAATTACTGAAATACCCTTAATTTAG-AAAA
1 TTA-CAGAAATACCCCGAAT-TGTAAAATTACCGAAATA-CCTTGATTT-GTAAAA
* ** ** **
156702971 TTACAGAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTTCAAAAA
1 TTACAGAAATACCCC-GAATTGTAAAATTACCGAAATA-CCTTGA-TTTGTAAAA
*
156703026 TTACAAAAATACC
1 TTACAGAAATACC
156703039 ATTGGTTTGA
Statistics
Matches: 143, Mismatches: 23, Indels: 19
0.77 0.12 0.10
Matches are distributed among these distances:
53 7 0.05
54 110 0.77
55 26 0.18
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (52 bp):
TTACAGAAATACCCCGAATTGTAAAATTACCGAAATACCTTGATTTGTAAAA
Found at i:156702990 original size:81 final size:81
Alignment explanation
Indices: 156702809--156703000 Score: 199
Period size: 81 Copynumber: 2.4 Consensus size: 81
156702799 ATTCAGGGTG
* * * * * *
156702809 TTACAGAAATACCCCTGATTTGTAAAATTGCCGAAATATCCTCGACCTATAAATTTACCGAAATA
1 TTACAGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCAACCTAGAAAATTACCGAAATA
*
156702874 CCCTCGACTTGTAAAA
66 CCCTCAACTTGTAAAA
* ** * * *
156702890 TTACCGAAATACCATTGATTTGTAAAATTACCAAAATACCC-CTAATCTGGAAAATTACTGAAAT
1 TTACAGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC-AACCTAGAAAATTACCGAAAT
* *
156702954 ACCCTTAATTTAG-AAAA
65 ACCCTCAACTT-GTAAAA
**
156702971 TTACAGAAATACCCCTGATTTACAAAATTA
1 TTACAGAAATACCCCTGATTTGTAAAATTA
156703001 TAGAAATACC
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
80 1 0.01
81 87 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
TTACAGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCAACCTAGAAAATTACCGAAATA
CCCTCAACTTGTAAAA
Found at i:156703073 original size:27 final size:27
Alignment explanation
Indices: 156702863--156703069 Score: 161
Period size: 27 Copynumber: 7.6 Consensus size: 27
156702853 ACCTATAAAT
* * * *
156702863 TTACCGAAATACCCTCGACTTGTAAAA
1 TTACCAAAATACCCTTGATTTGAAAAA
* * *
156702890 TTACCGAAATACCATTGATTTGTAAAA
1 TTACCAAAATACCCTTGATTTGAAAAA
* * * *
156702917 TTACCAAAATACCCCTAATCTGGAAAA
1 TTACCAAAATACCCTTGATTTGAAAAA
** *
156702944 TTACTGAAATACCCTTAATTT-AGAAAA
1 TTACCAAAATACCCTTGATTTGA-AAAA
*
156702971 TTA-CAGAAATACCCCTGATTT-ACAAAA
1 TTACCA-AAATACCCTTGATTTGA-AAAA
* *
156702998 TTA-TAGAAATACCCTTGACTTTCAAAAA
1 TTACCA-AAATACCCTTGA-TTTGAAAAA
* * *
156703026 TTACAAAAATACCATTGGTTTGAAAAA
1 TTACCAAAATACCCTTGATTTGAAAAA
156703053 TTACCAAAATACCCTTG
1 TTACCAAAATACCCTTG
156703070 GTTTTTAGAT
Statistics
Matches: 148, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
27 126 0.85
28 20 0.14
29 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
TTACCAAAATACCCTTGATTTGAAAAA
Found at i:156703083 original size:27 final size:27
Alignment explanation
Indices: 156702886--156703096 Score: 97
Period size: 27 Copynumber: 7.8 Consensus size: 27
156702876 CTCGACTTGT
* * *
156702886 AAAATTACCGAAATACCATTGATTTGT
1 AAAATTACCAAAATACCATTGGTTTGA
** ** * *
156702913 AAAATTACCAAAATACCCCTAATCTGG
1 AAAATTACCAAAATACCATTGGTTTGA
** * **
156702940 AAAATTACTGAAATACCCTTAATTT-A
1 AAAATTACCAAAATACCATTGGTTTGA
** *
156702966 GAAAATTA-CAGAAATACCCCTGATTT-A
1 -AAAATTACCA-AAATACCATTGGTTTGA
* * * *
156702993 CAAAATTA-TAGAAATACCCTTGACTTTCA
1 -AAAATTACCA-AAATACCATTG-GTTTGA
*
156703022 AAAATTACAAAAATACCATTGGTTTGA
1 AAAATTACCAAAATACCATTGGTTTGA
* **
156703049 AAAATTACCAAAATACCCTTGGTTTTT
1 AAAATTACCAAAATACCATTGGTTTGA
* * *
156703076 AGATTTACCAAAACACCATTG
1 AAAATTACCAAAATACCATTG
156703097 TAGGGTGAAA
Statistics
Matches: 148, Mismatches: 31, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
27 126 0.85
28 20 0.14
29 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCATTGGTTTGA
Found at i:156703375 original size:41 final size:41
Alignment explanation
Indices: 156703330--156703413 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
156703320 GGAGGAAGAA
156703330 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
* * * *
156703371 ATTGAGGATCGTATGGTTGCTTGATGATTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
156703412 AT
1 AT
156703414 GGTTTCTAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
Found at i:156703609 original size:22 final size:22
Alignment explanation
Indices: 156703554--156703618 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
156703544 GGCAATTATT
*
156703554 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
156703576 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* * *
156703598 CTGATTAAGGCTGTATGCCAA
1 CTGATTATGGCTCTGTGCCAA
156703619 AAGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:156707712 original size:37 final size:37
Alignment explanation
Indices: 156707662--156707739 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
156707652 TATAAAAGAA
156707662 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156707699 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156707736 GTCT
1 GTCT
156707740 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:156707902 original size:49 final size:49
Alignment explanation
Indices: 156707842--156707964 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
156707832 CATATATTTT
*
156707842 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
156707891 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
