Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 509 of 770
Found at i:157545024 original size:2 final size:2
Alignment explanation
Indices: 157545019--157545047 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
157545009 CTAAATTAAA
157545019 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
157545048 AAGGTGGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:157549960 original size:17 final size:18
Alignment explanation
Indices: 157549938--157549973 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
157549928 TAAATGAGTT
157549938 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
157549955 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
157549973 A
1 A
157549974 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:157550637 original size:41 final size:40
Alignment explanation
Indices: 157550589--157550688 Score: 107
Period size: 38 Copynumber: 2.5 Consensus size: 40
157550579 TCGACCTCAA
* *
157550589 GTCGATGAGACACTGGGTGTCACTATTTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
* ** *
157550629 ATTCGATGAGGTACT-GG-GT-ACCACTTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
*
157550667 GCCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
157550689 ACTTTGCTTC
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
37 10 0.22
38 18 0.39
39 4 0.09
40 3 0.07
41 11 0.24
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
GTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATAG
Found at i:157550693 original size:38 final size:39
Alignment explanation
Indices: 157550591--157550699 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 39
157550581 GACCTCAAGT
* **
157550591 CGATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA--ACTTTACTTCGGATAGAGC
** * * *
157550632 CGATGAGGTACTGGGT-ACCACTTTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
*
157550669 CGATGAGACACTGGGTGTCAACTTTGCTTCG
1 CGATGAGACACTGGGTGTCAACTTTACTTCG
157550700 AACTATCCGA
Statistics
Matches: 54, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 14 0.26
38 25 0.46
40 1 0.02
41 14 0.26
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGC
Found at i:157551956 original size:18 final size:18
Alignment explanation
Indices: 157551933--157551968 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
157551923 CTTTTGAGGA
157551933 AAAAAAAAGATGATGGTT
1 AAAAAAAAGATGATGGTT
157551951 AAAAAAAAGATGATGGTT
1 AAAAAAAAGATGATGGTT
157551969 GTGATATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22
Consensus pattern (18 bp):
AAAAAAAAGATGATGGTT
Found at i:157560915 original size:23 final size:23
Alignment explanation
Indices: 157560889--157560932 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
157560879 TTTTACTAAT
157560889 TGTCGTAACCATTTTTTTTAAGC
1 TGTCGTAACCATTTTTTTTAAGC
*
157560912 TGTCGTAACTATTTTTTTTAA
1 TGTCGTAACCATTTTTTTTAA
157560933 AAAAAACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.52
Consensus pattern (23 bp):
TGTCGTAACCATTTTTTTTAAGC
Found at i:157562629 original size:25 final size:24
Alignment explanation
Indices: 157562574--157562631 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
157562564 ATATATATGT
*
157562574 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
157562598 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
157562624 ATATAATA
1 ATATAATA
157562632 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:157564272 original size:86 final size:86
Alignment explanation
Indices: 157564127--157564371 Score: 273
Period size: 86 Copynumber: 2.8 Consensus size: 86
157564117 TTTCAGCCTG
* * * * *
157564127 TTACCCTACTGCTTAAGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGGG-
1 TTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCATCTTCGATCTG-ATCCACTACTGCTTAGGGA
** * *
157564189 TTTTAGATCTGTATACTCAACCTA
64 GATAAGATCTGCA-ACTCAACCTA
* * *
157564213 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGATCCACTACTGCTTAGGGAGA
* * *
157564278 TAAGATCTGCAATTTAACCTG
66 TAAGATCTGCAACTCAACCTA
* *
157564299 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCTTCTTCGATCT-ATACCACTACTGCTTAGGGGG
1 TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGAT-CCACTACTGCTTAGGGAG
157564363 ATAAGATCT
65 ATAAGATCT
157564372 ATAAATCTTC
Statistics
Matches: 137, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
85 6 0.04
86 122 0.89
87 9 0.07
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGTTTAAGGTTCTTCATCTTCGATCTGATCCACTACTGCTTAGGGAGA
TAAGATCTGCAACTCAACCTA
Found at i:157564577 original size:43 final size:42
Alignment explanation
Indices: 157564481--157564980 Score: 393
Period size: 43 Copynumber: 11.5 Consensus size: 42
157564471 CAGCCTATTA
** * * *
157564481 CCCTACTGCTTAGGGGGTTAAGGCCCATCTTCTTTGATCTGTTT
1 CCCTACTGCTTA-GGGGTTAA-GATCTTCATCTTCGATCTGTTT
157564525 CCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAAGATCTTCATCTTCGATCTGTTT
157564568 CCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTT
1 CCCTACTGCTTAGG-GGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * *
157564611 CCCTACTGCCTAGGGAGATAAGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAGGG-GTTAAGATCTTCATCTTCGATCTGTTT
* * * *
157564653 CCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
* * *
157564697 CCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGTTAAGATCT-T-CATCTTCGA-TCTGTTT
* * * * * *
157564741 CCCTACTGCTCAGGGGGTTAA-AGCTTGTAAAT-TTGGCT-TGTTA
1 CCCTACTGCTTA-GGGGTTAAGATC-T-T-CATCTTCGATCTGTTT
* *
157564784 CCCTACTGCATAGGGGGTTAA-AGTCCATCATCTTCGATCTGTTT
1 CCCTACTGCTTA-GGGGTTAAGA-T-CTTCATCTTCGATCTGTTT
*
157564828 CCCTACTGCTTAAGGGGTTAAGATTTTCATCTTCGATCTGTTT
1 CCCTACTGCTT-AGGGGTTAAGATCTTCATCTTCGATCTGTTT
* * * * * * * *
157564871 TCCTACTGCTTAGAGAGATAGGATCTGCA-ATTCGGTCTGTTA
1 CCCTACTGCTTAG-GGGTTAAGATCTTCATCTTCGATCTGTTT
* * * * *
157564913 CCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATTTGTTT
1 CCCTACTGCTTAGGGG-TTAAGA-TCTTCATCTTCGATCTGTTT
157564957 CCCTACTGCTTAGGGGATTAAGAT
1 CCCTACTGCTTAGGGG-TTAAGAT
157564981 TTGTAAATCT
Statistics
Matches: 365, Mismatches: 70, Indels: 43
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.01
42 58 0.16
43 167 0.46
44 119 0.33
45 18 0.05
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (42 bp):
CCCTACTGCTTAGGGGTTAAGATCTTCATCTTCGATCTGTTT
Found at i:157564817 original size:260 final size:260
Alignment explanation
Indices: 157564520--157565027 Score: 842
Period size: 260 Copynumber: 2.0 Consensus size: 260
157564510 TTCTTTGATC
* * *
157564520 TGTTTCCCTACTGCTTAGGAGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTT-AGGAG
1 TGTTACCCTACTGCATAGGAGGTTAAGATCATCATCTTCGATCTGTTTCCCTACTGCTTAAGG-G
*
157564584 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGGGAGATAAGATCTGCAATTCGGTCT
65 GTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGAGAGATAAGATCTGCAATTCGGTCT
157564649 GTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG-
130 GTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGA
*
157564713 TTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTCAGGGGGTTAAAGCTTGTAAATTTGGC
195 TTAAGATCTGTAAATCTTCAGCCTGCTACCCTACTGCTCAGGGGGTTAAAGCTTGTAAATTTGGC
157564778 T
260 T
*
157564779 TGTTACCCTACTGCATAGGGGGTTAA-AGTCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGG
1 TGTTACCCTACTGCATAGGAGGTTAAGA-T-CATCATCTTCGATCTGTTTCCCTACTGCTTAAGG
* * * *
157564843 GGTTAAGATTTTCATCTTCGATCTGTTTTCCTACTGCTTAGAGAGATAGGATCTGCAATTCGGTC
64 GGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGAGAGATAAGATCTGCAATTCGGTC
*
157564908 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATTTGTTTCCCTACTGCTTAGGGG
129 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
* * *
157564973 ATTAAGATTTGTAAATCTTCAGCCTGCTACCCTACTGCTTAGGGGGTTAAGGCTT
194 ATTAAGATCTGTAAATCTTCAGCCTGCTACCCTACTGCTCAGGGGGTTAAAGCTT
157565028 ATGAATTCAC
Statistics
Matches: 231, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
258 1 0.00
259 24 0.10
260 153 0.66
261 53 0.23
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (260 bp):
TGTTACCCTACTGCATAGGAGGTTAAGATCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGGG
TTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCCTAGAGAGATAAGATCTGCAATTCGGTCTG
TTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGAT
TAAGATCTGTAAATCTTCAGCCTGCTACCCTACTGCTCAGGGGGTTAAAGCTTGTAAATTTGGCT
Found at i:157577511 original size:40 final size:40
Alignment explanation
Indices: 157577466--157577632 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
157577456 CGGAATATAA
157577466 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
157577506 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
157577546 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
157577586 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
157577625 CCGGATAT
1 CCGGATAT
157577633 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157578480 original size:17 final size:19
Alignment explanation
Indices: 157578457--157578502 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
157578447 AAGAAGCATG
157578457 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
157578475 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
157578493 AATCATGCTC
1 AATCATGCTC
157578503 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:157585483 original size:40 final size:40
Alignment explanation
Indices: 157585438--157585604 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
157585428 CGGAATATAA
157585438 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
157585478 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
157585518 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
157585558 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
157585597 CCGGATAT
1 CCGGATAT
157585605 CATTCAATTT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 14 0.13
40 95 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157586449 original size:17 final size:19
Alignment explanation
Indices: 157586426--157586471 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
157586416 AAGAAGCATG
157586426 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
157586444 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
157586462 AATCATGCTC
1 AATCATGCTC
157586472 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:157592273 original size:29 final size:29
Alignment explanation
Indices: 157592241--157592375 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
157592231 ATACCCTCCG
** * *
157592241 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
157592270 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157592299 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
