Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 507 of 770
Found at i:156870756 original size:24 final size:24
Alignment explanation
Indices: 156870677--156870794 Score: 179
Period size: 23 Copynumber: 5.0 Consensus size: 24
156870667 AGGAAGTGGA
156870677 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
156870701 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
156870724 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
156870747 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
156870771 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
156870795 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.52
24 31 0.35
25 11 0.12
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:156871023 original size:31 final size:31
Alignment explanation
Indices: 156870988--156871051 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
156870978 CGTTTACCGT
*
156870988 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
156871019 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
156871050 AA
1 AA
156871052 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:156873133 original size:10 final size:10
Alignment explanation
Indices: 156873115--156873147 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
156873105 AAGGTTAGGA
*
156873115 TATGACACAC
1 TATGCCACAC
156873125 TATGCCACAC
1 TATGCCACAC
156873135 TATGCCACAC
1 TATGCCACAC
156873145 TAT
1 TAT
156873148 TATAACTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.09, T:0.24
Consensus pattern (10 bp):
TATGCCACAC
Found at i:156876279 original size:2 final size:2
Alignment explanation
Indices: 156876272--156876304 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
156876262 GATTTCTACA
156876272 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
156876305 TTTTCTATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:156877402 original size:26 final size:26
Alignment explanation
Indices: 156877373--156877425 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
156877363 TATCACATGT
156877373 ACTTGTCATGCATTTATTAATCATTC
1 ACTTGTCATGCATTTATTAATCATTC
156877399 ACTTGTCATGCATTTATTAATCATTC
1 ACTTGTCATGCATTTATTAATCATTC
156877425 A
1 A
156877426 TTATTGAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (26 bp):
ACTTGTCATGCATTTATTAATCATTC
Found at i:156878124 original size:17 final size:17
Alignment explanation
Indices: 156878077--156878126 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
156878067 TACAAAGTTT
* *
156878077 CACACGGCTATGTCCCC
1 CACACGGCTCTGTGCCC
*
156878094 CACACGG-TCGTGTGCTC
1 CACACGGCTC-TGTGCCC
156878111 CACACGGCTCTGTGCC
1 CACACGGCTCTGTGCC
156878127 ATTGGGAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 1 0.04
17 24 0.89
18 2 0.07
ACGTcount: A:0.14, C:0.42, G:0.24, T:0.20
Consensus pattern (17 bp):
CACACGGCTCTGTGCCC
Found at i:156881057 original size:12 final size:11
Alignment explanation
Indices: 156881029--156881057 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
156881019 ATGCAATGTT
156881029 CTAAAAACATC
1 CTAAAAACATC
156881040 CTAAAAACATC
1 CTAAAAACATC
156881051 CTAAAAA
1 CTAAAAA
156881058 TACAAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.59, C:0.24, G:0.00, T:0.17
Consensus pattern (11 bp):
CTAAAAACATC
Found at i:156882823 original size:43 final size:43
Alignment explanation
Indices: 156882753--156882902 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
156882743 AGCATATACA
* * * *
156882753 ATGCCTACGTCCCAGACGTGGTGTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAAATCG
*
156882796 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AAGTCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAA-TCAAAAATCG
* * * **
156882838 ATGCCGATGTCCCAGACGTGGTCTTACACATAAAAAAAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAAATCG
*
156882881 ATGCCAACGTCCCAGACATGGT
1 ATGCCAACGTCCCAGACGTGGT
156882903 TTTAAACAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 34 0.38
43 53 0.60
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAAATCG
Found at i:156882922 original size:43 final size:43
Alignment explanation
Indices: 156882792--156882924 Score: 103
Period size: 43 Copynumber: 3.1 Consensus size: 43
156882782 GTAATCAAAC
* ** **
156882792 ATCGATGCC-ACTGTCCCAGACAGGGTCTT--ACACGAAGTCAA
1 ATCGATGCCAAC-GTCCCAGACATGGTCTTAAACATAAAAACAA
* * * * *
156882833 ATACGATGCCGATGTCCCAGACGTGGTCTTACACATAAAAAAAA
1 AT-CGATGCCAACGTCCCAGACATGGTCTTAAACATAAAAACAA
* *
156882877 ATCGATGCCAACGTCCCAGACATGGTTTTAAACA-ATAACACAA
1 ATCGATGCCAACGTCCCAGACATGGTCTTAAACATA-AAAACAA
156882920 ATCGA
1 ATCGA
156882925 AATCCTATGT
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
41 2 0.03
42 23 0.32
43 38 0.53
44 9 0.12
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (43 bp):
ATCGATGCCAACGTCCCAGACATGGTCTTAAACATAAAAACAA
Found at i:156886616 original size:39 final size:39
Alignment explanation
Indices: 156886568--156886830 Score: 373
Period size: 39 Copynumber: 6.7 Consensus size: 39
156886558 TGTGTGAGAT
** *
156886568 TTATATCCGGGCTAAGTCCCAAAGGCATTTTTGCAGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
* *
156886607 TTATATCCGGGCTAAGTCTCAAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
* *
156886646 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
*
156886685 TTATATCCGGGCTAAGTTCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
* * *
156886724 TTATATCCGGGCCAAGTCCCAAAGGTATCCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
* * * *
156886763 TTATATCCGGGCTAAGTCCCGAAGGTATTCCTGCTAGTG
1 TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
* *
156886802 TTATATCCGGGCTAAGTCTCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCAAAGGCATT
156886831 TGTATTGGAA
Statistics
Matches: 202, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 202 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
Found at i:156886774 original size:117 final size:117
Alignment explanation
Indices: 156886530--156886830 Score: 392
Period size: 117 Copynumber: 2.6 Consensus size: 117
156886520 TAATTGAGGA
* * * *
156886530 TTATAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGAT-TTATATCCGGGCTAAGTCCCAAAG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TGTTATATCCGGGCTAAGTCCCAAAG
** * * *
156886592 GCATTTTTGCAGGTGTTATATCCGGGCTAAGTCTCAAAGGCATTCATGCTGGTG
64 GCATTCGTGCAGGTGTTATATCCGGGCCAAGTCCCAAAGGCATCCATGCTGGTG
* *
156886646 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTTCCAAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGGC
* * *
156886711 ATTCGTGCTGGTGTTATATCCGGGCCAAGTCCCAAAGGTATCCGTGCTGGTG
66 ATTCGTGCAGGTGTTATATCCGGGCCAAGTCCCAAAGGCATCCATGCTGGTG
* * * * *
156886763 TTATATCCGGGCTAAGTCCCGAAGGTATTCCTGCTAGTGTTATATCCGGGCTAAGTCTCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGGC
156886828 ATT
66 ATT
156886831 TGTATTGGAA
Statistics
Matches: 161, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
116 25 0.16
117 134 0.83
118 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (117 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGGC
ATTCGTGCAGGTGTTATATCCGGGCCAAGTCCCAAAGGCATCCATGCTGGTG
Found at i:156890097 original size:68 final size:66
Alignment explanation
Indices: 156890025--156890326 Score: 180
Period size: 68 Copynumber: 4.6 Consensus size: 66
156890015 TCATGTGTAC
156890025 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
1 AAGAGAGCTAC-AGACATTAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
156890090 GAA
64 GAA
** * * * *** *
156890093 AAGAGAGCTAC-GGGA-TATATGTAGCTAGGTCGCATGCGTGGTTCCCCG-GTTGA-ACC-T-TC
1 AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCATGTA
*
156890152 GGA
64 GAA
* ** * ** * * *
156890155 AAGATTGGATGATACAG--ATGGTATGTAGCTAGGTCACATGTAT-AGTGCTGA-GTGCACATCA
1 AAGA---GA-GCTACAGACATTATATGTAGCTAGGTCGCATGGGTGA-TACT-ATGTGTACACCA
*
156890216 TGT-GTAC
60 TGTAG-AA
*
156890223 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTTATACTATGTGTACACCATGTA
1 AAGAGAGCTAC-AGACATTAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
*
156890288 GAC
64 GAA
**
156890291 AAGAGAGCTAC-GGGA-TATATGTAGCTAGGTCGCATG
1 AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATG
156890327 CGTGGTTCCA
Statistics
Matches: 177, Mismatches: 35, Indels: 48
0.68 0.13 0.18
Matches are distributed among these distances:
62 7 0.04
63 2 0.01
64 50 0.28
65 15 0.08
66 32 0.18
67 8 0.05
68 61 0.34
69 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (66 bp):
AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGA
A
Found at i:156890281 original size:198 final size:198
Alignment explanation
Indices: 156889943--156890335 Score: 768
Period size: 198 Copynumber: 2.0 Consensus size: 198
156889933 AGAAACGCCA
156889943 GTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGA
1 GTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGA
156890008 GTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATAC
66 GTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATAC
156890073 TATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC
131 TATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC
156890138 CCG
196 CCG
156890141 GTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGA
1 GTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGA
*
156890206 GTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTTATAC
66 GTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATAC
*
156890271 TATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC
131 TATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC
156890336 AACTGAAGGA
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 193 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (198 bp):
GTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGA
GTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATAC
TATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC
CCG
Found at i:156890418 original size:198 final size:195
Alignment explanation
Indices: 156889946--156890428 Score: 580
Period size: 198 Copynumber: 2.4 Consensus size: 195
156889936 AACGCCAGTT
* ** * * *
156889946 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATG-AGCTAGGTCACATGGATAGTACTAAGTG
*
156890011 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
63 CACACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
156890076 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCG
128 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCG
***
156890141 GTT
193 AAG
* ** * * *
156890144 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATG-AGCTAGGTCACATGGATAGTACTAAGTG
* *
156890209 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTTATACTAT
63 CACACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
*
156890274 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAC
128 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCC--C
*
156890339 TGAAG
191 CGAAG
* * *
156890344 GACACCATGT-AGACAAGA-GA-GCTACGAGAT-AAACTG-GCTAGGTCACATGGGTGGTACTAA
1 GA-ACC-T-TCAGA-AAGATGATGATAC-AGATGAAA-TGAGCTAGGTCACATGGATAGTACTAA
**
156890404 GTGTTCACCATGTGTACAAGAGAGC
60 GTGCACACCATGTGTACAAGAGAGC
156890429 CAAACTATAT
Statistics
Matches: 259, Mismatches: 18, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
198 231 0.89
199 5 0.02
200 12 0.05
201 3 0.01
202 3 0.01
203 5 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (195 bp):
GAACCTTCAGAAAGATGATGATACAGATGAAATGAGCTAGGTCACATGGATAGTACTAAGTGCAC
ACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG
TACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCGAAG
Found at i:156898719 original size:40 final size:40
Alignment explanation
Indices: 156898653--156898808 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
156898643 ATTCGGATTG
*
156898653 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * * *
156898692 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGATACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
156898732 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
156898772 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTT
156898809 TGTGACAACC
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.12
40 94 0.88
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:156909537 original size:40 final size:40
Alignment explanation
Indices: 156909431--156909638 Score: 196
Period size: 40 Copynumber: 5.3 Consensus size: 40
156909421 ATTCAGATTG
* * *
156909431 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGT--T
1 ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGT-TACT
* * ** * *
156909469 AT-A-TGGGCTAAGTCCCGACGGCATTTGTGCGAGATACT
1 ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGTTACT
*
156909507 ATAACCGGGCCAAGTCCCAAAAGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGTTACT
* *
156909547 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGTTACT
* * * *
156909587 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGTTA-CT
*
156909627 ATATCC-GGCTAA
1 ATAACCGGGCTAA
156909639 CCCCGAAGGT
Statistics
Matches: 148, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
36 9 0.06
37 20 0.14
38 5 0.03
39 9 0.06
40 105 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCAAAAGCAATTGTGCGAGTTACT
Found at i:156909562 original size:80 final size:80
Alignment explanation
Indices: 156909473--156909647 Score: 230
Period size: 80 Copynumber: 2.2 Consensus size: 80
156909463 AGTGTTATAT
* * *
156909473 GGGCTAAGTCCCGACGGCATTTGTGCGAGATACTATAACCGGGCCAAGTCCCAAAAGCAATTGTG
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCCAAGTCCCAAAAGCAATTGAG
156909538 CGAGTTA-CTATAACC
66 CGAG-TAGCTATAACC
* * * * *
156909553 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAG
1 GGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCCAAGTCCCAAAAGCAATTGAG
*
156909618 CGAGTAGCTATATCC
66 CGAGTAGCTATAACC
*
156909633 -GGCTAA-CCCCGAAGG
1 GGGCTAAGTCCCGAAGG
156909648 TACTTGGTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 8 0.10
79 8 0.10
80 68 0.81
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCCAAGTCCCAAAAGCAATTGAG
CGAGTAGCTATAACC
Found at i:156914460 original size:189 final size:189
Alignment explanation
Indices: 156914140--156914517 Score: 738
Period size: 189 Copynumber: 2.0 Consensus size: 189
156914130 ACCATAGCTC
156914140 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
1 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
156914205 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
66 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
156914270 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
131 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
* *
156914329 TGATACCAATAAAATTGTAACACCCCTAACTCTTGACCGACGCCGGTGTCGGACACGAGGGGTTA
1 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
156914394 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
66 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
156914459 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
131 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
156914518 CCCTGAATTT
Statistics
Matches: 187, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (189 bp):
TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
Found at i:156915821 original size:29 final size:29
Alignment explanation
Indices: 156915793--156915894 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
156915783 CCTCCGAGCT
** * * *
156915793 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
156915822 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156915851 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
156915880 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
156915895 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:156922505 original size:189 final size:189
Alignment explanation
Indices: 156922185--156922563 Score: 731
Period size: 189 Copynumber: 2.0 Consensus size: 189
156922175 ACCATAGCTC
156922185 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
1 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
156922250 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
66 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
156922315 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGCTTCGTAAATTT
131 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGCTTCGTAAATTT
* *
156922374 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCTGGTGTCGGACACGAGGGGTTA
1 TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
156922439 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
66 ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
*
156922504 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGTTTCGTAAATTT
131 CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGCTTCGTAAATTT
156922563 T
1 T
156922564 CCCTGAATTT
Statistics
Matches: 187, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (189 bp):
TGATACCAATAAAATTGTAACACCCCTAACTCGTGACCGACGCCGGTGTCGGACACCAGGGGTTA
ACGGCCAAACCCTCTCAAGATGCCAACCAATTTGACATTACCAGTCAGGCTGGAAAACTGCGTCA
CCGTCGCCTTAAAAATCATATCTCGAGTTTCAAAACTCGGAAACTGGCTTCGTAAATTT
Found at i:156924117 original size:46 final size:49
Alignment explanation
Indices: 156923991--156924120 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 49
156923981 GCCTGTCACA
*
156923991 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GATGACTAGTT
* * *
156924041 ACAT-C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-A-GAC-A-TT
1 GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGATGACTAGTT
156924083 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 -GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTT
156924121 TGGATGCTCA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 3 0.04
45 3 0.04
46 25 0.36
47 26 0.38
48 2 0.03
49 1 0.01
50 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (49 bp):
GCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGATGACTAGTT
Found at i:156924143 original size:46 final size:44
Alignment explanation
Indices: 156924000--156924143 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
156923990 AGCATCCATA
*
156924000 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTAGGATGCC-A---ACCATCT
* * * * *
156924047 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTT-AG-GATGC-CAACCATCT
*
156924093 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTAGGATGC-CAACCAT-CT
156924139 AGTGA
1 AGTGA
156924144 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 30 0.39
47 28 0.37
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTAGGATGCCAACCATCT
Found at i:156934475 original size:35 final size:35
Alignment explanation
Indices: 156934436--156934508 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
156934426 AAACATTCTT
*
156934436 TATTCTCGTCAGATCACTCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
156934471 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
156934506 TAT
1 TAT
156934509 ATCACATACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:156941636 original size:10 final size:11
Alignment explanation
Indices: 156941614--156941643 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
156941604 ATATGTGAAT
156941614 ATATCATGTGC
1 ATATCATGTGC
156941625 ATATCATG-GC
1 ATATCATGTGC
156941635 ATATCATGT
1 ATATCATGT
156941644 ACAAAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:156943057 original size:46 final size:46
Alignment explanation
Indices: 156942990--156943163 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 46
156942980 TGTAACCCGC
*
156942990 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGCTCGCAT
* * * *