156707940 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
156707965 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:156711110 original size:40 final size:41
Alignment explanation
Indices: 156711066--156711164 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
156711056 TCGATTGTTC
* * **
156711066 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
156711106 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
156711147 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
156711165 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:156711685 original size:29 final size:29
Alignment explanation
Indices: 156711648--156711957 Score: 496
Period size: 29 Copynumber: 10.7 Consensus size: 29
156711638 TGTTGAAAAA
* *
156711648 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
156711677 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
156711706 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156711735 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156711764 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156711793 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156711822 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156711851 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
156711880 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
156711909 CTCGCACACATAGTGCCTCGGTTAATGGAAT
1 CTCGCACACACAGTGCCTCGATTACT-G-AT
*
156711940 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
156711958 TAATCATTCG
Statistics
Matches: 268, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
29 249 0.93
30 17 0.06
31 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:156714021 original size:37 final size:37
Alignment explanation
Indices: 156713971--156714048 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
156713961 TATAAAAGAA
156713971 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156714008 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
156714045 GTCT
1 GTCT
156714049 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:156714211 original size:49 final size:49
Alignment explanation
Indices: 156714151--156714273 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
156714141 CATATATTTT
*
156714151 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
156714200 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
156714249 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
156714274 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:156717420 original size:40 final size:41
Alignment explanation
Indices: 156717376--156717474 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
156717366 TCGATTGTTC
* * **
156717376 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
156717416 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
156717457 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
156717475 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:156717995 original size:29 final size:29
Alignment explanation
Indices: 156717958--156718267 Score: 496
Period size: 29 Copynumber: 10.7 Consensus size: 29
156717948 TGTTGAAAAA
* *
156717958 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
156717987 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* *
156718016 TTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156718045 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156718074 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156718103 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156718132 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
156718161 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
*
156718190 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
156718219 CTCGCACACATAGTGCCTCGGTTAATGGAAT
1 CTCGCACACACAGTGCCTCGATTACT-G-AT
*
156718250 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
156718268 TAATCATTCG
Statistics
Matches: 268, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
29 249 0.93
30 17 0.06
31 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:156724236 original size:40 final size:40
Alignment explanation
Indices: 156724027--156724212 Score: 363
Period size: 40 Copynumber: 4.7 Consensus size: 40
156724017 AACATTGGAA
156724027 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
156724067 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
156724107 ATATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
156724147 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
156724187 ATATATCCGGGCTAAGACCCGAAGGC
1 ATATATCCGGGCTAAGACCCGAAGGC
156724213 CTTTGTGCAA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:156724246 original size:120 final size:120
Alignment explanation
Indices: 156724027--156724276 Score: 358
Period size: 120 Copynumber: 2.1 Consensus size: 120
156724017 AACATTGGAA
156724027 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * * * * *
156724092 CATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG
66 CATTCGTGCAAGTTCACAAATCCGGACTAAGACCCGAAGGAAATCATGCGAGTCG
156724147 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* * * * *
156724212 CCTTTGTGCAAG-TCACCAAATCCGGATTATGACCCGAAGGAAATCGTGCGAGTCG