157592328 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157592357 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
157592376 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:157592308 original size:58 final size:58
Alignment explanation
Indices: 157592187--157592376 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
157592177 TACTCGATTT
* * * *** *
157592187 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
157592245 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
157592303 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
157592361 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
157592377 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:157592806 original size:143 final size:144
Alignment explanation
Indices: 157592647--157592937 Score: 557
Period size: 144 Copynumber: 2.0 Consensus size: 144
157592637 TAGCATGGCT
157592647 GAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-TTTTTGTTA
1 GAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTTTTGTTA
*
157592711 AACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGGAAGA
66 AACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGGAAAA
157592776 CAACATGCATGACC
131 CAACATGCATGACC
157592790 GAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTTTTGTTA
1 GAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTTTTGTTA
157592855 AACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGGAAAA
66 AACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGGAAAA
*
157592920 CAACATGCATGGCC
131 CAACATGCATGACC
157592934 GAAT
1 GAAT
157592938 TTTAACTCAC
Statistics
Matches: 145, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
143 55 0.38
144 90 0.62
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.22
Consensus pattern (144 bp):
GAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTTTTGTTA
AACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGGAAAA
CAACATGCATGACC
Found at i:157599855 original size:29 final size:29
Alignment explanation
Indices: 157599823--157599957 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
157599813 ATACCCTCCG
** * *
157599823 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
157599852 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157599881 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
157599910 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
157599939 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
157599958 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:157599890 original size:58 final size:58
Alignment explanation
Indices: 157599769--157599958 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
157599759 TACTCGATTT
* * * *** *
157599769 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
157599827 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
157599885 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
157599943 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
157599959 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:157600877 original size:144 final size:143
Alignment explanation
Indices: 157600603--157600901 Score: 580
Period size: 144 Copynumber: 2.1 Consensus size: 143
157600593 AAATTCTATA
157600603 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
157600668 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
157600733 AGGAAGACAACAT
131 AGGAAAACAACAT
157600746 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-T
157600811 TTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
65 TTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACC
157600876 AAGGAAAACAACAT
130 AAGGAAAACAACAT
157600890 GCATGGCCGAAT
1 GCATGGCCGAAT
157600902 TTTAACTCAC
Statistics
Matches: 154, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
143 63 0.41
144 91 0.59
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:157609810 original size:116 final size:116
Alignment explanation
Indices: 157609606--157609837 Score: 428
Period size: 116 Copynumber: 2.0 Consensus size: 116
157609596 AATAGTAGAG
*
157609606 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGGCGGACGCATAAACCG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGCCGGACGCATAAACCG
*
157609671 AGAATGCCCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
66 AGAACGCCCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
*
157609722 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGCCGGACGCATAAACTG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGCCGGACGCATAAACCG
*
157609787 AGAACGCCCGATAAATAGAAACTATGATAGAACGAGCTCAATACCTTTCCA
66 AGAACGCCCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
157609838 ATCAACATAA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 112 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (116 bp):
GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGCCGGACGCATAAACCG
AGAACGCCCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
Found at i:157617844 original size:29 final size:29
Alignment explanation
Indices: 157617810--157617892 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
157617800 TGCCGTATTT
*
157617810 TTTCCAGCATGTACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
157617839 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
157617868 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
157617893 ATCTCGTCAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:157619085 original size:20 final size:20
Alignment explanation
Indices: 157619044--157619096 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
157619034 AATGAACACT
*
157619044 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
157619062 TTTTTCTTCATATTCTCTTT-
1 TTTTTCTTCAT-TTCTCTTTG
*
157619082 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
157619097 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:157623590 original size:31 final size:31
Alignment explanation
Indices: 157623555--157623618 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
157623545 CGTTTACAGT
157623555 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
157623586 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
157623617 AA
1 AA
157623619 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:157629916 original size:31 final size:31
Alignment explanation
Indices: 157629881--157629944 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
157629871 CGTTTACAGT
157629881 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
157629912 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
157629943 AA
1 AA
157629945 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:157637819 original size:40 final size:40
Alignment explanation
Indices: 157637615--157637819 Score: 182
Period size: 40 Copynumber: 5.1 Consensus size: 40
157637605 CGGAATTTAA
**
157637615 CCGGATATAGCT-ACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAACGCCTTCGGGACATAGC
* * * *
157637655 CCGGTTATAGCAACTCGCATAAACGCCTTCGGGACATAAC
1 CCGGATATAGTAACTCGCACAAACGCCTTCGGGACATAGC
* * * * * **
157637695 CCGAATTTAGTAACTCGCATAAATGCCTTCGGGACTTAAT
1 CCGGATATAGTAACTCGCACAAACGCCTTCGGGACATAGC
* * * *
157637735 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCACAAACGCCTTCGGGA-CATAGC
* * *
157637775 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAACGCCTTCGGGACATAGC
157637815 CCGGA
1 CCGGA
157637820 CATCATTTGA
Statistics
Matches: 139, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.90
41 11 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAACGCCTTCGGGACATAGC
Found at i:157639711 original size:13 final size:13
Alignment explanation
Indices: 157639704--157639728 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
157639694 CAAAATTAAT
157639704 AATAAAAATAAAA
1 AATAAAAATAAAA
157639717 AATAAAAATAAA
1 AATAAAAATAAA
157639729 CTTTCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:157648553 original size:28 final size:27
Alignment explanation
Indices: 157648488--157648572 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
157648478 AGGAAGCGTC
* *
157648488 CTGGTGGCTATGCCACAATTCTCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
157648515 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
157648543 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
157648569 CTGG
1 CTGG
157648573 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.10
27 31 0.60
28 16 0.31
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:157649648 original size:11 final size:10
Alignment explanation
Indices: 157649620--157649653 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
157649610 AGCCTGTAAG
157649620 TATTCTGAAT
1 TATTCTGAAT
*
157649630 TTTTCTGAAT
1 TATTCTGAAT
157649640 ATATTCTGAAT
1 -TATTCTGAAT
157649651 TAT
1 TAT
157649654 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:157657071 original size:39 final size:39
Alignment explanation
Indices: 157657036--157657265 Score: 300
Period size: 39 Copynumber: 5.9 Consensus size: 39
157657026 GTATATAGTA
* * * * * *
157657036 CCAGTACGAAGCCTGCAGACCTTAAGTCCAGATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
** *
157657075 CCAATACGAAGCCTGCGGATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
157657114 CCAGCACGAAGCCTGCGGGTCTTTAAG-CCTGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCC-GGATACAATT
* *
157657154 CCAGCATGAAGCCTGCGGACCTTAAGTCCGAATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* *
157657193 CCAGCACTAAGCCTGCGGACCTTAAGTCTGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
157657232 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
157657266 TACATCAAAT
Statistics
Matches: 166, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 132 0.80
40 34 0.20
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:157657217 original size:118 final size:118
Alignment explanation
Indices: 157657004--157657265 Score: 323
Period size: 118 Copynumber: 2.2 Consensus size: 118
157656994 CACCAACACA
* * * * *
157657004 AAGCCTACGGGACTTTAAGCCTGTATATAGTACCAGTACGAAGCCTGCAGACCTTAAGTCCAGAT
1 AAGCCTGCGGGACTTTAAGCCTGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCAGAT
* * * *
157657069 ATAGTACCAATACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
157657122 AAGCCTGCGGGTCTTTAAGCCTGGATACAATTCCAGCATGAAGCCTGCGGACCTTAAGTCC-GAA
1 AAGCCTGCGGGACTTTAAGCCTGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCAG-A
* * * *
157657186 TACAATTCCAGCACTAAGCCTGCGGACCTTAAGTCTGGATACAATTCCAGCACG
65 TACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
157657240 AAGCCTGC-GGACCTTAAGTCC-GGATA
1 AAGCCTGCGGGACTTTAAG-CCTGGATA
157657266 TACATCAAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
117 14 0.11
118 109 0.89
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (118 bp):