156943036 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G-GGCGCTCGCAT
* *** * *
156943082 ACATCTCTCGAACTCGGACTTAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGCGCTCGCAT
156943129 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
156943164 AATGCCCAAA
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGCTCGCAT
Found at i:156950401 original size:40 final size:40
Alignment explanation
Indices: 156950342--156950483 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
156950332 AAATTGAATG
* * *
156950342 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
156950382 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
156950422 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
156950462 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
156950484 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:156950507 original size:40 final size:39
Alignment explanation
Indices: 156950380--156950509 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
156950370 ATGCTGGAAA
* * *
156950380 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
156950421 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
156950459 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
156950500 TTATATCCGG
1 TTATATCCGG
156950510 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:156966783 original size:29 final size:28
Alignment explanation
Indices: 156966683--156966786 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 28
156966673 GTGACGAGAT
*
156966683 TGGCACTAAGTGTGC-AAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAA-CTT-AAATATA
* * *
156966712 TGGCACTAAGTGTGCGAGCTCAACTTTATA
1 TGGCACTAAGTGTGCGAACTTAA--ATATA
* *
156966742 TGGCACTATGTGTGCGAACTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAAT-ATA
156966771 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
156966787 TGATCGAGTC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
28 3 0.05
29 34 0.56
30 24 0.39
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAACTTAAATATA
Found at i:156968206 original size:2 final size:2
Alignment explanation
Indices: 156968199--156968223 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
156968189 AACAAATAAA
156968199 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
156968224 AAGGGGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:156971580 original size:7 final size:6
Alignment explanation
Indices: 156971532--156971577 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
156971522 TTGCTTTCCC
* * * *
156971532 TTTTGT TTTTGT TTTTGT TTTTAT TTTTAT TTTTAT TTTCAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
156971578 CATGTTCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.09, C:0.02, G:0.07, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:156977984 original size:39 final size:39
Alignment explanation
Indices: 156977932--156978114 Score: 224
Period size: 39 Copynumber: 4.6 Consensus size: 39
156977922 AATGTTCGAG
156977932 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
156977971 TGATATCCAGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
156978010 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
** *
156978049 TGATATCCGGG-TCAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCT-AAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
156978089 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
156978115 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 85 0.69
40 37 0.30
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:156981299 original size:68 final size:66
Alignment explanation
Indices: 156981226--156981397 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
156981216 CATCATGTGT
* * * *
156981226 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
156981289 TGTAG
62 TGTAG
** * *
156981294 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
156981359 AG
65 AG
* * * *
156981361 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
156981398 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:156981331 original size:64 final size:64
Alignment explanation
Indices: 156981250--156981429 Score: 195
Period size: 67 Copynumber: 2.8 Consensus size: 64
156981240 AGACATTATG
* * *
156981250 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
156981314 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
156981379 AA
63 AA
* * *
156981381 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGA
156981430 AAGCCGAACT
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 25 0.26
66 21 0.22
67 33 0.35
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:156984692 original size:16 final size:16
Alignment explanation
Indices: 156984671--156984707 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
156984661 TTAAATCAAG
156984671 TTCATGAGTTTCTAAT
1 TTCATGAGTTTCTAAT
156984687 TTCATGAGTTTCTAAT
1 TTCATGAGTTTCTAAT
156984703 TTCAT
1 TTCAT
156984708 TACTTCAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.11, T:0.51
Consensus pattern (16 bp):
TTCATGAGTTTCTAAT
Found at i:156986399 original size:93 final size:93
Alignment explanation
Indices: 156986266--156986436 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
156986256 GCCCCTAAGT
* * *
156986266 GAACTCGGACTCAGCTCAACAAGCTCAGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
156986331 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
156986359 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAGCTCA
1 GAACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
156986423 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
156986437 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:156986426 original size:46 final size:46
Alignment explanation
Indices: 156986261--156986433 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
156986251 AACCCGCCCC
* * * * * *
156986261 TAAGTGAACTCGGACTCAGCTCAACAAGCTCAGG-CGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* *
156986307 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
156986355 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
156986400 TAAGTGAACTCGGACTCAGCTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
156986434 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 56 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:156986452 original size:46 final size:45
Alignment explanation
Indices: 156986309--156986452 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
156986299 CGTATCCATA
156986309 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
156986356 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
*
156986402 AGTGAACTCGGACTCAGCTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
156986448 AGTGA
1 AGTGA
156986453 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.41
47 31 0.40
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:156986893 original size:30 final size:30
Alignment explanation
Indices: 156986859--156986918 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
156986849 ATTTAATACG
156986859 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
156986889 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
156986919 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:156989120 original size:2 final size:2
Alignment explanation
Indices: 156989113--156989145 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
156989103 TCATGACATG
156989113 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
156989146 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:156991189 original size:29 final size:29
Alignment explanation
Indices: 156991121--156991245 Score: 146
Period size: 29 Copynumber: 4.3 Consensus size: 29
156991111 AAGTCTACAT
* * *
156991121 ACATGCATATGGCCCACTGGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
156991149 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
156991178 ATATTCGA-ATGGCCCGTTAGGCCCAAATC
1 ACATTC-ATATGGCCCATTAGGCCCAAATC
* * *
156991207 ACATTCATACGGCTCATTAGGCTCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
156991236 ACATTCATAT
1 ACATTCATAT
156991246 ACATGCTTTC
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
28 21 0.26
29 59 0.73
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:156996251 original size:39 final size:39
Alignment explanation
Indices: 156996167--156996319 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
156996157 TATGGTAACC
** * *
156996167 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
156996207 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
156996246 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
156996285 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
156996320 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 86 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:156996293 original size:78 final size:79
Alignment explanation
Indices: 156996136--156996318 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
156996126 TCGTTCAAAC
* * **
156996136 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
156996201 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** * *
156996216 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
156996280 CAATTTGCACAATT
66 CAATTTGCACAATT
156996294 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
156996319 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:157004170 original size:38 final size:39
Alignment explanation
Indices: 157004057--157004199 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
157004047 CCGCACAAAG
*
157004057 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
157004097 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
157004136 GCCTTCGGGCTTAGCCC-GATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
157004174 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