66 CATTCGTGCAAGTTCA-CAAATCCGGACTAAGACCCGAAGGAAATCATGCGAGTCG
*
156724267 CTATATCCGG
1 ATATATCCGG
156724277 TTAAATCCCG
Statistics
Matches: 115, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
119 2 0.02
120 113 0.98
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (120 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTTCACAAATCCGGACTAAGACCCGAAGGAAATCATGCGAGTCG
Found at i:156730189 original size:66 final size:68
Alignment explanation
Indices: 156730113--156730299 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
156730103 TAGTACCACT
*
156730113 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
156730175 CACG
65 CACG
156730179 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
156730244 ATCACG
63 ATCACG
156730250 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
156730300 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:156730224 original size:71 final size:71
Alignment explanation
Indices: 156730136--156730299 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
156730126 CGATTTGTCT
156730136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
156730201 CTTTCA
66 CTTTCA
156730207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
156730272 CTTTCA
66 CTTTCA
156730278 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
156730300 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:156730337 original size:71 final size:70
Alignment explanation
Indices: 156730136--156730333 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
156730126 CGATTTGTCT
* * *
156730136 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
156730201 CTTTCA
65 CTTTCA
* * *
156730207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
156730272 CTTTCA
65 CTTTCA
* *
156730278 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
156730334 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:156743636 original size:93 final size:93
Alignment explanation
Indices: 156743528--156743698 Score: 227
Period size: 93 Copynumber: 1.8 Consensus size: 93
156743518 GCCCATAAGT
* * * *
156743528 GAACTCGGACTCAACTCAACCAGCTC-AGGCGTCCGTATCCATAAGTGAACTCGAACTCAACTCA
1 GAACTCAGACTCAACTCAACCAGCTCGA-ACATCCGCATCCATAAGTGAACTCGAACTCAACTCA
156743592 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * ** *
156743621 GAACTCAGACTCAACTCAACGAGTTCGAATATTCGCATCTGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACCAGCTCGAACATCCGCATCCATAAGTGAACTCGAACTCAACTCAA
156743686 CGAGTTCGGATGC
66 CGAGTTCGGATGC
156743699 TCAACCATCC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
93 65 0.98
94 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACCAGCTCGAACATCCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:156743714 original size:46 final size:46
Alignment explanation
Indices: 156743523--156743714 Score: 128
Period size: 46 Copynumber: 4.2 Consensus size: 46
156743513 AACCCGCCCA
* * * ***
156743523 TAAGTGAACTCGGACTCAACTCAACCAGCTC--AGGCGTCCGTATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACATCC
*
156743568 ATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCC
* * * * ** * *
156743617 TCA-CGAACTCAGACTCAACTCAACGAGTTCGAATATTC-GCATCTG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATC-C
156743662 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
156743709 T-AGTGA
1 TAAGTGA
156743715 CATGTCACTT
Statistics
Matches: 110, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 64 0.58
47 28 0.25
48 10 0.09
49 1 0.01
50 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:156758858 original size:28 final size:29
Alignment explanation
Indices: 156758821--156758915 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
156758811 AAGTCTACAT
* *
156758821 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
156758849 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
156758878 ACATTCGTATGGCCCATTAGGCCCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
156758907 ACATACATA
1 ACATTCATA
156758916 GTCATGCTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.36
29 37 0.64
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:156758996 original size:17 final size:18
Alignment explanation
Indices: 156758974--156759007 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
156758964 TTGCCTATTA
156758974 TGGGCCC-TATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
156758991 TGGGCCCATTTAGCCCA
1 TGGGCCCATATAGCCCA
156759008 CTCTAGCCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.35, G:0.24, T:0.24
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:156763913 original size:40 final size:40
Alignment explanation
Indices: 156763786--156763915 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
156763776 ATGCTGGAAA
* *
156763786 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
156763826 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
156763866 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
156763906 TTATATCCGG
1 TTATATCCGG
156763916 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:156775935 original size:80 final size:80
Alignment explanation
Indices: 156775851--156775999 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