AAGCCTGCGGGACTTTAAGCCTGGATACAATACCAGCACGAAGCCTGCAGACCTTAAGTCCAGAT
ACAATACCAACACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:157659199 original size:40 final size:40
Alignment explanation
Indices: 157659114--157659264 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
157659104 AATTGAATGA
* * *
157659114 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
157659154 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
157659195 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
157659234 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
157659265 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:157659278 original size:40 final size:40
Alignment explanation
Indices: 157659151--157659280 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
157659141 ATGCTGGAAA
* * * *
157659151 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
157659191 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
157659231 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
157659271 TTATATCCGG
1 TTATATCCGG
157659281 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:157667113 original size:40 final size:40
Alignment explanation
Indices: 157667047--157667197 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
157667037 AAATTGAATG
* * *
157667047 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
157667086 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
157667126 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
157667166 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
157667198 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:157667211 original size:40 final size:40
Alignment explanation
Indices: 157667084--157667213 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
157667074 ATGCTGGAAA
* * * *
157667084 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
157667124 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
157667164 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
157667204 TTATATCCGG
1 TTATATCCGG
157667214 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:157672163 original size:40 final size:40
Alignment explanation
Indices: 157672020--157672186 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
157672010 CGGAATATAA
** *
157672020 CCGGATATAA-CACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
157672059 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
157672099 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
157672139 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
157672179 CCGGATAT
1 CCGGATAT
157672187 CATTCAATTT
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 11 0.11
40 90 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:157672169 original size:80 final size:80
Alignment explanation
Indices: 157672035--157672184 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
157672025 TATAACACGT
* *
157672035 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
157672100 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
157672115 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
157672178 CCCGGAT
64 CCCGGAT
157672185 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:157680046 original size:40 final size:40
Alignment explanation
Indices: 157680001--157680168 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
157679991 CGGAATATAA
157680001 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
157680041 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
157680081 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
157680121 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
157680161 CCGGATAT
1 CCGGATAT
157680169 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157680151 original size:80 final size:80
Alignment explanation
Indices: 157680017--157680166 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
157680007 ATAACCACGT
* *
157680017 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
157680082 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
157680097 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
157680160 CCCGGAT
64 CCCGGAT
157680167 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:157681844 original size:22 final size:22
Alignment explanation
Indices: 157681819--157681863 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
157681809 CATCCTGACT
157681819 AGGGTCAATTTTGGGCTGTCAC
1 AGGGTCAATTTTGGGCTGTCAC
157681841 AGGGTCAATTTTGGGCTGTCAC
1 AGGGTCAATTTTGGGCTGTCAC
157681863 A
1 A
157681864 TACCCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (22 bp):
AGGGTCAATTTTGGGCTGTCAC
Found at i:157688325 original size:48 final size:48
Alignment explanation
Indices: 157688261--157688389 Score: 240
Period size: 48 Copynumber: 2.7 Consensus size: 48
157688251 CATTAGTGTA
* *
157688261 TTCCAAACCTAAAATGTTGTAGGCTCAAAATGTGACTACCATCTTCTG
1 TTCCAAAACTAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTCTG
157688309 TTCCAAAACTAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTCTG
1 TTCCAAAACTAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTCTG
157688357 TTCCAAAACTAGAATGTTGTAGGCTCAAAATGT
1 TTCCAAAACTAGAATGTTGTAGGCTCAAAATGT
157688390 TGTAGGCAGG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (48 bp):
TTCCAAAACTAGAATGTTGTAGGCTCAAAATGTGACTACCATCTTCTG
Found at i:157690821 original size:40 final size:40
Alignment explanation
Indices: 157690727--157690951 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
157690717 TATTCGAATG
* *
157690727 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * ** *
157690768 ATAACCGGACTAAGATCCGAAGGCATTCATGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
157690808 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
157690848 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
157690888 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
157690928 ACATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
157690952 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:157690907 original size:80 final size:80
Alignment explanation
Indices: 157690727--157690987 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
157690717 TATTCGAATG
* * * *
157690727 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
157690792 ATTCATGCGAGTTGCT
65 ATTCATGCGAGTCGCT
* * * *
157690808 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
** *
157690873 TTTGTGCTAG-CGACT
66 TTCATGCGAGTCG-CT
* * * * *
157690888 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCAAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
157690953 TT-GTGCAAGTAGTT
66 TTCATGCGAGTCGCT
*
157690967 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
157690988 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCATGCGAGTCGCT
Found at i:157690941 original size:120 final size:120
Alignment explanation
Indices: 157690727--157690987 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
157690717 TATTCGAATG
* * *
157690727 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
157690792 ATTCATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGC-CTTGTGCAAG-GAGTT
* * *
157690848 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
157690911 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCAAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCAAAGGCCTTGTGCAAGGAGTT
157690967 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
157690988 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCAAAGGCCTTGTGCAAGGAGTT
Found at i:157694229 original size:45 final size:45
Alignment explanation
Indices: 157694138--157694267 Score: 212
Period size: 45 Copynumber: 3.0 Consensus size: 45
157694128 ACCCGAATTC
*
157694138 ATTT-ACCGGCATT-TCGCCTGCTAGGCTC-AAGGCCCGAATAAT
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT
* *
157694180 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGACTATT
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT
157694225 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
157694268 GTACTGTACA
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
42 4 0.05
43 9 0.11
44 14 0.17
45 54 0.67
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (45 bp):
ATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT
Found at i:157702643 original size:13 final size:13
Alignment explanation
Indices: 157702625--157702665 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
157702615 GCTTGACAGA
*
157702625 GACATGCCCCTGT
1 GACATGCCCATGT
157702638 GACATGCCCATGT
1 GACATGCCCATGT
* *
157702651 GACACGCCCGTGT
1 GACATGCCCATGT
157702664 GA
1 GA
157702666 GGTGGCTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.20
Consensus pattern (13 bp):
GACATGCCCATGT
Found at i:157702753 original size:47 final size:48
Alignment explanation
Indices: 157702651--157702762 Score: 129
Period size: 47 Copynumber: 2.3 Consensus size: 48
157702641 ATGCCCATGT
* * * *
157702651 GACACGCCCGTGTGAG-GTGGCTTAGGCCGTGTTTAGAGTCTACTAAATA
1 GACACGGCCGTGTG-GTGTGGCTTAGGCCG-GTTTAAAATCTACTAAAAA
**
157702700 GACACGGCCGTGTGGTGTGGCTTAGGCC-GTTTAAAATCTGTTAAAAA
1 GACACGGCCGTGTGGTGTGGCTTAGGCCGGTTTAAAATCTACTAAAAA
*
157702747 GACACGGGCGTGTGGT
1 GACACGGCCGTGTGGT
157702763 TTACCCGTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 29 0.53
48 1 0.02
49 25 0.45
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (48 bp):
GACACGGCCGTGTGGTGTGGCTTAGGCCGGTTTAAAATCTACTAAAAA
Found at i:157707422 original size:40 final size:40
Alignment explanation
Indices: 157707296--157707424 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
157707286 ATGCTGGAAA
* * *
157707296 TTATATCCGGGTTAAGACCTGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * **
157707336 CTACATCC-GGCTAAGACCCGAAGGCATTCATGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
157707375 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
157707415 TTATATCCGG
1 TTATATCCGG
157707425 TTGTATTCCG
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
38 3 0.04
39 27 0.38
40 41 0.58
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:157716817 original size:39 final size:40
Alignment explanation
Indices: 157716747--157716870 Score: 125
Period size: 39 Copynumber: 3.2 Consensus size: 40
157716737 CGGAATACAA
*
157716747 CCGGATA-TAACCACGT-GCACGAATGCC-TCGGGTCTTAGC
1 CCGGATAGTAACCAC-TAGAAC-AATGCCTTCGGGTCTTAGC
* *
157716786 CCGGATAG-AACGACTCGAACAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCACTAGAACAATGCCTTCGGGTCTTAGC
* * *
157716825 CCGGAT-GTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATAGTAACCACTAGAACAA-TGCCTTCGGGTCTTAGC
157716864 CCGGATA
1 CCGGATA
157716871 TATATATTTC
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
38 8 0.11
39 57 0.79
40 7 0.10
