Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 508 of 770
Found at i:157231669 original size:27 final size:27
Alignment explanation
Indices: 157231463--157231668 Score: 222
Period size: 27 Copynumber: 7.6 Consensus size: 27
157231453 TTAGTTTACC
157231463 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
157231490 AAACTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
157231517 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*
157231544 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*
157231571 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
157231598 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
157231625 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
157231652 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
157231669 TTAATTTACA
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.03
27 153 0.96
28 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:157231683 original size:27 final size:27
Alignment explanation
Indices: 157231651--157231724 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
157231641 CTCGACTTGT
* *
157231651 AAAATTACCAAAGTACCCTTAATTTAC
1 AAAATTACCAAAATACCCTCAATTTAC
* **** *
157231678 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCAATTTAC
157231705 AAAATTACCAAAATACCCTC
1 AAAATTACCAAAATACCCTC
157231725 GTAGGGTAGA
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAATTTAC
Found at i:157231740 original size:27 final size:27
Alignment explanation
Indices: 157231707--157232144 Score: 601
Period size: 27 Copynumber: 16.3 Consensus size: 27
157231697 CGATTTACAA
*
157231707 AATTACCAAAATA-CCCTCGTAGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
157231734 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157231761 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
157231788 AATTACCGGAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
157231815 AAGTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157231842 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
157231869 AATTATCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
157231896 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
157231923 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157231950 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157231977 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157232004 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
157232031 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
157232058 AATTACCGAAACACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
157232085 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
157232112 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
157232138 AATTACC
1 AATTACC
157232145 ATTTTGCCCC
Statistics
Matches: 364, Mismatches: 46, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
26 17 0.05
27 343 0.94
28 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:157232602 original size:22 final size:22
Alignment explanation
Indices: 157232550--157232614 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
157232540 TTAAAGCCTT
* *
157232550 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
157232572 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
157232594 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
157232615 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:157232640 original size:27 final size:27
Alignment explanation
Indices: 157232602--157232666 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
157232592 ACCTGATTAT
*
157232602 GGCTGTGTGCCAAACGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
157232629 GGCTATGTGCCAAACGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
157232656 GGCTATGTGCC
1 GGCTATGTGCC
157232667 TAGGGCTATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (27 bp):
GGCTATGTGCCAAACGTATTTGCCTAA
Found at i:157232668 original size:14 final size:14
Alignment explanation
Indices: 157232622--157232680 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
157232612 CAAACGTATT
157232622 TGCCTAAGGCTATG
1 TGCCTAAGGCTATG
* * *
157232636 TGCCAAACG-TATT
1 TGCCTAAGGCTATG
157232649 TGCCTAAGGCTATG
1 TGCCTAAGGCTATG
*
157232663 TGCCTAGGGCTATG
1 TGCCTAAGGCTATG
157232677 TGCC
1 TGCC
157232681 AATATATGGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
13 10 0.27
14 27 0.73
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (14 bp):
TGCCTAAGGCTATG
Found at i:157234164 original size:28 final size:29
Alignment explanation
Indices: 157234066--157234164 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
157234056 TCACAAATTG
* *
157234066 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
157234095 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
157234123 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
157234151 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
157234165 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:157244692 original size:56 final size:55
Alignment explanation
Indices: 157244625--157244736 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 55
157244615 AAAAAAAAAG
* *
157244625 AGAAAAAAAAAAAATGTTCATTC-TTCTCCATAGGCTTGGCCGAATGTACTAAGGAA
1 AGAAAAAAAAAAAATGTTCATCCTTTCT-CATAGGCTTGGCCGAA-ATACTAAGGAA
* ** ***
157244681 AGAAAAGAAAAATTTGTTCATCCTTTCTCATCTTCTTGGCCGAAATACTAAGGAA
1 AGAAAAAAAAAAAATGTTCATCCTTTCTCATAGGCTTGGCCGAAATACTAAGGAA
157244736 A
1 A
157244737 AGGGGGAGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
55 11 0.23
56 32 0.68
57 4 0.09
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (55 bp):
AGAAAAAAAAAAAATGTTCATCCTTTCTCATAGGCTTGGCCGAAATACTAAGGAA
Found at i:157245095 original size:17 final size:18
Alignment explanation
Indices: 157245053--157245101 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
157245043 AGTTGAAAAG
157245053 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
157245072 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
157245089 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
157245102 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:157245982 original size:40 final size:40
Alignment explanation
Indices: 157245916--157246082 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
157245906 AAATTGAATG
* * *
157245916 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
157245955 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
157245995 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
157246035 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
157246075 ATATCCGG
1 ATATCCGG
157246083 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:157253079 original size:17 final size:18
Alignment explanation
Indices: 157253037--157253085 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
157253027 AGTTGAAAAG
157253037 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
157253056 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
157253073 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
157253086 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:157253968 original size:40 final size:40
Alignment explanation
Indices: 157253902--157254052 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
157253892 AAATTGAATG
* * *
157253902 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
157253941 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
157253981 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
157254021 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
157254053 ACTTGATTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:157254066 original size:40 final size:40
Alignment explanation
Indices: 157253938--157254068 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
157253928 TATGCTGGAA
* * * *
157253938 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
* * *
157253978 GTTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
157254018 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
157254058 ATTATATCCGG
1 ATTATATCCGG
157254069 TTATATTCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:157256049 original size:14 final size:14
Alignment explanation
Indices: 157255994--157256055 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
157255984 ATCCATTATT
*
157255994 TTTTATTGTCATATA
1 TTTTATT-TTATATA
* *
157256009 TTTTACTTATAAATTA
1 TTTTA-TTTTATA-TA
* *
157256025 TATTATATTATATA
1 TTTTATTTTATATA
157256039 TTTTATTTTATATA
1 TTTTATTTTATATA
157256053 TTT
1 TTT
157256056 CTTATATATT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
14 17 0.47
15 11 0.31
16 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:157256085 original size:20 final size:21
Alignment explanation
Indices: 157256062--157256101 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
157256052 ATTTCTTATA
*
157256062 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
157256082 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
157256102 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:157256572 original size:21 final size:22
Alignment explanation
Indices: 157256548--157256608 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
157256538 GCAAAATACT
157256548 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
157256569 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
157256591 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
157256609 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:157260630 original size:28 final size:28
Alignment explanation
Indices: 157260591--157260659 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
157260581 TTTAAAACCC
157260591 TAGGGGT-ATTTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