156775841 TATGGTAACC
* * * *
156775851 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
156775915 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
156775931 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
156775996 CCGG
66 CCGG
156776000 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:156775941 original size:40 final size:38
Alignment explanation
Indices: 156775892--156775999 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
156775882 ATCACGATTT
*
156775892 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
156775932 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
156775972 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
156776000 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:156778318 original size:21 final size:20
Alignment explanation
Indices: 156778294--156778333 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
156778284 CATGTATTTT
156778294 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
156778315 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
156778334 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:156778341 original size:20 final size:21
Alignment explanation
Indices: 156778299--156778341 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
156778289 ATTTTAATGA
*
156778299 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
156778320 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
156778340 TT
1 TT
156778342 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:156784137 original size:43 final size:43
Alignment explanation
Indices: 156784074--156784342 Score: 224
Period size: 43 Copynumber: 6.3 Consensus size: 43
156784064 GCCGTTAGGT
* ** * * * *
156784074 CATGTTCTCTAGTGGCGTTTGTGGGGAAAGCACCGCTAAAGAC
1 CATGTTCTTTAGCAGCGTTTGTGGGAAAAACGCCGCTAAAGGC
* * *
156784117 CATGTTCTTTAGCAGTGTTTGTGGGAAAAATGCCGCT--AGGT
1 CATGTTCTTTAGCAGCGTTTGTGGGAAAAACGCCGCTAAAGGC
* * * *
156784158 CATGCTCTTTAGCAGCATTTGTGAGG-AAAACGCTGCTAAGGGC
1 CATGTTCTTTAGCAGCGTTTGTG-GGAAAAACGCCGCTAAAGGC
* *
156784201 CATGTTCTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAGAC
1 CATGTTCTTTAGCAGCGTTTGTGGGAAAAA-CGCCGCTAAAGGC
* * * ** ** *
156784244 CATGCTCTTTAGCAGCATTTGTGGGGAAAGTGCTACCAAAGGC
1 CATGTTCTTTAGCAGCGTTTGTGGGAAAAACGCCGCTAAAGGC
* * *
156784287 CATGTTCTTTAGC-GACGGTTGTGGGAAAAACACCGCTAAAGGT
1 CATGTTCTTTAGCAG-CGTTTGTGGGAAAAACGCCGCTAAAGGC
*
156784330 CATGTTCTATAGC
1 CATGTTCTTTAGC
156784343 GGCATTTTCC
Statistics
Matches: 174, Mismatches: 45, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
41 33 0.19
42 7 0.04
43 129 0.74
44 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
CATGTTCTTTAGCAGCGTTTGTGGGAAAAACGCCGCTAAAGGC
Found at i:156784348 original size:86 final size:86
Alignment explanation
Indices: 156784091--156784349 Score: 294
Period size: 86 Copynumber: 3.0 Consensus size: 86
156784081 TCTAGTGGCG
* * * *
156784091 TTTGTGGGGAAAGCACCGCTAAAGACCATGTTCTTTAGC-A-GTGTTTGTGGGAAAAATGCCGCT
1 TTTGTGGGGAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGACG-G-TTGTGGGAAAAACGCCGCT
156784154 --AGGTCATGCTCTTTAGCAGCA
64 AAAGGTCATGCTCTTTAGCAGCA
* * * * *
156784175 TTTGTGAGGAAAACGCTGCTAAGGGCCATGTTCTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTA
1 TTTGTGGGGAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGACGGTTGTGGGAAAAA-CGCCGCTA
**
156784239 AAGACCATGCTCTTTAGCAGCA
65 AAGGTCATGCTCTTTAGCAGCA
* * * *
156784261 TTTGTGGGGAAAGTGCTACCAAAGGCCATGTTCTTTAGCGACGGTTGTGGGAAAAACACCGCTAA
1 TTTGTGGGGAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGACGGTTGTGGGAAAAACGCCGCTAA
* * *
156784326 AGGTCATGTTCTATAGCGGCA
66 AGGTCATGCTCTTTAGCAGCA
156784347 TTT
1 TTT
156784350 TCCTACATAA
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
83 7 0.05
84 43 0.30
86 87 0.60
87 7 0.05
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (86 bp):
TTTGTGGGGAAAGCGCTGCTAAAGGCCATGTTCTTTAGCGACGGTTGTGGGAAAAACGCCGCTAA
AGGTCATGCTCTTTAGCAGCA
Found at i:156789538 original size:49 final size:49
Alignment explanation
Indices: 156789406--156789557 Score: 169
Period size: 49 Copynumber: 3.0 Consensus size: 49
156789396 ACTCATCCAT
* * * * *
156789406 CTGAAACACCATTTGTGGACAAGCCACCACTGATTTGCAGGTAAATTGCCA
1 CTGAAACA-C-TTTGTGGACAAGCCACCATTGATATGCAGATATACTGCCA
* * * *
156789457 CTGATGACGCTTTATGGACAAGCCACCATTGATATGCAGATATGCTGCCA
1 CTGA-AACACTTTGTGGACAAGCCACCATTGATATGCAGATATACTGCCA
* * *
156789507 CTGAAACACTTTGTGGATAAGCCACCATTGATATGCATATATACTACCA
1 CTGAAACACTTTGTGGACAAGCCACCATTGATATGCAGATATACTGCCA
156789556 CT
1 CT
156789558 TACTTCCTAC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 40 0.48
50 37 0.44
51 5 0.06
52 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (49 bp):
CTGAAACACTTTGTGGACAAGCCACCATTGATATGCAGATATACTGCCA
Found at i:156791193 original size:30 final size:30
Alignment explanation
Indices: 156791157--156791216 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
156791147 TTCCCAAGCC
*
156791157 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
156791187 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
156791217 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:156797346 original size:15 final size:15