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATAGTAACCACTAGAACAATGCCTTCGGGTCTTAGC
Found at i:157723525 original size:40 final size:40
Alignment explanation
Indices: 157723470--157723720 Score: 445
Period size: 40 Copynumber: 6.3 Consensus size: 40
157723460 TATTCGAATG
157723470 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
157723510 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
157723550 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
157723589 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
157723629 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
157723669 ATATCTGGGCTAAGTCCCGAAGGC-TTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
157723708 ATATCC-GGCTAAG
1 ATATCCGGGCTAAG
157723721 ACCGCTAAAT
Statistics
Matches: 205, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
38 7 0.03
39 57 0.28
40 141 0.69
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:157723602 original size:79 final size:80
Alignment explanation
Indices: 157723470--157723720 Score: 454
Period size: 79 Copynumber: 3.2 Consensus size: 80
157723460 TATTCGAATG
157723470 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
157723535 TTTGTGCTAGTGACT
66 TTTGTGCTATTGACT
*
157723550 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
157723614 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
*
157723629 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTCCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
157723693 TTTGTGCTATTGACT
66 TTTGTGCTATTGACT
157723708 ATATCC-GGCTAAG
1 ATATCCGGGCTAAG
157723721 ACCGCTAAAT
Statistics
Matches: 166, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
78 7 0.04
79 98 0.59
80 61 0.37
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTATTGACT
Found at i:157723681 original size:119 final size:119
Alignment explanation
Indices: 157723470--157723720 Score: 461
Period size: 119 Copynumber: 2.1 Consensus size: 119
157723460 TATTCGAATG
157723470 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
157723535 TTTGTGCTAGTGACTATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTATTGACT
66 TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTATTGACT
*
157723589 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
157723654 TTTGTGCTAGTGACTATATCTGGGCTAAGTCCCGAAGGCTTTGTGCTATTGACT
66 TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTATTGACT
157723708 ATATCC-GGCTAAG
1 ATATCCGGGCTAAG
157723721 ACCGCTAAAT
Statistics
Matches: 129, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
118 7 0.05
119 114 0.88
120 8 0.06
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (119 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTATTGACT
Found at i:157731846 original size:48 final size:48
Alignment explanation
Indices: 157731777--157732097 Score: 385
Period size: 48 Copynumber: 6.7 Consensus size: 48
157731767 ATAAGGTCCC
* * *
157731777 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACCCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
* * * * * *
157731825 GTATAAGACCATATCTAGGACATGGCATCGGGATTGATGTGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
* * ** ** *
157731873 GTGTAAGACCATATCTGGGATATGGCATCGGTGTTAAAATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
* *
157731921 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
* * *
157731969 GTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTAAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
* * * *
157732017 GTGTAATAACATGTCTGGGACATGGCATCGACGC-T-GATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCG--GCATCGATATGTGAGCCA
157732065 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCA
157732098 CTGACATGAG
Statistics
Matches: 235, Mismatches: 35, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
46 2 0.01
48 230 0.98
49 1 0.00
50 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGCCA
Found at i:157732042 original size:144 final size:144
Alignment explanation
Indices: 157731777--157732142 Score: 428
Period size: 144 Copynumber: 2.5 Consensus size: 144
157731767 ATAAGGTCCC
* *
157731777 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACCCCGTATAAGACCATATCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAATGAGACCCAGTATAAGACCATATCTA
* * * * * * ** *
157731842 GGACATGGCATCGGGATTGATGTGTGAGCCAGTGTAAGACCATATCTGGGATATGGCATCGGTGT
66 GGACATGGCATCGGCATGGATATGTAAGCCAGTGTAAGAACATATCTGGGACATGGCATCGACGC
157731907 TAAAATGTGAGCCA
131 TAAAATGTGAGCCA
* * * * * *
157731921 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTCGAAATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAATGAGACCCAGTATAAGACCATATCTA
* * *
157731986 GGACATGGCATCGGCATGGATATGTAAGTCAGTGTAATAACATGTCTGGGACATGGCATCGACGC
66 GGACATGGCATCGGCATGGATATGTAAGCCAGTGTAAGAACATATCTGGGACATGGCATCGACGC
* * * *
157732051 TGATATGTGTGCTA
131 TAAAATGTGAGCCA
* **** *
157732065 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CTGACATGAGATTTTGTATAAGACCATATCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATC-GAAATGAGACCCAGTATAAGACCATATCT
* *
157732129 GGGATATGGCATCG
65 AGGACATGGCATCG
157732143 ACATTTGGAT
Statistics
Matches: 186, Mismatches: 35, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
143 1 0.01
144 185 0.99
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAAATGAGACCCAGTATAAGACCATATCTA
GGACATGGCATCGGCATGGATATGTAAGCCAGTGTAAGAACATATCTGGGACATGGCATCGACGC
TAAAATGTGAGCCA
Found at i:157732138 original size:96 final size:95
Alignment explanation
Indices: 157731777--157732144 Score: 373
Period size: 96 Copynumber: 3.8 Consensus size: 95
157731767 ATAAGGTCCC
* * *
157731777 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGACCCCGTATAAGACCATATCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGAGCCAGTATAAGACCATATCTG
* *
157731842 GGACATGGCATCGGGA-TTGATGTGTGAGCCA
66 GGACATGGCATC--GACGTGATATGTGAGCCA
* * ** ** * * * *
157731873 GTGTAAGACCATATCTGGGATATGGCATCGGTGTTAAAATGTGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGAGCCAGTATAAGACCATATCTG
* *
157731938 GGACATGGCATCGGCGTCGAAATGTGAGCCA
66 GGACATGGCATCGACGT-GATATGTGAGCCA
* * * * * *
157731969 GTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTA-AGTCAGTGTAATAACATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATG-AGAGCCAGTATAAGACCATATCT
* *
157732033 GGGACATGGCATCGACGCTGATATGTGTGCTA
65 GGGACATGGCATCGACG-TGATATGTGAGCCA
* **** *
157732065 GTGTAAGACCATGTCTGGGACATGGCATCGGCA-CTGACATGAGATTTTGTATAAGACCATATCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATC-GATATGAGAGCCAGTATAAGACCATATCT
*
157732129 GGGATATGGCATCGAC
65 GGGACATGGCATCGAC
157732145 ATTTGGATCC
Statistics
Matches: 223, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
94 1 0.00
95 2 0.01
96 219 0.98
97 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (95 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGAGCCAGTATAAGACCATATCTG
GGACATGGCATCGACGTGATATGTGAGCCA
Found at i:157738975 original size:45 final size:45
Alignment explanation
Indices: 157738925--157739011 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
157738915 CCAAAACATG
*
157738925 TGTCACATATATCACGAACTTAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
*
157738970 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTC
157739012 AGATTACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:157740461 original size:40 final size:39
Alignment explanation
Indices: 157740417--157740563 Score: 161
Period size: 40 Copynumber: 3.6 Consensus size: 39
157740407 TTGTTGACAA
* * *
157740417 TTCGGCTATGTATGGCACTTAGTGAGCGATTCAAGATAGC
1 TTCGACTATATATGGCACTTAGTGTGCGATTCAA-ATAGC
* * *
157740457 TTCGGCTATATATAGCACTCAGTGTGCGATTCGAAATAGC
1 TTCGACTATATATGGCACTTAGTGTGCGATTC-AAATAGC
157740497 TTCGACTATATATGGCACTTAGTGTGCGAGATT-ATAATAGC
1 TTCGACTATATATGGCACTTAGTGTGC--GATTCA-AATAGC
* *
157740538 TTCAACTATGTATTGGCACTTAGTGT
1 TTCGACTATATA-TGGCACTTAGTGT
157740564 ACGAGTTATC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
40 58 0.62
41 18 0.19
42 17 0.18
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (39 bp):
TTCGACTATATATGGCACTTAGTGTGCGATTCAAATAGC
Found at i:157746058 original size:40 final size:39
Alignment explanation
Indices: 157745968--157746146 Score: 157
Period size: 39 Copynumber: 4.5 Consensus size: 39
157745958 AATCAAGCAT
** ** * * *
157745968 CTTCGGGGTTTAGCCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
* * * * *
157746006 CTTCAGGTCTTAGACCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAG-CCGGATATAGTCGCTAGCACAAATGC
157746046 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
* * *
157746085 CTTC-GGATCTTAGTCAGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAG-CCGGATATAGTCGC-TAGCACAAATGC
157746126 CTTCGGGAC-TAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
157746147 CATTCGAGTA
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 13 0.11
39 47 0.41
40 36 0.31
41 16 0.14
42 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
Found at i:157746063 original size:39 final size:40
Alignment explanation
Indices: 157746004--157746146 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
157745994 CTCGCACAAG
* * * * *
157746004 GCCTTCAGGTCTTAGACCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGACCGGATATAGTCGCTAGCACAAAT
157746044 GCCTTCGGGACTTAG-CCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGACCGGATATAGTCGCTAGCACAAAT
* * * *
157746083 GCCTTC-GGATCTTAGTCAGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGACCGGATATAGTCGC-TAGCACAAAT
*
157746124 GCCTTCGGGAC-TAGCCCGGATAT
1 GCCTTCGGGACTTAGACCGGATAT
157746147 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
38 3 0.03
39 32 0.36
40 34 0.39
41 16 0.18
42 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGACCGGATATAGTCGCTAGCACAAAT
Found at i:157755077 original size:29 final size:29
Alignment explanation
Indices: 157755043--157755203 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
157755033 TACTCGATTT
** * *
157755043 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
157755072 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
157755101 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
157755130 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
157755159 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
157755188 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
157755204 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:157762555 original size:29 final size:29
Alignment explanation
Indices: 157762520--157762679 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
157762510 TATATTAATT
** * *
157762520 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
*** * *
157762549 CGCACAC-TAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