157260618 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
157260646 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
157260660 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:157262489 original size:19 final size:18
Alignment explanation
Indices: 157262452--157262495 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
157262442 ATACATACAG
157262452 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
157262469 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
157262488 TACTAATT
1 TAATAATT
157262496 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:157264917 original size:28 final size:28
Alignment explanation
Indices: 157264875--157264943 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
157264865 TTTAAAACCC
*
157264875 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
157264902 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
157264930 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
157264944 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:157266770 original size:19 final size:18
Alignment explanation
Indices: 157266733--157266776 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
157266723 ATACATACAG
157266733 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
157266750 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
157266769 TACTAATT
1 TAATAATT
157266777 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:157269181 original size:28 final size:28
Alignment explanation
Indices: 157269137--157269204 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
157269127 TTTAAAACCC
157269137 TAGGGGT-A-TTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
157269163 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
157269191 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
157269205 TGATCTACGC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 7 0.18
27 1 0.03
28 31 0.79
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:157271014 original size:19 final size:18
Alignment explanation
Indices: 157270977--157271020 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
157270967 ATACATACAG
157270977 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
157270994 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
157271013 TACTAATT
1 TAATAATT
157271021 AAAATTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:157273301 original size:28 final size:28
Alignment explanation
Indices: 157273262--157273330 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
157273252 TTTAAAACCC
157273262 TAGGGGT-ATTTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
157273289 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
157273317 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
157273331 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:157275143 original size:23 final size:21
Alignment explanation
Indices: 157275089--157275149 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
157275079 ATAATATTTT
157275089 TTTTTTCAA-AATAATAAGTAA
1 TTTTTTCAATAATAATAA-TAA
157275110 TTTTTTC--TAATAATAATAA
1 TTTTTTCAATAATAATAATAA
*
157275129 TTTTATCTCAATAATACTAAT
1 TTTT-T-TCAATAATAATAAT
157275150 TAAAATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 7 0.21
20 9 0.26
21 9 0.26
23 9 0.26
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTTTCAATAATAATAATAA
Found at i:157275199 original size:75 final size:73
Alignment explanation
Indices: 157275091--157275243 Score: 238
Period size: 75 Copynumber: 2.0 Consensus size: 73
157275081 AATATTTTTT
157275091 TTTTCAAAATAATAAGTAATTTTTTC-TAATAATAATAATTTTATCTCAATAATACTAATTAAAA
1 TTTTCAAAATAATAAGTAATTTTTTCATAATAATAAT--TTTTATCTC-ATAATACTAATTAAAA
157275155 TTTCATAAAAA
63 TTTCATAAAAA
157275166 TTTTCAAAATACATACAGTAATATTTTTC-TAATAATAATTTTTATCTCATAATACTAATTAAAA
1 TTTTCAAAATA-ATA-AGTAAT-TTTTTCATAATAATAATTTTTATCTCATAATACTAATTAAAA
157275230 TTTCATAAAAA
63 TTTCATAAAAA
157275241 TTT
1 TTT
157275244 AAAATATCCG
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
75 41 0.55
76 12 0.16
77 6 0.08
78 16 0.21
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.44
Consensus pattern (73 bp):
TTTTCAAAATAATAAGTAATTTTTTCATAATAATAATTTTTATCTCATAATACTAATTAAAATTT
CATAAAAA
Found at i:157286802 original size:206 final size:205
Alignment explanation
Indices: 157286448--157286995 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 205
157286438 AGCTGAAACA
* *
157286448 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
* * * *
157286513 TTTCACGTGCTTACGATGAGGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
*
157286578 TCGAAGTTTGGCGTCTCCATATTTGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
157286643 TAGACTGAAGC
195 TAGACTGAAGC
*
157286654 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTGATTTAGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-CATAGCTGATTTGGC
* *
157286719 TTTCACGTGCTTACGCTGAAACAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
157286784 TCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACTTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
157286849 TAGATTGAAGC
195 TAGACTGAAGC
* * * * *
157286860 AGATCAAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
*
157286925 TTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
157286990 TCGAAG
130 TCGAAG
157286996 AAGCAGATTT
Statistics
Matches: 318, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 316 0.99
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (205 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACATAGCTGATTTGGCT
TTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGATT
AGACTGAAGC
Found at i:157288683 original size:14 final size:14
Alignment explanation
Indices: 157288628--157288690 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
157288618 ATCCATTATT
*
157288628 TTTTATTGTCATATA
1 TTTTATT-TTATATA
* *
157288643 TTTTACTTATAAATTA
1 TTTTA-TTTTATA-TA
* *
157288659 TATTATATTATATA
1 TTTTATTTTATATA
157288673 TTTTATTTTATATA
1 TTTTATTTTATATA
157288687 TTTT
1 TTTT
157288691 TTATAAAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
14 18 0.49
15 11 0.30
16 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:157289104 original size:20 final size:21
Alignment explanation
Indices: 157289079--157289120 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
157289069 CCTTATAATA
157289079 TCTATCTTTCT-ATATATATT
1 TCTATCTTTCTCATATATATT
157289099 TCTATCTTTCTCATATATATT
1 TCTATCTTTCTCATATATATT
157289120 T
1 T
157289121 TTATTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.60
Consensus pattern (21 bp):
TCTATCTTTCTCATATATATT
Found at i:157289207 original size:21 final size:22
Alignment explanation
Indices: 157289183--157289243 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
157289173 GCAAAATACT
157289183 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
157289204 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
157289226 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
157289244 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:157298506 original size:29 final size:27
Alignment explanation
Indices: 157298472--157298574 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
157298462 TACTCAATCA
*
157298472 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
157298501 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
157298530 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
157298559 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157298575 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:157309146 original size:29 final size:28
Alignment explanation
Indices: 157309112--157309214 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
157309102 TACTCAATCA
*
157309112 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
157309141 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
157309170 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
157309199 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157309215 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:157319790 original size:29 final size:28
Alignment explanation
Indices: 157319756--157319858 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
157319746 TACTCAATCA
*
157319756 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
157319785 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
157319814 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
157319843 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157319859 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:157327805 original size:29 final size:28
Alignment explanation
Indices: 157327771--157327873 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
157327761 TACTCAATCA
*
157327771 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
157327800 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
157327829 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
157327858 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
157327874 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:157330407 original size:49 final size:49
Alignment explanation
Indices: 157330288--157330563 Score: 461
Period size: 49 Copynumber: 5.7 Consensus size: 49
157330278 GTAGGAGATG
*
157330288 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
157330335 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
157330384 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
157330433 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
157330480 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
157330529 TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATG
157330564 TGTGACAGCC
Statistics
Matches: 213, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 87 0.41
49 126 0.59
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:157330484 original size:96 final size:95
Alignment explanation
Indices: 157330287--157330563 Score: 457
Period size: 96 Copynumber: 2.9 Consensus size: 95
157330277 TGTAGGAGAT
*
157330287 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGG
* * *
157330351 CCTAATGGCCGATGTGATGAATGTGAAGGT
66 CCTAATGGCCAATGTGATGAATGTGAAAGA
157330381 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATA
157330446 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
63 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
157330479 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAG
157330544 GCCTAATGGCCAATGTGATG
65 GCCTAATGGCCAATGTGATG
157330564 TGTGACAGCC
Statistics
Matches: 172, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
94 1 0.01
96 132 0.77
98 39 0.23
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (95 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAATGTGATAAGG
CCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:157330556 original size:145 final size:145
Alignment explanation
Indices: 157330288--157330563 Score: 543
Period size: 145 Copynumber: 1.9 Consensus size: 145
157330278 GTAGGAGATG
*
157330288 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
157330353 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
157330418 GAATGTGAAAGTGTA
131 GAATGTGAAAGTGTA
157330433 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
157330498 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
157330563 G
131 G
157330564 TGTGACAGCC
Statistics
Matches: 130, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 130 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (145 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
GAATGTGAAAGTGTA
Found at i:157332331 original size:59 final size:60
Alignment explanation
Indices: 157332235--157332367 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
157332225 GACAAGATTG
* * *
157332235 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
157332295 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
157332354 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
157332368 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:157332380 original size:29 final size:29
Alignment explanation
Indices: 157332265--157332367 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
157332255 AAAATTGTAC
*
157332265 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
157332294 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
157332324 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
157332353 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
157332368 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:157343599 original size:40 final size:40
Alignment explanation
Indices: 157343540--157343681 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
157343530 AAATTGAATA
* * *
157343540 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
157343580 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
157343620 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
157343660 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
157343682 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:157343682 original size:40 final size:39
Alignment explanation
Indices: 157343579--157343707 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
157343569 TGCTGGAAAT
* * *
157343579 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
157343619 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
157343659 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
157343699 TATATCCGG
1 TATATCCGG
157343708 TTATATTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:157346122 original size:71 final size:71
Alignment explanation
Indices: 157346034--157346239 Score: 403
Period size: 71 Copynumber: 2.9 Consensus size: 71
157346024 TTAAATGAGC
157346034 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGT
1 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGT
157346099 GAAAGA
66 GAAAGA
*
157346105 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACAT
1 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGT
157346170 GAAAGA
66 GAAAGA
157346176 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
157346240 AGACAAATCG
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 133 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (71 bp):
TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGT
GAAAGA
Found at i:157346153 original size:41 final size:41
Alignment explanation
Indices: 157346108--157346225 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
157346098 TGAAAGATAA
157346108 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
157346149 ATGTAGAC-AAG-AG-A-GC-T-A---C-A-TGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157346179 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
157346220 ATGTAG
1 ATGTAG
157346226 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 8 0.15
32 2 0.04
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 2 0.04
40 8 0.15
41 14 0.26
42 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:157347892 original size:28 final size:29
Alignment explanation
Indices: 157347851--157347905 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
157347841 CATGACTGTA
*
157347851 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGATTCGGGCCTAATGGGCCATATG
*
157347879 AATGTGATTCGGGCCTAGTGGGCCATA
1 AATGTGATTCGGGCCTAATGGGCCATA
157347906 AGCATGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (29 bp):
AATGTGATTCGGGCCTAATGGGCCATATG
Found at i:157347912 original size:29 final size:28
Alignment explanation
Indices: 157347851--157347912 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
157347841 CATGACTGTA
* *
157347851 AATGTGATTTGGGCCTAATGGCCATATG
1 AATGTGATTCGGGCCTAATGGCCATAAG
*
157347879 AATGTGATTCGGGCCTAGTGGGCCATAAG
1 AATGTGATTCGGGCCTAAT-GGCCATAAG
*
157347908 CATGT
1 AATGT
157347913 ATGTGGACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (28 bp):
AATGTGATTCGGGCCTAATGGCCATAAG
Found at i:157356029 original size:50 final size:50
Alignment explanation
Indices: 157355971--157356072 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
157355961 CTTTTCACCA
157355971 TTAATTCATCCAAGGACAGTTGACATTTAACAAGTAAAAGAAAATGGAAC
1 TTAATTCATCCAAGGACAGTTGACATTTAACAAGTAAAAGAAAATGGAAC
* *
157356021 TTAATTCATCCAAGGACAGTTGACATTTAAGAAGTAACAGAAAATGGAAC
1 TTAATTCATCCAAGGACAGTTGACATTTAACAAGTAAAAGAAAATGGAAC
157356071 TT
1 TT
157356073 TACTTTACTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (50 bp):
TTAATTCATCCAAGGACAGTTGACATTTAACAAGTAAAAGAAAATGGAAC
Found at i:157356846 original size:22 final size:23
Alignment explanation
Indices: 157356821--157356871 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 23
157356811 CAGACATGAT
157356821 AATTTGCAGC-ACATAACATC-TA
1 AATTTGCAGCTAC-TAACATCATA
*
157356843 AATTTTCAGCTTACTAACATCATA
1 AATTTGCAGC-TACTAACATCATA
157356867 AATTT
1 AATTT
157356872 ACATCCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 9 0.36
23 7 0.28
24 9 0.36
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (23 bp):
AATTTGCAGCTACTAACATCATA
Found at i:157361052 original size:11 final size:11
Alignment explanation
Indices: 157361036--157361060 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
157361026 TTCCATAGAC
157361036 AATAAAATAAT
1 AATAAAATAAT
157361047 AATAAAATAAT
1 AATAAAATAAT
157361058 AAT
1 AAT
157361061 TTACTCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:157361748 original size:45 final size:45
Alignment explanation
Indices: 157361699--157361953 Score: 280
Period size: 45 Copynumber: 5.7 Consensus size: 45
157361689 ATCAGAAATA
* * * *
157361699 AGTAAGACCATAGTTGAAAGACGTTATGGCATAATGATTATAATG
1 AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTAACG
* * **
157361744 AGTAAGACCATAGCTAAAAGACGTTAGGGCATCACAATTCTAACG
1 AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTAACG
* *
157361789 AGTAATACCATAGCTGAAAGACGTTATGGCATCATGATTGTAACG
1 AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTAACG
* ** *
157361834 AGTAAGACCATAGCTAAAAGACGTTATGGCATCACAATTCTAACA
1 AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTAACG
* * * *
157361879 AGTAAGACCATA-ATGAAAGATGCTATGGCATCATGAGTC-AGACG
1 AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTA-ACG
* * * **
157361923 AATAAGACCATGGTTGAAAGACACTATGGCA
1 AGTAAGACCATAGCTGAAAGACGTTATGGCA
157361954 ACACGACGTA
Statistics
Matches: 175, Mismatches: 33, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
43 1 0.01
44 32 0.18
45 142 0.81
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAGACGTTATGGCATCATGATTCTAACG
Found at i:157361793 original size:90 final size:90
Alignment explanation
Indices: 157361698--157361914 Score: 337
Period size: 90 Copynumber: 2.4 Consensus size: 90
157361688 TATCAGAAAT
* * *
157361698 AAGTAAGACCATAGTTGAAAGACGTTATGGCATAATGATTATAATGAGTAAGACCATAGCTAAAA
1 AAGTAAGACCATAGATGAAAGACGTTATGGCATCATGATTATAACGAGTAAGACCATAGCTAAAA
157361763 GACGTTAGGGCATCACAATTCTAAC
66 GACGTTAGGGCATCACAATTCTAAC
* * * *
157361788 GAGTAATACCATAGCTGAAAGACGTTATGGCATCATGATTGTAACGAGTAAGACCATAGCTAAAA
1 AAGTAAGACCATAGATGAAAGACGTTATGGCATCATGATTATAACGAGTAAGACCATAGCTAAAA
*
157361853 GACGTTATGGCATCACAATTCTAAC
66 GACGTTAGGGCATCACAATTCTAAC
* *
157361878 AAGTAAGACCATA-ATGAAAGATGCTATGGCATCATGA
1 AAGTAAGACCATAGATGAAAGACGTTATGGCATCATGA
157361915 GTCAGACGAA
Statistics