Alignment explanation
Indices: 156797319--156797364 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
156797309 TTTTGCCCGG
156797319 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
156797335 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
156797350 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
156797365 ACCTCCGAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:156797465 original size:13 final size:13
Alignment explanation
Indices: 156797447--156797526 Score: 77
Period size: 13 Copynumber: 6.8 Consensus size: 13
156797437 TCTTCACTCC
156797447 AACCACCCCACTA
1 AACCACCCCACTA
*
156797460 AACCA-CTC-C--
1 AACCACCCCACTA
156797469 AACCACCCCACTA
1 AACCACCCCACTA
156797482 AACCA-CCC-C--
1 AACCACCCCACTA
156797491 AACCACCCCACTA
1 AACCACCCCACTA
*
156797504 AACCACTCCACTA
1 AACCACCCCACTA
*
156797517 AACCATCCCA
1 AACCACCCCA
156797527 ACCACTCCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
9 10 0.19
10 5 0.09
11 4 0.07
12 5 0.09
13 30 0.56
ACGTcount: A:0.38, C:0.54, G:0.00, T:0.09
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:156797469 original size:22 final size:22
Alignment explanation
Indices: 156797441--156797513 Score: 137
Period size: 22 Copynumber: 3.3 Consensus size: 22
156797431 CAAATATCTT
156797441 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
156797463 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
*
156797485 CACCCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
156797507 CACTCCA
1 CACTCCA
156797514 CTAAACCATC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.36, C:0.56, G:0.00, T:0.08
Consensus pattern (22 bp):
CACTCCAACCACCCCACTAAAC
Found at i:156797486 original size:35 final size:34
Alignment explanation
Indices: 156797447--156797526 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 34
156797437 TCTTCACTCC
* *
156797447 AACCACCCCACTAAACCACTCCAACCACCCCACTA
1 AACCACCCCACCAAACCACT-AAACCACCCCACTA
** *
156797482 AACCACCCCAACCACCCCACTAAACCACTCCACTA
1 AACCACCCC-ACCAAACCACTAAACCACCCCACTA
*
156797517 AACCATCCCA
1 AACCACCCCA
156797527 ACCACTCCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 1 0.03
35 29 0.76
36 8 0.21
ACGTcount: A:0.38, C:0.54, G:0.00, T:0.09
Consensus pattern (34 bp):
AACCACCCCACCAAACCACTAAACCACCCCACTA
Found at i:156797527 original size:35 final size:35
Alignment explanation
Indices: 156797469--156797537 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
156797459 AAACCACTCC
156797469 AACCACCCCACTAAACCACCCCAACCACCCCACTA
1 AACCACCCCACTAAACCACCCCAACCACCCCACTA
* * *
156797504 AACCACTCCACTAAACCATCCCAACCACTCCACT
1 AACCACCCCACTAAACCACCCCAACCACCCCACT
156797538 TGCCTACAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.54, G:0.00, T:0.10
Consensus pattern (35 bp):
AACCACCCCACTAAACCACCCCAACCACCCCACTA
Found at i:156797530 original size:44 final size:44
Alignment explanation
Indices: 156797445--156797531 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
156797435 TATCTTCACT
** *
156797445 CCAACCACCCCACTAAACCACTCCAACCACCCCACTAAACCACC
1 CCAACCACCCCACTAAACCACTCCAACCAAACCACCAAACCACC
* *
156797489 CCAACCACCCCACTAAACCACTCC-ACTAAACCATCCCAACCAC
1 CCAACCACCCCACTAAACCACTCCAACCAAACCA-CCAAACCAC
156797532 TCCACTTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 6 0.16
44 31 0.84
ACGTcount: A:0.37, C:0.55, G:0.00, T:0.08
Consensus pattern (44 bp):
CCAACCACCCCACTAAACCACTCCAACCAAACCACCAAACCACC
Found at i:156797942 original size:19 final size:18
Alignment explanation
Indices: 156797905--156797946 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
156797895 GGAGAGAGTG
*
156797905 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
156797923 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
156797942 TTATT
1 TTATT
156797947 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:156798005 original size:33 final size:39
Alignment explanation
Indices: 156797931--156798012 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
156797921 TATTATTTTC
*
156797931 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
156797970 TATTACTATTA-TATTA-TAATA-CA-T-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
156798003 TATTACTATT
1 TATTACTATT
156798013 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
36 2 0.05
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:156800826 original size:19 final size:19
Alignment explanation
Indices: 156800804--156800846 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
156800794 CTTTCTTTTC
156800804 CATT-CATTCCATACATTTG
1 CATTACATTCCA-ACATTTG
*
156800823 CATTACATTGCAACATTTG
1 CATTACATTCCAACATTTG
156800842 CATTA
1 CATTA
156800847 AACTTTCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (19 bp):
CATTACATTCCAACATTTG
Found at i:156805614 original size:80 final size:80
Alignment explanation
Indices: 156805449--156805635 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
156805439 AATTGAATGA
* ** * * *
156805449 TATCCGGGCTAAGTCCCGAAGATGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
156805514 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
*
156805530 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