157004200 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:157004176 original size:77 final size:79
Alignment explanation
Indices: 157004017--157004198 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
157004007 TCGTTCAAAC
* * **
157004017 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
157004082 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
157004097 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCC-GATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
157004160 CAATTTGCACAATT
66 CAATTTGCACAATT
157004174 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
157004199 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 46 0.49
78 7 0.07
79 32 0.34
80 9 0.10
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:157019035 original size:40 final size:40
Alignment explanation
Indices: 157018990--157019169 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
157018980 TTCGAATGAT
157018990 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
*
157019030 ATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
157019070 ATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
157019110 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
157019151 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
157019170 ACAATCGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:157019126 original size:80 final size:81
Alignment explanation
Indices: 157018990--157019209 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 81
157018980 TTCGAATGAT
* *
157018990 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATT
1 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
* *
157019055 TGTGCGAGTTACTA-A
66 TGCGCGAATTACTATA
* *
157019070 ATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
157019135 TGCGCGAATTACTATA
66 TGCGCGAATTACTATA
* * * * * * *
157019151 A-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAT-TCCCGAAGGCAATTGTGCGAGTTA-CCAAATCCGGGTTAAATCCCGAAGG
157019210 TACGTGATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 18 0.15
80 102 0.84
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (81 bp):
ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
TGCGCGAATTACTATA
Found at i:157019203 original size:120 final size:119
Alignment explanation
Indices: 157018990--157019209 Score: 284
Period size: 120 Copynumber: 1.8 Consensus size: 119
157018980 TTCGAATGAT
* * * * * *
157018990 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAAATCCCGAAGACAAT
* *
157019055 TGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGTGAGTTACCAA
66 CGAGCGAGTTACTAAATCCGGGTTAATT-CCGAAGGCAATTGTGTGAGTTACCAA
**
157019110 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCTATGTCCCGAAGACAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAATCCCGAAGACAA
*
157019174 TCGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
65 TCGAGCGAGTTA-CTAAATCCGGGTT-AATTCCGAAGG
157019210 TACGTGATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
119 13 0.15
120 71 0.83
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (119 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAAATCCCGAAGACAAT
CGAGCGAGTTACTAAATCCGGGTTAATTCCGAAGGCAATTGTGTGAGTTACCAA
Found at i:157023628 original size:46 final size:46
Alignment explanation
Indices: 157023561--157023732 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
157023551 ACCCGCCCAT
*
157023561 AAGTGAACTCGGACTCAACTCAACGAGCTTAGGAATTCGTATCCAC
1 AAGTGAACTCGGACTCAACTCAACGAGCTTCGGAATTCGTATCCAC
* * *
157023607 AAGTGAACTCGGACTCAACTCAACGAGC-TCGG-ATGCCTAGT-TAC
1 AAGTGAACTCGGACTCAACTCAACGAGCTTCGGAATTCGTA-TCCAC
** * *
157023651 ATCTCTCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCAT
1 A--AGT-GAACTCGGACTCAACTCAACGAGCTTCGGA-ATTCGTATCCAC
157023700 AAGTGAACTCGGACTCAACTCAACGAG-TTCGGA
1 AAGTGAACTCGGACTCAACTCAACGAGCTTCGGA
157023733 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
44 8 0.08
45 4 0.04
46 58 0.55
47 28 0.27
48 1 0.01
49 6 0.06
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGCTTCGGAATTCGTATCCAC
Found at i:157023680 original size:93 final size:93
Alignment explanation
Indices: 157023565--157023735 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
157023555 GCCCATAAGT
*
157023565 GAACTCGGACTCAACTCAACGAGCTTAGGA-ATTCGTATCCACAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTAGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
157023629 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
157023658 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
*
157023723 CGAGTTCGGATGC
66 CGAGCTCGGATGC
157023736 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 5 0.07
93 68 0.93
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:157029179 original size:46 final size:46
Alignment explanation
Indices: 157029055--157029181 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 46
157029045 ATGTAACCCG
** *** *
157029055 TCCATAAGTGAACTCAGACTCAACTCAACGAGCACGGGCGTTCGCA
1 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCAAACATTCGCA
157029101 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCAAACATTCGCA
1 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCAAACATTCGCA
**
157029147 TCCATAAGTGAACTTGGACTCAACTCAACGAGTTC
1 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTC
157029182 GGATGCTCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.21
Consensus pattern (46 bp):
TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCAAACATTCGCA
Found at i:157032088 original size:9 final size:9
Alignment explanation
Indices: 157032074--157032099 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
157032064 ATGGCAGATG
157032074 CTTTGGCTA
1 CTTTGGCTA
157032083 CTTTGGCTA
1 CTTTGGCTA
157032092 CTTTGGCT
1 CTTTGGCT
157032100 TCCATTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (9 bp):
CTTTGGCTA
Found at i:157033557 original size:55 final size:54
Alignment explanation
Indices: 157033473--157033633 Score: 202
Period size: 55 Copynumber: 2.9 Consensus size: 54
157033463 GGAAGGAAAT
*
157033473 CAAAGTGAAAACCCTCAAAGGGCGCTTTGAGACTTTCAAA-AAAAA-AAAAAGAGGC
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGAC-TT-AAATAAAAAGAAAAAG-GGC
*
157033528 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGAC-TAAATAAAAATGAAAATGGGC
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTTAAATAAAAA-GAAAAAGGGC
*
157033582 CAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAATATAAAAAGAAA
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACT---TAA-ATAAAAAGAAA
157033634 GAGAAAAAGG
Statistics
Matches: 95, Mismatches: 3, Indels: 13
0.86 0.03 0.12
Matches are distributed among these distances:
52 3 0.03
53 6 0.06
54 35 0.37
55 37 0.39
58 7 0.07
59 7 0.07
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (54 bp):
CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTTAAATAAAAAGAAAAAGGGC
Found at i:157033594 original size:54 final size:53
Alignment explanation
Indices: 157033473--157033631 Score: 205
Period size: 54 Copynumber: 2.9 Consensus size: 53
157033463 GGAAGGAAAT
*
157033473 CAAAGTGAAAACCCTCAAAGGGCGCTTTGAGACTTTCAAA-AAAAAAAAAAGAGGC
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGAC--T-AAATAAAAAAAAAAGAGGC
*
157033528 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTAAATAAAAATGAAAATG-GGC
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTAAATAAAAA--AAAAAGAGGC
* * * *
157033582 CAAAGTGAAAACCCGCAAAGGGCGCTTTGAGACTCAATAATATAAAAAGA
1 CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTAAATAAAAAAAAAAGA
157033632 AAGAGAAAAA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
52 8 0.09
53 6 0.06
54 42 0.45
55 37 0.40
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (53 bp):
CAAAGTGAAAACCCACAAAGGGCGCTTTGAGACTAAATAAAAAAAAAAGAGGC
Found at i:157035256 original size:44 final size:46
Alignment explanation
Indices: 157035184--157035279 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 46
157035174 GGCCACTAAC
** * *
157035184 CTTATC-TCTCTGAGGTAGCAAGAGAGTAGGTTGAAGA-TGATAGT
1 CTTATCTTCTCTGAGGTAGCAAGAGAGTAGACTGAAGATTGAAAAT
157035228 CTTATCTTC-CTGAGGTAGCAAG-GAAGTAGACTGAAGATTGAAAAT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGTAGACTGAAGATTGAAAAT
157035273 CTTATCT
1 CTTATCT
157035280 CCCTAAGTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
43 1 0.02
44 30 0.67
45 14 0.31
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGTAGACTGAAGATTGAAAAT
Found at i:157035282 original size:177 final size:175
Alignment explanation
Indices: 157034782--157035507 Score: 892
Period size: 177 Copynumber: 4.1 Consensus size: 175
157034772 CAAATAAAAA
* * *
157034782 ATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTCATCTCTCTAA
1 ATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACTAGCCTCATCTCTCTGA
* *
157034847 GGTAGCAAGAGAGCAGGTTGAAGAATGAG--TTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAA
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAA
** * * * *
157034910 GATTGAAGATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAA
131 GATTGAAGATCTTATCTCCCT-AAGCAGTAGCGGAGCAGATCGAAG
* * * * *
157034956 ATGGTGAATCTTATTTCTATGTATCGACGATGGAGAAGATTTTACCACTAGCCTCATCTCTCTGA
1 ATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACTAGCCTCATCTCTCTGA
* * * *
157035021 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAAACTAAA
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAA
*
157035086 GATTGAAGATCCTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
131 GATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
* * * * * *
157035131 ATGGCGAATCTTATTTCCATGTATCGAAAATTGAGCAGATTTTGGCCACTAACCTTATCTCTCTG
1 ATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTT-ACCACTAGCCTCATCTCTCTG
* * *
157035196 AGGTAGCAAGAGAGTAGGTTGAAG-ATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACT
65 AGGTAGCAAGAGAGCAGGTTGAAGAATG--AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACT
* *
157035260 GAAGATTGAAAATCTTATCTCCCTAAGTAGTAGCGGAGCAGATCGGAAG
128 GAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-GAAG
* * * *
157035309 A-GGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCTTTATCTCTCTG
1 ATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTA-CCACTAGCCTCATCTCTCTG
* * *
157035373 AGGTAGCAAGAGAGCAGGTTG--GCAATTGGAGTCTTATTTTCTTGAGGTAGCAAAGAAGCAAAC
65 AGGTAGCAAGAGAGCAGGTTGAAG-AA-T-GAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAAC
* * * * * * *
157035436 TGAAGATTGAAGATC-TATTTCCCGAAGCAGTTGTGGAGTAGATTGAGG
127 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
157035484 ATGGC-AGATCTTATCTCCATGTAT
1 ATGGCGA-ATCTTATCTCCATGTAT
157035508 TAGTGATGGA
Statistics
Matches: 480, Mismatches: 59, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
174 88 0.18
175 64 0.13
176 133 0.28
177 188 0.39
178 6 0.01
179 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (175 bp):
ATGGCGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTACCACTAGCCTCATCTCTCTGA
GGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAA
GATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
Found at i:157035522 original size:353 final size:348
Alignment explanation
Indices: 157034782--157035525 Score: 930
Period size: 353 Copynumber: 2.1 Consensus size: 348
157034772 CAAATAAAAA
* ** * *
157034782 ATGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTCATCTCTCTAA
1 ATGGCGAATCTTATCTCCATGTATTAGAAATGGAGCAGATTTTACCACTAACCTCATCTCTCTAA
*
157034847 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTTATCTTTCTGAGGTAGCAAGGAAGCAGACTGAAGA
66 GGTAGCAAGAGAGCAGGTTGAAGAATGAGTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* * * ** * *
157034912 TTGAAGATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAAATGGTGAATCTTATTTCTATG
131 TTGAAAATCTTATCTCCCTGAAGTAGTAGCGAAGCAGATCAAAAATGGCAAATCTTATCTCCATG
*
157034977 TATCGACGATGGAGAAGATTTTACCACTAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
196 TATCGACAATGGAGAAGATTTTACCACTAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTG-
*
157035042 AGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATTGAAGATCCTATCTCCCT
260 AGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATTGAAGATCCTATCTCCCG
157035107 AAGCAGTAGCGGAGCAGATCGAAG
325 AAGCAGTAGCGGAGCAGATCGAAG
* * * * *
157035131 ATGGCGAATCTTATTTCCATGTA-TCGAAAATTGAGCAGATTTTGGCCACTAACCTTATCTCTCT
1 ATGGCGAATCTTATCTCCATGTATTAG-AAATGGAGCAGATTTT-ACCACTAACCTCATCTCTCT
* * *
157035195 GAGGTAGCAAGAGAGTAGGTTGAAG-ATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGAC
64 AAGGTAGCAAGAGAGCAGGTTGAAGAATG--AG--TTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* * *
157035259 TGAAGATTGAAAATCTTATCTCCCT-AAGTAGTAGCGGAGCAGATCGGAAGA-GGCAAATCTTAT
125 TGAAGATTGAAAATCTTATCTCCCTGAAGTAGTAGCGAAGCAGATC-AAAAATGGCAAATCTTAT
* * * *
157035322 CTCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCTTTATCTCTCTGAGGTAGCAAGAGAG
189 CTCCATGTATCGACAATGGAGAAGATTTTA-CCACTAGCCTCATCTCTCTGAGGTAGCAAGAGAG
* *
157035387 CAGGTTG-GCAATTGGAGTCTTAT-TTTCTTGAGGTAGCAA-AGAAGCAAACTGAAGATTGAAGA
253 CAGGTTGAG-AA-T-GAGTCTTATCTTTC-TAAGGTAGCAAGA-AAGCAAACTAAAGATTGAAGA
* * * * * *
157035449 T-CTATTTCCCGAAGCAGTTGTGGAGTAGATTGAGG
313 TCCTATCTCCCGAAGCAGTAGCGGAGCAGATCGAAG
**
157035484 ATGGC-AGATCTTATCTCCATGTATTAGTGATGGAGCAGATTT
1 ATGGCGA-ATCTTATCTCCATGTATTAGAAATGGAGCAGATTT
157035526 GAGCCACCGG
Statistics
Matches: 338, Mismatches: 42, Indels: 26
0.83 0.10 0.06
Matches are distributed among these distances:
348 1 0.00
349 38 0.11
350 40 0.12
351 3 0.01
352 55 0.16
353 159 0.47
354 42 0.12
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (348 bp):
ATGGCGAATCTTATCTCCATGTATTAGAAATGGAGCAGATTTTACCACTAACCTCATCTCTCTAA
GGTAGCAAGAGAGCAGGTTGAAGAATGAGTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
TTGAAAATCTTATCTCCCTGAAGTAGTAGCGAAGCAGATCAAAAATGGCAAATCTTATCTCCATG
TATCGACAATGGAGAAGATTTTACCACTAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
GAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAAACTAAAGATTGAAGATCCTATCTCCCGA
AGCAGTAGCGGAGCAGATCGAAG
Found at i:157040077 original size:40 final size:40
Alignment explanation
Indices: 157040003--157040144 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
157039993 AACCCAAGTA
* *
157040003 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
157040042 CCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
157040082 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
157040122 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
157040145 CATTCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:157046391 original size:71 final size:71
Alignment explanation
Indices: 157046307--157046470 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157046297 CGATTTGTCT
157046307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157046372 CTTTCA
66 CTTTCA
157046378 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157046443 CTTTCA
66 CTTTCA
157046449 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157046471 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157046508 original size:71 final size:70
Alignment explanation
Indices: 157046307--157046504 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
157046297 CGATTTGTCT
* * * *
157046307 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157046372 CTTTCA
65 CTTTCA
* * * *
157046378 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157046443 CTTTCA
65 CTTTCA
* *
157046449 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
157046505 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157056163 original size:40 final size:39
Alignment explanation
Indices: 157055998--157056181 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
157055988 AAATTGAATG
* * *
157055998 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
157056038 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
157056078 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
157056118 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
157056157 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
157056182 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:157056206 original size:80 final size:81
Alignment explanation
Indices: 157056038--157056226 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
157056028 GCTGGAAATT
* * * *
157056038 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
157056103 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
157056119 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
157056182 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
157056198 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
157056227 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:157064278 original size:40 final size:39
Alignment explanation
Indices: 157064113--157064296 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
157064103 AAATTGAATG
* * *
157064113 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
157064153 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
157064193 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
157064233 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
157064272 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
157064297 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:157064321 original size:80 final size:81
Alignment explanation
Indices: 157064153--157064341 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
157064143 GCTGGAAATT
* * * *
157064153 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
157064218 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
157064234 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
157064297 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
157064313 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
157064342 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:157076723 original size:40 final size:40
Alignment explanation
Indices: 157076678--157076860 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
157076668 CTCGCACAAG
* *
157076678 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
157076718 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
157076758 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
157076798 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
157076838 GCCTTC-GGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
157076861 CATTCGAATA
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 15 0.12
40 110 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:157084819 original size:40 final size:40
Alignment explanation
Indices: 157084774--157084957 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
157084764 CTCGCACAAG
* *
157084774 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
157084814 GCCTTCGGGACTTAGCCCGAATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
157084854 GCCTTCGGGTCTTAGCTCGGATATA-ACAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
157084894 GCCTTCGGATCTTAGTCCAGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
157084934 GCCTTCGAGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
157084958 CATTCGAATA
Statistics
Matches: 118, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 116 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:157093846 original size:27 final size:28
Alignment explanation
Indices: 157093816--157093885 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
157093806 ATAATAAGTC
*
157093816 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
157093843 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
157093871 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