Matches: 115, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 21 0.18
90 94 0.82
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (90 bp):
AAGTAAGACCATAGATGAAAGACGTTATGGCATCATGATTATAACGAGTAAGACCATAGCTAAAA
GACGTTAGGGCATCACAATTCTAAC
Found at i:157362180 original size:19 final size:19
Alignment explanation
Indices: 157362156--157362220 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 19
157362146 ATGTTAATGC
157362156 CATATGTGATTATATGTTT
1 CATATGTGATTATATGTTT
* *
157362175 CATATGTTTATAAATATGTTT
1 CATATG-TGAT-TATATGTTT
*
157362196 GCCTTATGTGATTATATGTTT
1 --CATATGTGATTATATGTTT
157362217 CATA
1 CATA
157362221 GGTCTATAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 9 0.25
20 3 0.08
21 16 0.44
22 3 0.08
23 5 0.14
ACGTcount: A:0.28, C:0.08, G:0.14, T:0.51
Consensus pattern (19 bp):
CATATGTGATTATATGTTT
Found at i:157362193 original size:21 final size:21
Alignment explanation
Indices: 157362167--157362236 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
157362157 ATATGTGATT
157362167 ATATGTTTCATATGTTTATAA
1 ATATGTTTCATATGTTTATAA
* * *
157362188 ATATGTTTGCCTTATG-TGAT-T
1 ATATGTTT--CATATGTTTATAA
* *
157362209 ATATGTTTCATAGGTCTATAA
1 ATATGTTTCATATGTTTATAA
157362230 ATATGTT
1 ATATGTT
157362237 AACTCCTGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
19 4 0.11
20 2 0.05
21 23 0.62
22 3 0.08
23 5 0.14
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (21 bp):
ATATGTTTCATATGTTTATAA
Found at i:157362207 original size:42 final size:42
Alignment explanation
Indices: 157362153--157362236 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
157362143 TGAATGTTAA
* *
157362153 TGCCATATGTGATTATATGTTTCATATGTTTATAAATATGTT
1 TGCCATATGTGATTATATGTTTCATAGGTCTATAAATATGTT
*
157362195 TGCCTTATGTGATTATATGTTTCATAGGTCTATAAATATGTT
1 TGCCATATGTGATTATATGTTTCATAGGTCTATAAATATGTT
157362237 AACTCCTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.08, G:0.15, T:0.49
Consensus pattern (42 bp):
TGCCATATGTGATTATATGTTTCATAGGTCTATAAATATGTT
Found at i:157365055 original size:25 final size:25
Alignment explanation
Indices: 157365027--157365077 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
157365017 TCAAATAATC
157365027 ATTTGTATCATTCAATCACAATCCA
1 ATTTGTATCATTCAATCACAATCCA
157365052 ATTTGTATCATTCAATCACAATCCA
1 ATTTGTATCATTCAATCACAATCCA
157365077 A
1 A
157365078 CTCATCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (25 bp):
ATTTGTATCATTCAATCACAATCCA
Found at i:157384246 original size:40 final size:40
Alignment explanation
Indices: 157384176--157384415 Score: 337
Period size: 40 Copynumber: 6.0 Consensus size: 40
157384166 GGATTTAACT
* *
157384176 GGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
157384215 GGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
157384255 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
157384295 GGATGTAATAACTCGCACAAATGCCTTCAGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
157384335 GGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
157384375 GGA-ACTAGTCACTAGCGCA-AAATGCC-TCGGGACTTAGCCC
1 GGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGCCC
157384415 G
1 G
157384416 TTATCATCCA
Statistics
Matches: 186, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 159 0.85
41 7 0.04
42 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:157391834 original size:40 final size:40
Alignment explanation
Indices: 157391789--157391878 Score: 121
Period size: 40 Copynumber: 2.2 Consensus size: 40
157391779 CGGAATACAA
*
157391789 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
* *
157391829 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
157391869 CCGGATATAA
1 CCGGATATAA
157391879 TTTCCAGCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:157391893 original size:40 final size:40
Alignment explanation
Indices: 157391789--157391912 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
157391779 CGGAATACAA
**
157391789 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
157391829 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
157391869 CCGGATATAATTTCCAGCATAATTGTCTTCAGGG-CTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTC-GGGTCTTAGC
157391909 CCGG
1 CCGG
157391913 GTATCATTCA
Statistics
Matches: 68, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.03
40 63 0.93
41 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:157393865 original size:40 final size:40
Alignment explanation
Indices: 157393798--157393968 Score: 256
Period size: 40 Copynumber: 4.3 Consensus size: 40
157393788 CATTTGAATG
157393798 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
157393837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
157393877 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
157393917 ATGTCTGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
157393957 ATATCC-GGCTAA
1 ATATCCGGGCTAA
157393969 ATCTCGAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 19 0.16
40 100 0.84
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:157396137 original size:21 final size:21
Alignment explanation
Indices: 157396111--157396163 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
157396101 GGGTGTGGGG
*
157396111 CACGGGAGTGTTACCCTCCCA
1 CACGGGCGTGTTACCCTCCCA
*
157396132 CACGGGCGTGTTACCCTTCCA
1 CACGGGCGTGTTACCCTCCCA
157396153 CACGGGCGTGT
1 CACGGGCGTGT
157396164 GCCTTGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.21
Consensus pattern (21 bp):
CACGGGCGTGTTACCCTCCCA
Found at i:157397277 original size:27 final size:27
Alignment explanation
Indices: 157397239--157397293 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
157397229 CATCCGAGTG
*
157397239 TTTGTTTCCATTTTAGAGCTACGGGAA
1 TTTGTTGCCATTTTAGAGCTACGGGAA
*
157397266 TTTGTTGCCATTTTAGAGCTATGGGAA
1 TTTGTTGCCATTTTAGAGCTACGGGAA
157397293 T
1 T
157397294 ATGTAGCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.42
Consensus pattern (27 bp):
TTTGTTGCCATTTTAGAGCTACGGGAA
Found at i:157401362 original size:29 final size:29
Alignment explanation
Indices: 157401330--157401464 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
157401320 ATACCCTCCG
** * *
157401330 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
157401359 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157401388 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
157401417 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157401446 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
157401465 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:157401397 original size:58 final size:58
Alignment explanation
Indices: 157401276--157401465 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
157401266 TACTCGATTT
* * * *** *
157401276 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
157401334 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
157401392 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
157401450 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
157401466 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:157401594 original size:2 final size:2
Alignment explanation
Indices: 157401587--157401621 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
157401577 CATTTTAATT
157401587 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
157401622 CATCCCATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:157406397 original size:40 final size:40
Alignment explanation
Indices: 157406343--157406496 Score: 240
Period size: 40 Copynumber: 3.9 Consensus size: 40
157406333 GATATAGCTT
*
157406343 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
157406383 CTCGCACAATTGCCTTCGGGACTT-GTCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAA
* *
157406423 CTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
157406463 CTCTCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
157406497 CAATCCGAAT
Statistics
Matches: 104, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.12
40 90 0.87
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:157407709 original size:9 final size:10
Alignment explanation
Indices: 157407684--157407717 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
157407674 TCCTCAAAGC
157407684 TCTTTTTCCT
1 TCTTTTTCCT
157407694 TCTTTTTCCT
1 TCTTTTTCCT
*
157407704 TCTTTTTCTT
1 TCTTTTTCCT
157407714 TCTT
1 TCTT
157407718 CTATTCGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
TCTTTTTCCT
Found at i:157414200 original size:40 final size:40
Alignment explanation
Indices: 157414144--157414337 Score: 293
Period size: 40 Copynumber: 4.9 Consensus size: 40
157414134 GATATAGCTT
*
157414144 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
157414184 CTCGCACAATTACCTTCGGGACTTACCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
157414224 CTCACACAATTGCCTTCGGGACTT-GTCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAA
*
157414264 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
157414304 CTCTCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
157414338 CAATCCGAAT
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.09
40 126 0.90
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:157416896 original size:46 final size:46
Alignment explanation
Indices: 157416812--157417123 Score: 204
Period size: 46 Copynumber: 6.7 Consensus size: 46
157416802 TCGTGTAAGC
* ** * *
157416812 AGTGTAAGATGATGTCGGGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTTGAGACGAGAGCT
* * *
157416860 AGTGTAAGACATGTTTAGGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACG-AGAGCT
* * * *** * *
157416906 AGTTTAAGACATGACTAGGACATACATCGGCGAAGAGATGATAGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACGAGAG-CT
* * * * *