157762577 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
157762606 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
157762635 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
157762664 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
157762680 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 2 0.02
28 19 0.16
29 95 0.82
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:157765977 original size:39 final size:40
Alignment explanation
Indices: 157765901--157766079 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 40
157765891 TGTCCGGGCT
* * * *
157765901 AAGTCCCGAAGGC-TTTGTGCTAAGTGA-CTAAATCGGGTC
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTC
* *
157765940 AA-TCCCGAAGGCATTTGTGCTAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
*
157765979 AAGT-CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
** *
157766018 AAGTCCCGAAGGCA-TTGTGCGAGTTATTAAATCCGGG-C
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * *
157766056 TAATTCCCGAAGGCAATTATGCGA
1 -AAGTCCCGAAGGCATTTGTGCGA
157766080 ATCACTATAA
Statistics
Matches: 122, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
38 14 0.11
39 91 0.75
40 17 0.14
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
Found at i:157766092 original size:79 final size:78
Alignment explanation
Indices: 157765893--157766094 Score: 212
Period size: 78 Copynumber: 2.6 Consensus size: 78
157765883 TCGAATGGTG
* * *
157765893 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCGGGTCAATCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAACCGGGTCAATCCCGAAGGCATTTG
*
157765957 TGCTAGTTACCAAA
65 TGCGAGTTACCAAA
* * * * * *
157765971 ACCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA-TT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTCAA-TCCCGAAGGCATTT
**
157766034 GTGCGAGTTATTAAA
64 GTGCGAGTTACCAAA
* * *
157766049 TCCGGGCTAATTCCCGAAGGCAATTATGCGAATCACTATAACCGGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGG
157766095 CTATGTCCGA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
77 10 0.10
78 54 0.54
79 36 0.36
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTCAATCCCGAAGGCATTTGT
GCGAGTTACCAAA
Found at i:157766105 original size:39 final size:39
Alignment explanation
Indices: 157765894--157766120 Score: 178
Period size: 39 Copynumber: 5.8 Consensus size: 39
157765884 CGAATGGTGT
* * *
157765894 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * * *
157765933 TCGGG-TCAA-TCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * *
157765972 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* *
157766011 CCGGGTTAAGTCCCGAAGGC-ATTGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
* * * *
157766049 TCCGGGCTAATTCCCGAAGGCAATTATGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * * *
157766090 CCGGGCTATGT-CCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
157766121 CGCTATATCC
Statistics
Matches: 157, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
38 18 0.11
39 106 0.68
40 31 0.20
41 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:157774121 original size:80 final size:79
Alignment explanation
Indices: 157773983--157774172 Score: 218
Period size: 80 Copynumber: 2.4 Consensus size: 79
157773973 CGAATGGTGT
* * * * * *
157773983 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGCCCGAAGGCATTCG
157774048 TGCAAGTTACCAAAA
65 TGCAAGTTACCAAAA
* * * *
157774063 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACTGGGTTAAGCCCTGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGCCC-GAAGGCATTCG
* ** *
157774128 TGCGAGTTATTAAAT
65 TGCAAGTTACCAAAA
* *
157774143 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
157774173 ATCACTATAA
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 18 0.20
80 74 0.80
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGCCCGAAGGCATTCGT
GCAAGTTACCAAAA
Found at i:157774171 original size:40 final size:39
Alignment explanation
Indices: 157773982--157774172 Score: 186
Period size: 40 Copynumber: 4.8 Consensus size: 39
157773972 TCGAATGGTG
* * * *
157773982 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAA-TCCCGAAGGCATTTGTGC-GAGTTACCAAA
*
157774023 TCCGGG-TCAATCCCGAAGGCATTTGTGCAAGTTACCAAA
1 TCCGGGCT-AATCCCGAAGGCATTTGTGCGAGTTACCAAA
* *
157774062 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCTAA-TCCCGAAGGCATTTGTGCGAGTTACCAAA
* * * * * **
157774102 ACTGGGTTAAGCCCTGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAATCCC-GAAGGCATTTGTGCGAGTTACCAAA
*
157774142 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGCTAA-TCCCGAAGGCATTTGTGCGA
157774173 ATCACTATAA
Statistics
Matches: 129, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 19 0.15
40 99 0.77
41 11 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAATCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:157774187 original size:40 final size:38
Alignment explanation
Indices: 157773983--157774205 Score: 137
Period size: 40 Copynumber: 5.6 Consensus size: 38
157773973 CGAATGGTGT
** * *
157773983 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAA-TCCCGAAGGCAATTGTGCGAA-TTACTAAA
* *
157774023 TCCGGG-TCAATCCCGAAGGCATTTGTGC-AAGTTACCAAAA
1 -CCGGGCT-AATCCCGAAGGCAATTGTGCGAA-TTA-CTAAA
* * * *
157774063 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAA-TCCCGAAGGCAATTGTGCGAATTA-CTAAA
* * * * *
157774103 CTGGGTTAAGCCCTGAAGGC-ATTCGTGCGAGTTATTAAA
1 CCGGGCTAATCCC-GAAGGCAATT-GTGCGAATTACTAAA
*
157774142 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAA-TCCCGAAGGCAATTGTGCGAATTACTA-AA
* *
157774183 CCGGGCTATGTCCCGAAGACAAT
1 CCGGGCTA-ATCCCGAAGGCAAT
157774206 CGAGCGAGTC
Statistics
Matches: 153, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
39 20 0.13
40 117 0.76
41 16 0.10
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (38 bp):
CCGGGCTAATCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:157774221 original size:40 final size:40
Alignment explanation
Indices: 157774143--157774226 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
157774133 GTTATTAAAT
* * *
157774143 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
157774183 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
157774223 CCGG
1 CCGG
157774227 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:157779179 original size:49 final size:49
Alignment explanation
Indices: 157779109--157779458 Score: 577
Period size: 49 Copynumber: 7.3 Consensus size: 49
157779099 TACATGATAG
157779109 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
157779158 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
157779207 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
157779256 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
157779305 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
157779352 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * *
157779399 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
157779448 -A-ATGTGATAAG
1 TATATGTGATAAG
157779459 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 97 0.33
48 1 0.00
49 192 0.66
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:157797038 original size:11 final size:11
Alignment explanation
Indices: 157797022--157797053 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
157797012 TTACCAAGAC
157797022 CATAAGCTTAG
1 CATAAGCTTAG
157797033 CATAAGCTTAG
1 CATAAGCTTAG
*
157797044 CATAGGCTTA
1 CATAAGCTTA
157797054 TACAAGCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (11 bp):
CATAAGCTTAG
Found at i:157807521 original size:16 final size:16
Alignment explanation
Indices: 157807500--157807530 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
157807490 ATTAGTAGAC
*
157807500 CTTAATTTTTTATAAT
1 CTTAATTTTTAATAAT
157807516 CTTAATTTTTAATAA
1 CTTAATTTTTAATAA
157807531 ATAGTTAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
CTTAATTTTTAATAAT
Found at i:157813419 original size:40 final size:40
Alignment explanation
Indices: 157813374--157813541 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
157813364 CGGAATATAA
157813374 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
157813414 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
157813454 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
157813494 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
157813534 CCGGATAT
1 CCGGATAT
157813542 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157813524 original size:80 final size:80
Alignment explanation
Indices: 157813390--157813539 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
157813380 ATAACCACGT
* *
157813390 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
157813455 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
157813470 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
157813533 CCCGGAT
64 CCCGGAT
157813540 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:157821424 original size:40 final size:40
Alignment explanation
Indices: 157821379--157821546 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
157821369 CGGAATATAA
157821379 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
157821419 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
157821459 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
157821499 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
157821539 CCGGATAT
1 CCGGATAT
157821547 CATTCAATCT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:157821529 original size:80 final size:80
Alignment explanation
Indices: 157821395--157821544 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
157821385 ATAACCACGT
* *
157821395 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
157821460 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
157821475 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
157821538 CCCGGAT
64 CCCGGAT
157821545 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:157831806 original size:28 final size:28
Alignment explanation
Indices: 157831758--157831848 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
157831748 GTGACAGAGT
*
157831758 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
157831787 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
157831815 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
157831843 CACCAG
1 CACCAG
157831849 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:157832001 original size:28 final size:28
Alignment explanation
Indices: 157831954--157832018 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
157831944 AAATTAACCC
*
157831954 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
157831982 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