157093886 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:157103155 original size:68 final size:70
Alignment explanation
Indices: 157103083--157103280 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
157103073 ACACCCTGTA
* * * *
157103083 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
157103145 ATAAAT
65 ATAAAT
*
157103151 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
157103216 ATAAAT
65 ATAAAT
*
157103222 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
157103281 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:157103194 original size:41 final size:41
Alignment explanation
Indices: 157103149--157103266 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
157103139 TGAAAGATAA
157103149 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
157103190 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157103220 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157103261 ATGTAG
1 ATGTAG
157103267 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:157103206 original size:71 final size:71
Alignment explanation
Indices: 157103117--157103280 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157103107 GAGATGTATC
157103117 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
157103182 AGGACA
66 AGGACA
157103188 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
157103253 AGGACA
66 AGGACA
157103259 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
157103281 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:157110714 original size:68 final size:70
Alignment explanation
Indices: 157110642--157110839 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
157110632 ACACCCTGTA
* * * *
157110642 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
157110704 ATAAAT
65 ATAAAT
*
157110710 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
157110775 ATAAAT
65 ATAAAT
*
157110781 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
157110840 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:157110753 original size:41 final size:41
Alignment explanation
Indices: 157110708--157110825 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
157110698 TGAAAGATAA
157110708 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
157110749 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157110779 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157110820 ATGTAG
1 ATGTAG
157110826 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:157110765 original size:71 final size:71
Alignment explanation
Indices: 157110676--157110839 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157110666 GAGATGTATC
157110676 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
157110741 AGGACA
66 AGGACA
157110747 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
157110812 AGGACA
66 AGGACA
157110818 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
157110840 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:157121386 original size:43 final size:43
Alignment explanation
Indices: 157121338--157121492 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
157121328 CTGGCATTAC
*
157121338 GCCTGCTAGGCACGAAGGCCCGAATACAAATCACTGGCA-TGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACAAATCACCGGCACT-AA
*
157121381 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACAAATCACCGGCACTAA
*
157121424 GCCTGCTAGGCACGAAGGCCCGAATACAAATCACCGACACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACAAATCACCGGCACTAA
157121467 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
157121493 TAATACCAGT
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
43 106 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACAAATCACCGGCACTAA
Found at i:157121533 original size:38 final size:38
Alignment explanation
Indices: 157121485--157121568 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
157121475 GGCACGAAGG
* * * *
157121485 CCCGAATATAATACCAGTACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
157121523 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
157121561 CCCGAATA
1 CCCGAATA
157121569 CACATCAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:157125403 original size:31 final size:31
Alignment explanation
Indices: 157125365--157125468 Score: 115
Period size: 31 Copynumber: 3.5 Consensus size: 31
157125355 GACAAGATTG
* *
157125365 GCACTAAGTGTGCGGGTTTAAAATTTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTTATACA
*
157125396 GCACTAAGTGTGCGAGTTT--GA-TTATACA
1 GCACTAAGTGTGCGAGTTTAAAATTTATACA
* * * * *
157125424 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAGTTTAAAATTTATACA
157125455 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
157125469 GACTCAATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
28 23 0.37
29 1 0.02
30 1 0.02
31 37 0.60
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (31 bp):
GCACTAAGTGTGCGAGTTTAAAATTTATACA
Found at i:157125478 original size:31 final size:31
Alignment explanation
Indices: 157125365--157125480 Score: 98
Period size: 31 Copynumber: 3.8 Consensus size: 31
157125355 GACAAGATTG
* * * * * *
157125365 GCACTAAGTGTGCGGGTTTAAAATTTGTACA
1 GCACTAAGTGTGCGAGCTCAATATATATACA
*
157125396 GCACTAAGTGTGCGAG-T--TTGAT-TATACA
1 GCACTAAGTGTGCGAGCTCAAT-ATATATACA
* *
157125424 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAGCTCAATATATATACA
157125455 GCACTAAGTGTGCG-GACTCAATATAT
1 GCACTAAGTGTGCGAG-CTCAATATAT
157125481 GCTTTTGCAT
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
28 21 0.29
29 3 0.04
30 4 0.06
31 44 0.61
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (31 bp):
GCACTAAGTGTGCGAGCTCAATATATATACA
Found at i:157132833 original size:2 final size:2
Alignment explanation
Indices: 157132823--157132852 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
157132813 GTTATGTGTG
*
157132823 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
157132853 CATGAGTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:157133333 original size:28 final size:29
Alignment explanation
Indices: 157133301--157133373 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 29
157133291 GACAAGATTG
*
157133301 GCACTAAGTGTGCGAGTTTG-AT-TATATA
1 GCACTAAGTGTGCGAG-CTGAATATATATA
157133329 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAGCTG-A-ATATATATA
157133360 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
157133374 GACTCAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 2 0.05
28 16 0.40
30 2 0.05
31 20 0.50
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAATATATATA
Found at i:157133383 original size:31 final size:31
Alignment explanation
Indices: 157133323--157133385 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
157133313 CGAGTTTGAT
*
157133323 TATATAGCACTAAGTGTGCGAGCTGAATATA
1 TATATAGCACTAAGTGTGCGAGCTCAATATA
157133354 TATATAGCACTAAGTGTGCG-GACTCAATATA
1 TATATAGCACTAAGTGTGCGAG-CTCAATATA
157133385 T
1 T
157133386 GCTTTTGCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (31 bp):
TATATAGCACTAAGTGTGCGAGCTCAATATA
Found at i:157137570 original size:45 final size:45
Alignment explanation
Indices: 157137469--157137595 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
157137459 TTTTCTCAAA
* * *
157137469 TCACAGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
*
157137511 TCACCGGTATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
157137555 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
157137596 ATCAAGTCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 9 0.13
43 14 0.20
44 8 0.11
45 39 0.55
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:157139358 original size:66 final size:68
Alignment explanation
Indices: 157139282--157139468 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
157139272 TAGTACCACT
*
157139282 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
157139344 CACG
65 CACG
157139348 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
157139413 ATCACG
63 ATCACG
157139419 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
157139469 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:157139393 original size:71 final size:71
Alignment explanation
Indices: 157139305--157139468 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157139295 CGATTTGTCT
157139305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157139370 CTTTCA
66 CTTTCA
157139376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157139441 CTTTCA
66 CTTTCA
157139447 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157139469 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157139506 original size:71 final size:70
Alignment explanation
Indices: 157139305--157139502 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
157139295 CGATTTGTCT
* * *
157139305 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157139370 CTTTCA
65 CTTTCA
* * *
157139376 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157139441 CTTTCA
65 CTTTCA
* *
157139447 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
157139503 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157146923 original size:66 final size:68
Alignment explanation
Indices: 157146847--157147033 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
157146837 TAGTACCACT
*
157146847 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
157146909 CACG
65 CACG
157146913 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
157146978 ATCACG
63 ATCACG
157146984 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
157147034 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:157146958 original size:71 final size:71
Alignment explanation
Indices: 157146870--157147033 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157146860 CGATTTGTCT