157416953 -GCGTAAGACCATGTCTAGGACATGGCAT-TGACTTGAG-CTATGAGCC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTTGAGACGA-GAGCT
* * * *
157416999 AGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTAGGACATG-CATCGGCCTTGAGACGAGAGCT
* * * * *
157417047 AGTGTAAGACATGTCTGGGACATGCACCGGCCTCGGGAC-ATAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACGA-GAGCT
*
157417093 AGTGTAAGACATGT-TCGGGACATGCATCGGC
1 AGTGTAAGACATGTCT-AGGACATGCATCGGC
157417124 TAAGTGATAA
Statistics
Matches: 208, Mismatches: 44, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
45 3 0.01
46 103 0.50
47 70 0.34
48 30 0.14
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGACGAGAGCT
Found at i:157417148 original size:187 final size:187
Alignment explanation
Indices: 157416811--157417169 Score: 468
Period size: 187 Copynumber: 1.9 Consensus size: 187
157416801 CTCGTGTAAG
** * * *
157416811 CAGTGTAAGATGATGTCGGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTTT
1 CAGTGTAAGACCATGTCGGGGACATGACATCGACATTGAGACAAGAGCTAGTGTAAGACATGTCT
* * ** *
157416876 AGGACATGCATCGGCCTTGAGATGTAAGCCAGTTTAAGACATGACTAGGACATACATCGGCGAAG
66 AGGACATGCACCGGCCTCGAGACATAAGCCAGTGTAAGACATGACTAGGACATACATCGGCGAAG
* * *
157416941 AGATGATAGTCTGCGTAAGACCATGTCTAGGACATGGCATTGACTTGAGCTATGAGC
131 AGATAATAGTCAGCGTAAGACCATGTCTAGGACATGACATTGACTTGAGCTATGAGC
* * *
157416998 CAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAGACAAGGGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCGGGGACATGACATCGACATTGAGACAAGAGCTAGTGTAAGACATGTCT
* * * * * * *
157417063 GGGACATGCACCGGCCTCGGGACATAAGCTAGTGTAAGACATG-TTCGGGACATGCATCGGCTAA
66 AGGACATGCACCGGCCTCGAGACATAAGCCAGTGTAAGACATGACT-AGGACATACATCGGCGAA
* * *
157417127 GTGATAATAGTCAGTGTAAGACCATGTCTGGGACATGACATTG
130 GAGATAATAGTCAGCGTAAGACCATGTCTAGGACATGACATTG
157417170 GCACTTAACC
Statistics
Matches: 145, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
186 1 0.01
187 144 0.99
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (187 bp):
CAGTGTAAGACCATGTCGGGGACATGACATCGACATTGAGACAAGAGCTAGTGTAAGACATGTCT
AGGACATGCACCGGCCTCGAGACATAAGCCAGTGTAAGACATGACTAGGACATACATCGGCGAAG
AGATAATAGTCAGCGTAAGACCATGTCTAGGACATGACATTGACTTGAGCTATGAGC
Found at i:157418280 original size:21 final size:21
Alignment explanation
Indices: 157418229--157418280 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
157418219 GGGTGTGGGG
157418229 CAGGTCGTGTTACCCTCCCACA
1 CAGGT-GTGTTACCCTCCCACA
* * *
157418251 CGGGCGTGTTACCCTTCCACA
1 CAGGTGTGTTACCCTCCCACA
157418272 CAGGTGTGT
1 CAGGTGTGT
157418281 GCCCTGTTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
CAGGTGTGTTACCCTCCCACA
Found at i:157421918 original size:19 final size:18
Alignment explanation
Indices: 157421868--157421906 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
157421858 TAATCATAAT
157421868 TAAAAGAAAAAATTATTC
1 TAAAAGAAAAAATTATTC
157421886 TAAAAGAAAAAATTATTC
1 TAAAAGAAAAAATTATTC
157421904 TAA
1 TAA
157421907 GTGGAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
TAAAAGAAAAAATTATTC
Found at i:157425303 original size:40 final size:40
Alignment explanation
Indices: 157425258--157425396 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
157425248 GGATATAACG
*
157425258 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
157425298 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * *
157425338 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* *
157425377 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
157425397 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.38
40 49 0.56
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:157425381 original size:79 final size:81
Alignment explanation
Indices: 157425233--157425449 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 81
157425223 GAATCACGTA
* *** * **
157425233 CCTTCGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
*
157425295 GTAACTCGCACGAATG
66 GTAACTCGCACGAACG
* *
157425311 CCTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-T
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAT
*
157425373 ATTAACTCGCACGAACG
65 AGTAACTCGCACGAACG
** * *
157425390 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
157425450 CATCATTCAA
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 8 0.07
79 59 0.51
80 48 0.42
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
GTAACTCGCACGAACG
Found at i:157436693 original size:29 final size:29
Alignment explanation
Indices: 157436659--157436733 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
157436649 TACTCGATTT
*
157436659 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
157436688 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
157436717 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
157436734 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:157436750 original size:29 final size:29
Alignment explanation
Indices: 157436717--157436790 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
157436707 CCTTCGAGCT
157436717 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
157436746 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
157436775 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
157436791 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:157440060 original size:35 final size:35
Alignment explanation
Indices: 157440021--157440090 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
157440011 TGCGAGGTAA
157440021 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
157440056 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
157440091 AACACTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (35 bp):
GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
Found at i:157440830 original size:3 final size:3
Alignment explanation
Indices: 157440820--157440852 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
157440810 CCACTTTATT
157440820 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
157440853 AAGCTACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:157445445 original size:29 final size:28
Alignment explanation
Indices: 157445412--157445466 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
157445402 AAGTTATACC
*
157445412 AATTTGGCCTCGGGCCATGAATATCAGAT
1 AATTTGGCCTCGGGCAATG-ATATCAGAT
*
157445441 AATTTGGCTTCGGGCAATGATATCAG
1 AATTTGGCCTCGGGCAATGATATCAG
157445467 TATTTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (28 bp):
AATTTGGCCTCGGGCAATGATATCAGAT
Found at i:157447665 original size:71 final size:71
Alignment explanation
Indices: 157447581--157447744 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
157447571 CGATTTGTCT
157447581 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
157447646 CTTTCA
66 CTTTCA
* *
157447652 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
157447717 CTTTCA
66 CTTTCA
157447723 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
157447745 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:157447782 original size:71 final size:70
Alignment explanation
Indices: 157447581--157447778 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
157447571 CGATTTGTCT
* * * * *
157447581 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157447646 CTTTCA
65 CTTTCA
* * * *
157447652 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
157447717 CTTTCA
65 CTTTCA
* *
157447723 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
157447779 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:157461265 original size:39 final size:39
Alignment explanation
Indices: 157461211--157461290 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
157461201 TTCTTTGTGA
157461211 AATAAAATGGAAAGCAAAGCAAATCAGATAACAACCTCC
1 AATAAAATGGAAAGCAAAGCAAATCAGATAACAACCTCC
157461250 AATAAAATGGAAAGCAAAGCAAATCAGATAACAACCTCC
1 AATAAAATGGAAAGCAAAGCAAATCAGATAACAACCTCC
157461289 AA
1 AA
157461291 GCGATCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.12
Consensus pattern (39 bp):
AATAAAATGGAAAGCAAAGCAAATCAGATAACAACCTCC
Found at i:157467531 original size:40 final size:40
Alignment explanation
Indices: 157467476--157467615 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
157467466 TTCGAATGAT
*
157467476 ATCCGGGTTGATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
157467516 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
157467556 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
157467597 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
157467616 ACAATCGAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 85 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:157467612 original size:80 final size:80
Alignment explanation
Indices: 157467476--157467629 Score: 204
Period size: 80 Copynumber: 1.9 Consensus size: 80
157467466 TTCGAATGAT
* * * * * *
157467476 ATCCGGGTTGATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
* *
157467541 TGTGCGAGTTACCAA
66 CGAGCGAGTTACCAA
157467556 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGACA
157467619 ATCGAGCGAGT
64 ATCGAGCGAGT
157467630 AGCTATATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.03
80 60 0.94
81 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
CGAGCGAGTTACCAA
Found at i:157472750 original size:20 final size:20
Alignment explanation
Indices: 157472705--157472753 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
157472695 ATTTAAGGAG
*
157472705 AATAATATATATAATAAGTAAT
1 AATAATATATATAAT-A-TAAA
157472727 AATAATAGTATATAAT-TAAA
1 AATAATA-TATATAATATAAA
157472747 AATAATA
1 AATAATA
157472754 CTCATAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 10 0.40
22 7 0.28
23 8 0.32
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