157832010 TAGGGGTAT
1 TAGGGGTAT
157832019 TAGTAATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:157839622 original size:28 final size:29
Alignment explanation
Indices: 157839549--157839636 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
157839539 AGCATGGCTG
* * * *
157839549 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
157839576 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
157839605 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
157839633 CCAG
1 CCAG
157839637 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:157839789 original size:28 final size:27
Alignment explanation
Indices: 157839744--157839808 Score: 103
Period size: 28 Copynumber: 2.4 Consensus size: 27
157839734 ATTAACCCTA
* *
157839744 AGGGTATAAAGGTCATTTTGCATACAT
1 AGGGTATAATGGTAATTTTGCATACAT
157839771 AGGGGTATAATGGTAATTTTGCATACAT
1 A-GGGTATAATGGTAATTTTGCATACAT
157839799 AGGGTATAAT
1 AGGGTATAAT
157839809 AGTATATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 10 0.29
28 25 0.71
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.34
Consensus pattern (27 bp):
AGGGTATAATGGTAATTTTGCATACAT
Found at i:157843662 original size:29 final size:27
Alignment explanation
Indices: 157843609--157843682 Score: 94
Period size: 28 Copynumber: 2.7 Consensus size: 27
157843599 TATGGCCAAC
**
157843609 TAGGCCCAATCACATTTATGTGGCCCAT
1 TAGGCCCAATCACATTTATACGG-CCAT
157843637 TAGGCCCAAATCACATTTATACGGCCAT
1 TAGGCCC-AATCACATTTATACGGCCAT
**
157843665 TAGGCTGAATCACATTTA
1 TAGGCCCAATCACATTTA
157843683 CCGTCATGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 11 0.27
28 16 0.39
29 14 0.34
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
TAGGCCCAATCACATTTATACGGCCAT
Found at i:157845632 original size:20 final size:20
Alignment explanation
Indices: 157845607--157845665 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
157845597 TAATTTGTGT
157845607 ACAAGCCACCAGTAATGCAG
1 ACAAGCCACCAGTAATGCAG
** * **
157845627 ACAAGCTTCTAGTAATGTGG
1 ACAAGCCACCAGTAATGCAG
**
157845647 TTAAGCCACCAGTAATGCA
1 ACAAGCCACCAGTAATGCA
157845666 AATAAACTGC
Statistics
Matches: 27, Mismatches: 12, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ACAAGCCACCAGTAATGCAG
Found at i:157845721 original size:60 final size:60
Alignment explanation
Indices: 157845654--157845780 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
157845644 TGGTTAAGCC
* * * ** *
157845654 ACCAGTAATGCAAATAAACTGCCAGTAGTGTAGG-CAAGCTGCCAATATTGTAGATAAACT
1 ACCAGTAATACAAACAAACTGCCAGTAATGT-GGTCAAGCCACCAATAATGTAGATAAACT
* * *
157845714 GCCAGTAATACAAACAAACTGCTAGTAATGTGGTCAAGCCACCAGTAATGTAGATAAACT
1 ACCAGTAATACAAACAAACTGCCAGTAATGTGGTCAAGCCACCAATAATGTAGATAAACT
157845774 ACCAGTA
1 ACCAGTA
157845781 CTTCCTCCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 2 0.04
60 54 0.96
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (60 bp):
ACCAGTAATACAAACAAACTGCCAGTAATGTGGTCAAGCCACCAATAATGTAGATAAACT
Found at i:157845777 original size:20 final size:20
Alignment explanation
Indices: 157845655--157845780 Score: 74
Period size: 20 Copynumber: 6.3 Consensus size: 20
157845645 GGTTAAGCCA
* *
157845655 CCAGTAATGCAAATAAACTG
1 CCAGTAATGTAGATAAACTG
* ** *
157845675 CCAGTAGTGTAGGCAAGCTG
1 CCAGTAATGTAGATAAACTG
* *
157845695 CCAATATTGTAGATAAACTG
1 CCAGTAATGTAGATAAACTG
** * *
157845715 CCAGTAATACAAACAAACTG
1 CCAGTAATGTAGATAAACTG
* * * **
157845735 CTAGTAATGT-GGTCAAGCCA
1 CCAGTAATGTAGAT-AAACTG
*
157845755 CCAGTAATGTAGATAAACTA
1 CCAGTAATGTAGATAAACTG
157845775 CCAGTA
1 CCAGTA
157845781 CTTCCTCCTT
Statistics
Matches: 74, Mismatches: 30, Indels: 4
0.69 0.28 0.04
Matches are distributed among these distances:
20 72 0.97
21 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (20 bp):
CCAGTAATGTAGATAAACTG
Found at i:157846031 original size:15 final size:15
Alignment explanation
Indices: 157845999--157846027 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
157845989 ATATTCTGTG
157845999 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
157846014 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
157846028 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:157847217 original size:43 final size:41
Alignment explanation
Indices: 157847170--157847262 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 41
157847160 TGTGTTCTCA
* ** *
157847170 TGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTAGGACATCGGCATCG-TATGTGATT-CG
* *
157847213 TGTAAGACCATGTCTAGGACATCGGCATCGTATTTGATTCG
1 TGTAAGACCACGTCTAGGACATCGGCATCGTATGTGATTCG
157847254 TGTAAGACC
1 TGTAAGACC
157847263 CTATTTAGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
41 11 0.25
42 8 0.18
43 25 0.57
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTAGGACATCGGCATCGTATGTGATTCG
Found at i:157847272 original size:41 final size:43
Alignment explanation
Indices: 157847193--157847274 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 43
157847183 CTGGGATGTT
*
157847193 GGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGACATC
1 GGCATCGATATGTGATTACGTGTAAGACCATATCTAGGACATC
* * *
157847236 GGCATCG-TATTTGATT-CGTGTAAGACCCTATTTAGGACA
1 GGCATCGATATGTGATTACGTGTAAGACCATATCTAGGACA
157847275 GTGACATCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 20 0.57
42 8 0.23
43 7 0.20
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
GGCATCGATATGTGATTACGTGTAAGACCATATCTAGGACATC
Found at i:157849510 original size:27 final size:28
Alignment explanation
Indices: 157849453--157849522 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
157849443 AAACTTGTAC
*
157849453 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
157849481 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
157849508 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
157849523 GACACACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:157857436 original size:27 final size:28
Alignment explanation
Indices: 157857379--157857448 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
157857369 AAACTTGTAC
*
157857379 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
157857407 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
157857434 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
157857449 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:157857459 original size:27 final size:27
Alignment explanation
Indices: 157857379--157857460 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
157857369 AAACTTGTAC
* * *
157857379 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
157857407 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
157857434 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
157857461 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:157862623 original size:39 final size:39
Alignment explanation
Indices: 157862580--157862711 Score: 228
Period size: 39 Copynumber: 3.4 Consensus size: 39
157862570 GGTCTTTAAC
* ** *
157862580 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
157862619 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
157862658 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
157862697 CCGGATATATTTCCA
1 CCGGATATATTTCCA
157862712 ATCTCATATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:157863859 original size:2 final size:2
Alignment explanation
Indices: 157863852--157863909 Score: 64
Period size: 2 Copynumber: 29.0 Consensus size: 2
157863842 ACATCAAATC
* * *
157863852 TA TA TA TA TA TA TA TA TA TA TA GTC GA -A TA TA TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
157863894 TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA
157863910 GCTCATCAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
1 1 0.02
2 45 0.96
3 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:157870602 original size:39 final size:39
Alignment explanation
Indices: 157870559--157870687 Score: 204
Period size: 39 Copynumber: 3.3 Consensus size: 39
157870549 CTTTAACCCT
* ** * *
157870559 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCTG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
157870598 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
*
157870637 GATATATTTTCAGCATATAGCCTGCGGACCTCATGTCCG
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
157870676 GATATATTTCCA
1 GATATATTTCCA
157870688 ATCTCATATA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (39 bp):
GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
Found at i:157871838 original size:2 final size:2
Alignment explanation
Indices: 157871831--157871894 Score: 69
Period size: 2 Copynumber: 33.0 Consensus size: 2
157871821 ACATCAAATC
** *
157871831 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A CC GA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
157871871 TA TA TA CA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
157871895 GCTCATCAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:157874750 original size:48 final size:48
Alignment explanation
Indices: 157874679--157875726 Score: 1618
Period size: 48 Copynumber: 22.1 Consensus size: 48
157874669 ACAGCTTGCG
*
157874679 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157874727 GTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * *
157874775 GTGAAATATATGTGTGATATGTATATGTGATAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * *
157874823 GTGAAATATATGTGTGATATGTATA--T-GT---------TGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157874859 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
157874907 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * *
157874955 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157875003 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
157875051 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * * * *
157875099 GTGAAATATATGTGTGATATGTAGACGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
157875147 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
157875195 GTGAAATATATATGAGATATGTATATGTGGTAAAG-CGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * * *
157875242 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
157875290 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157875338 GTGAAATATATATGTGATATGTATATGTGGTAAAGACGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
157875386 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * * *
157875434 GTGAAATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* **
157875482 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCTAAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
157875530 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157875578 GTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157875626 GTGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