156805593 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
*
156805609 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
156805636 GTGCAAATCG
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 83 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:156805654 original size:40 final size:40
Alignment explanation
Indices: 156805485--156805639 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
156805475 AATGCTGGAA
* * *
156805485 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
** * * * *
156805525 GCTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTA
1 ATTATATCCGGGCTAAGACCCGAAGG-CATTTGTGCTAGTC
* *
156805565 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
*
156805605 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
156805640 AAATCGTGAT
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTC
Found at i:156813704 original size:78 final size:78
Alignment explanation
Indices: 156813545--156813725 Score: 187
Period size: 78 Copynumber: 2.3 Consensus size: 78
156813535 AATTGAATGA
** * * *
156813545 TATCCGGGCTAAGTCCCGA--ATGTTAATGCTGGAAATTATATCCGGTTAAGACCGAAGGCAATT
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGCTAAGACCGAAGGCAATT
*
156813608 GTGCTAGTGGCTAC
66 GTGCGAGT-GCTAC
*
156813622 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAG-TATTATATCCGGCTAAGACCCGAAGGC-AT
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGCTAAGA-CCGAAGGCAAT
*
156813684 TCGTGCGAGT-CATTC
65 T-GTGCGAGTGC-TAC
*
156813699 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
156813726 GTGCAAATCG
Statistics
Matches: 88, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
76 19 0.22
77 21 0.24
78 45 0.51
79 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (78 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGCTAAGACCGAAGGCAATT
GTGCGAGTGCTAC
Found at i:156813711 original size:40 final size:39
Alignment explanation
Indices: 156813579--156813729 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 39
156813569 AATGCTGGAA
* * *
156813579 ATTATATCC-GGTTAAGA-CCGAAGGCAATTGTGCTAGT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
** * * * *
156813616 GGCTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGT
1 -ATTATATCCGGGCTAAGACCCGAAGG-CATTTGTGCGAGT
*
156813656 ATTATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
*
156813694 CATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 -ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
156813730 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
38 27 0.30
39 26 0.29
40 38 0.42
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:156813743 original size:40 final size:40
Alignment explanation
Indices: 156813659--156813744 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
156813649 TGCTAGTATT
* * *
156813659 ATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
* * *
156813698 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
156813738 ATATCCG
1 ATATCCG
156813745 AGTTAAGTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 5 0.13
40 34 0.87
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATG
Found at i:156820405 original size:28 final size:28
Alignment explanation
Indices: 156820344--156820441 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
156820334 TCACAAATTG
** * *
156820344 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
156820373 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
156820401 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
156820429 GCACTAAGTGTGC
1 GCACTAAGTGTGC
156820442 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:156822102 original size:5 final size:5
Alignment explanation
Indices: 156822092--156822149 Score: 66
Period size: 5 Copynumber: 11.2 Consensus size: 5
156822082 TGAATCATCC
156822092 TATTT TATTT T-TATT TATTCT TATTTT TATTT TATTT TA-TT TATTT
1 TATTT TATTT TAT-TT TATT-T TA-TTT TATTT TATTT TATTT TATTT
156822138 TATTCT TATTT T
1 TATT-T TATTT T
156822150 TCTTTTTCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
4 5 0.11
5 28 0.60
6 12 0.26
7 2 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:156822105 original size:6 final size:6
Alignment explanation
Indices: 156822094--156822172 Score: 65
Period size: 6 Copynumber: 13.3 Consensus size: 6
156822084 AATCATCCTA
* *
156822094 TTTTAT TTTTA- -TTTAT TCTTAT TTTTA- TTTTAT TTTATTT ATTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT -TTTTAT
* * * *
156822141 TCTTAT TTTTCT TTTTCT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
156822173 CAATTTTCTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
4 4 0.07
5 5 0.08
6 43 0.73
7 4 0.07
8 3 0.05
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:156822143 original size:31 final size:31
Alignment explanation
Indices: 156822092--156822167 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
156822082 TGAATCATCC
*
156822092 TATTTTATTTTTATTTATTCTTATTTTTATTT
1 TATTTTATTTAT-TTTATTCTTATTTTTATTT
*
156822124 TATTTTATTTATTTTATTCTTATTTTTCTTT
1 TATTTTATTTATTTTATTCTTATTTTTATTT
*
156822155 T-TCTT-TTTATTTT
1 TATTTTATTTATTTT
156822168 CATTTCAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 8 0.20
30 3 0.07