AATAATATATATAATATAAA
Found at i:157472750 original size:23 final size:22
Alignment explanation
Indices: 157472705--157472753 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
157472695 ATTTAAGGAG
*
157472705 AATAATATATATAATAAGTAAT
1 AATAATATATATAATAAGAAAT
157472727 AATAATAGTATATAATTAA-AAAT
1 AATAATA-TATATAA-TAAGAAAT
157472750 AATA
1 AATA
157472754 CTCATAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 7 0.29
23 14 0.58
24 3 0.12
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (22 bp):
AATAATATATATAATAAGAAAT
Found at i:157474417 original size:83 final size:83
Alignment explanation
Indices: 157474293--157474451 Score: 246
Period size: 83 Copynumber: 1.9 Consensus size: 83
157474283 CTTGAATTTG
* * * * * *
157474293 TTTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTCCTTATAAACACAAGAATAC
157474358 CAAATCATCTTTAGTCTA
66 CAAATCATCTTTAGTCTA
* *
157474376 TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTTGATTTGTTTCTTATAAACACAAGAATAC
1 TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTCCTTATAAACACAAGAATAC
157474441 CAAATCATCTT
66 CAAATCATCTT
157474452 GGATCTGTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (83 bp):
TTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTCCTTATAAACACAAGAATAC
CAAATCATCTTTAGTCTA
Found at i:157474589 original size:119 final size:119
Alignment explanation
Indices: 157474375--157474809 Score: 647
Period size: 119 Copynumber: 3.7 Consensus size: 119
157474365 TCTTTAGTCT
* * * * * * * * * * * *
157474375 ATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTTGATTTGTTTCTTATAAACACAAGAATA
1 ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
* ** **
157474440 CCAAATCATCTTGGATCTGTTTCAGCATAAACATCTGAAGGT-TAGATCTGCTAT
66 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAA-GTCTAGATCTGCTGC
*
157474494 ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTGAGCACAAGGATG
1 ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
157474559 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGC
66 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGC
* * *
157474613 CTTTGAGAACGTCTGAGACTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
1 ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
157474678 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGC
66 CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGC
* *
157474732 CTTTGGGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
1 ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
157474797 CCAAATCATCTTG
66 CCAAATCATCTTG
157474810 AGTCTATTTG
Statistics
Matches: 290, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
118 2 0.01
119 288 0.99
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (119 bp):
ATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATG
CCAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGTCTAGATCTGCTGC
Found at i:157483178 original size:28 final size:28
Alignment explanation
Indices: 157483147--157483201 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
157483137 TGGTGACGAG
**
157483147 ATTGGCACTAAGTGTGCGTGCTGGAAAT
1 ATTGGCACTAAGTGTGCAAGCTGGAAAT
157483175 ATTGGCACTAAGTGTGCAAGCTGGAAA
1 ATTGGCACTAAGTGTGCAAGCTGGAAA
157483202 AATACGGCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (28 bp):
ATTGGCACTAAGTGTGCAAGCTGGAAAT
Found at i:157492976 original size:40 final size:40
Alignment explanation
Indices: 157492921--157493083 Score: 290
Period size: 40 Copynumber: 4.1 Consensus size: 40
157492911 CAATGGACTT
157492921 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
157492961 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
157493001 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
1 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
* * **
157493041 TGTATCCGAACTAAGTTCCGAAGGGCATTCGTGCCGGTGA
1 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
157493081 TGT
1 TGT
157493084 GTATTCGGGC
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGA
Found at i:157493282 original size:25 final size:25
Alignment explanation
Indices: 157493241--157493295 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
157493231 GGTGTAATAA
157493241 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
*
157493266 TGAATG-ATTAGAGGCACTATGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
*
157493291 CGAAT
1 TGAAT
157493296 TCCTTTAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:157494924 original size:13 final size:13
Alignment explanation
Indices: 157494906--157494930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
157494896 TAATGGTATA
157494906 TTGAATCCATGAT
1 TTGAATCCATGAT
157494919 TTGAATCCATGA
1 TTGAATCCATGA
157494931 GAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:157495962 original size:40 final size:40
Alignment explanation
Indices: 157495826--157495979 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
157495816 GTGTGCATGA
* *
157495826 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
157495866 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
157495906 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
157495946 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
157495980 CTTGGTGCGG
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:157502001 original size:43 final size:43
Alignment explanation
Indices: 157501953--157502102 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
157501943 GTTACTGAGA
*
157501953 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
*
157501996 TGTGATTA-AGTGGAAGACCAT-TTCTGGGACATTGGCATCGTTAT
1 TGTGATTACA-TGTAAGACCATGTT-TGGGACATTGGCATCG-TAT
* * * *
157502040 TCG-G-TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 T-GTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
**
157502081 ATGTGACAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
157502103 ATCTGGGATA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
41 3 0.03
42 5 0.06
43 71 0.82
44 7 0.08
45 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT
Found at i:157505860 original size:20 final size:20
Alignment explanation
Indices: 157505835--157505873 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
157505825 CATTAAATTT
* *
157505835 AATTTAGTATTAAGATAATC
1 AATTTAATATTAAAATAATC
157505855 AATTTAATATTAAAATAAT
1 AATTTAATATTAAAATAAT
157505874 AAAATACTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTTAATATTAAAATAATC
Found at i:157506570 original size:15 final size:15
Alignment explanation
Indices: 157506550--157506580 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
157506540 TTTGTTGAGC
157506550 TAGTGAAGGGACCAA
1 TAGTGAAGGGACCAA
157506565 TAGTGAAGGGACCAA
1 TAGTGAAGGGACCAA
157506580 T
1 T
157506581 CAGACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.32, T:0.16
Consensus pattern (15 bp):
TAGTGAAGGGACCAA
Found at i:157510085 original size:19 final size:20
Alignment explanation
Indices: 157510048--157510086 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
157510038 AAATTAGCAT
*
157510048 TTTGTAATTAAATAAAAAAA
1 TTTGAAATTAAATAAAAAAA
157510068 TTTGAAATTAAA-AAAAAAA
1 TTTGAAATTAAATAAAAAAA
157510087 GTGTTCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (20 bp):
TTTGAAATTAAATAAAAAAA
Found at i:157513988 original size:18 final size:18
Alignment explanation
Indices: 157513959--157514006 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
157513949 CAAAGAGGGT
*
157513959 ATTTTTGAAAAAAAATCTG
1 ATTTTTGAAAATAAAT-TG
*
157513978 ATTTTTGAAAATAAATTT
1 ATTTTTGAAAATAAATTG
*
157513996 TTTTTTGAAAA
1 ATTTTTGAAAA
157514007 GAGATAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (18 bp):
ATTTTTGAAAATAAATTG
Found at i:157515277 original size:254 final size:253
Alignment explanation
Indices: 157514763--157515278 Score: 953
Period size: 253 Copynumber: 2.0 Consensus size: 253
157514753 TAAAAGGGGC
*
157514763 AGTG-TCATTATTGCGGGACGAGGCGTATCAGTGGTGGATCACTGTGAGAGAGGGTACCCCAGCT
1 AGTGTTCATTACTGCGGGACGAGGCGTATCAGTGGTGGATCACTGTGAGAGAGGGTACCCCAGCT
*
157514827 GAGAGGGTAACTTGGGAGTTGTTCAAGCAGTCCTTCAAGGTGAAATATGTCGGAGCTAGCTATGT
66 GAGAGGGTAACTTGGGAGTTGTTCAAGCAGTCCTTCAAGGTGAAATATGCCGGAGCTAGCTATGT
157514892 CGATCACGAAGAAAGGAATTTCTGAACCTGACCCAAGGTAGTAAGACCGTTGCTGAATATGAGGC
131 CGATCACGAAGAAAGGAATTTCTGAACCTGACCCAAGGTAGTAAGACCGTTGCTGAATATGAGGC
* * *
157514957 AGAGTTTCTACGATTGAGCCGATATGCTAGTGGCATTGTCTCCACCGAATATGAGTGT
196 AGAGTTTCTACGATTGAGCCGATACGCCAGTGGCATTGTCTCCACCGAATATGAGCGT
157515015 AGTGTTCATTACTGCGGGACGAGGCGTATCAGTGGTGGATCACTGTGAGAGAGGGTACCCCAGCT
1 AGTGTTCATTACTGCGGGACGAGGCGTATCAGTGGTGGATCACTGTGAGAGAGGGTACCCCAGCT
157515080 GAGAGGGTAACTTGGGAGTTGTTCAAGCAGTCCTTCAAGGTGAAATATGCCGGAGCTAGCTATGT
66 GAGAGGGTAACTTGGGAGTTGTTCAAGCAGTCCTTCAAGGTGAAATATGCCGGAGCTAGCTATGT
* *
157515145 CGATGCACGAAGAAAGGAATTTCTGAACTTGACCCAGGGTAGTAAGACCGTTGCTGAATATGAGG
131 CGAT-CACGAAGAAAGGAATTTCTGAACCTGACCCAAGGTAGTAAGACCGTTGCTGAATATGAGG
157515210 CAGAGTTTCTACGATTGAGCCGATACGCCAGTGGCATTGTCTCCACCGAATATGAGCGT
195 CAGAGTTTCTACGATTGAGCCGATACGCCAGTGGCATTGTCTCCACCGAATATGAGCGT
157515269 AGTGTTCATT
1 AGTGTTCATT
157515279 TTGAGGATGG
Statistics
Matches: 255, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
252 4 0.02
253 127 0.50
254 124 0.49
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (253 bp):
AGTGTTCATTACTGCGGGACGAGGCGTATCAGTGGTGGATCACTGTGAGAGAGGGTACCCCAGCT
GAGAGGGTAACTTGGGAGTTGTTCAAGCAGTCCTTCAAGGTGAAATATGCCGGAGCTAGCTATGT
CGATCACGAAGAAAGGAATTTCTGAACCTGACCCAAGGTAGTAAGACCGTTGCTGAATATGAGGC
AGAGTTTCTACGATTGAGCCGATACGCCAGTGGCATTGTCTCCACCGAATATGAGCGT
Found at i:157519630 original size:40 final size:40
Alignment explanation
Indices: 157519585--157519751 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