157875674 GTGAAATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
157875722 GTGAA
1 GTGAA
157875727 TGTTGTAACA
Statistics
Matches: 917, Mismatches: 70, Indels: 26
0.91 0.07 0.03
Matches are distributed among these distances:
36 29 0.03
38 1 0.00
39 2 0.00
45 1 0.00
46 1 0.00
47 45 0.05
48 838 0.91
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
GTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
Found at i:157874863 original size:36 final size:36
Alignment explanation
Indices: 157874815--157874886 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
157874805 TAAAGCCGAA
* * *
157874815 TGGCTAATGTGAAATATATGTGTGATATGTATATGT
1 TGGCGAATGTGAAATATATATGAGATATGTATATGT
*
157874851 TGGCGAATGTGAAATATGTATGAGATATGTATATGT
1 TGGCGAATGTGAAATATATATGAGATATGTATATGT
157874887 GGTAAAGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (36 bp):
TGGCGAATGTGAAATATATATGAGATATGTATATGT
Found at i:157875821 original size:37 final size:37
Alignment explanation
Indices: 157875771--157875915 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
157875761 GGAAATATAT
*
157875771 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
157875808 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
157875845 TCCGGGTAAGACCCAATGACTACGTGTGAAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
157875882 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
157875916 TCGTCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:157880426 original size:7 final size:7
Alignment explanation
Indices: 157880414--157880471 Score: 62
Period size: 7 Copynumber: 8.3 Consensus size: 7
157880404 CATGTTTCAC
157880414 CCCTAAA
1 CCCTAAA
157880421 CCCTAAA
1 CCCTAAA
*
157880428 CCTTAAA
1 CCCTAAA
*
157880435 CCTTAAA
1 CCCTAAA
* *
157880442 CCTTAAT
1 CCCTAAA
*
157880449 CTCTAAA
1 CCCTAAA
157880456 CCCTAAA
1 CCCTAAA
*
157880463 GCCTAAA
1 CCCTAAA
157880470 CC
1 CC
157880472 TATTGACTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.40, C:0.36, G:0.02, T:0.22
Consensus pattern (7 bp):
CCCTAAA
Found at i:157884580 original size:42 final size:42
Alignment explanation
Indices: 157884466--157884631 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 42
157884456 GAAAAACTAG
* * *
157884466 TACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
* * * * * * *
157884508 TATCGATGCCACTATCCCAGACAAGATCTTACACGAAATTATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
* *
157884551 TACAATGCAAATGTCCCAAACATGGTCTTACACGTAAATCTCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAA
* ** * *
157884596 T-CGATGCCAACATCCTAGACGTGGTCTTACACGAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGAAA
157884632 ACACATCTCT
Statistics
Matches: 94, Mismatches: 26, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
42 27 0.29
43 38 0.40
44 25 0.27
45 4 0.04
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAA
Found at i:157893587 original size:28 final size:27
Alignment explanation
Indices: 157893524--157893593 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
157893514 ATAGTGAGTC
157893524 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
157893551 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
157893579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
157893594 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:157901617 original size:28 final size:27
Alignment explanation
Indices: 157901554--157901623 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
157901544 ATAGTGAGTC
157901554 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
157901581 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
157901609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
157901624 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:157915513 original size:25 final size:24
Alignment explanation
Indices: 157915481--157915566 Score: 104
Period size: 24 Copynumber: 3.5 Consensus size: 24
157915471 TGAAAGTCCA
157915481 CACACATAGTGCTCTTAC-TTAT-TCG
1 CACACATAGTGC-C--ACGTTATCTCG
*
157915506 CACACATAGTGCCACGTTTTCTCG
1 CACACATAGTGCCACGTTATCTCG
* *
157915530 CACACATAGTGCCATGTAATCTCG
1 CACACATAGTGCCACGTTATCTCG
157915554 CACACATAGTGCC
1 CACACATAGTGCC
157915567 GCATAGCCTT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
22 2 0.04
23 3 0.05
24 38 0.69
25 12 0.22
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (24 bp):
CACACATAGTGCCACGTTATCTCG
Found at i:157918453 original size:78 final size:81
Alignment explanation
Indices: 157918341--157918518 Score: 231
Period size: 78 Copynumber: 2.2 Consensus size: 81
157918331 CGTTCAAATA
* *
157918341 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTT
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATTT
* * *
157918404 AATAAC-TCGCACCATG
65 AATAACTTAGCACAAAG
**
157918420 CCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTA
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTA
* *
157918483 GTCACTTAGCACAAAG
66 ATAACTTAGCACAAAG
157918499 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
157918519 CATCATTCGA
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.56
79 24 0.28
80 11 0.13
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTA
ATAACTTAGCACAAAG
Found at i:157918478 original size:40 final size:40
Alignment explanation
Indices: 157918335--157918518 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
157918325 GCTACTCGTT
* *
157918335 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
157918375 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
157918415 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
157918453 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
157918494 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
157918519 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 67 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:157924012 original size:40 final size:40
Alignment explanation
Indices: 157923949--157924410 Score: 342
Period size: 40 Copynumber: 11.6 Consensus size: 40
157923939 AATTATTGTT
* * * * *
157923949 TGAATGCACATACATGCCCCTATTTGGACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * *
157923989 TGAATGCACATACGTTCCTCTATTTGTACTTCGGTACTCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * *
157924029 TG-AGGTCACATACGTACCCCTATTTGTACTTCGATACTCC
1 TGAATG-CACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * *
157924069 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * ** *
157924109 TGAATGCACATATGTGCCCCTATTTGTACTTCAGTGTTCA
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * *
157924149 TGAATACACATACGTGCCCCTGTTTGTACTTTGGTAGTGC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * ** *
157924189 TAAATGCATATAAGTGCCTTTG-TT-TACTTTGGTACTCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * * * *
157924227 TAAATGGACATACATGCCTCTGTTTGTACTTCGGTACTCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* ** * *
157924267 TGAATGCACATATGTGCGTCT-TCTTGTACTTCAGTACCCC
1 TGAATGCACATACGTGCCCCTGT-TTGTACTTCGGTACTCC
* ** *
157924307 TGAATGCACATATGTGCCCCTGTTTG-AGCTTTAGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTA-CTTCGGTACTCC
** * ** * * *
157924347 TGAATGCTTATACATGCCTTTGTTTGTACTTCGATTCCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
* * *
157924387 TAAATGCACAT-TGTGCCCTTGTTT
1 TGAATGCACATACGTGCCCCTGTTT
157924411 ATTCTTTGGT
Statistics
Matches: 335, Mismatches: 79, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
38 29 0.09
39 18 0.05
40 284 0.85
41 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
Found at i:157924162 original size:120 final size:118
Alignment explanation
Indices: 157923949--157924379 Score: 422
Period size: 120 Copynumber: 3.6 Consensus size: 118
157923939 AATTATTGTT
* * *
157923949 TGAATGCACATACATGCCCCTATTTGGACTTTGGTACCCCTGAATGCACATACGTTCCTCTATTT
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATACGTGCCTCTATTT
* *
157924014 GTACTTCGGTACTCTTGAGGTCACATACGTACCCCTATTTGTACTTCGATACTCC
66 GTACTTCGGTACTCTTGA-ATCACATACGTGCCCCT-TTTGTACTTCGATACTCC
* *
157924069 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATATGTGCCCCTATTT
1 TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATACGTGCCTCTATTT
* ** * * * * *
157924134 GTACTTCAGTGTTCATGAATACACATACGTGCCCCTGTTTGTACTTTGGTAGTGC
66 GTACTTCGGTACTCTTGAAT-CACATACGTGCCCCT-TTTGTACTTCGATACTCC
* * ** * * * * *
157924189 TAAATGCATATA-AGTGCCTTTG-TT-TACTTTGGTACTCCTAAATGGACATACATGCCTCTGTT
1 TGAATGCACATACA-TGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATACGTGCCTCTATT
* ** *
157924251 TGTACTTCGGTACTCTTGAATGCACATATGTGCGTCTTCTTGTACTTC-AGTACCCC
65 TGTACTTCGGTACTCTTGAAT-CACATACGTGCCCCTT-TTGTACTTCGA-TACTCC
** * ** * * *
157924307 TGAATGCACATATGTGCCCCTGTTTG-AGCTTTAGTACCCCTGAATGCTTATACATGCCTTTGTT
1 TGAATGCACATACATGCCCCTGTTTGTA-CTTTGGTACCCCTGAATGCACATACGTGCCTCTATT
157924371 TGTACTTCG
65 TGTACTTCG
157924380 ATTCCCCTAA
Statistics
Matches: 251, Mismatches: 52, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
117 1 0.00
118 87 0.35
119 7 0.03
120 156 0.62
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (118 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATACGTGCCTCTATTT
GTACTTCGGTACTCTTGAATCACATACGTGCCCCTTTTGTACTTCGATACTCC
Found at i:157924353 original size:158 final size:158
Alignment explanation
Indices: 157924063--157924371 Score: 390
Period size: 158 Copynumber: 2.0 Consensus size: 158
157924053 TGTACTTCGA
* *
157924063 TACTCCTGAATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATATGTGCCC
1 TACTCCTAAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATATGTGCCC
*** * ***
157924128 CTATTTGTACTTCAGTGTTCATGAATACACATACGTGCCCCTGTTTGTACTTTGGTAGTGCTAAA
66 CTATTTGTACTTCAGTACCCATGAATACACATACGTGCCCCTGTTTGTACTTTAGTACCCCTAAA
157924193 TGCATATA-AGTGCCTTTGTTTACTTTGG
131 TGCATATACA-TGCCTTTGTTTACTTTGG
* * * * **
157924221 TACTCCTAAATGGACATACATGCCTCTGTTTGTACTTCGGTACTCTTGAATGCACATATGTGCGT
1 TACTCCTAAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATATGTGCCC
* * * *
157924286 CT-TCTTGTACTTCAGTACCCCTGAATGCACATATGTGCCCCTGTTTG-AGCTTTAGTACCCCTG
66 CTAT-TTGTACTTCAGTACCCATGAATACACATACGTGCCCCTGTTTGTA-CTTTAGTACCCCTA
*
157924349 AATGCTTATACATGCCTTTGTTT
129 AATGCATATACATGCCTTTGTTT
157924372 GTACTTCGAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.02
158 125 0.98
159 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (158 bp):
TACTCCTAAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTGAATGCACATATGTGCCC
CTATTTGTACTTCAGTACCCATGAATACACATACGTGCCCCTGTTTGTACTTTAGTACCCCTAAA
TGCATATACATGCCTTTGTTTACTTTGG
Found at i:157926643 original size:40 final size:40
Alignment explanation
Indices: 157926588--157926811 Score: 263