31 19 0.46
32 11 0.27
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (31 bp):
TATTTTATTTATTTTATTCTTATTTTTATTT
Found at i:156827284 original size:29 final size:29
Alignment explanation
Indices: 156827242--156827302 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
156827232 AGTGGTCAAA
156827242 TATTCAGAATGGGTAGCCAATATTATTCC
1 TATTCAGAATGGGTAGCCAATATTATTCC
*
156827271 TATTTAGAATGGGTAGCCAATATTATTCC
1 TATTCAGAATGGGTAGCCAATATTATTCC
156827300 TAT
1 TAT
156827303 CCCTAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (29 bp):
TATTCAGAATGGGTAGCCAATATTATTCC
Found at i:156829427 original size:19 final size:19
Alignment explanation
Indices: 156829403--156829443 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
156829393 TTAAATTGTT
*
156829403 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
156829422 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
156829441 TTA
1 TTA
156829444 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:156831482 original size:39 final size:39
Alignment explanation
Indices: 156831426--156831560 Score: 234
Period size: 39 Copynumber: 3.5 Consensus size: 39
156831416 TTATATGATT
156831426 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
156831465 TAGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
156831504 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
156831543 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
156831561 TAAAGTCCCG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:156834313 original size:39 final size:39
Alignment explanation
Indices: 156834231--156834413 Score: 255
Period size: 39 Copynumber: 4.7 Consensus size: 39
156834221 GCTACTCGTT
* *
156834231 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
156834271 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
156834310 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * *
156834349 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAAC-TCGCA
156834389 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
156834414 CATCATTCGA
Statistics
Matches: 130, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
38 11 0.08
39 75 0.58
40 44 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:156838348 original size:41 final size:40
Alignment explanation
Indices: 156838221--156838434 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
156838211 GCTCGATTGT
* * * * * * *
156838221 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * *
156838261 CTTCGGGAATTAGCCCGGATTTGGTAACTAGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
*
156838301 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCAC-AAATGC
*
156838342 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATAC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * *
156838382 CTTCGGGACTTAACCTGGTTTTGGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGC
156838423 CTTCGGGACTTA
1 CTTCGGGACTTA
156838435 GCCCAGATAC
Statistics
Matches: 149, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 90 0.60
41 59 0.40
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:156838365 original size:81 final size:82
Alignment explanation
Indices: 156838248--156838434 Score: 254
Period size: 81 Copynumber: 2.3 Consensus size: 82
156838238 GTTATAGTGA
* * * * *
156838248 TTCGCAC-AATTGCCTTCGGGAATTAGCCCGGATTTGGTAACTAGCACGAATGCCTTCGGGACTT
1 TTCGCACAAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTAGCACAAATACCTTCGGGACTT
156838312 AACCCAGTTTTGGTAAC
66 AACCCAGTTTTGGTAAC
* *
156838329 -TCGCACAAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATACCTTCGGGACTT
1 TTCGCACAAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTAGCACAAATACCTTCGGGACTT
** *
156838393 AACCTGGTTTTGGTCAC
66 AACCCAGTTTTGGTAAC
*
156838410 TTAGCACAAAA-GCCTTCGGGACTTA
1 TTCGCACAAAATGCCTTCGGGACTTA
156838435 GCCCAGATAC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 6 0.06
81 78 0.84
82 9 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (82 bp):
TTCGCACAAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTAGCACAAATACCTTCGGGACTT
AACCCAGTTTTGGTAAC
Found at i:156845689 original size:39 final size:39
Alignment explanation
Indices: 156845607--156845788 Score: 246
Period size: 39 Copynumber: 4.7 Consensus size: 39
156845597 GCTACTCGTT
* *
156845607 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
156845647 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
156845686 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* * *
156845724 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAAC-TCGCA
156845764 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
156845789 CATCATTCGA
Statistics
Matches: 129, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
37 9 0.07
38 29 0.22
39 47 0.36
40 44 0.34
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:156845734 original size:77 final size:81
Alignment explanation
Indices: 156845607--156845788 Score: 252
Period size: 77 Copynumber: 2.3 Consensus size: 81
156845597 GCTACTCGTT
* *
156845607 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
156845670 GGATTAGTAAC-TCGCA
65 GGATTAGTAACTTAGCA
**
156845686 CAAATGCCTTC-GG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