157519575 CGGAATATAA
157519585 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
157519625 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
157519665 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
157519705 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
157519744 CCGGATAT
1 CCGGATAT
157519752 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157519735 original size:80 final size:79
Alignment explanation
Indices: 157519601--157519751 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
157519591 ATAATCACGT
*
157519601 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
157519666 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
157519681 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
157519744 CCGGATAT
64 CCGGATAT
157519752 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:157521010 original size:57 final size:54
Alignment explanation
Indices: 157520943--157521056 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 54
157520933 CCTCCCCCTT
157520943 TTTCCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTCTTTTC
1 TTTCCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTTT-TTTTC
***
157521000 TTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTC
1 TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTTC
157521054 TTT
1 TTT
157521057 TTTTTTCTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
54 8 0.15
55 7 0.13
57 33 0.63
58 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (54 bp):
TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTTC
Found at i:157521059 original size:10 final size:10
Alignment explanation
Indices: 157521044--157521069 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
157521034 GGATGAACAT
157521044 TTTTTTTTTC
1 TTTTTTTTTC
157521054 TTTTTTTTTC
1 TTTTTTTTTC
157521064 TTTTTT
1 TTTTTT
157521070 CATACTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:157522851 original size:55 final size:54
Alignment explanation
Indices: 157522707--157522899 Score: 210
Period size: 54 Copynumber: 3.6 Consensus size: 54
157522697 AACTTTCCAT
* * * *
157522707 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATAGAACTAATCAA
* * ** * * *
157522760 TGCCATG-CTTGGCATGGTCTTACACGGGACCTTTGCCTTATAGTAACTAATTAA
1 TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATAG-AACTAATCAA
* * *
157522814 TACCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATAGAACTAATCAA
* * *
157522868 TGCCGTGCCTTGGCATGGTCTTACATGATATC
1 TGCCATGTCTTGACATGGTCTTACATGATATC
157522900 CTAAACTTAC
Statistics
Matches: 114, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
52 28 0.25
53 8 0.07
54 49 0.43
55 29 0.25
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTATAGAACTAATCAA
Found at i:157522998 original size:47 final size:47
Alignment explanation
Indices: 157522881--157523002 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
157522871 CGTGCCTTGG
* ***
157522881 CATGGTCTTACATGATATCCTAAACTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
157522928 CATGGTCTTACATGGTATTCTTGTCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
157522975 CATGGCCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
157523003 GTGCCAATGC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:157523699 original size:31 final size:30
Alignment explanation
Indices: 157523664--157523721 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
157523654 CTAACTCAAA
157523664 CTTTGGAAAAATTACAATTTTGCCCCTAAAC
1 CTTT-GAAAAATTACAATTTTGCCCCTAAAC
* * **
157523695 CTTTGCAGAATTATGATTTTGCCCCTA
1 CTTTGAAAAATTACAATTTTGCCCCTA
157523722 GGCTCAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (30 bp):
CTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:157526374 original size:27 final size:28
Alignment explanation
Indices: 157526318--157526387 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
157526308 AAACTTGTAC
157526318 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
157526346 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
157526373 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
157526388 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:157526398 original size:27 final size:27
Alignment explanation
Indices: 157526318--157526399 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
157526308 AAACTTGTAC
* *
157526318 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
157526346 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
157526373 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
157526400 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:157536774 original size:71 final size:69
Alignment explanation
Indices: 157536669--157536843 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
157536659 TTTTCAAGGG
* *
157536669 AAATCAACTCATATTGCGAG-AGATGAATTAAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAATTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
157536733 GTTTT
65 GTTTT
* * ** * *
157536738 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGATGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAATTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
157536803 TGTTTT
64 TGTTTT
** *
157536809 AAATTGACTCATATTGCGAGAGGTGAATTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAATTAAGCCT
157536844 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 30 0.33
71 58 0.64
72 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAATTAAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:157537181 original size:139 final size:140
Alignment explanation
Indices: 157536941--157537287 Score: 581
Period size: 139 Copynumber: 2.5 Consensus size: 140
157536931 TTAATTTCAA
157536941 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
157537006 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTAGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAAATCATATTGCGAGAGGTAGGTTGAACCTTTTAATTTCTACTTTT
157537071 TCAAAATCAG
131 TCAAAATCAG
* *
157537081 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCGATTT-TGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
157537145 TTTATGTTGTTCAAGAATCAAATCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAAATCATATTGCGAGAGGTAGGTTGAACCTTTTAATTTCTACTTTT
157537210 TCAAAATCAG
131 TCAAAATCAG
* *
157537220 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GTTTCACATGCTGAGGTATTTTCAATTTCTATCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTCAC--GCTGAGGTATTTTCAATTTCTGT-TT
157537284 TCAA
62 TCAA
157537288 AAAAAAATTC
Statistics
Matches: 193, Mismatches: 9, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
138 1 0.01
139 113 0.59
140 53 0.27
141 18 0.09
142 2 0.01
143 6 0.03
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAAATCATATTGCGAGAGGTAGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:157537383 original size:72 final size:72
Alignment explanation
Indices: 157537197--157537428 Score: 277
Period size: 72 Copynumber: 3.1 Consensus size: 72
157537187 TGAACCTTTT
* ** *** * *
157537197 AATTTCTACTTTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCACATGCT
1 AATTTCTA--TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC--AAGACACGTT
*
157537261 GAGGTATTTTC
62 GAGGTAATTTC
157537272 AATTTCTATCTTTCAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 AATTTCTAT-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
157537337 TTGAGGTAATTTC
60 TTGAGGTAATTTC
*
157537350 AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGG
1 AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
157537415 TAATTTC
66 TAATTTC
157537422 AATTTCT
1 AATTTCT
157537429 GTGAGAAATG
Statistics
Matches: 140, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
72 65 0.46
73 1 0.01
74 4 0.03
75 8 0.06
77 4 0.03
78 24 0.17
79 4 0.03
80 30 0.21
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (72 bp):
AATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:157537442 original size:49 final size:49
Alignment explanation
Indices: 157537382--157537479 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
157537372 CTCATATTGC
* *
157537382 GAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGT
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
* *
157537431 GAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGT
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
157537480 TTTTCAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (49 bp):
GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:157537539 original size:124 final size:121
Alignment explanation
Indices: 157537310--157537554 Score: 373
Period size: 124 Copynumber: 2.0 Consensus size: 121
157537300 CTCATATTGC
* *
157537310 GAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTC
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAAATCAACTC
* *
157537375 ATATTGCGAGAAATGAGTTGAGCCTCAAGATACGTTGAGGTAATTTCAATTTCTGT
66 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
* * *
157537431 GAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAA
1 GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT-ATTTTC--AAAAATCAA
** *
157537496 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
63 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
157537555 TGACAAAAAA
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
121 44 0.40
122 5 0.05
124 62 0.56
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (121 bp):
GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAAATCAACTC
ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:157537564 original size:75 final size:75
Alignment explanation
Indices: 157537437--157537627 Score: 276