Period size: 40 Copynumber: 5.5 Consensus size: 40
157926578 TATTCGGATG
*
157926588 ATATCCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
157926628 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
157926671 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
157926711 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
157926751 ATATCTGGGCTAAGAT-CTGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACT
* *
157926791 ATATCC-GGCTAAATCCAGAAG
1 ATATCCGGGCTAAGTCCCGAAG
157926812 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 11 0.07
40 109 0.68
41 2 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:157926731 original size:83 final size:80
Alignment explanation
Indices: 157926592--157926811 Score: 259
Period size: 83 Copynumber: 2.7 Consensus size: 80
157926582 CGGATGATAT
* * **
157926592 CCGGGCTAAGTCCCGAGGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
157926657 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
157926675 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
157926740 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * * *
157926755 CTGGGCTAAGAT-CTGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCAGAAG
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
157926812 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.12
80 42 0.34
81 3 0.02
83 63 0.51
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:157934490 original size:30 final size:30
Alignment explanation
Indices: 157934456--157934516 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
157934446 TCCTTAACTC
157934456 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
157934486 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
157934516 A
1 A
157934517 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:157940961 original size:40 final size:40
Alignment explanation
Indices: 157940917--157941255 Score: 320
Period size: 40 Copynumber: 8.5 Consensus size: 40
157940907 TTACTATCTA
* * * *
157940917 AATGCACATACGTGCCCATGTTCGGACTTCAGTACCCCTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * *
157940957 AATGCACATATGTGCCCCTATTTGTACTTCGGTACTCCTA
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * **
157940997 AATGCACATACGTGTCCCTATTTGTACTTCGATACCTTTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * *
157941037 AATGCACATACGTGCCTCTGTTCGTACTTCGGAACTCCT-
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* * * * * *
157941076 AAGTGCACATACGTGCCCCTATTTGTAATTTGGTGCTCTTG
1 AA-TGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* **** *
157941117 AATGCACATATGTAATGCTGTTTGTACTTTGGTACCCCTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
** ** *
157941157 AATGCACATTTGTGCCCCTGTTTGTACTTTTGTACACCTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
* *
157941197 AATGCACATACATGCCCCTGTTTGTACTTTGGTACCCCTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
**
157941237 AATGCACATGTGTGCCCCT
1 AATGCACATACGTGCCCCT
157941256 ATTTATTCTT
Statistics
Matches: 240, Mismatches: 57, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
39 2 0.01
40 236 0.98
41 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTG
Found at i:157941176 original size:20 final size:20
Alignment explanation
Indices: 157941151--157941255 Score: 68
Period size: 20 Copynumber: 5.2 Consensus size: 20
157941141 TACTTTGGTA
157941151 CCCCTGAATGCACATTTGTG
1 CCCCTGAATGCACATTTGTG
** * * *
157941171 CCCCTGTTTGTACTTTTGTA
1 CCCCTGAATGCACATTTGTG
* ***
157941191 CACCTGAATGCACATACATG
1 CCCCTGAATGCACATTTGTG
** * *
157941211 CCCCTGTTTGTAC-TTTGGTA
1 CCCCTGAATGCACATTT-GTG
*
157941231 CCCCTGAATGCACATGTGTG
1 CCCCTGAATGCACATTTGTG
157941251 CCCCT
1 CCCCT
157941256 ATTTATTCTT
Statistics
Matches: 56, Mismatches: 27, Indels: 4
0.64 0.31 0.05
Matches are distributed among these distances:
19 1 0.02
20 53 0.95
21 2 0.04
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.33
Consensus pattern (20 bp):
CCCCTGAATGCACATTTGTG
Found at i:157941267 original size:120 final size:120
Alignment explanation
Indices: 157940917--157941275 Score: 378
Period size: 120 Copynumber: 3.0 Consensus size: 120
157940907 TTACTATCTA
* * * * *
157940917 AATGCACATACGTGCCCATGTTCGGACTTCAGTACCCCTGAATGCACATATGTGCCCCTATTTGT
1 AATGCACATACGTGCCCCTGTTCGTACTTCGGTACACCTGAATGCACATACGTGCCCCTATTTGT
* * * * * * **
157940982 ACTTCGGTACTCCTAAATGCACATACGTGTCCCTATTTGTACTTCGATACCTTTG
66 ACTTTGGTACTCCTGAATGCACATATGTGACCCTATTTGTACTTTGGTACCCCTG
* * *
157941037 AATGCACATACGTGCCTCTGTTCGTACTTCGGAACTCCT-AAGTGCACATACGTGCCCCTATTTG
1 AATGCACATACGTGCCCCTGTTCGTACTTCGGTACACCTGAA-TGCACATACGTGCCCCTATTTG
* * * * ** *
157941101 TAATTTGGTGCTCTTGAATGCACATATGTAATGCTGTTTGTACTTTGGTACCCCTG
65 TACTTTGGTACTCCTGAATGCACATATGTGACCCTATTTGTACTTTGGTACCCCTG
** * ** * *
157941157 AATGCACATTTGTGCCCCTGTTTGTACTTTTGTACACCTGAATGCACATACATGCCCCTGTTTGT
1 AATGCACATACGTGCCCCTGTTCGTACTTCGGTACACCTGAATGCACATACGTGCCCCTATTTGT
* * * * * *
157941222 ACTTTGGTACCCCTGAATGCACATGTGTGCCCCTATTTATTCTTTGGTAACCCT
66 ACTTTGGTACTCCTGAATGCACATATGTGACCCTATTTGTACTTTGGTACCCCT
157941276 AAATTAAATA
Statistics
Matches: 192, Mismatches: 45, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
119 2 0.01
120 188 0.98
121 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (120 bp):
AATGCACATACGTGCCCCTGTTCGTACTTCGGTACACCTGAATGCACATACGTGCCCCTATTTGT
ACTTTGGTACTCCTGAATGCACATATGTGACCCTATTTGTACTTTGGTACCCCTG
Found at i:157948258 original size:40 final size:40
Alignment explanation
Indices: 157948134--157948260 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
157948124 GCTGGAAATT
* * * *
157948134 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
* * ** *
157948174 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
157948214 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTTA
157948254 TATCCGG
1 TATCCGG
157948261 TTATATTCCG
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTA
Found at i:157960488 original size:40 final size:40
Alignment explanation
Indices: 157960443--157960572 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
157960433 CGGAATACAA
157960443 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
157960483 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
157960523 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
157960563 CCGGATATAA
1 CCGGATATAA
157960573 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:157960587 original size:40 final size:40
Alignment explanation
Indices: 157960443--157960606 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
157960433 CGGAATACAA
* **
157960443 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
157960483 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
157960523 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
157960563 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
157960603 CCGG
1 CCGG
157960607 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:157963822 original size:30 final size:31
Alignment explanation
Indices: 157963786--157963843 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
157963776 TTTCTGAGCC
157963786 TAGGGGC-AAAATCGTAATTCTG-CAAAGGTT
1 TAGGGGCAAAAAT-GTAATTCTGCCAAAGGTT
*
157963816 TAGGGGCAAAAATGTAATTTTGCCAAAG
1 TAGGGGCAAAAATGTAATTCTGCCAAAG
157963844 TTTGAGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (31 bp):
TAGGGGCAAAAATGTAATTCTGCCAAAGGTT
Found at i:157964667 original size:47 final size:47
Alignment explanation
Indices: 157964607--157964727 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
157964597 CATTGGCACC
157964607 AAGACAA-TAATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
1 AAGACAAGT-ATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
157964654 AAGACAAGTATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
1 AAGACAAGTATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
* * *
157964701 AAGATAAGGATATCATGTAAGACCATG
1 AAGACAAGTATACCATGTAAGACCATG
157964728 CCAAGGCATA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 69 0.99
48 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (47 bp):
AAGACAAGTATACCATGTAAGACCATGTTTGGAACATGGCATTTGGT
Found at i:157964831 original size:55 final size:53
Alignment explanation
Indices: 157964740--157964884 Score: 175
Period size: 55 Copynumber: 2.7 Consensus size: 53
157964730 AAGGCATAGC
* * *
157964740 AGGCAAGGAAATCATGTAAAACCATGTCAAGACATGGAATTGATGAGTTACTATA
1 AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGAATTGATGAGTT-C-ATA
* * * * *
157964795 AGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATA
1 AGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTCATA
*
157964848 AGGCAAGGATACCACGTAAGACCATGTCAAGACATGG
1 AGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
157964885 CAATGGTAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.05
53 31 0.41
54 1 0.01
55 36 0.47
56 4 0.05
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.20
Consensus pattern (53 bp):
AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTCATA
Found at i:157964870 original size:53 final size:53
Alignment explanation
Indices: 157964740--157964898 Score: 185
Period size: 53 Copynumber: 3.0 Consensus size: 53
157964730 AAGGCATAGC
* * * * *
157964740 AGGCAAGGAAATCATGTAAAACCATGTCAAGACATGGAATTGATGAGTTACTATA
1 AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT-C-ATA
* * *
157964795 AGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATA
1 AGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATA
* * *
157964848 AGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCA
157964899 AAAAGGAAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.05
53 43 0.49
54 1 0.01
55 36 0.41
56 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATA
Found at i:157966293 original size:27 final size:27
Alignment explanation
Indices: 157966058--157966292 Score: 355
Period size: 27 Copynumber: 8.7 Consensus size: 27
157966048 TACTGAAATG
* *
157966058 CCCTCGATTTGCAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
157966085 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
157966112 -CCTTGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
157966138 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
157966165 CCCTCGATTTAAAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
157966192 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
157966219 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
157966246 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
157966273 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
157966293 TAAAATACCC
Statistics
Matches: 191, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 25 0.13
27 166 0.87
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Done.