156845748 GATTAGTCACTTAGCA
66 GATTAGTAACTTAGCA
156845764 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
156845789 CATCATTCGA
Statistics
Matches: 92, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
76 3 0.03
77 54 0.59
78 13 0.14
79 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATTAGTAACTTAGCA
Found at i:156851032 original size:29 final size:28
Alignment explanation
Indices: 156851000--156851100 Score: 96
Period size: 29 Copynumber: 3.5 Consensus size: 28
156850990 GTGACGAGAT
* *
156851000 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
156851029 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
156851058 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
156851087 TGGCACTAAGTGTG
1 TGGCACT-AGTGTG
156851101 TGTGATTGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
28 4 0.07
29 55 0.92
30 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.30
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:156856991 original size:29 final size:29
Alignment explanation
Indices: 156856959--156857031 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
156856949 CTTCGAGCTC
*
156856959 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
156856988 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
156857017 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
156857032 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:156864886 original size:40 final size:40
Alignment explanation
Indices: 156864828--156865003 Score: 156
Period size: 40 Copynumber: 4.7 Consensus size: 40
156864818 CGTTCAAACA
* * ***
156864828 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
156864868 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* *
156864908 CCTTCGGG-CTTAGCCCGGATATCA-TA---GCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* ** *
156864943 -C--CGGG-CTTAGCCCAGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
156864979 CCTTCGGG-CTTAGCCCGGATATCAC
1 CCTTCGGGACTTAGCCCGGATATCAC
156865004 TCGAACATTC
Statistics
Matches: 116, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
32 19 0.16
33 1 0.01
34 1 0.01
35 9 0.08
36 9 0.08
37 1 0.01
38 1 0.01
39 35 0.30
40 40 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:156864953 original size:32 final size:35
Alignment explanation
Indices: 156864899--156865002 Score: 124
Period size: 32 Copynumber: 2.9 Consensus size: 35
156864889 ATCACAACTC
156864899 GCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TA
1 GCACAATTGCC-TCGGGCTTAGCCCGGATATCATTA
* *
156864934 GCACAATTG-C-CGGGCTTAGCCCAGATATCACAATTC
1 GCACAATTGCCTCGGGCTTAGCCCGGATAT--C-ATTA
156864970 GCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCACAATTGCC-TCGGGCTTAGCCCGGATATCA
156865003 CTCGAACATT
Statistics
Matches: 59, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
32 17 0.29
34 2 0.03
35 10 0.17
36 11 0.19
37 2 0.03
39 17 0.29
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (35 bp):
GCACAATTGCCTCGGGCTTAGCCCGGATATCATTA
Found at i:156864993 original size:39 final size:38
Alignment explanation
Indices: 156864858--156865003 Score: 187
Period size: 39 Copynumber: 3.9 Consensus size: 38
156864848 TATGGTAACC
* *
156864858 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA-T
156864898 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT--C-AT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
* *
156864933 AGCACAATTG-C--CGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
156864969 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
156865004 TCGAACATTC
Statistics
Matches: 93, Mismatches: 6, Indels: 15
0.82 0.05 0.13
Matches are distributed among these distances:
32 17 0.18
34 2 0.02
35 11 0.12
36 11 0.12
37 2 0.02
39 33 0.35
40 17 0.18
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT
Found at i:156870523 original size:25 final size:25
Alignment explanation
Indices: 156870476--156870523 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
156870466 TTATAATATG
* * *
156870476 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
156870501 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
156870524 GTTTATGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:156870626 original size:20 final size:20
Alignment explanation
Indices: 156870560--156870626 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
156870550 ATTTTGATAA
*
156870560 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
156870580 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
156870600 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
156870620 ACGTGAT
1 ACATGAT
156870627 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:156870745 original size:46 final size:47
Alignment explanation
Indices: 156870678--156870773 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
156870668 GGAAGTGGAA
156870678 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
156870724 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
156870771 AAA
1 AAA
156870774 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 23 0.48
47 25 0.52
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Done.