Period size: 74 Copynumber: 2.5 Consensus size: 75
157537427 CTGTGAGAAA
* * **
157537437 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATA
157537502 TTGCGAGAGG
66 TTGCGAGAGG
* *
157537512 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGACAAAAAAATCAACTCGTA
1 TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATA
*
157537576 TTGTGAGAGG
66 TTGCGAGAGG
* *
157537586 CGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTC
1 TGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTC
157537628 CATTTTTCAA
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
74 43 0.41
75 39 0.38
76 22 0.21
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (75 bp):
TGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGACAAAAAAATCAACTCATA
TTGCGAGAGG
Found at i:157537699 original size:94 final size:89
Alignment explanation
Indices: 157537558--157537776 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 89
157537548 TTTCTGTTGA
* * * * *
157537558 CAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACACACCGAGGTATTTTCA
** * * **
157537623 ATTTCCATTTTTCAATTTCTGCTTTT
66 AAATCCACTTTTCAAGTTAAG--TTT
* *
157537649 CAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA-GTCACATATCGAGGTATT
1 C---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT-CAGGTCACACACCGAGGTATT
**
157537713 TTCAAAATCTGCTTTTCAAGTTAAGTTT
62 TTCAAAATCCACTTTTCAAGTTAAGTTT
157537741 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
157537777 GCCTTGGCTC
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
89 35 0.32
91 1 0.01
92 4 0.04
94 67 0.61
95 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (89 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGTCACACACCGAGGTATTTTCA
AAATCCACTTTTCAAGTTAAGTTT
Found at i:157537907 original size:245 final size:247
Alignment explanation
Indices: 157537653--157538100 Score: 697
Period size: 245 Copynumber: 1.8 Consensus size: 247
157537643 GCTTTTCAAA
*
157537653 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAA
1 AAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAA
* *
157537718 AATCTGCTTTTCAAGTT-AAGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
66 AATCTGCTTTTCAAATTCAAGTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
*
157537782 GGCTCACGCGCTGAGCTATTTTC-ATT-TT-CTATCTTTCAAAAAAATCAACTCATATTGCGAGA
129 GGCTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATCAACTCATATTGCGAGA
157537844 GGTGAGTTGAGCTTCAGATTACATACTGAGGTATTTTTTCAATTTATATTTTTC
194 GGTGAGTTGAGCTTCAGATTACATACTGAGGTATTTTTTCAATTTATATTTTTC
* * ** *
157537898 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAA
* * *
157537963 AATCTGTTTTTCAAATTCTATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
66 AATCTGCTTTTCAAATTCAAGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
* * * * *
157538028 CTCACGTACTGAGCTATTTTCAATTCTTATTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGG
131 CTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATCAACTCATATTGCGAGAGG
157538093 TGAGTTGA
196 TGAGTTGA
157538101 ACCTCCAGTC
Statistics
Matches: 182, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
244 58 0.32
245 77 0.42
246 7 0.04
247 40 0.22
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (247 bp):
AAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAA
AATCTGCTTTTCAAATTCAAGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
CTCACGCACTGAGCTATTTTCAATTCTTACTATCTTTCAAAAAAATCAACTCATATTGCGAGAGG
TGAGTTGAGCTTCAGATTACATACTGAGGTATTTTTTCAATTTATATTTTTC
Found at i:157537931 original size:79 final size:76
Alignment explanation
Indices: 157537738--157538100 Score: 260
Period size: 79 Copynumber: 4.5 Consensus size: 76
157537728 TCAAGTTAAG
* * * *
157537738 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTT
* *
157537803 TCATTTTCTATC
65 TCAATTTATATC
* * *
157537815 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACATACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATCACACACTGAGCTA--T
*
157537880 TTTCAATTTATATT
63 TTTCAATTTATATC
* * ** * ** *
157537894 TTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACT-GAGCTATT
*
157537958 TTCAAAATCTGTTTTTCAAATTC
64 TTC--AA------TTT-ATA-TC
*** * * * **
157537981 TATTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATT
1 T-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATT
* *
157538046 TTCAATTCTTATTTTT
64 TTCAA-T-TTA-TATC
*
157538062 TTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
157538101 ACCTCCAGTC
Statistics
Matches: 228, Mismatches: 39, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
76 3 0.01
77 56 0.25
78 1 0.00
79 63 0.28
80 35 0.15
81 5 0.02
82 2 0.01
85 3 0.01
86 4 0.02
87 2 0.01
88 53 0.23
89 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (76 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCACACACTGAGCTATTTT
CAATTTATATC
Found at i:157538122 original size:168 final size:166
Alignment explanation
Indices: 157537815--157538221 Score: 550
Period size: 168 Copynumber: 2.4 Consensus size: 166
157537805 ATTTTCTATC
* * * * *
157537815 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATTACATACTGAGGTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACGTACTGAGCTA--
* * **
157537879 TTTTCAA-TTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTC
62 TTTTCAATTTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTC
* * * *
157537943 ACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTAT
127 ACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATT-AAG
*
157537984 TTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTT
* * *
157538048 CAATTCTTATTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCAC
66 CAATT-TTA-TATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCAC
*
157538113 ATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAG
129 ATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG
**
157538151 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTT
157538216 CAATTT
66 CAATTT
157538222 CTGTTTTTAA
Statistics
Matches: 212, Mismatches: 21, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
165 7 0.03
166 1 0.00
167 55 0.26
168 145 0.68
169 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (166 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTT
CAATTTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACAT
ATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAAG
Found at i:157538910 original size:23 final size:23
Alignment explanation
Indices: 157538884--157538952 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
157538874 TAAGCCCTCC
157538884 AAAAAAACCTAACCAAAAAAAAA
1 AAAAAAACCTAACCAAAAAAAAA
*
157538907 AAAAAAA-CTAACCCAAAAAAAGA
1 AAAAAAACCTAA-CCAAAAAAAAA
* **
157538930 AGAAAAACCTAACCCCAAAAAAA
1 AAAAAAACCTAACCAAAAAAAAA
157538953 CCTAACCTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
22 4 0.10
23 31 0.79
24 4 0.10
ACGTcount: A:0.72, C:0.20, G:0.03, T:0.04
Consensus pattern (23 bp):
AAAAAAACCTAACCAAAAAAAAA
Found at i:157538925 original size:24 final size:23
Alignment explanation
Indices: 157538884--157538952 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 23
157538874 TAAGCCCTCC
157538884 AAAAAAACCTAA-CCAAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAA
*
157538906 AAAAAAAACTAACCCAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAA-A
* *
157538930 AGAAAAACCTAACCCCAAAAAAA
1 AAAAAAACCTAACCCAAAAAAAA
157538953 CCTAACCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
22 11 0.27
23 10 0.24
24 20 0.49
ACGTcount: A:0.72, C:0.20, G:0.03, T:0.04
Consensus pattern (23 bp):
AAAAAAACCTAACCCAAAAAAAA
Found at i:157538964 original size:15 final size:16
Alignment explanation
Indices: 157538932--157538968 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
157538922 AAAAAAGAAG
157538932 AAAAACCTAACCCCAA
1 AAAAACCTAACCCCAA
*
157538948 AAAAACCTAA-CCTAA
1 AAAAACCTAACCCCAA
157538963 AAAAAC
1 AAAAAC
157538969 AAAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.62, C:0.30, G:0.00, T:0.08
Consensus pattern (16 bp):
AAAAACCTAACCCCAA
Found at i:157540819 original size:35 final size:35
Alignment explanation
Indices: 157540775--157540942 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
157540765 TCCTCAGTGA
** *
157540775 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ***
157540810 AATGCCATACCTACATTTTTTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACA-TTTCACAACTCAGTAT-G----GAT
*
157540851 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
157540886 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
157540921 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
157540943 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
35 72 0.62
36 16 0.14
39 1 0.01
40 14 0.12
41 14 0.12
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:157540865 original size:76 final size:71
Alignment explanation
Indices: 157540775--157540942 Score: 196
Period size: 76 Copynumber: 2.3 Consensus size: 71
157540765 TCCTCAGTGA
** * * ***
157540775 AATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTTTTTAACTCAG
1 AATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACA-TTTCACAACTCAG
157540839 TATGGATTTG
64 TATGGA--TG
*
157540849 ATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACTCAG
1 --AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTCAG
157540914 TATGGATG
64 TATGGATG
157540922 -ATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
157540943 CTTTTCCATG
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 21 0.25
73 2 0.02
75 19 0.23
76 41 0.49
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (71 bp):
AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTCAGTA
TGGATG
Done.