157146870 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157146935 CTTTCA
66 CTTTCA
157146941 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157147006 CTTTCA
66 CTTTCA
157147012 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157147034 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157147071 original size:71 final size:70
Alignment explanation
Indices: 157146870--157147067 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
157146860 CGATTTGTCT
* * *
157146870 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157146935 CTTTCA
65 CTTTCA
* * *
157146941 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157147006 CTTTCA
65 CTTTCA
* *
157147012 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
157147068 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157150706 original size:71 final size:71
Alignment explanation
Indices: 157150620--157150783 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157150610 CGATTTGTCT
157150620 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157150685 CTTTCA
66 CTTTCA
157150691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157150756 CTTTCA
66 CTTTCA
157150762 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157150784 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157150821 original size:71 final size:70
Alignment explanation
Indices: 157150620--157150817 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
157150610 CGATTTGTCT
* * * *
157150620 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157150685 CTTTCA
65 CTTTCA
* * * *
157150691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157150756 CTTTCA
65 CTTTCA
* *
157150762 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
157150818 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157157787 original size:71 final size:71
Alignment explanation
Indices: 157157701--157157864 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157157691 CGATTTGTCT
157157701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157157766 CTTTCA
66 CTTTCA
157157772 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157157837 CTTTCA
66 CTTTCA
157157843 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157157865 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157157902 original size:71 final size:70
Alignment explanation
Indices: 157157701--157157898 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
157157691 CGATTTGTCT
* * * *
157157701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157157766 CTTTCA
65 CTTTCA
* * * *
157157772 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157157837 CTTTCA
65 CTTTCA
* *
157157843 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
157157899 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157160004 original size:11 final size:11
Alignment explanation
Indices: 157159990--157160065 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
157159980 CAATATTGAT
157159990 ATGATATGCAC
1 ATGATATGCAC
*
157160001 ATGATATG--T
1 ATGATATGCAC
157160010 ATGATATGCAC
1 ATGATATGCAC
*
157160021 ATGATATGTAC
1 ATGATATGCAC
157160032 --GATATGCAC
1 ATGATATGCAC
*
157160041 ATGATATG--T
1 ATGATATGCAC
*
157160050 ATGGTATGCAC
1 ATGATATGCAC
157160061 ATGAT
1 ATGAT
157160066 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:157160014 original size:20 final size:20
Alignment explanation
Indices: 157159989--157160065 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
157159979 ACAATATTGA
157159989 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
157160009 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
157160029 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
157160049 TATGGTATGCACATGAT
1 TATGATATGCACATGAT
157160066 GTATTCATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:157160144 original size:26 final size:26
Alignment explanation
Indices: 157160115--157160185 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
157160105 GAGGAAGTGC
*
157160115 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
157160141 AAAATGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
157160167 AAAAGGGCTTATGCCCCAG
1 AAAAGGGCTTATGCCCCAG
157160186 CTATTAAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:157160450 original size:32 final size:32
Alignment explanation
Indices: 157160409--157160473 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
157160399 TGTTTACAGT
157160409 AAAGGCTTCGACCCAGTAATATGAAATATGAA
1 AAAGGCTTCGACCCAGTAATATGAAATATGAA
* ** *
157160441 AAAGGCTTCGGCCCAGTGTTATGCAATATGAA
1 AAAGGCTTCGACCCAGTAATATGAAATATGAA
157160473 A
1 A
157160474 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGAA
Found at i:157164043 original size:40 final size:40
Alignment explanation
Indices: 157163984--157164069 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
157163974 CGGAATACAA
* *
157163984 CCGGATATAACCACGTGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCCTCGAGTCTTAGC
* * *
157164024 CCGGATAGAACGACTTGCACGAATGCCTTCGAGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCCTCGAGTCTTAGC
157164064 CCGGAT
1 CCGGAT
157164070 GTAGTCACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (40 bp):
CCGGATAGAACCACGTGCACGAATGCCCTCGAGTCTTAGC
Found at i:157165410 original size:18 final size:18
Alignment explanation
Indices: 157165394--157165426 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
157165384 TCTTCCTTTC
157165394 TCTTT-TTTTT-TTTCTT
1 TCTTTGTTTTTGTTTCTT
157165410 TCTTTGTTTTTGTTTCT
1 TCTTTGTTTTTGTTTCT
157165427 CTCATGTACG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (18 bp):
TCTTTGTTTTTGTTTCTT
Found at i:157172645 original size:66 final size:68
Alignment explanation
Indices: 157172569--157172755 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
157172559 TAGTACCACT
*
157172569 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
157172631 CACG
65 CACG
157172635 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
157172700 ATCACG
63 ATCACG
157172706 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
157172756 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:157172680 original size:71 final size:71
Alignment explanation
Indices: 157172592--157172755 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
157172582 CGATTTGTCT
157172592 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157172657 CTTTCA
66 CTTTCA
157172663 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
157172728 CTTTCA
66 CTTTCA
157172734 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157172756 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:157172793 original size:71 final size:70
Alignment explanation
Indices: 157172592--157172789 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
157172582 CGATTTGTCT
* * *
157172592 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157172657 CTTTCA
65 CTTTCA
* * *
157172663 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
157172728 CTTTCA
65 CTTTCA
* *
157172734 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
157172790 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157174865 original size:40 final size:40
Alignment explanation
Indices: 157174716--157174882 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 40
157174706 GGAATACAAT
* ** * *
157174716 CGGATATAACCACGTGCACGAATGCCCTCGGGTCTTAGCC
1 CGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCC
* ** *
157174756 CGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
157174796 CGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCC
** * * *
157174836 CGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGCC
1 CGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCC
157174876 CGGATAT
1 CGGATAT
157174883 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:157176140 original size:23 final size:22
Alignment explanation
Indices: 157176113--157176156 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
157176103 GGATGAACAC
157176113 TTTTCTTCCTTTCTCTTTTTTTT
1 TTTTCTTCCTTTCT-TTTTTTTT
* *
157176136 TTTTCTTTCTTTGTTTTTTTT
1 TTTTCTTCCTTTCTTTTTTTT
157176157 CTCTCATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (22 bp):
TTTTCTTCCTTTCTTTTTTTTT
Found at i:157176146 original size:17 final size:17
Alignment explanation
Indices: 157176126--157176158 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
157176116 TCTTCCTTTC
*
157176126 TCTTTTTTTTTTTTCTT
1 TCTTTGTTTTTTTTCTT
157176143 TCTTTGTTTTTTTTCT
1 TCTTTGTTTTTTTTCT
157176159 CTCATGTACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (17 bp):
TCTTTGTTTTTTTTCTT
Found at i:157178493 original size:28 final size:29
Alignment explanation
Indices: 157178426--157178526 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
157178416 ATAGTGAATC
*
157178426 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
157178455 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
157178483 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
157178513 CGCACACTTAGTGC
1 CGCACACTTAGTGC
157178527 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:157187318 original size:40 final size:40
Alignment explanation
Indices: 157187212--157187395 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
157187202 TGCTGGAAAT
* * * * * **
157187212 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
157187252 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
157187292 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
157187330 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
157187371 CATAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
157187396 GATTGAACGA
Statistics
Matches: 114, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 84 0.74
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:157187381 original size:79 final size:81
Alignment explanation
Indices: 157187213--157187395 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 81
157187203 GCTGGAAATT
* * *
157187213 ATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
*
157187278 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
157187294 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
157187356 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
157187372 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
157187396 GATTGAACGA
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
78 2 0.02
79 54 0.65
80 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:157195282 original size:40 final size:38
Alignment explanation
Indices: 157195180--157195328 Score: 167
Period size: 40 Copynumber: 3.8 Consensus size: 38
157195170 AAATTGAATG
* * * *
157195180 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT-G-AGTT
* *
157195220 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT-G-AGTT
157195260 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGTT
* *
157195297 TTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
157195329 AATCGTGATA
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
37 30 0.32
38 3 0.03
39 3 0.03
40 59 0.62
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGTT
Found at i:157195311 original size:37 final size:38
Alignment explanation
Indices: 157195219--157195329 Score: 145
Period size: 37 Copynumber: 2.9 Consensus size: 38
157195209 TGCTGGAAAT
*
157195219 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTAGC
*
157195259 TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-G-AGT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTAGC
*
157195296 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
157195330 ATCGTGATAT
Statistics
Matches: 65, Mismatches: 3, Indels: 8
0.86 0.04 0.11
Matches are distributed among these distances:
37 31 0.48
38 3 0.05
39 3 0.05
40 28 0.43
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTAGC
Found at i:157198300 original size:40 final size:39
Alignment explanation
Indices: 157198135--157198318 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
157198125 AAATTGAATG
* * *
157198135 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
157198175 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
157198215 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
157198255 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
157198294 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
157198319 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:157198343 original size:80 final size:81
Alignment explanation
Indices: 157198175--157198363 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
157198165 GCTGGAAATT
* * * *
157198175 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
157198240 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
157198256 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
157198319 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
157198335 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
157198364 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:157206417 original size:40 final size:39
Alignment explanation
Indices: 157206252--157206435 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
157206242 AAATTGAATG
* * *
157206252 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
157206292 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
157206332 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
157206372 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
157206411 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
157206436 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:157206460 original size:80 final size:81
Alignment explanation
Indices: 157206292--157206480 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
157206282 GCTGGAAATT
* * * *
157206292 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
157206357 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
157206373 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
157206436 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
157206452 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
157206481 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:157210652 original size:40 final size:40
Alignment explanation
Indices: 157210593--157210734 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
157210583 AAATTGAATG
* * *
157210593 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
157210633 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
157210673 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
157210713 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
157210735 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:157210735 original size:40 final size:39
Alignment explanation
Indices: 157210632--157210760 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
157210622 TGCTGGAAAT
* * *
157210632 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
157210672 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
157210712 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
157210752 TATATCCGG
1 TATATCCGG
157210761 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:157219431 original size:37 final size:37
Alignment explanation
Indices: 157219381--157219464 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
157219371 TTATTAGGAA
157219381 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
157219418 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
157219455 GTCTCACCCG
1 GTCTTACCCG
157219465 AAACATATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:157219569 original size:48 final size:48
Alignment explanation
Indices: 157219511--157219662 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
157219501 TGTTACAACA
*
157219511 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
157219559 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
157219607 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
157219655 TTCACATT
1 TTCACATT
157219663 CATCACATCG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:157219711 original size:49 final size:49
Alignment explanation
Indices: 157219654--157219987 Score: 550
Period size: 49 Copynumber: 6.9 Consensus size: 49
157219644 CACACATATA
*
157219654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
157219703 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
157219752 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
157219799 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
157219848 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
157219895 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
157219944 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
157219988 CATCTCATAC
Statistics
Matches: 269, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 89 0.33
49 180 0.67
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:157219807 original size:145 final size:144
Alignment explanation
Indices: 157219654--157219987 Score: 553
Period size: 145 Copynumber: 2.3 Consensus size: 144
157219644 CACACATATA
*
157219654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
157219719 TCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
*
157219784 ATCACA-TATATACTC
129 ATCACAGTATATACAC
* *
157219799 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* * * *
157219864 TTGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
157219929 CACATGTATATACAC
131 CACA-GTATATACAC
*
157219944 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
157219988 CATCTCATAC
Statistics
Matches: 177, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
143 45 0.25
145 132 0.75
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (144 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACAGTATATACAC
Found at i:157219835 original size:96 final size:96
Alignment explanation
Indices: 157219654--157219988 Score: 580
Period size: 96 Copynumber: 3.5 Consensus size: 96
157219644 CACACATATA
* *
157219654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
* *
157219719 TCGGCCATTAGGCCTTATCACATATATATACAC
64 TTGGCCATTAGGCCTTATCACATGTATATACAC
*
157219752 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
157219817 GGCCATTAGGCCTTATCACATGTATATACAC
66 GGCCATTAGGCCTTATCACATGTATATACAC
*
157219848 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
157219913 GGCCATTAGGCCTTATCACATGTATATACAC
66 GGCCATTAGGCCTTATCACATGTATATACAC
* *
157219944 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
157219989 ATCTCATACA
Statistics
Matches: 229, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 193 0.84
98 36 0.16
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
GGCCATTAGGCCTTATCACATGTATATACAC
Found at i:157230086 original size:43 final size:43
Alignment explanation
Indices: 157230020--157230102 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
157230010 ATATCGTACA
* *
157230020 ATGCCAACGTCCCAGACATGGTCTTACAT-GTAATCACATAACG
1 ATGCCAACGTCCCAGACAAGGTCTTAC-TCGTAAACACATAACG
*
157230063 ATGCC-ACTGTCCTAGACAAGGTCTTACTCGTAAACACATA
1 ATGCCAAC-GTCCCAGACAAGGTCTTACTCGTAAACACATA
157230103 TCCGAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGTCTTACTCGTAAACACATAACG
Found at i:157230326 original size:14 final size:15
Alignment explanation
Indices: 157230286--157230324 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
157230276 TTCGGCTGTT
157230286 GCATATATAAATTTA
1 GCATATATAAATTTA
* *
157230301 -CATATTTCAATTTA
1 GCATATATAAATTTA
157230315 GCATATATAA
1 GCATATATAA
157230325 TTCACATTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (15 bp):
GCATATATAAATTTA
Done.